RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 06-Jul-2021 02:53:09 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y6N6/2_msa/Q9Y6N6_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y6N6/3_mltree/Q9Y6N6 --seed 2 --threads 2 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y6N6/2_msa/Q9Y6N6_trimmed_msa.fasta [00:00:00] Loaded alignment with 981 taxa and 86 sites WARNING: Sequences tr_B4QN95_B4QN95_DROSI_7240 and sp_P15215_LAMC1_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QN95_B4QN95_DROSI_7240 and tr_B3MAB1_B3MAB1_DROAN_7217 are exactly identical! WARNING: Sequences tr_F1QUK5_F1QUK5_DANRE_7955 and tr_M4AJA1_M4AJA1_XIPMA_8083 are exactly identical! WARNING: Sequences tr_F1QUK5_F1QUK5_DANRE_7955 and tr_I3JNE5_I3JNE5_ORENI_8128 are exactly identical! WARNING: Sequences tr_F1QUK5_F1QUK5_DANRE_7955 and tr_G3NUU1_G3NUU1_GASAC_69293 are exactly identical! WARNING: Sequences tr_F1QUK5_F1QUK5_DANRE_7955 and tr_A0A087XIB3_A0A087XIB3_POEFO_48698 are exactly identical! WARNING: Sequences tr_F1QUK5_F1QUK5_DANRE_7955 and tr_A0A2U9CRF0_A0A2U9CRF0_SCOMX_52904 are exactly identical! WARNING: Sequences tr_X1WCF2_X1WCF2_DANRE_7955 and tr_W5MRC2_W5MRC2_LEPOC_7918 are exactly identical! WARNING: Sequences tr_A0A1D5P1P1_A0A1D5P1P1_CHICK_9031 and sp_Q90923_NET3_CHICK_9031 are exactly identical! WARNING: Sequences tr_A0A1D5P1P1_A0A1D5P1P1_CHICK_9031 and tr_H3A7N2_H3A7N2_LATCH_7897 are exactly identical! WARNING: Sequences tr_A0A1D5P1P1_A0A1D5P1P1_CHICK_9031 and tr_A0A151N6K8_A0A151N6K8_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A1D5P1P1_A0A1D5P1P1_CHICK_9031 and tr_A0A099ZVR1_A0A099ZVR1_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1D5P1P1_A0A1D5P1P1_CHICK_9031 and tr_A0A226MVL1_A0A226MVL1_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5P1P1_A0A1D5P1P1_CHICK_9031 and tr_A0A226NTU1_A0A226NTU1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1I7Q444_A0A1I7Q444_CHICK_9031 and sp_Q90922_NET1_CHICK_9031 are exactly identical! WARNING: Sequences tr_A0A1I7Q444_A0A1I7Q444_CHICK_9031 and tr_A0A226MGT8_A0A226MGT8_CALSU_9009 are exactly identical! WARNING: Sequences sp_O09118_NET1_MOUSE_10090 and sp_Q924Z9_NET1_RAT_10116 are exactly identical! WARNING: Sequences sp_O09118_NET1_MOUSE_10090 and tr_G5B5G8_G5B5G8_HETGA_10181 are exactly identical! WARNING: Sequences sp_O09118_NET1_MOUSE_10090 and tr_A0A1S3EWZ8_A0A1S3EWZ8_DIPOR_10020 are exactly identical! WARNING: Sequences sp_O09118_NET1_MOUSE_10090 and tr_A0A1U8BHC8_A0A1U8BHC8_MESAU_10036 are exactly identical! WARNING: Sequences sp_P02468_LAMC1_MOUSE_10090 and tr_G3HG25_G3HG25_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P02468_LAMC1_MOUSE_10090 and tr_F1MAA7_F1MAA7_RAT_10116 are exactly identical! WARNING: Sequences sp_P02468_LAMC1_MOUSE_10090 and tr_A0A1U7QD11_A0A1U7QD11_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q9R1A3_NET3_MOUSE_10090 and tr_G3I2T2_G3I2T2_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q9R1A3_NET3_MOUSE_10090 and tr_G3V6X3_G3V6X3_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9R1A3_NET3_MOUSE_10090 and tr_A0A1U7QY66_A0A1U7QY66_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YV53_M3YV53_MUSPF_9669 and tr_G3S4P5_G3S4P5_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YV53_M3YV53_MUSPF_9669 and tr_H2NPU6_H2NPU6_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YV53_M3YV53_MUSPF_9669 and tr_E2R3Q6_E2R3Q6_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YV53_M3YV53_MUSPF_9669 and tr_H2QAD5_H2QAD5_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YV53_M3YV53_MUSPF_9669 and tr_F6QJR4_F6QJR4_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YV53_M3YV53_MUSPF_9669 and tr_I3MXR3_I3MXR3_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YV53_M3YV53_MUSPF_9669 and sp_O00634_NET3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YV53_M3YV53_MUSPF_9669 and tr_G1MHZ4_G1MHZ4_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YV53_M3YV53_MUSPF_9669 and tr_M3VXM1_M3VXM1_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YV53_M3YV53_MUSPF_9669 and tr_A0A096NL57_A0A096NL57_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YV53_M3YV53_MUSPF_9669 and tr_A0A2K5NS94_A0A2K5NS94_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YV53_M3YV53_MUSPF_9669 and tr_A0A2K6D9X2_A0A2K6D9X2_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YV53_M3YV53_MUSPF_9669 and tr_A0A2K5YM21_A0A2K5YM21_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YV53_M3YV53_MUSPF_9669 and tr_A0A2R9A817_A0A2R9A817_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YV53_M3YV53_MUSPF_9669 and tr_A0A2U3ZIJ8_A0A2U3ZIJ8_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YV53_M3YV53_MUSPF_9669 and tr_A0A2U3Y6X3_A0A2U3Y6X3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YV53_M3YV53_MUSPF_9669 and tr_A0A2Y9KGR4_A0A2Y9KGR4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1S8P7_G1S8P7_NOMLE_61853 and tr_H2Q0R1_H2Q0R1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1S8P7_G1S8P7_NOMLE_61853 and tr_G7NXG7_G7NXG7_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1S8P7_G1S8P7_NOMLE_61853 and tr_A0A2I3M8F1_A0A2I3M8F1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1S8P7_G1S8P7_NOMLE_61853 and tr_A0A0D9RJJ4_A0A0D9RJJ4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1S8P7_G1S8P7_NOMLE_61853 and tr_A0A2K6DXW8_A0A2K6DXW8_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1S8P7_G1S8P7_NOMLE_61853 and tr_A0A2K5ZXG3_A0A2K5ZXG3_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1S8P7_G1S8P7_NOMLE_61853 and tr_A0A2R9AWQ5_A0A2R9AWQ5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1PVJ7_G1PVJ7_MYOLU_59463 and tr_A0A0D9RDN8_A0A0D9RDN8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1PVJ7_G1PVJ7_MYOLU_59463 and tr_A0A3Q0DQ66_A0A3Q0DQ66_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G3RF36_G3RF36_GORGO_9595 and sp_Q13753_LAMC2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RF36_G3RF36_GORGO_9595 and tr_A0A2R9B9I9_A0A2R9B9I9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RJR2_G3RJR2_GORGO_9595 and