RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 17-Jul-2021 08:02:22 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5X0/2_msa/Q9Y5X0_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5X0/3_mltree/Q9Y5X0.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5X0/4_raxmlng_ancestral/Q9Y5X0 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626498142 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5X0/2_msa/Q9Y5X0_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 201 sites WARNING: Sequences tr_B4QS88_B4QS88_DROSI_7240 and tr_Q9VG51_Q9VG51_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QS88_B4QS88_DROSI_7240 and tr_B4HGV6_B4HGV6_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QS88_B4QS88_DROSI_7240 and tr_Q29BS2_Q29BS2_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4QS88_B4QS88_DROSI_7240 and tr_B3M1X6_B3M1X6_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4QS88_B4QS88_DROSI_7240 and tr_B4GN06_B4GN06_DROPE_7234 are exactly identical! WARNING: Sequences tr_E1ZWA0_E1ZWA0_CAMFO_104421 and tr_A0A158NUW6_A0A158NUW6_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E1ZWA0_E1ZWA0_CAMFO_104421 and tr_A0A151WT21_A0A151WT21_9HYME_64791 are exactly identical! WARNING: Sequences tr_E1ZWA0_E1ZWA0_CAMFO_104421 and tr_A0A151IRM0_A0A151IRM0_9HYME_471704 are exactly identical! WARNING: Sequences tr_E1ZWA0_E1ZWA0_CAMFO_104421 and tr_A0A195BWJ8_A0A195BWJ8_9HYME_520822 are exactly identical! WARNING: Sequences tr_E1ZWA0_E1ZWA0_CAMFO_104421 and tr_A0A195FQJ7_A0A195FQJ7_9HYME_34720 are exactly identical! WARNING: Sequences tr_Q5ZIA3_Q5ZIA3_CHICK_9031 and tr_U3KB85_U3KB85_FICAL_59894 are exactly identical! WARNING: Sequences tr_Q5ZIA3_Q5ZIA3_CHICK_9031 and tr_A0A1V4JM97_A0A1V4JM97_PATFA_372326 are exactly identical! WARNING: Sequences tr_Q5ZIA3_Q5ZIA3_CHICK_9031 and tr_A0A218UZ83_A0A218UZ83_9PASE_299123 are exactly identical! WARNING: Sequences tr_Q5ZIA3_Q5ZIA3_CHICK_9031 and tr_A0A226NJW7_A0A226NJW7_CALSU_9009 are exactly identical! WARNING: Sequences tr_C8VAL9_C8VAL9_EMENI_227321 and tr_B8NUQ4_B8NUQ4_ASPFN_332952 are exactly identical! WARNING: Sequences tr_C8VAL9_C8VAL9_EMENI_227321 and sp_Q4WWS3_SNX3_ASPFU_330879 are exactly identical! WARNING: Sequences tr_C8VAL9_C8VAL9_EMENI_227321 and sp_Q2U4K2_SNX3_ASPOR_510516 are exactly identical! WARNING: Sequences tr_C8VAL9_C8VAL9_EMENI_227321 and tr_A1D822_A1D822_NEOFI_331117 are exactly identical! WARNING: Sequences tr_C8VAL9_C8VAL9_EMENI_227321 and tr_Q0CC53_Q0CC53_ASPTN_341663 are exactly identical! WARNING: Sequences tr_C8VAL9_C8VAL9_EMENI_227321 and tr_A0A0L1IM53_A0A0L1IM53_ASPNO_1509407 are exactly identical! WARNING: Sequences tr_C8VAL9_C8VAL9_EMENI_227321 and tr_A0A0U5G7Z0_A0A0U5G7Z0_9EURO_454130 are exactly identical! WARNING: Sequences tr_C8VAL9_C8VAL9_EMENI_227321 and tr_A0A1L9PGE4_A0A1L9PGE4_ASPVE_1036611 are exactly identical! WARNING: Sequences tr_C8VAL9_C8VAL9_EMENI_227321 and tr_A0A229X960_A0A229X960_9EURO_1245748 are exactly identical! WARNING: Sequences tr_C8VAL9_C8VAL9_EMENI_227321 and tr_A0A2I1C276_A0A2I1C276_9EURO_1392255 are exactly identical! WARNING: Sequences tr_C8VAL9_C8VAL9_EMENI_227321 and tr_A0A2I2FF19_A0A2I2FF19_9EURO_41067 are exactly identical! WARNING: Sequences tr_C8VAL9_C8VAL9_EMENI_227321 and tr_A0A2J5HEU4_A0A2J5HEU4_9EURO_482145 are exactly identical! WARNING: Sequences tr_C8VAL9_C8VAL9_EMENI_227321 and tr_A0A395GM06_A0A395GM06_9EURO_1448316 are exactly identical! WARNING: Sequences tr_W5JSZ8_W5JSZ8_ANODA_43151 and tr_A0A084WSR3_A0A084WSR3_ANOSI_74873 are exactly identical! WARNING: Sequences tr_G9KQG7_G9KQG7_MUSPF_9669 and tr_A0A2Y9JMK2_A0A2Y9JMK2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and