RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 03-Jun-2021 02:37:42 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9Y6H8/2_msa/Q9Y6H8_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9Y6H8/3_mltree/Q9Y6H8.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9Y6H8/4_raxmlng_ancestral/Q9Y6H8 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622677062 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9Y6H8/2_msa/Q9Y6H8_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 435 sites WARNING: Sequences tr_F1N9K3_F1N9K3_CHICK_9031 and sp_P14154_CXA1_CHICK_9031 are exactly identical! WARNING: Sequences sp_P18861_CXG1_CHICK_9031 and tr_G1NDG5_G1NDG5_MELGA_9103 are exactly identical! WARNING: Sequences tr_Q8UVE3_Q8UVE3_CHICK_9031 and tr_U3JT30_U3JT30_FICAL_59894 are exactly identical! WARNING: Sequences tr_Q8UVE3_Q8UVE3_CHICK_9031 and tr_R0M753_R0M753_ANAPL_8839 are exactly identical! WARNING: Sequences tr_Q8UVE3_Q8UVE3_CHICK_9031 and tr_A0A151MW15_A0A151MW15_ALLMI_8496 are exactly identical! WARNING: Sequences tr_Q8UVE3_Q8UVE3_CHICK_9031 and tr_A0A2I0MPP5_A0A2I0MPP5_COLLI_8932 are exactly identical! WARNING: Sequences tr_Q8UVE3_Q8UVE3_CHICK_9031 and tr_A0A1V4KFK4_A0A1V4KFK4_PATFA_372326 are exactly identical! WARNING: Sequences tr_Q8UVE3_Q8UVE3_CHICK_9031 and tr_A0A218V7V3_A0A218V7V3_9PASE_299123 are exactly identical! WARNING: Sequences tr_Q8UVE3_Q8UVE3_CHICK_9031 and tr_A0A226NEP6_A0A226NEP6_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q8UVE3_Q8UVE3_CHICK_9031 and tr_A0A226PW15_A0A226PW15_COLVI_9014 are exactly identical! WARNING: Sequences sp_P28229_CXG1_MOUSE_10090 and tr_G3HLL1_G3HLL1_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P28229_CXG1_MOUSE_10090 and sp_A4GG66_CXG1_RAT_10116 are exactly identical! WARNING: Sequences sp_P28229_CXG1_MOUSE_10090 and tr_I3MLG8_I3MLG8_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P28229_CXG1_MOUSE_10090 and tr_A0A1U7Q267_A0A1U7Q267_MESAU_10036 are exactly identical! WARNING: Sequences sp_P28229_CXG1_MOUSE_10090 and sp_Q6PYT3_CXG1_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3Z8M1_M3Z8M1_MUSPF_9669 and tr_A0A2Y9KW86_A0A2Y9KW86_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A3B3HR27_A0A3B3HR27_ORYLA_8090 and tr_A0A3B5QZX4_A0A3B5QZX4_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A3B3HR27_A0A3B3HR27_ORYLA_8090 and tr_I3IYR0_I3IYR0_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B3HR27_A0A3B3HR27_ORYLA_8090 and tr_H2UIE6_H2UIE6_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A0A3B3HR27_A0A3B3HR27_ORYLA_8090 and tr_Q4RMJ5_Q4RMJ5_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A3B3HR27_A0A3B3HR27_ORYLA_8090 and tr_A0A2I4CRP9_A0A2I4CRP9_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_A0A2I2ZQJ3_A0A2I2ZQJ3_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_A0A2J8UYM8_A0A2J8UYM8_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_H2QD76_H2QD76_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and sp_P36383_CXG1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_F7G5P0_F7G5P0_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_G7PV07_G7PV07_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_A0A096MKN0_A0A096MKN0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_A0A0D9SCE4_A0A0D9SCE4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_A0A2K5KX84_A0A2K5KX84_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_A0A2K6APT8_A0A2K6APT8_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_A0A2K5XTJ5_A0A2K5XTJ5_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_A0A2R8ZCV4_A0A2R8ZCV4_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3H8J4_G3H8J4_CRIGR_10029 and tr_A0A1U7QV52_A0A1U7QV52_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A2I2ZC67_A0A2I2ZC67_GORGO_9595 and sp_P36382_CXA5_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q8MHW5_CXB2_GORGO_9595 and tr_H2RAA6_H2RAA6_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q8MHW5_CXB2_GORGO_9595 and sp_P29033_CXB2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q8MHW5_CXB2_GORGO_9595 and tr_A0A2R8ZIA2_A0A2R8ZIA2_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8XT30_A0A2J8XT30_PONAB_9601 and tr_A0A2J8IZT7_A0A2J8IZT7_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2J8XT30_A0A2J8XT30_PONAB_9601 and tr_A0A2R8ZBI8_A0A2R8ZBI8_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2PK80_H2PK80_PONAB_9601 and sp_P17302_CXA1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1K942_G1K942_ANOCA_28377 and tr_K7FJJ3_K7FJJ3_PELSI_13735 are exactly identical! WARNING: Sequences sp_Q6TYA7_CXA1_RABIT_9986 and tr_F1SF43_F1SF43_PIG_9823 are exactly identical! WARNING: Sequences sp_Q6TYA7_CXA1_RABIT_9986 and tr_D2HKG1_D2HKG1_AILME_9646 are exactly identical! WARNING: Sequences sp_Q6TYA7_CXA1_RABIT_9986 and tr_M3X8Y2_M3X8Y2_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q6TYA7_CXA1_RABIT_9986 and tr_A0A2U3W669_A0A2U3W669_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q6TYA7_CXA1_RABIT_9986 