RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 04-Jul-2021 14:42:51 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y5S2/2_msa/Q9Y5S2_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y5S2/3_mltree/Q9Y5S2 --seed 2 --threads 5 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y5S2/2_msa/Q9Y5S2_trimmed_msa.fasta [00:00:00] Loaded alignment with 974 taxa and 304 sites WARNING: Sequences tr_B4QBJ0_B4QBJ0_DROSI_7240 and sp_Q9W1B0_GEK_DROME_7227 are exactly identical! WARNING: Sequences tr_A0A1D5PD57_A0A1D5PD57_CHICK_9031 and tr_U3ILS8_U3ILS8_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PD57_A0A1D5PD57_CHICK_9031 and tr_A0A091FNM7_A0A091FNM7_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A1D5PD57_A0A1D5PD57_CHICK_9031 and tr_A0A2I0MKS5_A0A2I0MKS5_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PD57_A0A1D5PD57_CHICK_9031 and tr_A0A1V4J2G1_A0A1V4J2G1_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5PK41_A0A1D5PK41_CHICK_9031 and tr_G1NC22_G1NC22_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1BU01_E1BU01_CHICK_9031 and tr_G1NL00_G1NL00_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1BU01_E1BU01_CHICK_9031 and tr_A0A091V7C0_A0A091V7C0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1BU01_E1BU01_CHICK_9031 and tr_A0A087R5A0_A0A087R5A0_APTFO_9233 are exactly identical! WARNING: Sequences tr_E1BU01_E1BU01_CHICK_9031 and tr_A0A093HG47_A0A093HG47_STRCA_441894 are exactly identical! WARNING: Sequences tr_E1BU01_E1BU01_CHICK_9031 and tr_A0A091WAN2_A0A091WAN2_OPIHO_30419 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_H0YRN8_H0YRN8_TAEGU_59729 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_U3JKN9_U3JKN9_FICAL_59894 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_U3J2B3_U3J2B3_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A091F0Q9_A0A091F0Q9_CORBR_85066 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A091JI71_A0A091JI71_EGRGA_188379 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A093PK26_A0A093PK26_9PASS_328815 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A091VNX0_A0A091VNX0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A091V6W0_A0A091V6W0_OPIHO_30419 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A099Z0Q2_A0A099Z0Q2_TINGU_94827 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A0A0AVM9_A0A0A0AVM9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A2I0M026_A0A2I0M026_COLLI_8932 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A1V4KX44_A0A1V4KX44_PATFA_372326 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A218UKX3_A0A218UKX3_9PASE_299123 are exactly identical! WARNING: Sequences tr_E1C8Z7_E1C8Z7_CHICK_9031 and tr_A0A226NIX5_A0A226NIX5_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NUB2_F1NUB2_CHICK_9031 and tr_G1N2H3_G1N2H3_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NUB2_F1NUB2_CHICK_9031 and tr_U3KAH6_U3KAH6_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NUB2_F1NUB2_CHICK_9031 and tr_A0A091F4A6_A0A091F4A6_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1NUB2_F1NUB2_CHICK_9031 and tr_A0A091IQF0_A0A091IQF0_EGRGA_188379 are exactly identical! WARNING: Sequences tr_F1NUB2_F1NUB2_CHICK_9031 and tr_A0A091VQN4_A0A091VQN4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NUB2_F1NUB2_CHICK_9031 and tr_A0A087RE81_A0A087RE81_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NUB2_F1NUB2_CHICK_9031 and tr_A0A091WCU2_A0A091WCU2_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F1NUB2_F1NUB2_CHICK_9031 and tr_A0A099ZCX1_A0A099ZCX1_TINGU_94827 are exactly identical! WARNING: Sequences tr_F1NUB2_F1NUB2_CHICK_9031 and tr_A0A093GA35_A0A093GA35_DRYPU_118200 are exactly identical! WARNING: Sequences tr_F1NUB2_F1NUB2_CHICK_9031 and tr_A0A218UJG9_A0A218UJG9_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NUB2_F1NUB2_CHICK_9031 and tr_A0A226PMR9_A0A226PMR9_COLVI_9014 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A2I3HK74_A0A2I3HK74_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_G1PP69_G1PP69_MYOLU_59463 