RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 02-Jul-2021 01:08:06 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y6V0/2_msa/Q9Y6V0_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y6V0/3_mltree/Q9Y6V0 --seed 2 --threads 4 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y6V0/2_msa/Q9Y6V0_trimmed_msa.fasta [00:00:00] Loaded alignment with 900 taxa and 178 sites WARNING: Sequences tr_A0A1D5PAQ9_A0A1D5PAQ9_CHICK_9031 and tr_G1N1J7_G1N1J7_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PAQ9_A0A1D5PAQ9_CHICK_9031 and tr_A0A226N661_A0A226N661_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PAQ9_A0A1D5PAQ9_CHICK_9031 and tr_A0A226PAY6_A0A226PAY6_COLVI_9014 are exactly identical! WARNING: Sequences tr_M3Y4H0_M3Y4H0_MUSPF_9669 and tr_G1LN25_G1LN25_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Y4H0_M3Y4H0_MUSPF_9669 and tr_A0A337S3Y1_A0A337S3Y1_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Y4H0_M3Y4H0_MUSPF_9669 and tr_A0A2U3X1A3_A0A2U3X1A3_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y4H0_M3Y4H0_MUSPF_9669 and tr_A0A2Y9K369_A0A2Y9K369_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YQS0_M3YQS0_MUSPF_9669 and tr_A0A2Y9J3N9_A0A2Y9J3N9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_Q9V4C4_Q9V4C4_DROME_7227 and tr_A0A0M4F7D2_A0A0M4F7D2_DROBS_30019 are exactly identical! WARNING: Sequences tr_Q9V4C4_Q9V4C4_DROME_7227 and tr_A0A1W4VKS6_A0A1W4VKS6_DROFC_30025 are exactly identical! WARNING: Sequences tr_A0A2I3G2E9_A0A2I3G2E9_NOMLE_61853 and tr_A0A2I3NI95_A0A2I3NI95_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3G2E9_A0A2I3G2E9_NOMLE_61853 and tr_A0A2K5YD37_A0A2K5YD37_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3H7U0_A0A2I3H7U0_NOMLE_61853 and tr_G3QM44_G3QM44_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3H7U0_A0A2I3H7U0_NOMLE_61853 and tr_H2PJK0_H2PJK0_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3H7U0_A0A2I3H7U0_NOMLE_61853 and tr_A0A2I3SK77_A0A2I3SK77_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3H7U0_A0A2I3H7U0_NOMLE_61853 and sp_Q86UR5_RIMS1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3H7U0_A0A2I3H7U0_NOMLE_61853 and tr_F7HGZ2_F7HGZ2_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3H7U0_A0A2I3H7U0_NOMLE_61853 and tr_A0A096NQJ3_A0A096NQJ3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3H7U0_A0A2I3H7U0_NOMLE_61853 and tr_A0A0D9RN49_A0A0D9RN49_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3H7U0_A0A2I3H7U0_NOMLE_61853 and tr_A0A2K5KYM2_A0A2K5KYM2_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3H7U0_A0A2I3H7U0_NOMLE_61853 and tr_A0A2K5ZY18_A0A2K5ZY18_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3H7U0_A0A2I3H7U0_NOMLE_61853 and tr_A0A2R9C2B4_A0A2R9C2B4_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3HTG1_G3HTG1_CRIGR_10029 and tr_A0A1U7QH64_A0A1U7QH64_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3QVK7_G3QVK7_GORGO_9595 and tr_H2QWJ7_H2QWJ7_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QVK7_G3QVK7_GORGO_9595 and tr_W5Q378_W5Q378_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G3QVK7_G3QVK7_GORGO_9595 and tr_A0A337SDD9_A0A337SDD9_FELCA_9685 are exactly identical! WARNING: Sequences tr_G3QVK7_G3QVK7_GORGO_9595 and tr_A0A2I3N1Q6_A0A2I3N1Q6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QVK7_G3QVK7_GORGO_9595 