sp_Q5R5V1_SNX3_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_B7NZG7_B7NZG7_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_F6UT62_F6UT62_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_H2QTI3_H2QTI3_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_F6VUD7_F6VUD7_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_W5PMB1_W5PMB1_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and sp_Q5U211_SNX3_RAT_10116 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_I3M9D9_I3M9D9_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and sp_O60493_SNX3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_F6W8H1_F6W8H1_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_B0KWH6_B0KWH6_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_F1RT25_F1RT25_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_D2H6J3_D2H6J3_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and sp_Q1RMH8_SNX3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_L5JNU7_L5JNU7_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_A0A337SAT1_A0A337SAT1_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_B0CM46_B0CM46_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_A0A0D9RRL9_A0A0D9RRL9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_A0A1U7UB23_A0A1U7UB23_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_A0A1U7QG80_A0A1U7QG80_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_A0A2K5L9Y4_A0A2K5L9Y4_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_A0A2K6B5I6_A0A2K6B5I6_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_A0A2R9AMC1_A0A2R9AMC1_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_A0A2U3V3R6_A0A2U3V3R6_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_A0A2U3VRT7_A0A2U3VRT7_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_A0A2Y9KQ81_A0A2Y9KQ81_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_A0A2Y9LJB6_A0A2Y9LJB6_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_A0A2Y9FBM8_A0A2Y9FBM8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YEI1_M3YEI1_MUSPF_9669 and tr_A0A384ATK3_A0A384ATK3_BALAS_310752 are exactly identical! WARNING: Sequences tr_B6HF46_B6HF46_PENRW_500485 and tr_S8AY48_S8AY48_PENO1_933388 are exactly identical! WARNING: Sequences tr_B6HF46_B6HF46_PENRW_500485 and tr_A0A0F7TKN6_A0A0F7TKN6_9EURO_104259 are exactly identical! WARNING: Sequences tr_B6HF46_B6HF46_PENRW_500485 and tr_A0A135LAY9_A0A135LAY9_PENPA_5078 are exactly identical! WARNING: Sequences tr_B6HF46_B6HF46_PENRW_500485 and tr_A0A1F5LMG5_A0A1F5LMG5_9EURO_1835702 are exactly identical! WARNING: Sequences tr_B6HF46_B6HF46_PENRW_500485 and tr_A0A1Q5TAV0_A0A1Q5TAV0_9EURO_1316194 are exactly identical! WARNING: Sequences tr_B6HF46_B6HF46_PENRW_500485 and tr_A0A1V6YTT8_A0A1V6YTT8_PENNA_60175 are exactly identical! WARNING: Sequences tr_Q2H3Y5_Q2H3Y5_CHAGB_306901 and sp_Q7SH92_SNX3_NEUCR_367110 are exactly identical! WARNING: Sequences tr_Q2H3Y5_Q2H3Y5_CHAGB_306901 and tr_F7VSQ9_F7VSQ9_SORMK_771870 are exactly identical! WARNING: Sequences tr_Q2H3Y5_Q2H3Y5_CHAGB_306901 and tr_G4U5Y6_G4U5Y6_NEUT9_510952 are exactly identical! WARNING: Sequences tr_Q2H3Y5_Q2H3Y5_CHAGB_306901 and tr_A0A0G2HVB9_A0A0G2HVB9_9PEZI_1214573 are exactly identical! WARNING: Sequences tr_Q2H3Y5_Q2H3Y5_CHAGB_306901 and tr_A0A194W8A5_A0A194W8A5_9PEZI_105487 are exactly identical! WARNING: Sequences tr_Q2H3Y5_Q2H3Y5_CHAGB_306901 and tr_A0A194UZH0_A0A194UZH0_9PEZI_694573 are exactly identical! WARNING: Sequences tr_E3RK63_E3RK63_PYRTT_861557 and tr_B2WBY4_B2WBY4_PYRTR_426418 are exactly identical! WARNING: Sequences tr_E3RK63_E3RK63_PYRTT_861557 and tr_M2T815_M2T815_COCSN_665912 are exactly identical! WARNING: Sequences tr_E3RK63_E3RK63_PYRTT_861557 and tr_R0JXL6_R0JXL6_SETT2_671987 