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_G3HUX3_G3HUX3_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_G3R2B7_G3R2B7_GORGO_9595 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_G1SMN4_G1SMN4_RABIT_9986 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_F1PU60_F1PU60_CANLF_9615 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A2I3T6I0_A0A2I3T6I0_PANTR_9598 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_F6XUQ9_F6XUQ9_HORSE_9796 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_W5PGC0_W5PGC0_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and sp_Q63644_ROCK1_RAT_10116 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_I3N5C1_I3N5C1_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_H0X6A1_H0X6A1_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and sp_Q13464_ROCK1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_F6T5Y1_F6T5Y1_MACMU_9544 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_G5BTS2_G5BTS2_HETGA_10181 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_F7IR26_F7IR26_CALJA_9483 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_I3LFH3_I3LFH3_PIG_9823 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_G1LJU8_G1LJU8_AILME_9646 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_G7PWH1_G7PWH1_MACFA_9541 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_F1MF50_F1MF50_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A2I2UXM8_A0A2I2UXM8_FELCA_9685 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A2I3LC55_A0A2I3LC55_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A0D9RYH3_A0A0D9RYH3_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A1S3WUE6_A0A1S3WUE6_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A1S3F137_A0A1S3F137_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A1U7R0D3_A0A1U7R0D3_MESAU_10036 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A2K5LSE2_A0A2K5LSE2_CERAT_9531 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A2K6CYX4_A0A2K6CYX4_MACNE_9545 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A2K6AB07_A0A2K6AB07_MANLE_9568 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A2R9BZ53_A0A2R9BZ53_PANPA_9597 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A2U4AYR8_A0A2U4AYR8_TURTR_9739 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A2U3ZRM2_A0A2U3ZRM2_ODORO_9708 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A2U3XNQ7_A0A2U3XNQ7_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A2Y9ISI9_A0A2Y9ISI9_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A2Y9PB74_A0A2Y9PB74_DELLE_9749 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A2Y9SKQ6_A0A2Y9SKQ6_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A384C1N6_A0A384C1N6_URSMA_29073 are exactly identical! WARNING: Sequences sp_P70335_ROCK1_MOUSE_10090 and tr_A0A384AW62_A0A384AW62_BALAS_310752 are exactly identical! WARNING: Sequences sp_P70336_ROCK2_MOUSE_10090 and tr_G1TY77_G1TY77_RABIT_9986 are exactly identical! WARNING: Sequences sp_P70336_ROCK2_MOUSE_10090 and tr_A0A2Y9QPS9_A0A2Y9QPS9_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YQ38_M3YQ38_MUSPF_9669 and tr_F1PE53_F1PE53_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YQ38_M3YQ38_MUSPF_9669 and tr_F6PML3_F6PML3_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YQ38_M3YQ38_MUSPF_9669 and tr_W5Q2Y6_W5Q2Y6_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YQ38_M3YQ38_MUSPF_9669 and sp_M3TYT0_ROCK2_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YQ38_M3YQ38_MUSPF_9669 and tr_F1N319_F1N319_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YQ38_M3YQ38_MUSPF_9669 and sp_Q28021_ROCK2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YQ38_M3YQ38_MUSPF_9669 and tr_M3WUL5_M3WUL5_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YQ38_M3YQ38_MUSPF_9669 and tr_A0A2U4C0C9_A0A2U4C0C9_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3YQ38_M3YQ38_MUSPF_9669 and tr_A0A2U3W1L2_A0A2U3W1L2_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YQ38_M3YQ38_MUSPF_9669 and tr_A0A2U3Y8H8_A0A2U3Y8H8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YQ38_M3YQ38_MUSPF_9669 and