and tr_A0A2K6BLF9_A0A2K6BLF9_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3QVK7_G3QVK7_GORGO_9595 and tr_A0A2R9C371_A0A2R9C371_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3S010_G3S010_GORGO_9595 and tr_A0A2I3T5V9_A0A2I3T5V9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3S010_G3S010_GORGO_9595 and tr_A0A2R9BIP0_A0A2R9BIP0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3S0F0_G3S0F0_GORGO_9595 and tr_A0A2J8MYG0_A0A2J8MYG0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3S0F0_G3S0F0_GORGO_9595 and sp_Q9Y2J0_RP3A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3S0F0_G3S0F0_GORGO_9595 and tr_A0A0D9S3Y5_A0A0D9S3Y5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3S0F0_G3S0F0_GORGO_9595 and tr_A0A2K5M7Q5_A0A2K5M7Q5_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3S0F0_G3S0F0_GORGO_9595 and tr_A0A2R9B9J0_A0A2R9B9J0_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2PQZ9_H2PQZ9_PONAB_9601 and sp_Q9UQ26_RIMS2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PQZ9_H2PQZ9_PONAB_9601 and tr_G7PCG9_G7PCG9_MACFA_9541 are exactly identical! WARNING: Sequences tr_H2PQZ9_H2PQZ9_PONAB_9601 and tr_A0A384BY04_A0A384BY04_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1KJ45_G1KJ45_ANOCA_28377 and tr_U3JU29_U3JU29_FICAL_59894 are exactly identical! WARNING: Sequences tr_G1KJ45_G1KJ45_ANOCA_28377 and tr_A0A1V4KHA6_A0A1V4KHA6_PATFA_372326 are exactly identical! WARNING: Sequences tr_G1KJ45_G1KJ45_ANOCA_28377 and tr_A0A218VD55_A0A218VD55_9PASE_299123 are exactly identical! WARNING: Sequences tr_G1TET4_G1TET4_RABIT_9986 and tr_F1RTS7_F1RTS7_PIG_9823 are exactly identical! WARNING: Sequences tr_F1Q2N0_F1Q2N0_CANLF_9615 and tr_G1ME65_G1ME65_AILME_9646 are exactly identical! WARNING: Sequences tr_F1Q2N0_F1Q2N0_CANLF_9615 and tr_A0A2U3VG26_A0A2U3VG26_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1Q2N0_F1Q2N0_CANLF_9615 and tr_A0A2Y9KPN0_A0A2Y9KPN0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F1Q2N0_F1Q2N0_CANLF_9615 and tr_A0A384BPK5_A0A384BPK5_URSMA_29073 are exactly identical! WARNING: Sequences tr_J9NYS3_J9NYS3_CANLF_9615 and tr_F6U5E8_F6U5E8_HORSE_9796 are exactly identical! WARNING: Sequences tr_J9NYS3_J9NYS3_CANLF_9615 and tr_I3MIJ3_I3MIJ3_ICTTR_43179 are exactly identical! WARNING: Sequences tr_J9NYS3_J9NYS3_CANLF_9615 and tr_H0XAL8_H0XAL8_OTOGA_30611 are exactly identical! WARNING: Sequences tr_J9NYS3_J9NYS3_CANLF_9615 and tr_F6RH55_F6RH55_MACMU_9544 are exactly identical! WARNING: Sequences tr_J9NYS3_J9NYS3_CANLF_9615 and tr_G1LGE8_G1LGE8_AILME_9646 are exactly identical! WARNING: Sequences tr_J9NYS3_J9NYS3_CANLF_9615 and tr_E1B7V2_E1B7V2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_J9NYS3_J9NYS3_CANLF_9615 and tr_A0A1S3WPI2_A0A1S3WPI2_ERIEU_9365 are exactly identical! WARNING: Sequences tr_J9NYS3_J9NYS3_CANLF_9615 and tr_A0A1S3EVC9_A0A1S3EVC9_DIPOR_10020 are exactly identical! WARNING: Sequences tr_J9NYS3_J9NYS3_CANLF_9615 and tr_A0A2K5KPA5_A0A2K5KPA5_CERAT_9531 are exactly identical! WARNING: Sequences tr_J9NYS3_J9NYS3_CANLF_9615 and tr_A0A2Y9QRC3_A0A2Y9QRC3_TRIMA_127582 are exactly identical! WARNING: Sequences tr_J9NYS3_J9NYS3_CANLF_9615 and tr_A0A2Y9TA26_A0A2Y9TA26_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2I3RIW3_A0A2I3RIW3_PANTR_9598 