are exactly identical! WARNING: Sequences tr_E3RK63_E3RK63_PYRTT_861557 and tr_M2SXE6_M2SXE6_COCH5_701091 are exactly identical! WARNING: Sequences tr_E3RK63_E3RK63_PYRTT_861557 and tr_W6Y5V4_W6Y5V4_COCCA_930089 are exactly identical! WARNING: Sequences tr_E3RK63_E3RK63_PYRTT_861557 and tr_W6ZD28_W6ZD28_COCMI_930090 are exactly identical! WARNING: Sequences tr_E3RK63_E3RK63_PYRTT_861557 and tr_A0A177E122_A0A177E122_ALTAL_5599 are exactly identical! WARNING: Sequences tr_E3RK63_E3RK63_PYRTT_861557 and tr_A0A2W1FMC6_A0A2W1FMC6_9PLEO_45151 are exactly identical! WARNING: Sequences tr_A0A2I3GBF7_A0A2I3GBF7_NOMLE_61853 and tr_G5B6T1_G5B6T1_HETGA_10181 are exactly identical! WARNING: Sequences tr_A0A2I3GBF7_A0A2I3GBF7_NOMLE_61853 and tr_G3TK72_G3TK72_LOXAF_9785 are exactly identical! WARNING: Sequences tr_A0A2I3GBF7_A0A2I3GBF7_NOMLE_61853 and tr_A0A2Y9DDB5_A0A2Y9DDB5_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A2I3GJ79_A0A2I3GJ79_NOMLE_61853 and tr_G3RQN6_G3RQN6_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GJ79_A0A2I3GJ79_NOMLE_61853 and tr_A0A2I3RKJ7_A0A2I3RKJ7_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3I7K5_G3I7K5_CRIGR_10029 and tr_A0A2J8UBG5_A0A2J8UBG5_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3I7K5_G3I7K5_CRIGR_10029 and tr_H0WZL7_H0WZL7_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G3I7K5_G3I7K5_CRIGR_10029 and tr_G5BW34_G5BW34_HETGA_10181 are exactly identical! WARNING: Sequences tr_G3I7K5_G3I7K5_CRIGR_10029 and tr_G3TI09_G3TI09_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G3I7K5_G3I7K5_CRIGR_10029 and tr_F2Z596_F2Z596_PIG_9823 are exactly identical! WARNING: Sequences tr_G3I7K5_G3I7K5_CRIGR_10029 and tr_A6QR61_A6QR61_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G3I7K5_G3I7K5_CRIGR_10029 and tr_A0A1S3AJN4_A0A1S3AJN4_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G3I7K5_G3I7K5_CRIGR_10029 and tr_A0A1S3GE52_A0A1S3GE52_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G3I7K5_G3I7K5_CRIGR_10029 and tr_A0A2U4CGS9_A0A2U4CGS9_TURTR_9739 are exactly identical! WARNING: Sequences tr_G3I7K5_G3I7K5_CRIGR_10029 and tr_A0A2U3VNT8_A0A2U3VNT8_ODORO_9708 are exactly identical! WARNING: Sequences tr_G3I7K5_G3I7K5_CRIGR_10029 and tr_A0A2Y9L1F9_A0A2Y9L1F9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G3I7K5_G3I7K5_CRIGR_10029 and tr_A0A2Y9M6P9_A0A2Y9M6P9_DELLE_9749 are exactly identical! WARNING: Sequences tr_G3I7K5_G3I7K5_CRIGR_10029 and tr_A0A2Y9F3V1_A0A2Y9F3V1_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G3I7K5_G3I7K5_CRIGR_10029 and tr_A0A384A8I3_A0A384A8I3_BALAS_310752 are exactly identical! WARNING: Sequences tr_J3KGW9_J3KGW9_COCIM_246410 and tr_C0NLQ1_C0NLQ1_AJECG_447093 are exactly identical! WARNING: Sequences tr_J3KGW9_J3KGW9_COCIM_246410 and tr_A0A179UAI3_A0A179UAI3_BLAGS_559298 are exactly identical! WARNING: Sequences tr_J3KGW9_J3KGW9_COCIM_246410 and tr_C5GN81_C5GN81_AJEDR_559297 are exactly identical! WARNING: Sequences tr_J3KGW9_J3KGW9_COCIM_246410 and tr_C1GZ76_C1GZ76_PARBA_502779 are exactly identical! WARNING: Sequences tr_J3KGW9_J3KGW9_COCIM_246410 and tr_E9D4L9_E9D4L9_COCPS_443226 are exactly identical! WARNING: Sequences tr_J3KGW9_J3KGW9_COCIM_246410 and tr_F0U837_F0U837_AJEC8_544711 are exactly identical! WARNING: Sequences tr_J3KGW9_J3KGW9_COCIM_246410 and tr_A6RC82_A6RC82_AJECN_339724 are exactly identical! WARNING: Sequences tr_J3KGW9_J3KGW9_COCIM_246410 and tr_A0A0J6XXT2_A0A0J6XXT2_COCIT_404692 are exactly identical! WARNING: Sequences tr_J3KGW9_J3KGW9_COCIM_246410 and tr_A0A1B7NV70_A0A1B7NV70_9EURO_1658172 are exactly identical! WARNING: Sequences tr_J3KGW9_J3KGW9_COCIM_246410 and tr_A0A1J9QNT4_A0A1J9QNT4_9EURO_1447872 are exactly identical! WARNING: Sequences tr_J3KGW9_J3KGW9_COCIM_246410 and tr_A0A2B7XT36_A0A2B7XT36_9EURO_1447875 are exactly identical! WARNING: Sequences tr_J3KGW9_J3KGW9_COCIM_246410 and tr_A0A2B7ZAU6_A0A2B7ZAU6_9EURO_73230 are exactly identical! WARNING: Sequences tr_B6QSX2_B6QSX2_TALMQ_441960 and tr_A0A093VAM7_A0A093VAM7_TALMA_1077442 are exactly identical! WARNING: Sequences tr_B6QSX2_B6QSX2_TALMQ_441960 and tr_A0A2H3IGP5_A0A2H3IGP5_9EURO_290292 are exactly identical! WARNING: Sequences tr_B6QSX2_B6QSX2_TALMQ_441960 and tr_A0A364LAM2_A0A364LAM2_9EURO_1196081 are exactly identical! WARNING: Sequences tr_A0A2I2ZZ01_A0A2I2ZZ01_GORGO_9595 and tr_A0A2I3S5V9_A0A2I3S5V9_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZZ01_A0A2I2ZZ01_GORGO_9595 and tr_A0A2R9CEF6_A0A2R9CEF6_PANPA_9597 are exactly identical! WARNING: Sequences tr_C1G812_C1G812_PARBD_502780 and tr_A0A1J9RFV9_A0A1J9RFV9_9EURO_1658174 are exactly identical! WARNING: Sequences tr_G1MTJ7_G1MTJ7_MELGA_9103 and tr_R0LSU6_R0LSU6_ANAPL_8839 are exactly identical! WARNING: Sequences tr_G1MTJ7_G1MTJ7_MELGA_9103 and tr_A0A091EWU9_A0A091EWU9_CORBR_85066 are exactly identical! WARNING: Sequences tr_G1MTJ7_G1MTJ7_MELGA_9103 and tr_A0A091J0J8_A0A091J0J8_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G1MTJ7_G1MTJ7_MELGA_9103 and tr_A0A093PKZ3_A0A093PKZ3_9PASS_328815 are exactly identical! WARNING: Sequences tr_G1MTJ7_G1MTJ7_MELGA_9103 and tr_A0A091V336_A0A091V336_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G1MTJ7_G1MTJ7_MELGA_9103 and tr_A0A087RI62_A0A087RI62_APTFO_9233 are exactly identical! WARNING: Sequences tr_G1MTJ7_G1MTJ7_MELGA_9103 and tr_A0A099ZMR3_A0A099ZMR3_TINGU_94827 are exactly identical! WARNING: Sequences tr_G1MTJ7_G1MTJ7_MELGA_9103 and tr_A0A0A0A7S2_A0A0A0A7S2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_G1MTJ7_G1MTJ7_MELGA_9103 and tr_A0A091IFA0_A0A091IFA0_CALAN_9244 are exactly identical! WARNING: Sequences tr_C5FZC8_C5FZC8_ARTOC_554155 and tr_E4UWB1_E4UWB1_ARTGP_535722 are exactly identical! WARNING: Sequences tr_C5FZC8_C5FZC8_ARTOC_554155 and tr_F2SGY4_F2SGY4_TRIRC_559305 are exactly identical! WARNING: Sequences tr_C5FZC8_C5FZC8_ARTOC_554155 and tr_F2PVC3_F2PVC3_TRIEC_559882 are exactly identical! WARNING: Sequences tr_C5FZC8_C5FZC8_ARTOC_554155 and tr_A0A059J0L2_A0A059J0L2_9EURO_1215338 are exactly identical! WARNING: Sequences tr_C5FZC8_C5FZC8_ARTOC_554155 and tr_A0A178F0E6_A0A178F0E6_TRIRU_5551 are exactly identical! WARNING: Sequences tr_W5PJW5_W5PJW5_SHEEP_9940 and sp_Q0IIL5_SNX10_BOVIN_9913 are exactly identical! WARNING: Sequences tr_J4UII9_J4UII9_BEAB2_655819 and tr_A0A0A2VK64_A0A0A2VK64_BEABA_1245745 are exactly identical! WARNING: Sequences tr_A0A088A6E1_A0A088A6E1_APIME_7460 and tr_A0A0N0BC78_A0A0N0BC78_9HYME_166423 are exactly identical! WARNING: Sequences tr_A0A088A6E1_A0A088A6E1_APIME_7460 and tr_A0A0L7R8J5_A0A0L7R8J5_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A088A6E1_A0A088A6E1_APIME_7460 and tr_A0A2A3E517_A0A2A3E517_APICC_94128 are exactly identical! WARNING: Sequences tr_G9P2Z8_G9P2Z8_HYPAI_452589 and tr_A0A2T4BLY7_A0A2T4BLY7_9HYPO_58853 are exactly identical! WARNING: Sequences sp_Q9Y5X0_SNX10_HUMAN_9606 and tr_F7IN97_F7IN97_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q9Y5X0_SNX10_HUMAN_9606 and tr_A0A0D9RNY9_A0A0D9RNY9_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q9Y5X0_SNX10_HUMAN_9606 and tr_A0A2K6C054_A0A2K6C054_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q9Y5X0_SNX10_HUMAN_9606 and tr_A0A2K5XL31_A0A2K5XL31_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7BF03_F7BF03_MACMU_9544 and tr_G7PU67_G7PU67_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7BF03_F7BF03_MACMU_9544 and