RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 24-Jun-2021 13:10:17 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q9Y5Z9/2_msa/Q9Y5Z9_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q9Y5Z9/3_mltree/Q9Y5Z9 --seed 2 --threads 6 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (6 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q9Y5Z9/2_msa/Q9Y5Z9_trimmed_msa.fasta
[00:00:00] Loaded alignment with 187 taxa and 294 sites

WARNING: Sequences tr_B4Q6Z5_B4Q6Z5_DROSI_7240 and tr_B4I211_B4I211_DROSE_7238 are exactly identical!
WARNING: Sequences tr_G3QG04_G3QG04_GORGO_9595 and tr_H2R9I2_H2R9I2_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3QG04_G3QG04_GORGO_9595 and sp_Q9Y5Z9_UBIA1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3QG04_G3QG04_GORGO_9595 and tr_A0A2R9CKG4_A0A2R9CKG4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_Q29NM0_Q29NM0_DROPS_46245 and tr_B4GQM6_B4GQM6_DROPE_7234 are exactly identical!
WARNING: Sequences tr_A0A088A1Z2_A0A088A1Z2_APIME_7460 and tr_A0A2A3ELP7_A0A2A3ELP7_APICC_94128 are exactly identical!
WARNING: Sequences tr_F7GJ37_F7GJ37_MACMU_9544 and tr_G7NU63_G7NU63_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7GJ37_F7GJ37_MACMU_9544 and tr_A0A096NWY0_A0A096NWY0_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F7GJ37_F7GJ37_MACMU_9544 and tr_A0A0D9S8M5_A0A0D9S8M5_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F7GJ37_F7GJ37_MACMU_9544 and tr_A0A2K5L8G4_A0A2K5L8G4_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F7GJ37_F7GJ37_MACMU_9544 and tr_A0A2K6CPC3_A0A2K6CPC3_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7GJ37_F7GJ37_MACMU_9544 and tr_A0A2K5XHH7_A0A2K5XHH7_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A091UV74_A0A091UV74_NIPNI_128390 and tr_A0A087QL40_A0A087QL40_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A2U4AZR8_A0A2U4AZR8_TURTR_9739 and tr_A0A2Y9FVE3_A0A2Y9FVE3_PHYCD_9755 are exactly identical!
WARNING: Duplicate sequences found: 14

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q9Y5Z9/3_mltree/Q9Y5Z9.raxml.reduced.phy

Alignment comprises 1 partitions and 294 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 294 / 294
Gaps: 3.54 %
Invariant sites: 1.02 %


NOTE: Binary MSA file already exists: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q9Y5Z9/3_mltree/Q9Y5Z9.raxml.rba

Parallelization scheme autoconfig: 6 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 187 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 294 / 23520
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -66475.757520] Initial branch length optimization
[00:00:00 -49372.129959] Model parameter optimization (eps = 10.000000)
[00:00:15 -49295.238253] AUTODETECT spr round 1 (radius: 5)
[00:00:26 -38224.122965] AUTODETECT spr round 2 (radius: 10)
[00:00:42 -32712.525547] AUTODETECT spr round 3 (radius: 15)
[00:01:01 -29257.652471] AUTODETECT spr round 4 (radius: 20)
[00:01:22 -28400.676203] AUTODETECT spr round 5 (radius: 25)
[00:01:42 -28400.648233] SPR radius for FAST iterations: 20 (autodetect)
[00:01:42 -28400.648233] Model parameter optimization (eps = 3.000000)
[00:01:55 -28233.512221] FAST spr round 1 (radius: 20)
[00:02:11 -26246.566821] FAST spr round 2 (radius: 20)
[00:02:22 -26181.157691] FAST spr round 3 (radius: 20)
[00:02:31 -26180.505806] FAST spr round 4 (radius: 20)
[00:02:40 -26180.505798] Model parameter optimization (eps = 1.000000)
[00:02:48 -26160.590361] SLOW spr round 1 (radius: 5)
[00:03:10 -26156.096794] SLOW spr round 2 (radius: 5)
[00:03:31 -26146.693000] SLOW spr round 3 (radius: 5)
[00:03:51 -26146.039179] SLOW spr round 4 (radius: 5)
[00:04:10 -26146.039071] SLOW spr round 5 (radius: 10)
[00:04:28 -26141.875123] SLOW spr round 6 (radius: 5)
[00:04:57 -26141.875099] SLOW spr round 7 (radius: 10)
[00:05:20 -26141.875098] SLOW spr round 8 (radius: 15)
[00:05:29] [worker #3] ML tree search #4, logLikelihood: -26147.673875
[00:05:49 -26141.799795] SLOW spr round 9 (radius: 20)
[00:05:51] [worker #4] ML tree search #5, logLikelihood: -26151.083261
[00:05:59] [worker #5] ML tree search #6, logLikelihood: -26143.410317
[00:06:17 -26141.799604] SLOW spr round 10 (radius: 25)
[00:06:45] [worker #2] ML tree search #3, logLikelihood: -26143.687132
[00:06:48 -26141.799585] Model parameter optimization (eps = 0.100000)