and sp_Q9Y6V0_PCLO_HUMAN_9606 are exactly identical! WARNING: Sequences tr_W5Q2N6_W5Q2N6_SHEEP_9940 and tr_F1N415_F1N415_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A158NW14_A0A158NW14_ATTCE_12957 and tr_F4X0A8_F4X0A8_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NW14_A0A158NW14_ATTCE_12957 and tr_A0A151J4H8_A0A151J4H8_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NW14_A0A158NW14_ATTCE_12957 and tr_A0A151JW47_A0A151JW47_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NW14_A0A158NW14_ATTCE_12957 and tr_A0A195D2Z6_A0A195D2Z6_9HYME_456900 are exactly identical! WARNING: Sequences tr_H2ST41_H2ST41_TAKRU_31033 and tr_H3DF73_H3DF73_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A1D5QMU7_A0A1D5QMU7_MACMU_9544 and tr_G8F4N7_G8F4N7_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5QMU7_A0A1D5QMU7_MACMU_9544 and tr_A0A096NDF4_A0A096NDF4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5QMU7_A0A1D5QMU7_MACMU_9544 and tr_A0A0D9RR38_A0A0D9RR38_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5QMU7_A0A1D5QMU7_MACMU_9544 and tr_A0A2K5KSL5_A0A2K5KSL5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5QMU7_A0A1D5QMU7_MACMU_9544 and tr_A0A2K6E9G6_A0A2K6E9G6_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5QMU7_A0A1D5QMU7_MACMU_9544 and tr_A0A2K5ZN72_A0A2K5ZN72_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7EID7_F7EID7_MACMU_9544 and tr_G7PIQ3_G7PIQ3_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7EID7_F7EID7_MACMU_9544 and tr_A0A2I3MU66_A0A2I3MU66_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7EID7_F7EID7_MACMU_9544 and tr_A0A2K6CMJ2_A0A2K6CMJ2_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7EID7_F7EID7_MACMU_9544 and tr_A0A2K5ZI97_A0A2K5ZI97_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7HKA9_F7HKA9_MACMU_9544 and tr_A0A0D9RIF1_A0A0D9RIF1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7HKA9_F7HKA9_MACMU_9544 and tr_A0A2K5M541_A0A2K5M541_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7HKA9_F7HKA9_MACMU_9544 and tr_A0A2K6C4Y9_A0A2K6C4Y9_MACNE_9545 are exactly identical! WARNING: Sequences tr_K7G8L5_K7G8L5_PELSI_13735 and tr_H0ZPK5_H0ZPK5_TAEGU_59729 are exactly identical! WARNING: Sequences tr_K7G8L5_K7G8L5_PELSI_13735 and tr_U3I4E9_U3I4E9_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E3M7G3_E3M7G3_CAERE_31234 and tr_E3NU43_E3NU43_CAERE_31234 are exactly identical! WARNING: Sequences tr_A6QR65_A6QR65_BOVIN_9913 and sp_Q06846_RP3A_BOVIN_9913 are exactly identical! WARNING: Sequences tr_U3KBM3_U3KBM3_FICAL_59894 and tr_A0A218UVG4_A0A218UVG4_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3ISN4_U3ISN4_ANAPL_8839 and tr_A0A093I3W4_A0A093I3W4_STRCA_441894 are exactly identical! WARNING: Sequences tr_U3ISN4_U3ISN4_ANAPL_8839 and tr_A0A3Q0HQD3_A0A3Q0HQD3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A2I3LYS7_A0A2I3LYS7_PAPAN_9555 and tr_A0A0D9RPE1_A0A0D9RPE1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3LYS7_A0A2I3LYS7_PAPAN_9555 and tr_A0A2K5NQV9_A0A2K5NQV9_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3LYS7_A0A2I3LYS7_PAPAN_9555 and tr_A0A2K6D9U3_A0A2K6D9U3_MACNE_9545 are exactly identical! WARNING: Sequences tr_N6T9P1_N6T9P1_DENPD_77166 and tr_U4UCS3_U4UCS3_DENPD_77166 are exactly