tr_A0A096P418_A0A096P418_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7BF03_F7BF03_MACMU_9544 and tr_A0A0D9S3Q8_A0A0D9S3Q8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7BF03_F7BF03_MACMU_9544 and tr_A0A2K5LHC2_A0A2K5LHC2_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7BF03_F7BF03_MACMU_9544 and tr_A0A2K5ZPA1_A0A2K5ZPA1_MANLE_9568 are exactly identical! WARNING: Sequences tr_G7MLM5_G7MLM5_MACMU_9544 and tr_G7P0P6_G7P0P6_MACFA_9541 are exactly identical! WARNING: Sequences tr_G7MLM5_G7MLM5_MACMU_9544 and tr_A0A2I3M5Z5_A0A2I3M5Z5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7XFT8_G7XFT8_ASPKW_1033177 and tr_G3YBF5_G3YBF5_ASPNA_380704 are exactly identical! WARNING: Sequences tr_G7XFT8_G7XFT8_ASPKW_1033177 and tr_A0A100IPG4_A0A100IPG4_ASPNG_5061 are exactly identical! WARNING: Sequences tr_G7XFT8_G7XFT8_ASPKW_1033177 and tr_A0A146FST0_A0A146FST0_9EURO_1069201 are exactly identical! WARNING: Sequences tr_G7XFT8_G7XFT8_ASPKW_1033177 and tr_A0A1L9N209_A0A1L9N209_ASPTU_767770 are exactly identical! WARNING: Sequences tr_G7XFT8_G7XFT8_ASPKW_1033177 and tr_A0A1L9WX67_A0A1L9WX67_ASPAC_690307 are exactly identical! WARNING: Sequences tr_G7XFT8_G7XFT8_ASPKW_1033177 and tr_A0A317WA89_A0A317WA89_9EURO_1448314 are exactly identical! WARNING: Sequences tr_G7XFT8_G7XFT8_ASPKW_1033177 and tr_A0A319AP30_A0A319AP30_9EURO_1450533 are exactly identical! WARNING: Sequences tr_G7XFT8_G7XFT8_ASPKW_1033177 and tr_A0A319C6A7_A0A319C6A7_9EURO_1448315 are exactly identical! WARNING: Sequences tr_G7XFT8_G7XFT8_ASPKW_1033177 and tr_A0A318ZBX1_A0A318ZBX1_9EURO_1450539 are exactly identical! WARNING: Sequences tr_G7XFT8_G7XFT8_ASPKW_1033177 and tr_A0A2V5HQY2_A0A2V5HQY2_9EURO_1450541 are exactly identical! WARNING: Sequences tr_G7XFT8_G7XFT8_ASPKW_1033177 and tr_A0A2V5HQ42_A0A2V5HQ42_9EURO_1450538 are exactly identical! WARNING: Sequences tr_D5GBI1_D5GBI1_TUBMM_656061 and tr_A0A2T6ZJN0_A0A2T6ZJN0_TUBBO_42251 are exactly identical! WARNING: Sequences tr_G9MRI7_G9MRI7_HYPVG_413071 and tr_A0A0G0A0B9_A0A0G0A0B9_TRIHA_5544 are exactly identical! WARNING: Sequences tr_G9MRI7_G9MRI7_HYPVG_413071 and tr_A0A2T3ZJL3_A0A2T3ZJL3_9HYPO_1042311 are exactly identical! WARNING: Sequences tr_G9MRI7_G9MRI7_HYPVG_413071 and tr_A0A2T4ATF8_A0A2T4ATF8_TRIHA_983964 are exactly identical! WARNING: Sequences tr_H1UZ98_H1UZ98_COLHI_759273 and tr_E3QF29_E3QF29_COLGM_645133 are exactly identical! WARNING: Sequences tr_H1UZ98_H1UZ98_COLHI_759273 and tr_A0A066X8V2_A0A066X8V2_COLSU_1173701 are exactly identical! WARNING: Sequences tr_H1UZ98_H1UZ98_COLHI_759273 and tr_A0A166R927_A0A166R927_9PEZI_708197 are exactly identical! WARNING: Sequences tr_H1UZ98_H1UZ98_COLHI_759273 and tr_A0A162P6J7_A0A162P6J7_9PEZI_1573173 are exactly identical! WARNING: Sequences tr_H1UZ98_H1UZ98_COLHI_759273 and tr_A0A1G4BPC7_A0A1G4BPC7_9PEZI_1209926 are exactly identical! WARNING: Sequences tr_F4PE26_F4PE26_BATDJ_684364 and tr_A0A177WHE2_A0A177WHE2_BATDE_403673 are exactly identical! WARNING: Sequences tr_H0ZAA1_H0ZAA1_TAEGU_59729 and tr_U3KBI9_U3KBI9_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZAA1_H0ZAA1_TAEGU_59729 and tr_A0A091FQN6_A0A091FQN6_9AVES_55661 are exactly identical! WARNING: Sequences tr_H0ZAA1_H0ZAA1_TAEGU_59729 and tr_A0A1V4KYE9_A0A1V4KYE9_PATFA_372326 are exactly identical! WARNING: Sequences tr_H0ZAA1_H0ZAA1_TAEGU_59729 and tr_A0A218UL50_A0A218UL50_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZAA1_H0ZAA1_TAEGU_59729 and tr_A0A226MG22_A0A226MG22_CALSU_9009 are exactly identical! WARNING: Sequences tr_H0ZAA1_H0ZAA1_TAEGU_59729 and tr_A0A226PJY7_A0A226PJY7_COLVI_9014 are exactly identical! WARNING: Sequences tr_A8XFF5_A8XFF5_CAEBR_6238 and tr_A0A2G5VJF0_A0A2G5VJF0_9PELO_1611254 are exactly