sp_P25391_LAMA1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3S795_G3S795_GORGO_9595 and sp_P11047_LAMC1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_C3ZCS7_C3ZCS7_BRAFL_7739 and tr_C3ZZE0_C3ZZE0_BRAFL_7739 are exactly identical! WARNING: Sequences tr_K7ET03_K7ET03_PONAB_9601 and tr_F6WVB2_F6WVB2_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1MSJ8_G1MSJ8_MELGA_9103 and tr_A0A226PXU4_A0A226PXU4_COLVI_9014 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_F1PSP7_F1PSP7_CANLF_9615 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_H2QC90_H2QC90_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_F7G4D6_F7G4D6_MONDO_13616 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_I3LX86_I3LX86_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_H0WGF4_H0WGF4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and sp_O95631_NET1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_G3SUN1_G3SUN1_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_U3DL39_U3DL39_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_F1N0C7_F1N0C7_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_A0A2I2UDA4_A0A2I2UDA4_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_A0A0D9RD89_A0A0D9RD89_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_A0A1S2ZPN6_A0A1S2ZPN6_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_A0A3Q0DGL9_A0A3Q0DGL9_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_A0A2K5LM24_A0A2K5LM24_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_A0A2K6BA00_A0A2K6BA00_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_A0A2K5ZVT1_A0A2K5ZVT1_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_A0A2R9AA25_A0A2R9AA25_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_A0A2U4C2Z5_A0A2U4C2Z5_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_A0A2U3VT40_A0A2U3VT40_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_A0A2Y9DKD2_A0A2Y9DKD2_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_A0A2Y9L9N9_A0A2Y9L9N9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_A0A2Y9Q6I1_A0A2Y9Q6I1_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_A0A2Y9T6H0_A0A2Y9T6H0_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1KUB3_G1KUB3_ANOCA_28377 and tr_A0A383YUX5_A0A383YUX5_BALAS_310752 are exactly identical! WARNING: Sequences tr_Q29CY8_Q29CY8_DROPS_46245 and tr_B4H9M8_B4H9M8_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q29KB2_Q29KB2_DROPS_46245 and tr_B4GX61_B4GX61_DROPE_7234 are exactly identical! WARNING: Sequences sp_P34710_UNC6_CAEEL_6239 and tr_G0N586_G0N586_CAEBE_135651 are exactly identical! WARNING: Sequences sp_P34710_UNC6_CAEEL_6239 and tr_A0A1I7TB94_A0A1I7TB94_9PELO_1561998 are exactly identical! WARNING: Sequences sp_P34710_UNC6_CAEEL_6239 and tr_A0A2G5SVG9_A0A2G5SVG9_9PELO_1611254 are exactly identical! WARNING: Sequences tr_A0A2I3TJK6_A0A2I3TJK6_PANTR_9598 and tr_A0A2K5M0F2_A0A2K5M0F2_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3TJK6_A0A2I3TJK6_PANTR_9598 and tr_A0A2K5Z256_A0A2K5Z256_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3TJK6_A0A2I3TJK6_PANTR_9598 and tr_A0A2R9B1X0_A0A2R9B1X0_PANPA_9597 are exactly identical! WARNING: Sequences tr_K7D0T5_K7D0T5_PANTR_9598 and tr_I3MCB3_I3MCB3_ICTTR_43179 are exactly identical! WARNING: Sequences tr_K7D0T5_K7D0T5_PANTR_9598 and tr_A0A2R9AC71_A0A2R9AC71_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6SLT4_F6SLT4_MONDO_13616 and tr_G3WP09_G3WP09_SARHA_9305 are exactly identical! WARNING: Sequences tr_W5PVY4_W5PVY4_SHEEP_9940 and tr_F1MMT2_F1MMT2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PVY4_W5PVY4_SHEEP_9940 and tr_A0A384AUS7_A0A384AUS7_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3ZM78_M3ZM78_XIPMA_8083 and tr_A0A087YMQ9_A0A087YMQ9_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZWP7_M3ZWP7_XIPMA_8083 and tr_A0A087X989_A0A087X989_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088A5N6_A0A088A5N6_APIME_7460 and tr_A0A2A3E4S8_A0A2A3E4S8_APICC_94128 are exactly identical! WARNING: Sequences tr_I3KP27_I3KP27_ORENI_8128 and tr_H2U9Y6_H2U9Y6_TAKRU_31033 are exactly identical! WARNING: Sequences tr_I3KP27_I3KP27_ORENI_8128 and tr_H3CIU4_H3CIU4_TETNG_99883 are exactly identical! WARNING: Sequences tr_I3KP27_I3KP27_ORENI_8128 and tr_G3Q6U6_G3Q6U6_GASAC_69293 are exactly identical! WARNING: Sequences tr_I3KP27_I3KP27_ORENI_8128 and tr_A0A2U9BQD3_A0A2U9BQD3_SCOMX_52904 are exactly identical! WARNING: Sequences tr_I3KVS7_I3KVS7_ORENI_8128 and tr_H2UI73_H2UI73_TAKRU_31033 are exactly identical! WARNING: Sequences tr_I3KVS7_I3KVS7_ORENI_8128 and tr_H3D5I2_H3D5I2_TETNG_99883 are exactly identical! WARNING: Sequences tr_I3KVS7_I3KVS7_ORENI_8128 and tr_A0A087YGP4_A0A087YGP4_POEFO_48698 are exactly identical! WARNING: Sequences tr_I3KVS7_I3KVS7_ORENI_8128 and tr_A0A2I4B7G7_A0A2I4B7G7_9TELE_52670 are exactly identical! WARNING: Sequences tr_I3KVS7_I3KVS7_ORENI_8128 and tr_A0A2U9CNZ9_A0A2U9CNZ9_SCOMX_52904 are exactly identical! WARNING: Sequences tr_I3MCM1_I3MCM1_ICTTR_43179 and tr_A0A1U7V4J5_A0A1U7V4J5_TARSY_1868482 are exactly identical! WARNING: Sequences tr_H0VBS9_H0VBS9_CAVPO_10141 and tr_A0A091D5K0_A0A091D5K0_FUKDA_885580 are exactly identical! WARNING: Sequences sp_O15230_LAMA5_HUMAN_9606 and tr_A0A2R9AKK2_A0A2R9AKK2_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A0K0JKV7_A0A0K0JKV7_BRUMA_6279 and tr_A0A0N4T6B2_A0A0N4T6B2_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A158PYP7_A0A158PYP7_BRUMA_6279 and tr_A0A158PQA4_A0A158PQA4_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A158PYP7_A0A158PYP7_BRUMA_6279 and tr_A0A0R3QQE6_A0A0R3QQE6_9BILA_42155 are exactly identical! WARNING: Sequences tr_A0A158PZD7_A0A158PZD7_BRUMA_6279 and tr_A0A158PQD6_A0A158PQD6_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A1P6C2T3_A0A1P6C2T3_BRUMA_6279 and tr_A0A158PPY4_A0A158PPY4_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A1D5RDE7_A0A1D5RDE7_MACMU_9544 and tr_G7P369_G7P369_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5RDE7_A0A1D5RDE7_MACMU_9544 and tr_A0A096MV87_A0A096MV87_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5RDE7_A0A1D5RDE7_MACMU_9544 