identical! WARNING: Sequences tr_A0A091JLU4_A0A091JLU4_EGRGA_188379 and tr_A0A091UY47_A0A091UY47_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JLU4_A0A091JLU4_EGRGA_188379 and tr_A0A093HNF3_A0A093HNF3_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091JLU4_A0A091JLU4_EGRGA_188379 and tr_A0A0A0ABU8_A0A0A0ABU8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A093PUR0_A0A093PUR0_9PASS_328815 and tr_A0A091W2X0_A0A091W2X0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A093PUR0_A0A093PUR0_9PASS_328815 and tr_A0A091G9G2_A0A091G9G2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A0V0RMD7_A0A0V0RMD7_9BILA_6336 and tr_A0A0V0ZZ55_A0A0V0ZZ55_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1DIH1_A0A0V1DIH1_TRIBR_45882 and tr_A0A0V0VSA5_A0A0V0VSA5_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1DIH1_A0A0V1DIH1_TRIBR_45882 and tr_A0A0V1AFA1_A0A0V1AFA1_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1DIH1_A0A0V1DIH1_TRIBR_45882 and tr_A0A0V1PFB4_A0A0V1PFB4_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1DIH1_A0A0V1DIH1_TRIBR_45882 and tr_A0A0V0UAG0_A0A0V0UAG0_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1LCR8_A0A0V1LCR8_9BILA_6335 and tr_A0A0V1LDS9_A0A0V1LDS9_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1N2Q6_A0A0V1N2Q6_9BILA_268474 and tr_A0A0V1HQ43_A0A0V1HQ43_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3NNK3_A0A1S3NNK3_SALSA_8030 and tr_A0A060XB99_A0A060XB99_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3PGV3_A0A1S3PGV3_SALSA_8030 and tr_A0A060YE24_A0A060YE24_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2D0Q4R7_A0A2D0Q4R7_ICTPU_7998 and tr_A0A2D0Q5Y5_A0A2D0Q5Y5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0Q5X2_A0A2D0Q5X2_ICTPU_7998 and tr_A0A2D0Q5Z0_A0A2D0Q5Z0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0Q5X2_A0A2D0Q5X2_ICTPU_7998 and tr_A0A2D0Q7L7_A0A2D0Q7L7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0Q5X2_A0A2D0Q5X2_ICTPU_7998 and tr_A0A2D0Q7M2_A0A2D0Q7M2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0Q5X2_A0A2D0Q5X2_ICTPU_7998 and tr_A0A2D0Q8L3_A0A2D0Q8L3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0Q5X2_A0A2D0Q5X2_ICTPU_7998 and tr_A0A2D0Q8L8_A0A2D0Q8L8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QN71_A0A2D0QN71_ICTPU_7998 and tr_A0A2D0QNG4_A0A2D0QNG4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QN71_A0A2D0QN71_ICTPU_7998 and tr_A0A2D0QQ32_A0A2D0QQ32_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QN71_A0A2D0QN71_ICTPU_7998 and tr_A0A2D0QQ38_A0A2D0QQ38_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QN71_A0A2D0QN71_ICTPU_7998 and tr_A0A2D0QQU2_A0A2D0QQU2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QN71_A0A2D0QN71_ICTPU_7998 and tr_A0A2D0QQU6_A0A2D0QQU6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4AVA0_A0A2U4AVA0_TURTR_9739 and tr_A0A2Y9PS02_A0A2Y9PS02_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4AVA0_A0A2U4AVA0_TURTR_9739 and tr_A0A2Y9TEM1_A0A2Y9TEM1_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4B2C9_A0A2U4B2C9_TURTR_9739 and tr_A0A2Y9N297_A0A2Y9N297_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4B2C9_A0A2U4B2C9_TURTR_9739 and tr_A0A2Y9SNA4_A0A2Y9SNA4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4BXD1_A0A2U4BXD1_TURTR_9739 and