tr_A0A2Y9KC77_A0A2Y9KC77_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YQ38_M3YQ38_MUSPF_9669 and tr_A0A2Y9LS06_A0A2Y9LS06_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YQ38_M3YQ38_MUSPF_9669 and tr_A0A2Y9S7V7_A0A2Y9S7V7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YQ38_M3YQ38_MUSPF_9669 and tr_A0A384B7Q2_A0A384B7Q2_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_G1RIH6_G1RIH6_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and sp_Q5R8M1_STK38_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_H2QSW7_H2QSW7_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_I3MIC6_I3MIC6_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and sp_Q15208_STK38_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_F7D1P8_F7D1P8_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_U3E4E5_U3E4E5_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_G7P3B9_G7P3B9_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_M3WP47_M3WP47_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_A0A096NHS5_A0A096NHS5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_A0A0D9RD24_A0A0D9RD24_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_A0A2K5LUJ3_A0A2K5LUJ3_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_A0A2K6BFX2_A0A2K6BFX2_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_A0A2K5Y8D8_A0A2K5Y8D8_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_A0A2R9BT32_A0A2R9BT32_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_A0A2U3ZQ63_A0A2U3ZQ63_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_A0A2Y9JNH9_A0A2Y9JNH9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YS05_M3YS05_MUSPF_9669 and tr_A0A384CAX4_A0A384CAX4_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YWK8_M3YWK8_MUSPF_9669 and tr_E2R1X7_E2R1X7_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YWK8_M3YWK8_MUSPF_9669 and tr_F7A5X7_F7A5X7_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YWK8_M3YWK8_MUSPF_9669 and tr_G1LQY7_G1LQY7_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YWK8_M3YWK8_MUSPF_9669 and tr_A0A2I2UU64_A0A2I2UU64_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YWK8_M3YWK8_MUSPF_9669 and tr_A0A2U3ZST4_A0A2U3ZST4_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YWK8_M3YWK8_MUSPF_9669 and tr_A0A2U3YG98_A0A2U3YG98_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YWK8_M3YWK8_MUSPF_9669 and tr_A0A2Y9JWZ2_A0A2Y9JWZ2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YWK8_M3YWK8_MUSPF_9669 and tr_A0A384CFU4_A0A384CFU4_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I3H3V1_A0A2I3H3V1_NOMLE_61853 and tr_A0A2I2YAK7_A0A2I2YAK7_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3H3V1_A0A2I3H3V1_NOMLE_61853 and sp_Q9Y5S2_MRCKB_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3H3V1_A0A2I3H3V1_NOMLE_61853 and tr_F7HMH6_F7HMH6_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3H3V1_A0A2I3H3V1_NOMLE_61853 and tr_F7F5X4_F7F5X4_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3H3V1_A0A2I3H3V1_NOMLE_61853 and tr_G7PBP1_G7PBP1_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3H3V1_A0A2I3H3V1_NOMLE_61853 and tr_A0A096NJX0_A0A096NJX0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3H3V1_A0A2I3H3V1_NOMLE_61853 and tr_A0A2K5KX99_A0A2K5KX99_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3H3V1_A0A2I3H3V1_NOMLE_61853 and tr_A0A2K6CZY7_A0A2K6CZY7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3H3V1_A0A2I3H3V1_NOMLE_61853 and tr_A0A2K5Z9B4_A0A2K5Z9B4_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3H3V1_A0A2I3H3V1_NOMLE_61853 and tr_A0A2R9CHV9_A0A2R9CHV9_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3HRA5_A0A2I3HRA5_NOMLE_61853 and tr_A0A2I2ZFG1_A0A2I2ZFG1_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HRA5_A0A2I3HRA5_NOMLE_61853 and tr_H2N3I5_H2N3I5_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3HRA5_A0A2I3HRA5_NOMLE_61853 and tr_G1TX63_G1TX63_RABIT_9986 are exactly identical! WARNING: Sequences tr_A0A2I3HRA5_A0A2I3HRA5_NOMLE_61853 and tr_A0A2I3SG77_A0A2I3SG77_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HRA5_A0A2I3HRA5_NOMLE_61853 and