and tr_A0A0D9RVG2_A0A0D9RVG2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5RDE7_A0A1D5RDE7_MACMU_9544 and tr_A0A2K5P4H9_A0A2K5P4H9_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5RDE7_A0A1D5RDE7_MACMU_9544 and tr_A0A2K6BZP0_A0A2K6BZP0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5RDE7_A0A1D5RDE7_MACMU_9544 and tr_A0A2K5XDN0_A0A2K5XDN0_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6VZB6_F6VZB6_MACMU_9544 and tr_G7PWE5_G7PWE5_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6VZB6_F6VZB6_MACMU_9544 and tr_A0A096MZ03_A0A096MZ03_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6VZB6_F6VZB6_MACMU_9544 and tr_A0A2K5LWF1_A0A2K5LWF1_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6VZB6_F6VZB6_MACMU_9544 and tr_A0A2K6D665_A0A2K6D665_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6VZB6_F6VZB6_MACMU_9544 and tr_A0A2K5Z9X7_A0A2K5Z9X7_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7B9R3_F7B9R3_MACMU_9544 and tr_A0A2K6BML6_A0A2K6BML6_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7BDD8_F7BDD8_MACMU_9544 and tr_G7NXG6_G7NXG6_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7BDD8_F7BDD8_MACMU_9544 and tr_A0A096N8I0_A0A096N8I0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7BDD8_F7BDD8_MACMU_9544 and tr_A0A2K5MHW6_A0A2K5MHW6_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7BDD8_F7BDD8_MACMU_9544 and tr_A0A2K6CFY0_A0A2K6CFY0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7BDD8_F7BDD8_MACMU_9544 and tr_A0A2K5ZQ84_A0A2K5ZQ84_MANLE_9568 are exactly identical! WARNING: Sequences tr_E5S550_E5S550_TRISP_6334 and tr_A0A0V0RRN7_A0A0V0RRN7_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5S550_E5S550_TRISP_6334 and tr_A0A0V0XA91_A0A0V0XA91_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5S550_E5S550_TRISP_6334 and tr_A0A0V1MAE5_A0A0V1MAE5_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5S550_E5S550_TRISP_6334 and tr_A0A0V1HVM4_A0A0V1HVM4_9BILA_268475 are exactly identical! WARNING: Sequences tr_E5S550_E5S550_TRISP_6334 and tr_A0A0V0U9F9_A0A0V0U9F9_9BILA_144512 are exactly identical! WARNING: Sequences tr_E5SMX5_E5SMX5_TRISP_6334 and tr_A0A0V0S3U8_A0A0V0S3U8_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5SMX5_E5SMX5_TRISP_6334 and tr_A0A0V0WZM6_A0A0V0WZM6_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5SMX5_E5SMX5_TRISP_6334 and tr_A0A0V0V6M9_A0A0V0V6M9_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5SMX5_E5SMX5_TRISP_6334 and tr_A0A0V1LSZ3_A0A0V1LSZ3_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5SMX5_E5SMX5_TRISP_6334 and tr_A0A0V1A494_A0A0V1A494_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5SMX5_E5SMX5_TRISP_6334 and tr_A0A0V0XRA0_A0A0V0XRA0_TRIPS_6337 are exactly identical! WARNING: Sequences tr_E5SMX5_E5SMX5_TRISP_6334 and tr_A0A0V1MLA9_A0A0V1MLA9_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5SMX5_E5SMX5_TRISP_6334 and tr_A0A0V1P092_A0A0V1P092_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5SMX5_E5SMX5_TRISP_6334 and tr_A0A0V1GUS5_A0A0V1GUS5_9BILA_268475 are exactly identical! WARNING: Sequences tr_E5SMX5_E5SMX5_TRISP_6334 and tr_A0A0V0U7F3_A0A0V0U7F3_9BILA_144512 are exactly identical! WARNING: Sequences tr_H0Z423_H0Z423_TAEGU_59729 and tr_U3K412_U3K412_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0Z423_H0Z423_TAEGU_59729 and tr_A0A0Q3LZJ7_A0A0Q3LZJ7_AMAAE_12930 are exactly identical! WARNING: Sequences tr_H0Z423_H0Z423_TAEGU_59729 and tr_A0A091UMD2_A0A091UMD2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H0Z423_H0Z423_TAEGU_59729 and tr_A0A2I0LP71_A0A2I0LP71_COLLI_8932 are exactly identical! WARNING: Sequences tr_H0Z423_H0Z423_TAEGU_59729 and tr_A0A1V4L0P8_A0A1V4L0P8_PATFA_372326 are exactly identical! WARNING: Sequences tr_H0Z423_H0Z423_TAEGU_59729 and tr_A0A218UHL2_A0A218UHL2_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZNB8_H0ZNB8_TAEGU_59729 and tr_U3KAJ6_U3KAJ6_FICAL_59894 are exactly identical! WARNING: Sequences tr_G0PCB3_G0PCB3_CAEBE_135651 and tr_A0A1I7T4I8_A0A1I7T4I8_9PELO_1561998 are exactly identical! WARNING: Sequences tr_A0A287A555_A0A287A555_PIG_9823 and sp_Q2HXW4_NET1_PIG_9823 are exactly identical! WARNING: Sequences tr_E3LD86_E3LD86_CAERE_31234 and tr_A0A261CQP6_A0A261CQP6_9PELO_1503980 are exactly identical! WARNING: Sequences tr_H3ADP0_H3ADP0_LATCH_7897 and tr_A0A1S3L5W0_A0A1S3L5W0_SALSA_8030 are exactly identical! WARNING: Sequences tr_H3ADP0_H3ADP0_LATCH_7897 and tr_A0A1S3PS44_A0A1S3PS44_SALSA_8030 are exactly identical! WARNING: Sequences tr_H3ADP0_H3ADP0_LATCH_7897 and tr_A0A1L8EN54_A0A1L8EN54_XENLA_8355 are exactly identical! WARNING: Sequences tr_H3ADP0_H3ADP0_LATCH_7897 and tr_A0A1L8EV13_A0A1L8EV13_XENLA_8355 are exactly identical! WARNING: Sequences tr_G1LM02_G1LM02_AILME_9646 and tr_A0A384C7L4_A0A384C7L4_URSMA_29073 are exactly identical! WARNING: Sequences tr_B3S235_B3S235_TRIAD_10228 and tr_A0A369SH79_A0A369SH79_9METZ_287889 are exactly identical! WARNING: Sequences tr_T1KYQ2_T1KYQ2_TETUR_32264 and tr_T1KYQ3_T1KYQ3_TETUR_32264 are exactly identical! WARNING: Sequences tr_U3JFF7_U3JFF7_FICAL_59894 and tr_A0A218V6I5_A0A218V6I5_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A3B1KE85_A0A3B1KE85_ASTMX_7994 and tr_W5UHM1_W5UHM1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A044SG69_A0A044SG69_ONCVO_6282 and tr_A0A182E2Y8_A0A182E2Y8_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A044SZK3_A0A044SZK3_ONCVO_6282 and tr_A0A182EHF6_A0A182EHF6_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A044TNI9_A0A044TNI9_ONCVO_6282 and tr_A0A182DXX3_A0A182DXX3_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A096N141_A0A096N141_PAPAN_9555 and tr_A0A2K5ZM98_A0A2K5ZM98_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0K0G4T3_A0A0K0G4T3_STRVS_75913 and tr_A0A0N5C6U6_A0A0N5C6U6_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0K0EM36_A0A0K0EM36_STRER_6248 and tr_A0A090LSV4_A0A090LSV4_STRRB_34506 are exactly identical! WARNING: Sequences tr_A0A151MFL2_A0A151MFL2_ALLMI_8496 and tr_A0A3Q0GM27_A0A3Q0GM27_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0Q3PJI6_A0A0Q3PJI6_AMAAE_12930 