tr_A0A2Y9PCV3_A0A2Y9PCV3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2Y9MH10_A0A2Y9MH10_DELLE_9749 and tr_A0A2Y9T7N1_A0A2Y9T7N1_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 120 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y6V0/3_mltree/Q9Y6V0.raxml.reduced.phy Alignment comprises 1 partitions and 178 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 178 / 178 Gaps: 14.87 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y6V0/3_mltree/Q9Y6V0.raxml.rba Parallelization scheme autoconfig: 4 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 900 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 178 / 14240 [00:00:00] Data distribution: max. searches per worker: 5 Starting ML tree search with 20 distinct starting trees [00:00:00 -282449.387230] Initial branch length optimization [00:00:03 -224639.146570] Model parameter optimization (eps = 10.000000) [00:00:57 -223406.631797] AUTODETECT spr round 1 (radius: 5) [00:02:57 -141026.660810] AUTODETECT spr round 2 (radius: 10) [00:04:59 -97972.270035] AUTODETECT spr round 3 (radius: 15) [00:07:11 -78972.008253] AUTODETECT spr round 4 (radius: 20) [00:09:51 -63953.121671] AUTODETECT spr round 5 (radius: 25) [00:12:29 -61488.644585] SPR radius for FAST iterations: 25 (autodetect) [00:12:30 -61488.644585] Model parameter optimization (eps = 3.000000) [00:13:02 -61089.081672] FAST spr round 1 (radius: 25) [00:15:21 -52176.988597] FAST spr round 2 (radius: 25) [00:17:05 -51681.623432] FAST spr round 3 (radius: 25) [00:18:40 -51656.806187] FAST spr round 4 (radius: 25) [00:20:11 -51653.253739] FAST spr round 5 (radius: 25) [00:21:40 -51641.013414] FAST spr round 6 (radius: 25) [00:23:06 -51637.717261] FAST spr round 7 (radius: 25) [00:24:27 -51637.090067] FAST spr round 8 (radius: 25) [00:25:51 -51634.818559] FAST spr round 9 (radius: 25) [00:27:13 -51634.818161] Model parameter optimization (eps = 1.000000) [00:27:28 -51631.085616] SLOW spr round 1 (radius: 5) [00:29:17 -51619.731590] SLOW spr round 2 (radius: 5) [00:31:06 -51617.673886] SLOW spr round 3 (radius: 5) [00:32:52 -51617.673437] SLOW spr round 4 (radius: 10) [00:34:41 -51613.923874] SLOW spr round 5 (radius: 5) [00:36:52 -51613.923775] SLOW spr round 6 (radius: 10) [00:38:56 -51613.923679] SLOW spr round 7 (radius: 15) [00:41:42 -51613.667356] SLOW spr round 8 (radius: 5) [00:44:03 -51612.684580] SLOW spr round 9 (radius: 5) [00:46:04 -51612.684490] SLOW spr round 10 (radius: 10) [00:48:01 -51612.684432] SLOW spr round 11 (radius: 15) [00:50:51 -51612.684386] SLOW spr round 12 (radius: 20) [00:54:48 -51612.472207] SLOW spr round 13 (radius: 5) [00:56:54] [worker #3] ML tree search #4, logLikelihood: -51604.602208 [00:57:08 -51612.470211] SLOW spr round 14 (radius: 10) [00:59:18 -51612.470193] SLOW spr round 15 (radius: 15) [01:01:56 -51612.343042] SLOW spr round 16 (radius: 5) [01:04:07 -51612.340859] SLOW spr round 17 (radius: 10) [01:06:12 -51612.339376] SLOW spr round 18 (radius: 15) [01:06:21] [worker #2] ML tree search #3, logLikelihood: -51588.347134 [01:08:56 -51612.338351] SLOW spr round 19 (radius: 20) [01:13:00 -51612.337633] SLOW spr round 20 (radius: 25) [01:17:39 -51612.337124] Model parameter optimization (eps = 0.100000) [01:17:44] [worker #0] ML tree search #1, logLikelihood: -51612.302209 [01:17:44 -279282.309155] Initial branch length optimization [01:17:48 -221097.122641] Model parameter optimization (eps = 10.000000) [01:18:37 -219904.117148] AUTODETECT spr round 1 (radius: 5) [01:20:38 -139127.681371] AUTODETECT spr round 2 (radius: 10) [01:22:42 -99350.581162] AUTODETECT spr round 3 (radius: 15) [01:24:59 -78459.768522] AUTODETECT spr round 4 (radius: 20) [01:27:32 -66810.396108] AUTODETECT spr round 5 (radius: 25) [01:30:04] [worker #1] ML tree search #2, logLikelihood: -51616.053685 [01:30:31 -62348.962177] SPR radius for FAST iterations: 25 (autodetect) [01:30:31 -62348.962177] Model parameter optimization (eps = 3.000000) [01:31:04 -61946.613682] FAST spr round 1 (radius: 25) [01:33:26 -52351.974298] FAST spr round 2 (radius: 25) [01:35:13 -51725.349437] FAST spr round 3 (radius: 25) [01:36:50 -51656.483997] FAST spr round 4 (radius: 25) [01:38:20 -51638.571407] FAST spr round 5 (radius: 25) [01:39:44 -51634.261747] FAST spr round 6 (radius: 25) [01:41:06 -51634.012039] FAST spr round 7 (radius: 25) [01:42:27 -51634.011598] Model parameter optimization (eps = 1.000000) [01:42:43 -51623.278734] SLOW spr round 1 (radius: 5) [01:44:30 -51604.504268] SLOW spr round 2 (radius: 5) [01:46:17 -51602.532108] SLOW spr round 3 (radius: 5) [01:48:04 -51602.436434] SLOW spr round 4 (radius: 10) [01:48:49] [worker #3] ML tree search #8, logLikelihood: -51592.719117 [01:49:54 -51602.226197] SLOW spr round 5 (radius: 5) [01:52:08 -51602.219093] SLOW spr round 6 (radius: 10) [01:54:15 -51602.219044] SLOW spr round 7 (radius: 15) [01:57:03] [worker #2] ML tree search #7, logLikelihood: -51590.889081 [01:57:05 -51600.742569] SLOW spr round 8 (radius: 5) [01:59:22 -51600.742488] SLOW spr round 9 (radius: 10) [02:01:35 -51600.742488] SLOW spr round 10 (radius: 15) [02:04:24 -51600.742488] SLOW spr round 11 (radius: 20) [02:08:38 -51600.742487] SLOW spr round 12 (radius: 25) [02:13:48 -51600.742487] Model parameter optimization (eps = 0.100000) [02:13:55] [worker #0] ML tree search #5, logLikelihood: -51600.722726 [02:13:55 -281457.477538] Initial branch length optimization [02:14:00 -225129.737045] Model parameter optimization (eps = 10.000000) [02:14:53 -223803.733950] AUTODETECT spr round 1 (radius: 5) [02:16:53 -134893.648399] AUTODETECT spr round 2 (radius: 10) [02:18:53] [worker #1] ML tree search #6, logLikelihood: -51591.260224 [02:18:55 -96918.894828] AUTODETECT spr round 3 (radius: 15) [02:21:10 -80345.205750] AUTODETECT spr round 4 (radius: 20) [02:23:58 -69906.556396] AUTODETECT spr round 5 (radius: 25) [02:27:00 -64350.290141] SPR radius for FAST iterations: 25 (autodetect) [02:27:00 -64350.290141] Model parameter optimization (eps = 3.000000) [02:27:33 -63944.275148] FAST spr round 1 (radius: 25) [02:30:10 -52747.326212] FAST spr round 2 (radius: 25) [02:32:08 -51723.237711] FAST spr round 3 (radius: 25) [02:33:53 -51644.615990] FAST spr round 4 (radius: 25) [02:35:25 -51638.194074] FAST spr round 5 (radius: 25) [02:36:50 -51638.191673] Model parameter optimization (eps = 1.000000) [02:37:08 -51628.021965] SLOW spr round 1 (radius: 5) [02:39:01 -51615.822961] SLOW spr round 2 (radius: 5) [02:39:06] [worker #3] ML tree search #12, logLikelihood: -51613.694420 [02:40:52 -51607.546571] SLOW spr round 