RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 17-Jul-2021 07:58:39 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y661/2_msa/Q9Y661_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y661/3_mltree/Q9Y661.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y661/4_raxmlng_ancestral/Q9Y661 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626497919 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y661/2_msa/Q9Y661_nogap_msa.fasta [00:00:00] Loaded alignment with 993 taxa and 456 sites WARNING: Sequences tr_E1C4I5_E1C4I5_CHICK_9031 and tr_A0A226NHJ6_A0A226NHJ6_CALSU_9009 are exactly identical! WARNING: Sequences sp_Q673U1_HS3S2_MOUSE_10090 and sp_Q80W66_HS3S2_RAT_10116 are exactly identical! WARNING: Sequences sp_Q8BSL4_HS3S5_MOUSE_10090 and tr_W5PI73_W5PI73_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q8BSL4_HS3S5_MOUSE_10090 and tr_Q0VD21_Q0VD21_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q8BSL4_HS3S5_MOUSE_10090 and tr_A0A2U4AV05_A0A2U4AV05_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q8BSL4_HS3S5_MOUSE_10090 and tr_A0A2Y9F5X5_A0A2Y9F5X5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YFU5_M3YFU5_MUSPF_9669 and tr_D2HKE9_D2HKE9_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YFU5_M3YFU5_MUSPF_9669 and tr_A0A2U3VRZ2_A0A2U3VRZ2_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YFU5_M3YFU5_MUSPF_9669 and tr_A0A384DC86_A0A384DC86_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1RRJ5_G1RRJ5_NOMLE_61853 and tr_G3QFL4_G3QFL4_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RRJ5_G1RRJ5_NOMLE_61853 and tr_A0A2J8U159_A0A2J8U159_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RRJ5_G1RRJ5_NOMLE_61853 and sp_Q8IZT8_HS3S5_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RRJ5_G1RRJ5_NOMLE_61853 and tr_F7IAJ7_F7IAJ7_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1RRJ5_G1RRJ5_NOMLE_61853 and tr_G7P3M0_G7P3M0_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RRJ5_G1RRJ5_NOMLE_61853 and tr_A0A096MX52_A0A096MX52_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RRJ5_G1RRJ5_NOMLE_61853 and tr_A0A0D9RT36_A0A0D9RT36_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RRJ5_G1RRJ5_NOMLE_61853 and tr_A0A2K5L8U9_A0A2K5L8U9_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RRJ5_G1RRJ5_NOMLE_61853 and tr_A0A2K6BWI1_A0A2K6BWI1_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RRJ5_G1RRJ5_NOMLE_61853 and tr_A0A2K5XKT5_A0A2K5XKT5_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RRJ5_G1RRJ5_NOMLE_61853 and tr_A0A2R8ZRJ5_A0A2R8ZRJ5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RFC1_G3RFC1_GORGO_9595 and tr_H2NQE0_H2NQE0_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3RFC1_G3RFC1_GORGO_9595 and tr_H2QAR3_H2QAR3_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RFC1_G3RFC1_GORGO_9595 and sp_Q9Y278_HS3S2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RFC1_G3RFC1_GORGO_9595 and tr_A0A2R9B8Q8_A0A2R9B8Q8_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2PCX6_H2PCX6_PONAB_9601 and tr_H2QP83_H2QP83_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2PCX6_H2PCX6_PONAB_9601 and sp_O14792_HS3S1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PCX6_H2PCX6_PONAB_9601 and tr_A0A2R8ZDV3_A0A2R8ZDV3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1NL03_G1NL03_MELGA_9103 and tr_H0ZNZ3_H0ZNZ3_TAEGU_59729 are exactly identical! WARNING: Sequences tr_G1NL03_G1NL03_MELGA_9103 and tr_U3K8V3_U3K8V3_FICAL_59894 are exactly identical! WARNING: Sequences tr_G1NL03_G1NL03_MELGA_9103 and tr_A0A091VMF4_A0A091VMF4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G1NL03_G1NL03_MELGA_9103 and tr_A0A087RKY3_A0A087RKY3_APTFO_9233 are exactly identical! WARNING: Sequences tr_G1NL03_G1NL03_MELGA_9103 and tr_A0A2I0MUD6_A0A2I0MUD6_COLLI_8932 are exactly identical! WARNING: Sequences tr_G1NL03_G1NL03_MELGA_9103 and tr_A0A1V4JLU6_A0A1V4JLU6_PATFA_372326 are exactly identical! WARNING: Sequences tr_G1NL03_G1NL03_MELGA_9103 and tr_A0A218UX55_A0A218UX55_9PASE_299123 are exactly identical! WARNING: Sequences tr_E2QTV5_E2QTV5_CANLF_9615 and tr_M3WSU2_M3WSU2_FELCA_9685 are exactly identical! WARNING: Sequences tr_F6PP00_F6PP00_HORSE_9796 and tr_A0A286XPL5_A0A286XPL5_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A158NCP8_A0A158NCP8_ATTCE_12957 and tr_A0A195BWN3_A0A195BWN3_9HYME_520822 are exactly identical! WARNING: Sequences tr_F7DQN3_F7DQN3_MACMU_9544 and tr_G7P5A0_G7P5A0_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7DQN3_F7DQN3_MACMU_9544 and tr_A0A096MMR1_A0A096MMR1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7DQN3_F7DQN3_MACMU_9544 and tr_A0A2K5L1C5_A0A2K5L1C5_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7DQN3_F7DQN3_MACMU_9544 and