identical! WARNING: Sequences tr_B4MC73_B4MC73_DROVI_7244 and tr_B4K7G6_B4K7G6_DROMO_7230 are exactly identical! WARNING: Sequences tr_E6ZUP4_E6ZUP4_SPORE_999809 and tr_A0A0F7RVF5_A0A0F7RVF5_9BASI_49012 are exactly identical! WARNING: Sequences tr_B3S9L6_B3S9L6_TRIAD_10228 and tr_A0A369S5R5_A0A369S5R5_9METZ_287889 are exactly identical! WARNING: Sequences tr_W7LKH9_W7LKH9_GIBM7_334819 and tr_X0CV47_X0CV47_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_W7LKH9_W7LKH9_GIBM7_334819 and tr_A0A2K0VVS6_A0A2K0VVS6_GIBNY_42673 are exactly identical! WARNING: Sequences tr_A0A0D2XIB2_A0A0D2XIB2_FUSO4_426428 and tr_N4UM70_N4UM70_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_A0A0D2XIB2_A0A0D2XIB2_FUSO4_426428 and tr_A0A0M9ESL3_A0A0M9ESL3_FUSLA_179993 are exactly identical! WARNING: Sequences tr_A0A0D2XIB2_A0A0D2XIB2_FUSO4_426428 and sp_Q4I1H6_SNX3_GIBZE_229533 are exactly identical! WARNING: Sequences tr_A0A0D2XIB2_A0A0D2XIB2_FUSO4_426428 and tr_A0A1B8AU46_A0A1B8AU46_FUSPO_36050 are exactly identical! WARNING: Sequences tr_A0A0D2XIB2_A0A0D2XIB2_FUSO4_426428 and tr_A0A2H3TF67_A0A2H3TF67_FUSOX_5507 are exactly identical! WARNING: Sequences tr_A0A0D2XIB2_A0A0D2XIB2_FUSO4_426428 and tr_A0A2H3GUT6_A0A2H3GUT6_FUSOX_327505 are exactly identical! WARNING: Sequences tr_A0A0D2XIB2_A0A0D2XIB2_FUSO4_426428 and tr_A0A2L2TP53_A0A2L2TP53_9HYPO_56646 are exactly identical! WARNING: Sequences tr_A0A0D2XIB2_A0A0D2XIB2_FUSO4_426428 and tr_A0A365N1Q7_A0A365N1Q7_GIBIN_948311 are exactly identical! WARNING: Sequences tr_K9GAK7_K9GAK7_PEND2_1170229 and tr_A0A0A2L803_A0A0A2L803_PENIT_40296 are exactly identical! WARNING: Sequences tr_K9GAK7_K9GAK7_PEND2_1170229 and tr_A0A0A2JLJ2_A0A0A2JLJ2_PENEN_27334 are exactly identical! WARNING: Sequences tr_K9GAK7_K9GAK7_PEND2_1170229 and tr_W6QCH3_W6QCH3_PENRF_1365484 are exactly identical! WARNING: Sequences tr_K9GAK7_K9GAK7_PEND2_1170229 and tr_A0A0M8P4P4_A0A0M8P4P4_9EURO_229535 are exactly identical! WARNING: Sequences tr_K9GAK7_K9GAK7_PEND2_1170229 and tr_A0A0G4P2T1_A0A0G4P2T1_PENCA_1429867 are exactly identical! WARNING: Sequences tr_K9GAK7_K9GAK7_PEND2_1170229 and tr_A0A117NRP0_A0A117NRP0_9EURO_48697 are exactly identical! WARNING: Sequences tr_K9GAK7_K9GAK7_PEND2_1170229 and tr_A0A1V6NWU7_A0A1V6NWU7_9EURO_60169 are exactly identical! WARNING: Sequences tr_K9GAK7_K9GAK7_PEND2_1170229 and tr_A0A1V6S6M3_A0A1V6S6M3_9EURO_29845 are exactly identical! WARNING: Sequences tr_K9GAK7_K9GAK7_PEND2_1170229 and tr_A0A1V6R648_A0A1V6R648_9EURO_60172 are exactly identical! WARNING: Sequences tr_L2FK87_L2FK87_COLFN_1213859 and tr_N4V2A3_N4V2A3_COLOR_1213857 are exactly identical! WARNING: Sequences tr_L2FK87_L2FK87_COLFN_1213859 and tr_T0KM44_T0KM44_COLGC_1237896 are exactly identical! WARNING: Sequences tr_L2FK87_L2FK87_COLFN_1213859 and tr_A0A1Q8RP00_A0A1Q8RP00_9PEZI_708187 are exactly identical! WARNING: Sequences tr_S2JQM6_S2JQM6_MUCC1_1220926 and tr_A0A162RFJ5_A0A162RFJ5_MUCCL_747725 are exactly identical! WARNING: Sequences tr_W9WAA3_W9WAA3_9EURO_1182543 and tr_A0A0D2BVA4_A0A0D2BVA4_9EURO_91928 are exactly identical! WARNING: Sequences tr_W9WAA3_W9WAA3_9EURO_1182543 and tr_A0A0D2AXA7_A0A0D2AXA7_9EURO_215243 are exactly identical! WARNING: Sequences tr_W9WAA3_W9WAA3_9EURO_1182543 and tr_A0A0D2JYX3_A0A0D2JYX3_9EURO_1442371 are exactly identical! WARNING: Sequences tr_W9WAA3_W9WAA3_9EURO_1182543 and tr_A0A0D2FXW9_A0A0D2FXW9_9EURO_5601 are exactly identical! WARNING: Sequences tr_W9WAA3_W9WAA3_9EURO_1182543 and tr_A0A0D2BDL2_A0A0D2BDL2_9EURO_348802 are exactly identical! WARNING: Sequences tr_W9WAA3_W9WAA3_9EURO_1182543 and tr_A0A0D2AHH3_A0A0D2AHH3_9EURO_569365 are exactly identical! WARNING: Sequences tr_W9WAA3_W9WAA3_9EURO_1182543 