3 (radius: 5) [02:42:42 -51599.550406] SLOW spr round 4 (radius: 5) [02:44:33 -51596.755942] SLOW spr round 5 (radius: 5) [02:46:20 -51596.754082] SLOW spr round 6 (radius: 10) [02:48:13 -51595.540595] SLOW spr round 7 (radius: 5) [02:50:28 -51594.378047] SLOW spr round 8 (radius: 5) [02:52:29 -51592.470683] SLOW spr round 9 (radius: 5) [02:54:21 -51592.470340] SLOW spr round 10 (radius: 10) [02:56:14 -51592.470202] SLOW spr round 11 (radius: 15) [02:59:15 -51591.582283] SLOW spr round 12 (radius: 5) [03:01:33 -51591.582165] SLOW spr round 13 (radius: 10) [03:03:43 -51591.568081] SLOW spr round 14 (radius: 15) [03:06:33 -51591.567970] SLOW spr round 15 (radius: 20) [03:10:53 -51589.618924] SLOW spr round 16 (radius: 5) [03:13:16 -51589.506643] SLOW spr round 17 (radius: 5) [03:14:32] [worker #2] ML tree search #11, logLikelihood: -51613.834438 [03:15:19 -51589.502218] SLOW spr round 18 (radius: 10) [03:17:15 -51589.500820] SLOW spr round 19 (radius: 15) [03:20:04 -51589.499870] SLOW spr round 20 (radius: 20) [03:22:04] [worker #1] ML tree search #10, logLikelihood: -51638.404737 [03:24:17 -51589.152792] SLOW spr round 21 (radius: 5) [03:26:38 -51589.152663] SLOW spr round 22 (radius: 10) [03:28:52 -51589.152629] SLOW spr round 23 (radius: 15) [03:31:39 -51589.152596] SLOW spr round 24 (radius: 20) [03:35:54 -51589.110049] SLOW spr round 25 (radius: 25) [03:41:04 -51589.099827] Model parameter optimization (eps = 0.100000) [03:41:16] [worker #0] ML tree search #9, logLikelihood: -51586.885718 [03:41:16 -281363.575352] Initial branch length optimization [03:41:20 -224935.863053] Model parameter optimization (eps = 10.000000) [03:42:04 -223797.641859] AUTODETECT spr round 1 (radius: 5) [03:44:04 -137156.717417] AUTODETECT spr round 2 (radius: 10) [03:46:04 -95917.178576] AUTODETECT spr round 3 (radius: 15) [03:48:21 -77499.314841] AUTODETECT spr round 4 (radius: 20) [03:50:45 -68749.269378] AUTODETECT spr round 5 (radius: 25) [03:53:39 -64438.736917] SPR radius for FAST iterations: 25 (autodetect) [03:53:39 -64438.736917] Model parameter optimization (eps = 3.000000) [03:54:13 -64003.633467] FAST spr round 1 (radius: 25) [03:56:33 -53365.353179] FAST spr round 2 (radius: 25) [03:58:20 -51721.657134] FAST spr round 3 (radius: 25) [03:59:54 -51649.502553] FAST spr round 4 (radius: 25) [04:00:44] [worker #2] ML tree search #15, logLikelihood: -51609.385321 [04:01:21 -51639.347062] FAST spr round 5 (radius: 25) [04:02:42 -51639.346067] Model parameter optimization (eps = 1.000000) [04:03:00 -51627.920183] SLOW spr round 1 (radius: 5) [04:04:45 -51609.276570] SLOW spr round 2 (radius: 5) [04:06:31 -51608.682330] SLOW spr round 3 (radius: 5) [04:08:12 -51608.674510] SLOW spr round 4 (radius: 10) [04:09:55 -51608.101065] SLOW spr round 5 (radius: 5) [04:12:00 -51608.100603] SLOW spr round 6 (radius: 10) [04:13:14] [worker #1] ML tree search #14, logLikelihood: -51611.926596 [04:13:58 -51608.100367] SLOW spr round 7 (radius: 15) [04:16:36 -51608.033585] SLOW spr round 8 (radius: 20) [04:20:33 -51608.032391] SLOW spr round 9 (radius: 25) [04:25:27 -51608.031027] Model parameter optimization (eps = 0.100000) [04:25:36] [worker #0] ML tree search #13, logLikelihood: -51607.797236 [04:25:36 -278363.099385] Initial branch length