tr_A0A2K6B061_A0A2K6B061_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7DQN3_F7DQN3_MACMU_9544 and tr_A0A2K5XUR4_A0A2K5XUR4_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7H338_F7H338_MACMU_9544 and tr_A0A2K5XQD2_A0A2K5XQD2_MANLE_9568 are exactly identical! WARNING: Sequences tr_H0ZFK1_H0ZFK1_TAEGU_59729 and tr_A0A091EAX4_A0A091EAX4_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZFK1_H0ZFK1_TAEGU_59729 and tr_A0A093PIZ9_A0A093PIZ9_9PASS_328815 are exactly identical! WARNING: Sequences tr_R0KSD1_R0KSD1_ANAPL_8839 and tr_A0A091J234_A0A091J234_EGRGA_188379 are exactly identical! WARNING: Sequences tr_R0KSD1_R0KSD1_ANAPL_8839 and tr_A0A093S712_A0A093S712_9PASS_328815 are exactly identical! WARNING: Sequences tr_R0KSD1_R0KSD1_ANAPL_8839 and tr_A0A087QGU4_A0A087QGU4_APTFO_9233 are exactly identical! WARNING: Sequences tr_R0KSD1_R0KSD1_ANAPL_8839 and tr_A0A093GUM2_A0A093GUM2_STRCA_441894 are exactly identical! WARNING: Sequences tr_R0KSD1_R0KSD1_ANAPL_8839 and tr_A0A091XR62_A0A091XR62_OPIHO_30419 are exactly identical! WARNING: Sequences tr_R0KSD1_R0KSD1_ANAPL_8839 and tr_A0A091GE52_A0A091GE52_9AVES_55661 are exactly identical! WARNING: Sequences tr_R0KSD1_R0KSD1_ANAPL_8839 and tr_A0A0A0A3J7_A0A0A0A3J7_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A096MY37_A0A096MY37_PAPAN_9555 and tr_A0A2K5L8W4_A0A2K5L8W4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NHD6_A0A096NHD6_PAPAN_9555 and tr_A0A2K5N5Q6_A0A2K5N5Q6_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NHD6_A0A096NHD6_PAPAN_9555 and tr_A0A2K6CDE8_A0A2K6CDE8_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0N4TSI8_A0A0N4TSI8_BRUPA_6280 and tr_A0A0R3QZ00_A0A0R3QZ00_9BILA_42155 are exactly identical! WARNING: Sequences tr_A0A091ELT9_A0A091ELT9_CORBR_85066 and tr_A0A093Q7H3_A0A093Q7H3_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091EQL8_A0A091EQL8_CORBR_85066 and tr_A0A087RGA6_A0A087RGA6_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091EQL8_A0A091EQL8_CORBR_85066 and tr_A0A099ZYZ9_A0A099ZYZ9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091ISK6_A0A091ISK6_EGRGA_188379 and tr_A0A091WEC1_A0A091WEC1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091ISK6_A0A091ISK6_EGRGA_188379 and tr_A0A099ZUT6_A0A099ZUT6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091ISK6_A0A091ISK6_EGRGA_188379 and tr_A0A091HKF3_A0A091HKF3_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A093QKK4_A0A093QKK4_9PASS_328815 and tr_A0A091XU95_A0A091XU95_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091UKI3_A0A091UKI3_NIPNI_128390 and tr_A0A0A0ANY3_A0A0A0ANY3_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A0V0ZNY9_A0A0V0ZNY9_9BILA_990121 and tr_A0A0V0UDE4_A0A0V0UDE4_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A1S3S803_A0A1S3S803_SALSA_8030 and tr_A0A060WQW0_A0A060WQW0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MI74_A0A226MI74_CALSU_9009 and tr_A0A226PAL8_A0A226PAL8_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MSX8_A0A226MSX8_CALSU_9009 and tr_A0A226PMF2_A0A226PMF2_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2K5P3K2_A0A2K5P3K2_CERAT_9531 and tr_A0A2K6E6N3_A0A2K6E6N3_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2U3V7N4_A0A2U3V7N4_TURTR_9739 and tr_A0A2Y9MP20_A0A2Y9MP20_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4A8M0_A0A2U4A8M0_TURTR_9739 and tr_A0A2Y9PB65_A0A2Y9PB65_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4A8M6_A0A2U4A8M6_TURTR_9739 and tr_A0A2Y9PEE9_A0A2Y9PEE9_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 72 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y661/4_raxmlng_ancestral/Q9Y661.raxml.reduced.phy Alignment comprises 1 partitions and 456 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 456 Gaps: 37.03 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y661/4_raxmlng_ancestral/Q9Y661.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y661/3_mltree/Q9Y661.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 114 / 9120 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -160656.252909 [00:00:00 -160656.252909] Initial branch length optimization [00:00:01 -133607.791918] Model parameter optimization (eps = 0.100000) [00:01:04] Tree #1, final logLikelihood: -132618.436326 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.159208,0.174339) (0.194025,0.171503) (0.300813,0.549567) (0.345955,2.236279) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y661/4_raxmlng_ancestral/Q9Y661.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y661/4_raxmlng_ancestral/Q9Y661.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y661/4_raxmlng_ancestral/Q9Y661.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y661/4_raxmlng_ancestral/Q9Y661.raxml.log Analysis started: 17-Jul-2021 07:58:39 / finished: 17-Jul-2021 07:59:47 Elapsed time: 68.532 seconds