sp_Q5VT25_MRCKA_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HRA5_A0A2I3HRA5_NOMLE_61853 and tr_A0A286ZYD7_A0A286ZYD7_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A2I3HRA5_A0A2I3HRA5_NOMLE_61853 and tr_A0A2I3LXJ5_A0A2I3LXJ5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3HRA5_A0A2I3HRA5_NOMLE_61853 and tr_A0A0D9RV25_A0A0D9RV25_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3HRA5_A0A2I3HRA5_NOMLE_61853 and tr_A0A2K5MLN7_A0A2K5MLN7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3HRA5_A0A2I3HRA5_NOMLE_61853 and tr_A0A2K6CDC8_A0A2K6CDC8_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3HRA5_A0A2I3HRA5_NOMLE_61853 and tr_A0A2K5ZJ72_A0A2K5ZJ72_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3HRA5_A0A2I3HRA5_NOMLE_61853 and tr_A0A2R9AG24_A0A2R9AG24_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3HRA5_A0A2I3HRA5_NOMLE_61853 and tr_A0A2U4A5D4_A0A2U4A5D4_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2I3HRA5_A0A2I3HRA5_NOMLE_61853 and tr_A0A2Y9NQ99_A0A2Y9NQ99_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2I3HRA5_A0A2I3HRA5_NOMLE_61853 and tr_A0A2Y9TBZ7_A0A2Y9TBZ7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2I3HRA5_A0A2I3HRA5_NOMLE_61853 and tr_A0A383YX24_A0A383YX24_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3ZBR7_M3ZBR7_NOMLE_61853 and tr_H2NGV3_H2NGV3_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3ZBR7_M3ZBR7_NOMLE_61853 and tr_F7E684_F7E684_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3ZBR7_M3ZBR7_NOMLE_61853 and tr_U3BCV6_U3BCV6_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3ZBR7_M3ZBR7_NOMLE_61853 and tr_G7PK27_G7PK27_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3ZBR7_M3ZBR7_NOMLE_61853 and tr_A0A0D9R5M2_A0A0D9R5M2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3ZBR7_M3ZBR7_NOMLE_61853 and tr_A0A2K5NAH5_A0A2K5NAH5_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3ZBR7_M3ZBR7_NOMLE_61853 and tr_A0A2K5XRK9_A0A2K5XRK9_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QHG5_G3QHG5_GORGO_9595 and tr_H2Q5N0_H2Q5N0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QHG5_G3QHG5_GORGO_9595 and sp_Q9Y2H1_ST38L_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QHG5_G3QHG5_GORGO_9595 and tr_A0A2R9A7E7_A0A2R9A7E7_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QQK5_G3QQK5_GORGO_9595 and tr_H2P6Y3_H2P6Y3_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QQK5_G3QQK5_GORGO_9595 and tr_K7AX49_K7AX49_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QQK5_G3QQK5_GORGO_9595 and sp_O75116_ROCK2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QQK5_G3QQK5_GORGO_9595 and tr_A0A2R9BR94_A0A2R9BR94_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1NML1_G1NML1_MELGA_9103 and tr_A0A093QIW8_A0A093QIW8_9PASS_328815 are exactly identical! WARNING: Sequences tr_G1NML1_G1NML1_MELGA_9103 and tr_A0A226N659_A0A226N659_CALSU_9009 are exactly identical! WARNING: Sequences tr_G1SZ34_G1SZ34_RABIT_9986 and tr_A0A2I2V5F1_A0A2I2V5F1_FELCA_9685 are exactly identical! WARNING: Sequences tr_Q29IT7_Q29IT7_DROPS_46245 and tr_B4HAM7_B4HAM7_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q29IT7_Q29IT7_DROPS_46245 and tr_B4IQY4_B4IQY4_DROPE_7234 are exactly identical! WARNING: Sequences tr_H2R2M9_H2R2M9_PANTR_9598 and sp_Q6DT37_MRCKG_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2R2M9_H2R2M9_PANTR_9598 and tr_A0A2R9AJ27_A0A2R9AJ27_PANPA_9597 are exactly identical! WARNING: Sequences tr_K7B806_K7B806_PANTR_9598 and sp_Q09013_DMPK_HUMAN_9606 are exactly identical! WARNING: Sequences tr_K7B806_K7B806_PANTR_9598 and tr_A0A2R9CR13_A0A2R9CR13_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7C3H3_F7C3H3_MONDO_13616 and tr_G3W8X1_G3W8X1_SARHA_9305 are exactly identical! WARNING: Sequences tr_F6YZG2_F6YZG2_HORSE_9796 and tr_G3U7V3_G3U7V3_LOXAF_9785 are exactly identical! WARNING: Sequences tr_F6YZG2_F6YZG2_HORSE_9796 and tr_A0A2U3VLC1_A0A2U3VLC1_ODORO_9708 are exactly identical! WARNING: Sequences tr_F6YZG2_F6YZG2_HORSE_9796 and tr_A0A2U3YGF7_A0A2U3YGF7_LEPWE_9713 are exactly identical! WARNING: Sequences tr_W5NW14_W5NW14_SHEEP_9940 