optimization [04:25:40 -221393.644133] Model parameter optimization (eps = 10.000000) [04:26:38 -220158.640911] AUTODETECT spr round 1 (radius: 5) [04:28:47 -133195.600055] AUTODETECT spr round 2 (radius: 10) [04:30:55 -98783.245564] AUTODETECT spr round 3 (radius: 15) [04:33:19 -76671.644953] AUTODETECT spr round 4 (radius: 20) [04:36:11 -63539.606217] AUTODETECT spr round 5 (radius: 25) [04:37:48] [worker #3] ML tree search #16, logLikelihood: -51588.532766 [04:39:19 -60169.916505] SPR radius for FAST iterations: 25 (autodetect) [04:39:19 -60169.916505] Model parameter optimization (eps = 3.000000) [04:39:49 -59813.446681] FAST spr round 1 (radius: 25) [04:42:19 -52172.435661] FAST spr round 2 (radius: 25) [04:44:15 -51691.801492] FAST spr round 3 (radius: 25) [04:45:57 -51650.696892] FAST spr round 4 (radius: 25) [04:47:32 -51636.761993] FAST spr round 5 (radius: 25) [04:49:02 -51624.572548] FAST spr round 6 (radius: 25) [04:50:27 -51624.565497] Model parameter optimization (eps = 1.000000) [04:50:39 -51616.403306] SLOW spr round 1 (radius: 5) [04:52:30 -51598.775413] SLOW spr round 2 (radius: 5) [04:54:21 -51594.186751] SLOW spr round 3 (radius: 5) [04:56:08 -51589.787530] SLOW spr round 4 (radius: 5) [04:57:54 -51589.618895] SLOW spr round 5 (radius: 5) [04:59:39 -51589.618804] SLOW spr round 6 (radius: 10) [05:01:27 -51589.618719] SLOW spr round 7 (radius: 15) [05:04:17 -51589.604662] SLOW spr round 8 (radius: 20) [05:08:02 -51589.604588] SLOW spr round 9 (radius: 25) [05:12:43 -51589.020369] SLOW spr round 10 (radius: 5) [05:15:05 -51589.014639] SLOW spr round 11 (radius: 10) [05:15:10] [worker #2] ML tree search #19, logLikelihood: -51601.892463 [05:17:19 -51588.621996] SLOW spr round 12 (radius: 5) [05:19:26 -51588.621862] SLOW spr round 13 (radius: 10) [05:21:27 -51588.621797] SLOW spr round 14 (radius: 15) [05:24:05 -51588.621743] SLOW spr round 15 (radius: 20) [05:27:54 -51588.621692] SLOW spr round 16 (radius: 25) [05:29:30] [worker #1] ML tree search #18, logLikelihood: -51623.528092 [05:32:34 -51588.621643] Model parameter optimization (eps = 0.100000) [05:32:45] [worker #0] ML tree search #17, logLikelihood: -51588.422637 [05:42:47] [worker #3] ML tree search #20, logLikelihood: -51612.613452 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.166898,0.983574) (0.091847,1.124314) (0.343621,0.709847) (0.397635,1.228919) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -51586.885718 AIC score: 106779.771436 / AICc score: 6612003.771436 / BIC score: 112516.527177 Free parameters (model + branch lengths): 1803 WARNING: Number of free parameters (K=1803) is larger than alignment size (n=178). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 4 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y6V0/3_mltree/Q9Y6V0.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y6V0/3_mltree/Q9Y6V0.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y6V0/3_mltree/Q9Y6V0.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y6V0/3_mltree/Q9Y6V0.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y6V0/3_mltree/Q9Y6V0.raxml.log Analysis started: 02-Jul-2021 01:08:06 / finished: 02-Jul-2021 06:50:53 Elapsed time: 20567.302 seconds Consumed energy: 1858.077 Wh (= 9 km in an electric car, or 46 km with an e-scooter!)