and tr_A0A384C3C9_A0A384C3C9_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A140T8E4_A0A140T8E4_CANLF_9615 and tr_A0A2I2U189_A0A2I2U189_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A2I3TGE0_A0A2I3TGE0_PANTR_9598 and tr_A0A2R8ZQN8_A0A2R8ZQN8_PANPA_9597 are exactly identical! WARNING: Sequences tr_W5QFD5_W5QFD5_SHEEP_9940 and sp_P18246_CXA1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F6VTH7_F6VTH7_MACMU_9544 and tr_G7P419_G7P419_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7D0V5_F7D0V5_MACMU_9544 and tr_A0A2K6BDF7_A0A2K6BDF7_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7GSB4_F7GSB4_MACMU_9544 and tr_G7NTQ9_G7NTQ9_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7GSB4_F7GSB4_MACMU_9544 and tr_A0A096NXH7_A0A096NXH7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7GSB4_F7GSB4_MACMU_9544 and tr_A0A0D9SDN2_A0A0D9SDN2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7GSB4_F7GSB4_MACMU_9544 and tr_A0A2K5KLQ6_A0A2K5KLQ6_CERAT_9531 are exactly identical! WARNING: Sequences tr_H0YPP7_H0YPP7_TAEGU_59729 and tr_A0A093PTI5_A0A093PTI5_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZNN0_H0ZNN0_TAEGU_59729 and tr_U3KLL1_U3KLL1_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZNN0_H0ZNN0_TAEGU_59729 and tr_A0A091F0I3_A0A091F0I3_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZNN0_H0ZNN0_TAEGU_59729 and tr_A0A093PIW7_A0A093PIW7_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZNN0_H0ZNN0_TAEGU_59729 and tr_A0A218V456_A0A218V456_9PASE_299123 are exactly identical! WARNING: Sequences tr_G7NTG4_G7NTG4_MACFA_9541 and tr_A0A0D9S907_A0A0D9S907_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G7P396_G7P396_MACFA_9541 and tr_A0A0D9RUJ6_A0A0D9RUJ6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_U3KKB2_U3KKB2_FICAL_59894 and tr_A0A091F5C5_A0A091F5C5_CORBR_85066 are exactly identical! WARNING: Sequences tr_R0LB91_R0LB91_ANAPL_8839 and tr_A0A226N3V8_A0A226N3V8_CALSU_9009 are exactly identical! WARNING: Sequences tr_R0LB91_R0LB91_ANAPL_8839 and tr_A0A226P471_A0A226P471_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A151LZI4_A0A151LZI4_ALLMI_8496 and tr_A0A1U7RVT4_A0A1U7RVT4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151M322_A0A151M322_ALLMI_8496 and tr_A0A1U7S1M8_A0A1U7S1M8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091J8W4_A0A091J8W4_EGRGA_188379 and tr_A0A091W1V0_A0A091W1V0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091J8W4_A0A091J8W4_EGRGA_188379 and tr_A0A087QVP5_A0A087QVP5_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091J8W4_A0A091J8W4_EGRGA_188379 and tr_A0A0A0A691_A0A0A0A691_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091JHV2_A0A091JHV2_EGRGA_188379 and tr_A0A0A0AMW7_A0A0A0AMW7_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091JNA7_A0A091JNA7_EGRGA_188379 and tr_A0A087RKV2_A0A087RKV2_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JNA7_A0A091JNA7_EGRGA_188379 and tr_A0A099ZVP1_A0A099ZVP1_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2I0MU91_A0A2I0MU91_COLLI_8932 and tr_A0A1V4JLR1_A0A1V4JLR1_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1S3RB36_A0A1S3RB36_SALSA_8030 and tr_A0A060VMF1_A0A060VMF1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MND0_A0A226MND0_CALSU_9009 and tr_A0A226NVA7_A0A226NVA7_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NGN4_A0A226NGN4_CALSU_9009 and tr_A0A226PCQ5_A0A226PCQ5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2K5KKI7_A0A2K5KKI7_CERAT_9531 and tr_A0A2K5YMG1_A0A2K5YMG1_MANLE_9568 are exactly identical! WARNING: Duplicate sequences found: 79 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9Y6H8/4_raxmlng_ancestral/Q9Y6H8.raxml.reduced.phy Alignment comprises 1 partitions and 435 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 435 Gaps: 28.25 % Invariant sites: 3.22 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9Y6H8/4_raxmlng_ancestral/Q9Y6H8.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9Y6H8/3_mltree/Q9Y6H8.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 109 / 8720 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -138075.196617 [00:00:00 -138075.196617] Initial branch length optimization [00:00:02 -120811.266273] Model parameter optimization (eps = 0.100000) [00:00:39] Tree #1, final logLikelihood: -120609.939839 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.177196,0.142968) (0.165681,0.232352) (0.210365,0.688270) (0.446758,1.771390) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9Y6H8/4_raxmlng_ancestral/Q9Y6H8.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9Y6H8/4_raxmlng_ancestral/Q9Y6H8.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9Y6H8/4_raxmlng_ancestral/Q9Y6H8.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9Y6H8/4_raxmlng_ancestral/Q9Y6H8.raxml.log Analysis started: 03-Jun-2021 02:37:42 / finished: 03-Jun-2021 02:38:25 Elapsed time: 43.987 seconds Consumed energy: 3.212 Wh