and tr_A0A178ZGZ5_A0A178ZGZ5_9EURO_1367422 are exactly identical! WARNING: Sequences tr_A0A017SHC3_A0A017SHC3_9EURO_1388766 and tr_A0A1E3BBZ7_A0A1E3BBZ7_9EURO_573508 are exactly identical! WARNING: Sequences tr_A0A017SHC3_A0A017SHC3_9EURO_1388766 and tr_A0A1L9VK19_A0A1L9VK19_ASPGL_1160497 are exactly identical! WARNING: Sequences tr_A0A044S3S7_A0A044S3S7_ONCVO_6282 and tr_A0A182E9J1_A0A182E9J1_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A067SA91_A0A067SA91_GALM3_685588 and tr_A0A0C2Y755_A0A0C2Y755_HEBCY_686832 are exactly identical! WARNING: Sequences tr_A0A074XCL5_A0A074XCL5_9PEZI_1043004 and tr_A0A074ZDX0_A0A074ZDX0_9PEZI_1043005 are exactly identical! WARNING: Sequences tr_A0A074XCL5_A0A074XCL5_9PEZI_1043004 and tr_A0A074W4S8_A0A074W4S8_9PEZI_1043003 are exactly identical! WARNING: Sequences tr_A0A074XCL5_A0A074XCL5_9PEZI_1043004 and tr_A0A074YQK1_A0A074YQK1_AURPU_1043002 are exactly identical! WARNING: Sequences tr_A0A060SL86_A0A060SL86_PYCCI_5643 and tr_A0A1Y2I7X5_A0A1Y2I7X5_PYCCO_1353009 are exactly identical! WARNING: Sequences tr_A0A0B2X537_A0A0B2X537_METAS_1081103 and tr_A0A0B4H619_A0A0B4H619_METMF_1276143 are exactly identical! WARNING: Sequences tr_A0A0B2X537_A0A0B2X537_METAS_1081103 and tr_A0A0D9NK80_A0A0D9NK80_METAN_1291518 are exactly identical! WARNING: Sequences tr_A0A0B2X537_A0A0B2X537_METAS_1081103 and tr_A0A179F580_A0A179F580_METCM_1380566 are exactly identical! WARNING: Sequences tr_A0A0B2X537_A0A0B2X537_METAS_1081103 and tr_A0A162IKH6_A0A162IKH6_9HYPO_1081109 are exactly identical! WARNING: Sequences tr_A0A0B2X537_A0A0B2X537_METAS_1081103 and tr_A0A166XGT6_A0A166XGT6_9HYPO_1081105 are exactly identical! WARNING: Sequences tr_A0A0F8X4J3_A0A0F8X4J3_9EURO_308745 and tr_A0A2T5M004_A0A2T5M004_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0K0G1Q9_A0A0K0G1Q9_STRVS_75913 and tr_A0A0N5CCC2_A0A0N5CCC2_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0K0DW15_A0A0K0DW15_STRER_6248 and tr_A0A090L6B3_A0A090L6B3_STRRB_34506 are exactly identical! WARNING: Sequences tr_A0A0K8LCB0_A0A0K8LCB0_9EURO_91492 and tr_A0A397GZD1_A0A397GZD1_9EURO_41047 are exactly identical! WARNING: Sequences tr_A0A0A1P596_A0A0A1P596_9FUNG_58291 and tr_A0A367KHU2_A0A367KHU2_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A151MJH3_A0A151MJH3_ALLMI_8496 and tr_A0A1U7RVJ3_A0A1U7RVJ3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A026W2F6_A0A026W2F6_OOCBI_2015173 and tr_A0A195CRM6_A0A195CRM6_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A091V1I6_A0A091V1I6_NIPNI_128390 and tr_A0A087RIC7_A0A087RIC7_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091V1I6_A0A091V1I6_NIPNI_128390 and tr_A0A0A0AZT3_A0A0A0AZT3_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091V601_A0A091V601_NIPNI_128390 and tr_A0A091WKF0_A0A091WKF0_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A2I0LSD1_A0A2I0LSD1_COLLI_8932 and tr_A0A1V4JQF3_A0A1V4JQF3_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0RIS6_A0A0V0RIS6_9BILA_6336 and tr_A0A0V1NKF1_A0A0V1NKF1_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1CQZ7_A0A0V1CQZ7_TRIBR_45882 and tr_A0A0V0X5C8_A0A0V0X5C8_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1CQZ7_A0A0V1CQZ7_TRIBR_45882 and tr_A0A0V0V7D7_A0A0V0V7D7_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CQZ7_A0A0V1CQZ7_TRIBR_45882 and tr_A0A0V1KQT3_A0A0V1KQT3_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1CQZ7_A0A0V1CQZ7_TRIBR_45882 and tr_A0A0V1AA81_A0A0V1AA81_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1CQZ7_A0A0V1CQZ7_TRIBR_45882 and tr_A0A0V1JKT7_A0A0V1JKT7_TRIPS_6337 are exactly identical! WARNING: Sequences tr_A0A0V1CQZ7_A0A0V1CQZ7_TRIBR_45882 and