and tr_A0A091VLP9_A0A091VLP9_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A0Q3PJI6_A0A0Q3PJI6_AMAAE_12930 and tr_A0A087QI78_A0A087QI78_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A0Q3PJI6_A0A0Q3PJI6_AMAAE_12930 and tr_A0A091FQN1_A0A091FQN1_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A0Q3PJI6_A0A0Q3PJI6_AMAAE_12930 and tr_A0A1V4KT41_A0A1V4KT41_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0Q3PJI6_A0A0Q3PJI6_AMAAE_12930 and tr_A0A218UR19_A0A218UR19_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A026W9I1_A0A026W9I1_OOCBI_2015173 and tr_A0A0L7QW80_A0A0L7QW80_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A026W9I1_A0A026W9I1_OOCBI_2015173 and tr_A0A195B5K7_A0A195B5K7_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A194QVU4_A0A194QVU4_PAPMA_76193 and tr_A0A194Q4T3_A0A194Q4T3_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A2I0MCI7_A0A2I0MCI7_COLLI_8932 and tr_A0A1V4JX63_A0A1V4JX63_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0RVC3_A0A0V0RVC3_9BILA_6336 and tr_A0A0V1CI78_A0A0V1CI78_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0RVC3_A0A0V0RVC3_9BILA_6336 and tr_A0A0V0WI13_A0A0V0WI13_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0RVC3_A0A0V0RVC3_9BILA_6336 and tr_A0A0V1LQY9_A0A0V1LQY9_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0RVC3_A0A0V0RVC3_9BILA_6336 and tr_A0A0V0ZJE0_A0A0V0ZJE0_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0RVC3_A0A0V0RVC3_9BILA_6336 and tr_A0A0V0YK11_A0A0V0YK11_TRIPS_6337 are exactly identical! WARNING: Sequences tr_A0A0V0RVC3_A0A0V0RVC3_9BILA_6336 and tr_A0A0V1MI87_A0A0V1MI87_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V0RVC3_A0A0V0RVC3_9BILA_6336 and tr_A0A0V1NKR8_A0A0V1NKR8_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0RVC3_A0A0V0RVC3_9BILA_6336 and tr_A0A0V0TLZ1_A0A0V0TLZ1_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A151WKC6_A0A151WKC6_9HYME_64791 and tr_A0A151IWU9_A0A151IWU9_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A151WKC6_A0A151WKC6_9HYME_64791 and tr_A0A195EW19_A0A195EW19_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A151WQS6_A0A151WQS6_9HYME_64791 and tr_A0A151JMC6_A0A151JMC6_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A151WQS6_A0A151WQS6_9HYME_64791 and tr_A0A151I4J8_A0A151I4J8_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A1S3JDP2_A0A1S3JDP2_LINUN_7574 and tr_A0A1S3JDW4_A0A1S3JDW4_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3JDP2_A0A1S3JDP2_LINUN_7574 and tr_A0A1S3JED4_A0A1S3JED4_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3JDP2_A0A1S3JDP2_LINUN_7574 and tr_A0A1S3JF50_A0A1S3JF50_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3R1A2_A0A1S3R1A2_SALSA_8030 and tr_A0A060VNN5_A0A060VNN5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3R968_A0A1S3R968_SALSA_8030 and tr_A0A1S3S423_A0A1S3S423_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1L8FGS1_A0A1L8FGS1_XENLA_8355 and tr_A9JS48_A9JS48_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A1L8GG24_A0A1L8GG24_XENLA_8355 and tr_A0A1L8GMP9_A0A1L8GMP9_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A1D1VDZ8_A0A1D1VDZ8_RAMVA_947166 and tr_A0A1D1VGG6_A0A1D1VGG6_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A060WRZ6_A0A060WRZ6_ONCMY_8022 and tr_A0A060X0C3_A0A060X0C3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2D0QEV9_A0A2D0QEV9_ICTPU_7998 and tr_W5UGE7_W5UGE7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4A5A9_A0A2U4A5A9_TURTR_9739 and tr_A0A2Y9LC60_A0A2Y9LC60_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4A5A9_A0A2U4A5A9_TURTR_9739 and tr_A0A2Y9SKV5_A0A2Y9SKV5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4A5A9_A0A2U4A5A9_TURTR_9739 and tr_A0A384B9N6_A0A384B9N6_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4ANB3_A0A2U4ANB3_TURTR_9739 and tr_A0A2Y9PYQ8_A0A2Y9PYQ8_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4ANB3_A0A2U4ANB3_TURTR_9739 and tr_A0A2Y9SRH4_A0A2Y9SRH4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4CS34_A0A2U4CS34_TURTR_9739 and tr_A0A2Y9PQ73_A0A2Y9PQ73_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 211 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y6N6/3_mltree/Q9Y6N6.raxml.reduced.phy Alignment comprises 1 partitions and 86 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 86 / 86 Gaps: 6.46 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y6N6/3_mltree/Q9Y6N6.raxml.rba Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 981 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 86 / 6880 [00:00:00] Data distribution: max. searches per worker: 10 Starting ML tree search with 20 distinct starting trees [00:00:00 -127996.055063] Initial branch length optimization [00:00:03 -106076.392257] Model parameter optimization (eps = 10.000000) [00:00:26 -105953.288117] AUTODETECT spr round 1 (radius: 5) [00:02:17 -73777.397765] AUTODETECT spr round 2 (radius: 10) [00:04:23 -56184.475709] AUTODETECT spr round 3 (radius: 15) [00:06:45 -45222.606898] AUTODETECT spr round 4 (radius: 20) [00:09:00 -40801.343314] AUTODETECT spr round 5 (radius: 25) [00:11:41 -38426.517486] SPR radius for FAST iterations: 25 (autodetect) [00:11:41 -38426.517486] Model parameter optimization (eps = 3.000000) [00:12:03 -38243.169998] FAST spr round 1 (radius: 25) [00:14:11 -30113.451328] FAST spr round 2 (radius: 25) [00:16:03 -29365.056840] FAST spr round 3 (radius: 25) [00:17:49 -29273.809930] FAST spr round 4 (radius: 25) [00:19:32 -29266.236269] FAST spr round 5 (radius: 25) [00:21:08 -29264.458275] FAST spr round 6 (radius: 25) [00:22:40 -29264.210001] FAST spr round 7 (radius: 25) [00:24:03 -29264.209989] Model parameter optimization (eps = 1.000000) [00:24:19 -29251.795663] SLOW spr round 1 (radius: 5) [00:25:58 -29243.052481] SLOW spr round 2 (radius: 5) [00:27:43 -29242.071014] SLOW spr round 3 (radius: 5) [00:29:28 -29242.068870] SLOW spr round 4 (radius: 10) [00:31:18 -29238.283041] SLOW spr round 5 (radius: 5) [00:33:24 -29229.306494] SLOW spr round 6 (radius: 5) [00:35:19 -29227.028498] SLOW spr round 7 (radius: 