and tr_F1MH45_F1MH45_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q7TT49_MRCKB_RAT_10116 and tr_H0WKS8_H0WKS8_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q7TT49_MRCKB_RAT_10116 and tr_A0A3Q0DTD6_A0A3Q0DTD6_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A088ALM0_A0A088ALM0_APIME_7460 and tr_A0A2A3E9V8_A0A2A3E9V8_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NZV1_A0A158NZV1_ATTCE_12957 and tr_F4WIC6_F4WIC6_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NZV1_A0A158NZV1_ATTCE_12957 and tr_A0A195BLB5_A0A195BLB5_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NZV1_A0A158NZV1_ATTCE_12957 and tr_A0A195CM24_A0A195CM24_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A0K0JGN2_A0A0K0JGN2_BRUMA_6279 and tr_A0A0N4TJZ8_A0A0N4TJZ8_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0K0JJA5_A0A0K0JJA5_BRUMA_6279 and tr_A0A158PQ70_A0A158PQ70_BRUPA_6280 are exactly identical! WARNING: Sequences tr_F6Z971_F6Z971_MACMU_9544 and tr_G7PPQ7_G7PPQ7_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6Z971_F6Z971_MACMU_9544 and tr_A0A2I3NFM3_A0A2I3NFM3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6Z971_F6Z971_MACMU_9544 and tr_A0A0D9R4X0_A0A0D9R4X0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6Z971_F6Z971_MACMU_9544 and tr_A0A2K5KIC8_A0A2K5KIC8_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6Z971_F6Z971_MACMU_9544 and tr_A0A2K6D1P3_A0A2K6D1P3_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6Z971_F6Z971_MACMU_9544 and tr_A0A2K5Y1U0_A0A2K5Y1U0_MANLE_9568 are exactly identical! WARNING: Sequences tr_H9G236_H9G236_MACMU_9544 and tr_F7INQ6_F7INQ6_CALJA_9483 are exactly identical! WARNING: Sequences tr_H9G236_H9G236_MACMU_9544 and tr_G7PLM0_G7PLM0_MACFA_9541 are exactly identical! WARNING: Sequences tr_H9G236_H9G236_MACMU_9544 and tr_A0A096NJ50_A0A096NJ50_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H9G236_H9G236_MACMU_9544 and tr_A0A0D9R4P6_A0A0D9R4P6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H9G236_H9G236_MACMU_9544 and tr_A0A1U7U0Y2_A0A1U7U0Y2_TARSY_1868482 are exactly identical! WARNING: Sequences tr_H9G236_H9G236_MACMU_9544 and tr_A0A2K5NWG9_A0A2K5NWG9_CERAT_9531 are exactly identical! WARNING: Sequences tr_H9G236_H9G236_MACMU_9544 and tr_A0A2K6E488_A0A2K6E488_MACNE_9545 are exactly identical! WARNING: Sequences tr_H9G236_H9G236_MACMU_9544 and tr_A0A2K5Y2N1_A0A2K5Y2N1_MANLE_9568 are exactly identical! WARNING: Sequences tr_G5BL22_G5BL22_HETGA_10181 and tr_A0A091D4N7_A0A091D4N7_FUKDA_885580 are exactly identical! WARNING: Sequences tr_E5S526_E5S526_TRISP_6334 and tr_A0A0V0RYB8_A0A0V0RYB8_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5S526_E5S526_TRISP_6334 and tr_A0A0V1DIC8_A0A0V1DIC8_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5S526_E5S526_TRISP_6334 and tr_A0A0V0XAG5_A0A0V0XAG5_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5S526_E5S526_TRISP_6334 and tr_A0A0V0VR42_A0A0V0VR42_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5S526_E5S526_TRISP_6334 and tr_A0A0V1L9H6_A0A0V1L9H6_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5S526_E5S526_TRISP_6334 and tr_A0A0V1A1N7_A0A0V1A1N7_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5S526_E5S526_TRISP_6334 and tr_A0A0V1P6Z6_A0A0V1P6Z6_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5S526_E5S526_TRISP_6334 and tr_A0A0V0UAN0_A0A0V0UAN0_9BILA_144512 are exactly identical! WARNING: Sequences tr_G3SWK1_G3SWK1_LOXAF_9785 and tr_A0A2Y9R8Y8_A0A2Y9R8Y8_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H0Z1X3_H0Z1X3_TAEGU_59729 and tr_A0A1V4JJ38_A0A1V4JJ38_PATFA_372326 are exactly identical! WARNING: Sequences tr_H0ZJ44_H0ZJ44_TAEGU_59729 and tr_U3JUJ8_U3JUJ8_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZJ44_H0ZJ44_TAEGU_59729 and tr_U3I4S8_U3I4S8_ANAPL_8839 are exactly identical! WARNING: Sequences tr_H0ZJ44_H0ZJ44_TAEGU_59729 and tr_A0A0Q3R9S9_A0A0Q3R9S9_AMAAE_12930 are exactly identical! WARNING: Sequences tr_H0ZJ44_H0ZJ44_TAEGU_59729 and tr_A0A091FJM2_A0A091FJM2_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZJ44_H0ZJ44_TAEGU_59729 