[00:06:52] [worker #0] ML tree search #1, logLikelihood: -26141.675278

[00:06:52 -66661.414570] Initial branch length optimization
[00:06:53 -49758.838571] Model parameter optimization (eps = 10.000000)
[00:07:04 -49686.364751] AUTODETECT spr round 1 (radius: 5)
[00:07:15 -38106.773206] AUTODETECT spr round 2 (radius: 10)
[00:07:32 -31554.510060] AUTODETECT spr round 3 (radius: 15)
[00:07:51 -28846.625525] AUTODETECT spr round 4 (radius: 20)
[00:08:12 -28706.363838] AUTODETECT spr round 5 (radius: 25)
[00:08:28 -28706.347421] SPR radius for FAST iterations: 20 (autodetect)
[00:08:28 -28706.347421] Model parameter optimization (eps = 3.000000)
[00:08:43] [worker #1] ML tree search #2, logLikelihood: -26143.472143
[00:08:47 -28510.869230] FAST spr round 1 (radius: 20)
[00:09:05 -26339.464326] FAST spr round 2 (radius: 20)
[00:09:20 -26186.067659] FAST spr round 3 (radius: 20)
[00:09:32 -26164.323019] FAST spr round 4 (radius: 20)
[00:09:42 -26161.903079] FAST spr round 5 (radius: 20)
[00:09:51 -26161.877730] Model parameter optimization (eps = 1.000000)
[00:09:56 -26155.638607] SLOW spr round 1 (radius: 5)
[00:10:19 -26150.825591] SLOW spr round 2 (radius: 5)
[00:10:40 -26146.644060] SLOW spr round 3 (radius: 5)
[00:10:59 -26146.642134] SLOW spr round 4 (radius: 10)
[00:11:19 -26146.641756] SLOW spr round 5 (radius: 15)
[00:11:50 -26146.641678] SLOW spr round 6 (radius: 20)
[00:12:14] [worker #3] ML tree search #10, logLikelihood: -26141.247975
[00:12:16 -26146.567357] SLOW spr round 7 (radius: 25)
[00:12:23] [worker #2] ML tree search #9, logLikelihood: -26147.741659
[00:12:49 -26146.567266] Model parameter optimization (eps = 0.100000)