5) [00:37:09 -29227.028248] SLOW spr round 8 (radius: 10) [00:38:55 -29227.028238] SLOW spr round 9 (radius: 15) [00:41:13 -29225.670964] SLOW spr round 10 (radius: 5) [00:43:19 -29224.693057] SLOW spr round 11 (radius: 5) [00:45:11 -29222.972915] SLOW spr round 12 (radius: 5) [00:46:57 -29222.972862] SLOW spr round 13 (radius: 10) [00:48:47 -29222.972834] SLOW spr round 14 (radius: 15) [00:51:14 -29222.972823] SLOW spr round 15 (radius: 20) [00:54:24 -29214.989856] SLOW spr round 16 (radius: 5) [00:56:26 -29212.310742] SLOW spr round 17 (radius: 5) [00:58:17 -29212.280477] SLOW spr round 18 (radius: 10) [01:00:05 -29212.280471] SLOW spr round 19 (radius: 15) [01:02:30 -29202.986094] SLOW spr round 20 (radius: 5) [01:04:41 -29201.941633] SLOW spr round 21 (radius: 5) [01:06:36 -29201.150555] SLOW spr round 22 (radius: 5) [01:08:24 -29200.751262] SLOW spr round 23 (radius: 5) [01:10:08 -29200.749073] SLOW spr round 24 (radius: 10) [01:11:46 -29200.742324] SLOW spr round 25 (radius: 15) [01:14:09 -29199.817843] SLOW spr round 26 (radius: 5) [01:16:13 -29199.817041] SLOW spr round 27 (radius: 10) [01:18:08 -29198.579730] SLOW spr round 28 (radius: 5) [01:20:07 -29196.954519] SLOW spr round 29 (radius: 5) [01:22:00 -29196.954241] SLOW spr round 30 (radius: 10) [01:23:50 -29196.954181] SLOW spr round 31 (radius: 15) [01:26:15 -29196.954142] SLOW spr round 32 (radius: 20) [01:29:08 -29191.606085] SLOW spr round 33 (radius: 5) [01:31:14 -29191.573020] SLOW spr round 34 (radius: 10) [01:33:14 -29191.572920] SLOW spr round 35 (radius: 15) [01:35:36 -29186.450551] SLOW spr round 36 (radius: 5) [01:37:43 -29182.457822] SLOW spr round 37 (radius: 5) [01:39:38 -29182.412163] SLOW spr round 38 (radius: 10) [01:40:57] [worker #1] ML tree search #2, logLikelihood: -29031.729562 [01:41:25 -29182.408775] SLOW spr round 39 (radius: 15) [01:43:41 -29182.407950] SLOW spr round 40 (radius: 20) [01:46:41 -29182.407743] SLOW spr round 41 (radius: 25) [01:50:18 -29182.407690] Model parameter optimization (eps = 0.100000) [01:50:30] [worker #0] ML tree search #1, logLikelihood: -29179.274591 [01:50:30 -127035.544808] Initial branch length optimization [01:50:33 -106163.327952] Model parameter optimization (eps = 10.000000) [01:51:09 -106021.942786] AUTODETECT spr round 1 (radius: 5) [01:53:00 -70142.418309] AUTODETECT spr round 2 (radius: 10) [01:55:03 -52558.635938] AUTODETECT spr round 3 (radius: 15) [01:57:18 -40486.730182] AUTODETECT spr round 4 (radius: 20) [01:59:57 -35667.073430] AUTODETECT spr round 5 (radius: 25) [02:02:50 -34210.477866] SPR radius for FAST iterations: 25 (autodetect) [02:02:50 -34210.477866] Model parameter optimization (eps = 3.000000) [02:03:25 -33956.800076] FAST spr round 1 (radius: 25) [02:05:30 -29428.317422] FAST spr round 2 (radius: 25) [02:07:20 -29160.722001] FAST spr round 3 (radius: 25) [02:09:03 -29137.562283] FAST spr round 4 (radius: 25) [02:10:41 -29133.262161] FAST spr round 5 (radius: 25) [02:12:13 -29132.894764] FAST spr round 6 (radius: 25) [02:13:40 -29129.034067] FAST spr round 7 (radius: 25) [02:15:03 -29128.290102] FAST spr round 8 (radius: 25) [02:16:28 -29128.289469] Model parameter optimization (eps = 1.000000) [02:16:43 -29118.841822] SLOW spr round 1 (radius: 5) [02:18:28 -29108.550307] SLOW spr round 2 (radius: 5) [02:20:13 -29105.581894] SLOW spr round 3 (radius: 5) [02:22:01 -29105.579234] SLOW spr round 4 (radius: 10) [02:23:46 -29100.844891] SLOW spr round 5 (radius: 5) [02:25:51 -29098.212426] SLOW spr round 6 (radius: 5) [02:27:46 -29098.211300] SLOW spr round 7 (radius: 10) [02:29:30 -29098.211253] SLOW spr round 8 (radius: 15) [02:31:42 -29098.211244] SLOW spr round 9 (radius: 20) [02:34:33 -29097.010856] SLOW spr round 10 (radius: 5) [02:36:40 -29097.010735] SLOW spr round 11 (radius: 10) [02:38:00] [worker #1] ML tree search #4, logLikelihood: -29036.596051 [02:38:40 -29097.010730] SLOW spr round 12 (radius: 15) [02:40:57 -29097.010729] SLOW spr round 13 (radius: 20) [02:43:56 -29097.010728] SLOW spr round 14 (radius: 25) [02:47:15 -29097.010727] Model parameter optimization (eps = 0.100000) [02:47:21] [worker #0] ML tree search #3, logLikelihood: -29096.967805 [02:47:21 -127300.809069] Initial branch length optimization [02:47:24 -105735.128932] Model parameter optimization (eps = 10.000000) [02:47:50 -105510.535838] AUTODETECT spr round 1 (radius: 5) [02:49:41 -71911.557746] AUTODETECT spr round 2 (radius: 10) [02:51:43 -55207.943321] AUTODETECT spr round 3 (radius: 15) [02:54:00 -46057.193545] AUTODETECT spr round 4 (radius: 20) [02:56:29 -39258.993429] AUTODETECT spr round 5 (radius: 25) [02:59:19 -38530.348136] SPR radius for FAST iterations: 25 (autodetect) [02:59:19 -38530.348136] Model parameter optimization (eps = 3.000000) [02:59:38 -38353.317899] FAST spr round 1 (radius: 25) [03:01:41 -33242.012211] FAST spr round 2 (radius: 25) [03:03:24 -30904.999145] FAST spr round 3 (radius: 25) [03:04:59 -29598.773800] FAST spr round 4 (radius: 25) [03:06:33 -29091.521906] FAST spr round 5 (radius: 25) [03:08:10 -29032.123509] FAST spr round 6 (radius: 25) [03:09:43 -29031.041093] FAST spr round 7 (radius: 25) [03:11:15 -29031.039931] Model parameter optimization (eps = 1.000000) [03:11:28 -29027.644413] SLOW spr round 1 (radius: 5) [03:13:14 -29020.868493] SLOW spr round 2 (radius: 5) [03:14:57 -29017.971233] SLOW spr round 3 (radius: 5) [03:16:33 -29017.970776] SLOW spr round 4 (radius: 10) [03:18:12 -29017.970389] SLOW spr round 5 (radius: 15) [03:20:44 -29016.786672] SLOW spr round 6 (radius: 5) [03:22:46 -29016.786293] SLOW spr round 7 (radius: 10) [03:24:43 -29016.785989] SLOW spr round 8 (radius: 15) [03:27:10 -29016.785707] SLOW spr round 9 (radius: 20) [03:30:13 -29016.785443] SLOW spr round 10 (radius: 25) [03:33:29 -29016.785197] Model parameter optimization (eps = 0.100000) [03:33:33] [worker #0] ML tree search #5, logLikelihood: -29016.768796 [03:33:33 -128896.094799] Initial branch length optimization [03:33:36 -107244.350568] Model parameter optimization (eps = 10.000000) [03:33:59 -107069.542814] AUTODETECT