and tr_A0A093Q7X2_A0A093Q7X2_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZJ44_H0ZJ44_TAEGU_59729 and tr_A0A091GDX0_A0A091GDX0_9AVES_55661 are exactly identical! WARNING: Sequences tr_H0ZJ44_H0ZJ44_TAEGU_59729 and tr_A0A2I0MW50_A0A2I0MW50_COLLI_8932 are exactly identical! WARNING: Sequences tr_H0ZJ44_H0ZJ44_TAEGU_59729 and tr_A0A091I6L8_A0A091I6L8_CALAN_9244 are exactly identical! WARNING: Sequences tr_H0ZJ44_H0ZJ44_TAEGU_59729 and tr_A0A1V4KHQ9_A0A1V4KHQ9_PATFA_372326 are exactly identical! WARNING: Sequences tr_H0ZJ44_H0ZJ44_TAEGU_59729 and tr_A0A218V1C6_A0A218V1C6_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZRG7_H0ZRG7_TAEGU_59729 and tr_U3JJF0_U3JJF0_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZRG7_H0ZRG7_TAEGU_59729 and tr_U3ISW9_U3ISW9_ANAPL_8839 are exactly identical! WARNING: Sequences tr_H0ZRG7_H0ZRG7_TAEGU_59729 and tr_A0A093PLK1_A0A093PLK1_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZRG7_H0ZRG7_TAEGU_59729 and tr_A0A091IDQ5_A0A091IDQ5_CALAN_9244 are exactly identical! WARNING: Sequences tr_H0ZRG7_H0ZRG7_TAEGU_59729 and tr_A0A3Q0FZJ0_A0A3Q0FZJ0_ALLSI_38654 are exactly identical! WARNING: Sequences tr_H0ZRG7_H0ZRG7_TAEGU_59729 and tr_A0A218UEP4_A0A218UEP4_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZRG7_H0ZRG7_TAEGU_59729 and tr_A0A226MNZ7_A0A226MNZ7_CALSU_9009 are exactly identical! WARNING: Sequences tr_H0ZRG7_H0ZRG7_TAEGU_59729 and tr_A0A226PHZ4_A0A226PHZ4_COLVI_9014 are exactly identical! WARNING: Sequences tr_H0ZS66_H0ZS66_TAEGU_59729 and tr_U3JW42_U3JW42_FICAL_59894 are exactly identical! WARNING: Sequences tr_F4WAW1_F4WAW1_ACREC_103372 and tr_A0A151WPA8_A0A151WPA8_9HYME_64791 are exactly identical! WARNING: Sequences tr_F4WAW1_F4WAW1_ACREC_103372 and tr_A0A151I4B6_A0A151I4B6_9HYME_520822 are exactly identical! WARNING: Sequences tr_F4WAW1_F4WAW1_ACREC_103372 and tr_A0A195EWD3_A0A195EWD3_9HYME_34720 are exactly identical! WARNING: Sequences tr_G0MXR2_G0MXR2_CAEBE_135651 and tr_G0PKK3_G0PKK3_CAEBE_135651 are exactly identical! WARNING: Sequences tr_G0MXR2_G0MXR2_CAEBE_135651 and tr_A8XUB2_A8XUB2_CAEBR_6238 are exactly identical! WARNING: Sequences tr_G0MXR2_G0MXR2_CAEBE_135651 and tr_A0A2G5TJZ1_A0A2G5TJZ1_9PELO_1611254 are exactly identical! WARNING: Sequences tr_A0A1B8XYA6_A0A1B8XYA6_XENTR_8364 and tr_Q6DIL2_Q6DIL2_XENTR_8364 are exactly identical! WARNING: Sequences tr_E3LUP7_E3LUP7_CAERE_31234 and tr_A0A261BXC9_A0A261BXC9_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A0A3Q0KR06_A0A3Q0KR06_SCHMA_6183 and tr_A0A3Q0KR10_A0A3Q0KR10_SCHMA_6183 are exactly identical! WARNING: Sequences tr_G1MHI0_G1MHI0_AILME_9646 and tr_A0A384DJW4_A0A384DJW4_URSMA_29073 are exactly identical! WARNING: Sequences tr_U3JMU5_U3JMU5_FICAL_59894 and tr_A0A091V3Q1_A0A091V3Q1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_U3JMU5_U3JMU5_FICAL_59894 and tr_A0A091WJJ8_A0A091WJJ8_OPIHO_30419 are exactly identical! WARNING: Sequences tr_U3JMU5_U3JMU5_FICAL_59894 and tr_A0A0A0A7D5_A0A0A0A7D5_CHAVO_50402 are exactly identical! WARNING: Sequences tr_U3JMU5_U3JMU5_FICAL_59894 and tr_A0A093GAV0_A0A093GAV0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_U3JMU5_U3JMU5_FICAL_59894 and tr_A0A218UH16_A0A218UH16_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3IVP2_U3IVP2_ANAPL_8839 and tr_A0A091G1Z5_A0A091G1Z5_9AVES_55661 are exactly identical! WARNING: Sequences tr_U3IVP2_U3IVP2_ANAPL_8839 and tr_A0A0A0AT85_A0A0A0AT85_CHAVO_50402 are exactly identical! WARNING: Sequences tr_U3IVP2_U3IVP2_ANAPL_8839 and tr_A0A091HJA0_A0A091HJA0_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A044U2J3_A0A044U2J3_ONCVO_6282 and tr_A0A182E4E5_A0A182E4E5_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A158N7Z8_A0A158N7Z8_ONCVO_6282 and tr_A0A182DYX1_A0A182DYX1_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A087Y411_A0A087Y411_POEFO_48698 and tr_A0A096LZQ2_A0A096LZQ2_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A0D9S4G6_A0A0D9S4G6_CHLSB_60711 and tr_A0A2K5LKY4_A0A2K5LKY4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0D9S4G6_A0A0D9S4G6_CHLSB_60711 and