tr_A0A0V1MP99_A0A0V1MP99_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V1CQZ7_A0A0V1CQZ7_TRIBR_45882 and tr_A0A0V1GYL6_A0A0V1GYL6_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0V1CQZ7_A0A0V1CQZ7_TRIBR_45882 and tr_A0A0V0UD81_A0A0V0UD81_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A132B6U3_A0A132B6U3_9HELO_149040 and tr_A0A1L7XGI8_A0A1L7XGI8_9HELO_576137 are exactly identical! WARNING: Sequences tr_A0A165A559_A0A165A559_9HOMO_1314777 and tr_A0A166IAX6_A0A166IAX6_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A177CIB6_A0A177CIB6_9PLEO_1460663 and tr_A0A2V1E8J2_A0A2V1E8J2_9PLEO_97972 are exactly identical! WARNING: Sequences tr_A0A178B7D3_A0A178B7D3_9PLEO_765868 and tr_A0A178EN28_A0A178EN28_9PLEO_765867 are exactly identical! WARNING: Sequences tr_A0A1B8DZD6_A0A1B8DZD6_9PEZI_1524831 and tr_A0A1B8GTX9_A0A1B8GTX9_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A1B8DZD6_A0A1B8DZD6_9PEZI_1524831 and tr_A0A1B8CRA6_A0A1B8CRA6_9PEZI_1622147 are exactly identical! WARNING: Sequences tr_A0A1B8DZD6_A0A1B8DZD6_9PEZI_1524831 and tr_A0A1B8EK43_A0A1B8EK43_9PEZI_1622149 are exactly identical! WARNING: Sequences tr_A0A1V8UAN8_A0A1V8UAN8_9PEZI_1974281 and tr_A0A1V8SBP6_A0A1V8SBP6_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A226N7Q6_A0A226N7Q6_CALSU_9009 and tr_A0A226NDD1_A0A226NDD1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2H3DB31_A0A2H3DB31_ARMGA_47427 and tr_A0A2H3CEP1_A0A2H3CEP1_9AGAR_1076256 are exactly identical! WARNING: Sequences tr_A0A2H3DB31_A0A2H3DB31_ARMGA_47427 and tr_A0A284QLJ7_A0A284QLJ7_9AGAR_47428 are exactly identical! WARNING: Sequences tr_A0A2H3G1V7_A0A2H3G1V7_9HELO_946125 and tr_A0A218YYN6_A0A218YYN6_9HELO_503106 are exactly identical! WARNING: Sequences tr_A0A2K5MRA5_A0A2K5MRA5_CERAT_9531 and tr_A0A2K5XWP8_A0A2K5XWP8_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4AM83_A0A2U4AM83_TURTR_9739 and tr_A0A2Y9P050_A0A2Y9P050_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A317W0R8_A0A317W0R8_9EURO_1450535 and tr_A0A319EDH6_A0A319EDH6_9EURO_1448318 are exactly identical! WARNING: Sequences tr_A0A2Y9T9J1_A0A2Y9T9J1_PHYCD_9755 and tr_A0A383Z8Q6_A0A383Z8Q6_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A369H1C6_A0A369H1C6_9HYPO_2039875 and tr_A0A369HJX9_A0A369HJX9_9HYPO_2039874 are exactly identical! WARNING: Sequences tr_A0A369H1C6_A0A369H1C6_9HYPO_2039875 and tr_A0A367LP17_A0A367LP17_9HYPO_1330021 are exactly identical! WARNING: Duplicate sequences found: 258 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5X0/4_raxmlng_ancestral/Q9Y5X0.raxml.reduced.phy Alignment comprises 1 partitions and 201 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 201 Gaps: 31.38 % Invariant sites: 0.50 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5X0/4_raxmlng_ancestral/Q9Y5X0.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5X0/3_mltree/Q9Y5X0.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 51 / 4080 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -46143.098423 [00:00:00 -46143.098423] Initial branch length optimization [00:00:00 -44950.641738] Model parameter optimization (eps = 0.100000) [00:00:25] Tree #1, final logLikelihood: -44778.272214 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.184808,0.412887) (0.104596,0.591868) (0.452947,0.746322) (0.257650,2.032778) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5X0/4_raxmlng_ancestral/Q9Y5X0.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5X0/4_raxmlng_ancestral/Q9Y5X0.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5X0/4_raxmlng_ancestral/Q9Y5X0.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5X0/4_raxmlng_ancestral/Q9Y5X0.raxml.log Analysis started: 17-Jul-2021 08:02:22 / finished: 17-Jul-2021 08:02:49 Elapsed time: 27.099 seconds