spr round 1 (radius: 5) [03:35:47 -72549.177484] AUTODETECT spr round 2 (radius: 10) [03:37:48 -56564.100694] AUTODETECT spr round 3 (radius: 15) [03:40:03 -48058.361723] AUTODETECT spr round 4 (radius: 20) [03:42:43 -42910.149154] AUTODETECT spr round 5 (radius: 25) [03:45:55 -39871.908633] SPR radius for FAST iterations: 25 (autodetect) [03:45:55 -39871.908633] Model parameter optimization (eps = 3.000000) [03:46:18 -39668.135903] FAST spr round 1 (radius: 25) [03:48:27 -31155.443970] FAST spr round 2 (radius: 25) [03:50:09 -29410.940015] FAST spr round 3 (radius: 25) [03:50:11] [worker #1] ML tree search #6, logLikelihood: -29022.961454 [03:51:46 -29133.826967] FAST spr round 4 (radius: 25) [03:53:22 -29112.153782] FAST spr round 5 (radius: 25) [03:54:54 -29109.712654] FAST spr round 6 (radius: 25) [03:56:25 -29104.411787] FAST spr round 7 (radius: 25) [03:57:58 -29097.065977] FAST spr round 8 (radius: 25) [03:59:29 -29097.064956] Model parameter optimization (eps = 1.000000) [03:59:49 -29078.363355] SLOW spr round 1 (radius: 5) [04:01:40 -29068.526795] SLOW spr round 2 (radius: 5) [04:03:21 -29068.033992] SLOW spr round 3 (radius: 5) [04:04:54 -29067.408747] SLOW spr round 4 (radius: 5) [04:06:29 -29067.121382] SLOW spr round 5 (radius: 5) [04:08:09 -29067.120443] SLOW spr round 6 (radius: 10) [04:09:52 -29066.852577] SLOW spr round 7 (radius: 5) [04:11:54 -29066.852525] SLOW spr round 8 (radius: 10) [04:13:47 -29066.852522] SLOW spr round 9 (radius: 15) [04:16:09 -29066.852520] SLOW spr round 10 (radius: 20) [04:19:14 -29066.348040] SLOW spr round 11 (radius: 5) [04:21:15 -29066.345353] SLOW spr round 12 (radius: 10) [04:23:11 -29066.345310] SLOW spr round 13 (radius: 15) [04:25:26 -29066.345309] SLOW spr round 14 (radius: 20) [04:28:34 -29066.345308] SLOW spr round 15 (radius: 25) [04:32:28 -29066.345276] Model parameter optimization (eps = 0.100000) [04:32:36] [worker #0] ML tree search #7, logLikelihood: -29066.270963 [04:32:36 -127662.159769] Initial branch length optimization [04:32:41 -106441.535520] Model parameter optimization (eps = 10.000000) [04:33:05 -106303.265934] AUTODETECT spr round 1 (radius: 5) [04:34:49 -70563.290851] AUTODETECT spr round 2 (radius: 10) [04:36:40 -51611.567986] AUTODETECT spr round 3 (radius: 15) [04:39:27 -41087.061072] AUTODETECT spr round 4 (radius: 20) [04:41:41 -36663.296025] AUTODETECT spr round 5 (radius: 25) [04:42:19] [worker #1] ML tree search #8, logLikelihood: -29045.018407 [04:44:15 -35276.849507] SPR radius for FAST iterations: 25 (autodetect) [04:44:15 -35276.849507] Model parameter optimization (eps = 3.000000) [04:44:33 -35142.720338] FAST spr round 1 (radius: 25) [04:46:31 -29467.965985] FAST spr round 2 (radius: 25) [04:48:06 -29134.361141] FAST spr round 3 (radius: 25) [04:49:30 -29087.212906] FAST spr round 4 (radius: 25) [04:50:50 -29076.585234] FAST spr round 5 (radius: 25) [04:52:04 -29076.584940] Model parameter optimization (eps = 1.000000) [04:52:15 -29074.742730] SLOW spr round 1 (radius: 5) [04:53:48 -29067.544929] SLOW spr round 2 (radius: 5) [04:55:18 -29065.028766] SLOW spr round 3 (radius: 5) [04:56:46 -29065.028623] SLOW spr round 4 (radius: 10) [04:58:22 -29061.649463] SLOW spr round 5 (radius: 5) [05:00:13 -29058.990956] SLOW spr round 6 (radius: 5) [05:01:52 -29058.833615] SLOW spr round 7 (radius: 5) [05:03:24 -29058.832933] SLOW spr round 8 (radius: 10) [05:04:55 -29058.510089] SLOW spr round 9 (radius: 5) [05:06:40 -29058.510084] SLOW spr round 10 (radius: 10) [05:08:17 -29058.243299] SLOW spr round 11 (radius: 5) [05:10:02 -29058.243298] SLOW spr round 12 (radius: 10) [05:11:41 -29058.243297] SLOW spr round 13 (radius: 15) [05:13:49 -29057.145510] SLOW spr round 14 (radius: 5) [05:15:44 -29057.144461] SLOW spr round 15 (radius: 10) [05:17:28 -29057.144451] SLOW spr round 16 (radius: 15) [05:19:32 -29057.144450] SLOW spr round 17 (radius: 20) [05:22:21 -29055.182854] SLOW spr round 18 (radius: 5) [05:24:12 -29055.182736] SLOW spr round 19 (radius: 10) [05:25:57 -29055.182720] SLOW spr round 20 (radius: 15) [05:28:02 -29055.182716] SLOW spr round 21 (radius: 20) [05:30:57 -29055.182714] SLOW spr round 22 (radius: 25) [05:34:26 -29052.981193] SLOW spr round 23 (radius: 5) [05:36:21 -29035.115976] SLOW spr round 24 (radius: 5) [05:38:02 -29033.524924] SLOW spr round 25 (radius: 5) [05:39:34 -29033.521866] SLOW spr round 26 (radius: 10) [05:41:08 -29033.520614] SLOW spr round 27 (radius: 15) [05:43:18 -29033.520099] SLOW spr round 28 (radius: 20) [05:46:08 -29033.519886] SLOW spr round 29 (radius: 25) [05:49:35 -29033.519797] Model parameter optimization (eps = 0.100000) [05:49:39] [worker #0] ML tree search #9, logLikelihood: -29033.482700 [05:49:39 -127876.574116] Initial branch length optimization [05:49:42 -106797.087462] Model parameter optimization (eps = 10.000000) [05:50:04 -106633.803620] AUTODETECT spr round 1 (radius: 5) [05:51:40 -71315.942594] AUTODETECT spr round 2 (radius: 10) [05:53:26 -53115.779365] AUTODETECT spr round 3 (radius: 15) [05:55:23 -42801.703893] AUTODETECT spr round 4 (radius: 20) [05:57:33 -36093.648606] AUTODETECT spr round 5 (radius: 25) [06:00:12 -34362.651194] SPR radius for FAST iterations: 25 (autodetect) [06:00:12 -34362.651194] Model parameter optimization (eps = 3.000000) [06:00:27] [worker #1] ML tree search #10, logLikelihood: -28999.060016 [06:00:36 -34227.280288] FAST spr round 1 (radius: 25) [06:02:30 -29458.737130] FAST spr round 2 (radius: 25) [06:04:06 -29102.689117] FAST spr round 3 (radius: 25) [06:05:29 -29066.873900] FAST spr round 4 (radius: 25) [06:06:48 -29055.776822] FAST spr round 5 (radius: 25) [06:08:03 -29050.889490] FAST spr round 6 (radius: 25) [06:09:16 -29050.888736] Model parameter optimization (eps = 1.000000) [06:09:29 -29047.135298] SLOW spr round 1 (radius: 5) [06:11:01 -29039.462733] SLOW spr round 2 (radius: 5) [06:12:31 -29039.462028] SLOW spr round 3 (radius: 10) [06:14:03 -29037.451405] SLOW spr round 4 (radius: 5) [06:15:55 -29026.575681] SLOW spr round 5 (radius: 5) [06:17:36 -29026.308867] SLOW