tr_A0A2K5Y543_A0A2K5Y543_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A151NEK7_A0A151NEK7_ALLMI_8496 and tr_A0A1U7SCA9_A0A1U7SCA9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151P3J5_A0A151P3J5_ALLMI_8496 and tr_A0A3Q0HJR3_A0A3Q0HJR3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091JRJ8_A0A091JRJ8_EGRGA_188379 and tr_A0A091VKR7_A0A091VKR7_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JRJ8_A0A091JRJ8_EGRGA_188379 and tr_A0A093HKK8_A0A093HKK8_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091JRJ8_A0A091JRJ8_EGRGA_188379 and tr_A0A091VTF3_A0A091VTF3_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091JRJ8_A0A091JRJ8_EGRGA_188379 and tr_A0A0A0AL22_A0A0A0AL22_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A194R8N7_A0A194R8N7_PAPMA_76193 and tr_A0A194PPF9_A0A194PPF9_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A2I0MQ21_A0A2I0MQ21_COLLI_8932 and tr_A0A1V4KAN3_A0A1V4KAN3_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0RV22_A0A0V0RV22_9BILA_6336 and tr_A0A0V1CXA9_A0A0V1CXA9_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0RV22_A0A0V0RV22_9BILA_6336 and tr_A0A0V0VWP7_A0A0V0VWP7_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0RV22_A0A0V0RV22_9BILA_6336 and tr_A0A0V0U539_A0A0V0U539_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1LF44_A0A0V1LF44_9BILA_6335 and tr_A0A0V1AAB6_A0A0V1AAB6_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1LF44_A0A0V1LF44_9BILA_6335 and tr_A0A0V1PHM5_A0A0V1PHM5_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1M6H9_A0A0V1M6H9_9BILA_268474 and tr_A0A0V1HW26_A0A0V1HW26_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0V1MMM9_A0A0V1MMM9_9BILA_268474 and tr_A0A0V1HUS0_A0A0V1HUS0_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A151XBB6_A0A151XBB6_9HYME_64791 and tr_A0A151J2D9_A0A151J2D9_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A151XBB6_A0A151XBB6_9HYME_64791 and tr_A0A195F385_A0A195F385_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A1S3JV58_A0A1S3JV58_LINUN_7574 and tr_A0A1S3JV62_A0A1S3JV62_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3JV58_A0A1S3JV58_LINUN_7574 and tr_A0A1S3JV95_A0A1S3JV95_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3JV58_A0A1S3JV58_LINUN_7574 and tr_A0A1S3JV97_A0A1S3JV97_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3JV58_A0A1S3JV58_LINUN_7574 and tr_A0A1S3JVF2_A0A1S3JVF2_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3JV58_A0A1S3JV58_LINUN_7574 and tr_A0A1S3JW34_A0A1S3JW34_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3JV58_A0A1S3JV58_LINUN_7574 and tr_A0A1S3JW59_A0A1S3JW59_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3R664_A0A1S3R664_SALSA_8030 and tr_A0A060VUS1_A0A060VUS1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1I7UMW1_A0A1I7UMW1_9PELO_1561998 and tr_A0A1I7UMW2_A0A1I7UMW2_9PELO_1561998 are exactly identical! WARNING: Sequences tr_A0A226MT22_A0A226MT22_CALSU_9009 and tr_A0A226PNJ8_A0A226PNJ8_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0PR40_A0A2D0PR40_ICTPU_7998 and tr_A0A2D0PTT9_A0A2D0PTT9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0R7D9_A0A2D0R7D9_ICTPU_7998 and tr_A0A2D0R7E3_A0A2D0R7E3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RMQ3_A0A2D0RMQ3_ICTPU_7998 and tr_A0A2D0RMQ6_A0A2D0RMQ6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RMQ3_A0A2D0RMQ3_ICTPU_7998 and tr_A0A2D0RMQ7_A0A2D0RMQ7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RMQ3_A0A2D0RMQ3_ICTPU_7998 and tr_A0A2D0RMQ8_A0A2D0RMQ8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RMQ3_A0A2D0RMQ3_ICTPU_7998 and tr_A0A2D0RNQ9_A0A2D0RNQ9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RMQ3_A0A2D0RMQ3_ICTPU_7998 and tr_A0A2D0RNR4_A0A2D0RNR4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RMQ3_A0A2D0RMQ3_ICTPU_7998 and tr_A0A2D0RPB9_A0A2D0RPB9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SRV8_A0A2D0SRV8_ICTPU_7998 and tr_A0A2D0SRW1_A0A2D0SRW1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SRV8_A0A2D0SRV8_ICTPU_7998 and tr_A0A2D0SRW3_A0A2D0SRW3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SRV8_A0A2D0SRV8_ICTPU_7998 