[00:12:52] [worker #0] ML tree search #7, logLikelihood: -26146.468510

[00:12:52 -67008.791930] Initial branch length optimization
[00:12:52 -49790.998202] Model parameter optimization (eps = 10.000000)
[00:12:54] [worker #4] ML tree search #11, logLikelihood: -26145.021921
[00:13:00 -49726.752171] AUTODETECT spr round 1 (radius: 5)
[00:13:11 -38645.252827] AUTODETECT spr round 2 (radius: 10)
[00:13:27 -31901.421845] AUTODETECT spr round 3 (radius: 15)
[00:13:47 -28831.751054] AUTODETECT spr round 4 (radius: 20)
[00:13:52] [worker #5] ML tree search #12, logLikelihood: -26146.178797
[00:14:11 -28214.338320] AUTODETECT spr round 5 (radius: 25)
[00:14:24] [worker #1] ML tree search #8, logLikelihood: -26144.677925
[00:14:33 -28207.044900] SPR radius for FAST iterations: 25 (autodetect)
[00:14:33 -28207.044900] Model parameter optimization (eps = 3.000000)
[00:14:49 -28005.374969] FAST spr round 1 (radius: 25)
[00:15:07 -26552.667024] FAST spr round 2 (radius: 25)
[00:15:21 -26201.424029] FAST spr round 3 (radius: 25)
[00:15:33 -26168.010805] FAST spr round 4 (radius: 25)
[00:15:42 -26166.862082] FAST spr round 5 (radius: 25)
[00:15:52 -26166.860561] Model parameter optimization (eps = 1.000000)
[00:15:59 -26159.097336] SLOW spr round 1 (radius: 5)
[00:16:21 -26148.245248] SLOW spr round 2 (radius: 5)
[00:16:42 -26146.524804] SLOW spr round 3 (radius: 5)
[00:17:02 -26146.524589] SLOW spr round 4 (radius: 10)
[00:17:20 -26146.524588] SLOW spr round 5 (radius: 15)
[00:17:49 -26146.524588] SLOW spr round 6 (radius: 20)
[00:17:53] [worker #3] ML tree search #16, logLikelihood: -26156.058665
[00:18:16 -26146.524588] SLOW spr round 7 (radius: 25)
[00:18:45 -26146.524588] Model parameter optimization (eps = 0.100000)

[00:18:49] [worker #0] ML tree search #13, logLikelihood: -26146.399380

[00:18:49 -67068.502530] Initial branch length optimization
[00:18:50 -49688.725745] Model parameter optimization (eps = 10.000000)
[00:19:05 -49625.311069] AUTODETECT spr round 1 (radius: 5)
[00:19:16 -37579.714542] AUTODETECT spr round 2 (radius: 10)
[00:19:32 -30888.741599] AUTODETECT spr round 3 (radius: 15)
[00:19:39] [worker #4] ML tree search #17, logLikelihood: -26146.536919
[00:19:42] [worker #2] ML tree search #15, logLikelihood: -26145.188477
[00:19:48] [worker #5] ML tree search #18, logLikelihood: -26145.478248
[00:19:51 -28666.737791] AUTODETECT spr round 4 (radius: 20)
[00:20:15 -28620.273026] AUTODETECT spr round 5 (radius: 25)
[00:20:36 -28607.281474] SPR radius for FAST iterations: 25 (autodetect)
[00:20:36 -28607.281474] Model parameter optimization (eps = 3.000000)
[00:20:50 -28419.873055] FAST spr round 1 (radius: 25)
[00:21:08 -26303.182787] FAST spr round 2 (radius: 25)
[00:21:21 -26175.505593] FAST spr round 3 (radius: 25)
[00:21:33 -26168.079832] FAST spr round 4 (radius: 25)
[00:21:42 -26168.079786] Model parameter optimization (eps = 1.000000)
[00:21:46] [worker #1] ML tree search #14, logLikelihood: -26143.110502
[00:21:49 -26159.165264] SLOW spr round 1 (radius: 5)
[00:22:10 -26152.836916] SLOW spr round 2 (radius: 5)
[00:22:29 -26152.836697] SLOW spr round 3 (radius: 10)
[00:22:48 -26152.836675] SLOW spr round 4 (radius: 15)
[00:23:20 -26152.836670] SLOW spr round 5 (radius: 20)
[00:23:55 -26152.836670] SLOW spr round 6 (radius: 25)
[00:24:26 -26152.836669] Model parameter optimization (eps = 0.100000)

[00:24:29] [worker #0] ML tree search #19, logLikelihood: -26152.763777

[00:30:39] [worker #1] ML tree search #20, logLikelihood: -26152.785398

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.345713,0.578592) (0.321078,1.003488) (0.263852,1.102837) (0.069357,2.693168) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -26141.247975

AIC score: 53036.495950 / AICc score: 338048.495950 / BIC score: 54425.205523
Free parameters (model + branch lengths): 377

WARNING: Number of free parameters (K=377) is larger than alignment size (n=294).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q9Y5Z9/3_mltree/Q9Y5Z9.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q9Y5Z9/3_mltree/Q9Y5Z9.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q9Y5Z9/3_mltree/Q9Y5Z9.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q9Y5Z9/3_mltree/Q9Y5Z9.raxml.log

Analysis started: 24-Jun-2021 13:10:17 / finished: 24-Jun-2021 13:40:57

Elapsed time: 1840.007 seconds