spr round 6 (radius: 5) [06:19:10 -29026.308562] SLOW spr round 7 (radius: 10) [06:20:42 -29025.731939] SLOW spr round 8 (radius: 5) [06:22:26 -29025.730924] SLOW spr round 9 (radius: 10) [06:24:03 -29025.730910] SLOW spr round 10 (radius: 15) [06:26:09 -29017.624511] SLOW spr round 11 (radius: 5) [06:28:01 -29017.279047] SLOW spr round 12 (radius: 5) [06:29:40 -29017.279007] SLOW spr round 13 (radius: 10) [06:31:18 -29017.278980] SLOW spr round 14 (radius: 15) [06:33:29 -29017.278979] SLOW spr round 15 (radius: 20) [06:36:13 -29016.085261] SLOW spr round 16 (radius: 5) [06:38:04 -29015.689651] SLOW spr round 17 (radius: 5) [06:39:43 -29015.689047] SLOW spr round 18 (radius: 10) [06:41:19 -29015.689034] SLOW spr round 19 (radius: 15) [06:43:28 -29015.689032] SLOW spr round 20 (radius: 20) [06:46:13 -29015.194644] SLOW spr round 21 (radius: 5) [06:48:09 -29015.194615] SLOW spr round 22 (radius: 10) [06:49:55 -29015.194614] SLOW spr round 23 (radius: 15) [06:51:56 -29015.194613] SLOW spr round 24 (radius: 20) [06:54:39 -29015.194604] SLOW spr round 25 (radius: 25) [06:57:51 -29015.194604] Model parameter optimization (eps = 0.100000) [06:57:56] [worker #0] ML tree search #11, logLikelihood: -29015.112189 [06:57:56 -128147.222922] Initial branch length optimization [06:57:59 -107300.445360] Model parameter optimization (eps = 10.000000) [06:58:29 -107233.388213] AUTODETECT spr round 1 (radius: 5) [07:00:17 -69558.104687] AUTODETECT spr round 2 (radius: 10) [07:02:00 -50468.678151] AUTODETECT spr round 3 (radius: 15) [07:03:56 -42181.194758] AUTODETECT spr round 4 (radius: 20) [07:06:04 -37302.789064] AUTODETECT spr round 5 (radius: 25) [07:08:37 -35364.020101] SPR radius for FAST iterations: 25 (autodetect) [07:08:37 -35364.020101] Model parameter optimization (eps = 3.000000) [07:08:57 -35272.030573] FAST spr round 1 (radius: 25) [07:10:49 -29571.751730] FAST spr round 2 (radius: 25) [07:12:21 -29131.604169] FAST spr round 3 (radius: 25) [07:13:43 -29058.720149] FAST spr round 4 (radius: 25) [07:15:04 -29050.567883] FAST spr round 5 (radius: 25) [07:16:23 -29049.053232] FAST spr round 6 (radius: 25) [07:17:33] [worker #1] ML tree search #12, logLikelihood: -28992.782347 [07:17:41 -29048.852330] FAST spr round 7 (radius: 25) [07:18:59 -29048.852279] Model parameter optimization (eps = 1.000000) [07:19:11 -29042.733294] SLOW spr round 1 (radius: 5) [07:20:44 -29034.480468] SLOW spr round 2 (radius: 5) [07:22:17 -29024.231854] SLOW spr round 3 (radius: 5) [07:23:44 -29023.684705] SLOW spr round 4 (radius: 5) [07:25:10 -29023.683980] SLOW spr round 5 (radius: 10) [07:26:42 -29023.158575] SLOW spr round 6 (radius: 5) [07:28:30 -29023.158569] SLOW spr round 7 (radius: 10) [07:30:12 -29023.158568] SLOW spr round 8 (radius: 15) [07:32:24 -29022.212258] SLOW spr round 9 (radius: 5) [07:34:16 -29022.212197] SLOW spr round 10 (radius: 10) [07:36:00 -29022.212196] SLOW spr round 11 (radius: 15) [07:38:09 -29022.212196] SLOW spr round 12 (radius: 20) [07:41:27 -29019.282803] SLOW spr round 13 (radius: 5) [07:43:25 -29018.420941] SLOW spr round 14 (radius: 5) [07:45:06 -29018.420060] SLOW spr round 15 (radius: 10) [07:46:42 -29017.952060] SLOW spr round 16 (radius: 5) [07:48:29 -29017.951794] SLOW spr round 17 (radius: 10) [07:50:09 -29017.951785] SLOW spr round 18 (radius: 15) [07:52:20 -29017.951777] SLOW spr round 19 (radius: 20) [07:55:30 -29017.951776] SLOW spr round 20 (radius: 25) [07:59:32 -29017.951776] Model parameter optimization (eps = 0.100000) [07:59:36] [worker #0] ML tree search #13, logLikelihood: -29017.930837 [07:59:36 -126983.110555] Initial branch length optimization [07:59:39 -106375.289497] Model parameter optimization (eps = 10.000000) [07:59:59 -106232.503516] AUTODETECT spr round 1 (radius: 5) [08:01:42 -68784.415333] AUTODETECT spr round 2 (radius: 10) [08:03:30 -51430.877518] AUTODETECT spr round 3 (radius: 15) [08:05:28 -40417.130987] AUTODETECT spr round 4 (radius: 20) [08:07:39 -34854.711936] AUTODETECT spr round 5 (radius: 25) [08:10:25 -33760.059489] SPR radius for FAST iterations: 25 (autodetect) [08:10:25 -33760.059489] Model parameter optimization (eps = 3.000000) [08:10:45 -33634.651232] FAST spr round 1 (radius: 25) [08:12:42 -29397.542681] FAST spr round 2 (radius: 25) [08:14:15 -29118.740260] FAST spr round 3 (radius: 25) [08:15:39 -29040.466693] FAST spr round 4 (radius: 25) [08:17:03 -29035.073588] FAST spr round 5 (radius: 25) [08:18:23 -29031.560379] FAST spr round 6 (radius: 25) [08:19:44 -29031.560347] Model parameter optimization (eps = 1.000000) [08:19:55 -29025.584390] SLOW spr round 1 (radius: 5) [08:21:31 -29016.063499] SLOW spr round 2 (radius: 5) [08:23:04 -29015.562695] SLOW spr round 3 (radius: 5) [08:24:32 -29015.561896] SLOW spr round 4 (radius: 10) [08:26:03 -29013.906207] SLOW spr round 5 (radius: 5) [08:27:54 -29013.584659] SLOW spr round 6 (radius: 5) [08:29:35 -29013.584021] SLOW spr round 7 (radius: 10) [08:31:13 -29013.584010] SLOW spr round 8 (radius: 15) [08:32:29] [worker #1] ML tree search #14, logLikelihood: -29054.198074 [08:33:27 -29011.463110] SLOW spr round 9 (radius: 5) [08:35:19 -29011.462083] SLOW spr round 10 (radius: 10) [08:37:04 -29011.462069] SLOW spr round 11 (radius: 15) [08:39:15 -29011.462069] SLOW spr round 12 (radius: 20) [08:42:14 -29011.462039] SLOW spr round 13 (radius: 25) [08:45:52 -29011.462012] Model parameter optimization (eps = 0.100000) [08:45:58] [worker #0] ML tree search #15, logLikelihood: -29011.454249 [08:45:58 -128106.644950] Initial branch length optimization [08:46:01 -107093.167109] Model parameter optimization (eps = 10.000000) [08:46:23 -106950.612472] AUTODETECT spr round 1 (radius: 5) [08:48:01 -69317.893314] AUTODETECT spr round 2 (radius: 10) [08:49:49 -53936.939644] AUTODETECT spr round 3 (radius: 15) [08:51:48 -46299.010620] AUTODETECT spr round 4 (radius: 20) [08:54:20 -42172.337343] AUTODETECT spr round 5 (radius: 25) [08:58:01 -37693.564192] SPR radius for FAST iterations: 25 (autodetect) [08:58:01 -37693.564192] Model parameter optimization (eps = 3.000000) [08:58:21 -37483.318538] FAST spr round 1 (radius: 25) [09:00:17 -29661.279618] FAST spr round 2 (radius: 25) [09:01:56 -29227.300217] FAST spr round 3 (radius: 25) [09:03:24 -29136.337180] FAST spr round 4 (radius: 25) [09:04:47 -29119.699905] FAST spr round 5 (radius: 25) [09:06:06 -29117.780655] FAST spr round 6 (radius: 25) [09:07:24 -29117.778888] Model parameter optimization (eps = 1.000000) [09:07:39 -29089.404008] SLOW spr round 1 (radius: 5) [09:09:12 -29065.615560] SLOW spr round 2 (radius: 5) [09:10:45 -29063.419337] SLOW spr round 3 (radius: 5) [09:12:19 -29063.418543] SLOW spr round 4 (radius: 10) [09:13:55 -29061.056409] SLOW spr round 5 (radius: 5) [09:15:45 -29061.055837] SLOW spr round 6 (radius: 10) [09:17:25 -29060.788945] SLOW spr round 7 (radius: 5) [09:19:13 -29060.788898] SLOW spr round 8 (radius: 10) [09:20:51 -29060.788897] SLOW spr round 9 (radius: 15) [09:22:54 -29058.463878] SLOW spr round 10 (radius: 5) [09:24:49 -29048.529027] SLOW spr round 11 (radius: 5) [09:26:33 -29043.780236] SLOW spr round 12 (radius: 5) [09:28:10 -29042.436529] SLOW spr round 13 (radius: 5) [09:29:44 -29042.436299] SLOW spr round 14 (radius: 10) [09:31:16 -29042.436145] SLOW spr round 15 (radius: 15) [09:33:22 -29042.436034] SLOW spr round 16 (radius: 20) [09:35:57 -29042.435947] SLOW spr round 17 (radius: 25) [09:39:05 -29039.427569] SLOW spr round 18 (radius: 5) [09:41:00 -29039.342212] SLOW spr round 19 (radius: 10) [09:42:48 -29039.341987] SLOW spr round 20 (radius: 15) [09:44:57 -29039.341964] SLOW spr round 21 (radius: 20) [09:47:48 -29039.296730] SLOW spr round 22 (radius: 25) [09:51:08 -29039.216828] Model parameter optimization (eps = 0.100000) [09:51:17] [worker #0] ML tree search #17, logLikelihood: -29038.994235 [09:51:17 -128068.394251] Initial branch length optimization [09:51:19 -106514.543224] Model parameter optimization (eps = 10.000000) [09:51:40 -106461.910837] AUTODETECT spr round 1 (radius: 5) [09:52:08] [worker #1] ML tree search #16, logLikelihood: -29054.521590 [09:53:39 -71284.392594] AUTODETECT spr round 2 (radius: 10) [09:55:36 -53637.067899] AUTODETECT spr round 3 (radius: 15) [09:57:47 -42709.190542] AUTODETECT spr round 4 (radius: 20) [10:00:25 -40130.636918] AUTODETECT spr round 5 (radius: 25) [10:03:22 -39376.838438] SPR radius for FAST iterations: 25 (autodetect) [10:03:22 -39376.838438] Model parameter optimization (eps = 3.000000) [10:03:42 -39263.361119] FAST spr round 1 (radius: 25) [10:05:51 -31858.967964] FAST spr round 2 (radius: 25) [10:07:38 -29881.937448] FAST spr round 3 (radius: 25) [10:09:17 -29374.218255] FAST spr round 4 (radius: 25) [10:10:55 -29136.424979] FAST spr round 5 (radius: 25) [10:12:32 -29061.162640] FAST spr round 6 (radius: 25) [10:13:55 -29058.558903] FAST spr round 7 (radius: 25) [10:15:16 -29058.558657] Model parameter optimization (eps = 1.000000) [10:15:28 -29050.940557] SLOW spr round 1 (radius: 5) [10:17:10 -29045.788845] SLOW spr round 2 (radius: 5) [10:18:49 -29045.431509] SLOW spr round 3 (radius: 5) [10:20:30 -29044.726412] SLOW spr round 4 (radius: 5) [10:22:12 -29044.726216] SLOW spr round 5 (radius: 10) [10:23:57 -29043.931509] SLOW spr round 6 (radius: 5) [10:26:02 -29039.476132] SLOW spr round 7 (radius: 5) [10:27:54 -29039.472174] SLOW spr round 8 (radius: 10) [10:29:34 -29032.291451] SLOW spr round 9 (radius: 5) [10:31:26 -29026.722546] SLOW spr round 10 (radius: 5) [10:33:15 -29026.412150] SLOW spr round 11 (radius: 5) [10:34:58 -29026.411992] SLOW spr round 12 (radius: 10) [10:36:44 -29026.411988] SLOW spr round 13 (radius: 15) [10:39:10 -29025.797475] SLOW spr round 14 (radius: 5) [10:41:13 -29025.797430] SLOW spr round 15 (radius: 10) [10:43:08 -29025.797429] SLOW spr round 16 (radius: 15) [10:45:21 -29025.797429] SLOW spr round 17 (radius: 20) [10:48:26 -29024.503121] SLOW spr round 18 (radius: 5) [10:50:30 -29024.497049] SLOW spr round 19 (radius: 10) [10:52:27 -29024.494821] SLOW spr round 20 (radius: 15) [10:54:46 -29021.109304] SLOW spr round 21 (radius: 5) [10:56:52 -29021.107978] SLOW spr round 22 (radius: 10) [10:58:50 -29021.107597] SLOW spr round 23 (radius: 15) [11:01:03 -29021.107344] SLOW spr round 24 (radius: 20) [11:04:05 -29019.970458] SLOW spr round 25 (radius: 5) [11:06:09 -29019.970400] SLOW spr round 26 (radius: 10) [11:07:46] [worker #1] ML tree search #18, logLikelihood: -29063.645828 [11:08:08 -29019.970370] SLOW spr round 27 (radius: 15) [11:10:27 -29019.970344] SLOW spr round 28 (radius: 20) [11:13:35 -29019.970320] SLOW spr round 29 (radius: 25) [11:17:11 -29016.337513] SLOW spr round 30 (radius: 5) [11:19:17 -29001.050498] SLOW spr round 31 (radius: 5) [11:21:11 -29000.187281] SLOW spr round 32 (radius: 5) [11:22:56 -29000.185062] SLOW spr round 33 (radius: 10) [11:24:41 -29000.184728] SLOW spr round 34 (radius: 15) [11:27:06 -29000.184677] SLOW spr round 35 (radius: 20) [11:30:14 -29000.184669] SLOW spr round 36 (radius: 25) [11:33:52 -29000.184667] Model parameter optimization (eps = 0.100000) [11:34:00] [worker #0] ML tree search #19, logLikelihood: -29000.062978 [12:21:09] [worker #1] ML tree search #20, logLikelihood: -29048.287278 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.278234,0.284442) (0.081356,0.397729) (0.326549,0.827154) (0.313861,1.970280) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -28992.782347 AIC score: 61915.564695 / AICc score: 7788295.564695 / BIC score: 66738.357132 Free parameters (model + branch lengths): 1965 WARNING: Number of free parameters (K=1965) is larger than alignment size (n=86). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y6N6/3_mltree/Q9Y6N6.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y6N6/3_mltree/Q9Y6N6.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y6N6/3_mltree/Q9Y6N6.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y6N6/3_mltree/Q9Y6N6.raxml.log Analysis started: 06-Jul-2021 02:53:09 / finished: 06-Jul-2021 15:14:18 Elapsed time: 44469.363 seconds Consumed energy: 3799.104 Wh (= 19 km in an electric car, or 95 km with an e-scooter!)