and tr_A0A2D0SSF8_A0A2D0SSF8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SRV8_A0A2D0SRV8_ICTPU_7998 and tr_A0A2D0SSZ9_A0A2D0SSZ9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5P066_A0A2K5P066_CERAT_9531 and tr_A0A2K5ZSQ5_A0A2K5ZSQ5_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4CIW0_A0A2U4CIW0_TURTR_9739 and tr_A0A2Y9ENU4_A0A2Y9ENU4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4CPY9_A0A2U4CPY9_TURTR_9739 and tr_A0A2Y9NFK5_A0A2Y9NFK5_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3ZG98_A0A2U3ZG98_ODORO_9708 and tr_A0A2U3Z3T6_A0A2U3Z3T6_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 287 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y5S2/3_mltree/Q9Y5S2.raxml.reduced.phy Alignment comprises 1 partitions and 304 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 304 / 304 Gaps: 3.32 % Invariant sites: 1.97 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y5S2/3_mltree/Q9Y5S2.raxml.rba Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 974 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 304 / 24320 [00:00:00] Data distribution: max. searches per worker: 4 Starting ML tree search with 20 distinct starting trees [00:00:00 -357456.346261] Initial branch length optimization [00:00:06 -291170.021743] Model parameter optimization (eps = 10.000000) [00:00:53 -289639.611226] AUTODETECT spr round 1 (radius: 5) [00:03:56 -165086.993414] AUTODETECT spr round 2 (radius: 10) [00:06:55 -108044.561015] AUTODETECT spr round 3 (radius: 15) [00:10:13 -86874.069292] AUTODETECT spr round 4 (radius: 20) [00:14:12 -70730.228854] AUTODETECT spr round 5 (radius: 25) [00:18:16 -65616.286091] SPR radius for FAST iterations: 25 (autodetect) [00:18:16 -65616.286091] Model parameter optimization (eps = 3.000000) [00:18:42 -65566.000874] FAST spr round 1 (radius: 25) [00:21:31 -55961.768048] FAST spr round 2 (radius: 25) [00:23:43 -54834.947047] FAST spr round 3 (radius: 25) [00:25:46 -54707.188159] FAST spr round 4 (radius: 25) [00:27:33 -54700.788845] FAST spr round 5 (radius: 25) [00:29:17 -54671.009668] FAST spr round 6 (radius: 25) [00:30:57 -54670.205886] FAST spr round 7 (radius: 25) [00:32:36 -54670.205776] Model parameter optimization (eps = 1.000000) [00:32:52 -54667.208663] SLOW spr round 1 (radius: 5) [00:35:00 -54657.555933] SLOW spr round 2 (radius: 5) [00:37:10 -54656.013546] SLOW spr round 3 (radius: 5) [00:39:14 -54655.369428] SLOW spr round 4 (radius: 5) [00:41:17 -54655.369037] SLOW spr round 5 (radius: 10) [00:43:31 -54655.356396] SLOW spr round 6 (radius: 15) [00:47:05 -54655.356362] SLOW spr round 7 (radius: 20) [00:52:09 -54655.356347] SLOW spr round 8 (radius: 25) [00:52:54] [worker #1] ML tree search #2, logLikelihood: -54648.070271 [00:59:18 -54655.356340] Model parameter optimization (eps = 0.100000) [00:59:26] [worker #0] ML tree search #1, logLikelihood: -54655.164649 [00:59:27 -357966.854156] Initial branch length optimization [00:59:32 -292070.849760] Model parameter optimization (eps = 10.000000) [01:00:34 -290587.110046] AUTODETECT spr round 1 (radius: 5) [01:03:28] [worker #4] ML tree search #5, logLikelihood: -54649.958001 [01:03:40 -166808.184937] AUTODETECT spr round 2 (radius: 10) [01:06:45 -105195.877893] AUTODETECT spr round 3 (radius: 15) [01:06:58] [worker #2] ML tree search #3, logLikelihood: -54668.069801 [01:09:58 -77591.843074] AUTODETECT spr round 4 (radius: 20) [01:14:07 -70541.564986] AUTODETECT spr round 5 (radius: 25) [01:17:21] [worker #3] ML tree search #4, logLikelihood: -54656.484337 [01:18:35 -67910.312340] SPR radius for FAST iterations: 25 (autodetect) [01:18:35 -67910.312340] Model parameter optimization (eps = 3.000000) [01:19:00 -67840.802760] FAST spr round 1 (radius: 25) [01:21:54 -56927.688833] FAST spr round 2 (radius: 25) [01:24:07 -55497.858087] FAST spr round 3 (radius: 25) [01:26:07 -54935.948148] FAST spr round 4 (radius: 25) [01:28:00 -54677.281498] FAST spr round 5 (radius: 25) [01:29:44 -54673.501612] FAST spr round 6 (radius: 25) [01:31:25 -54672.792053] FAST spr round 7 (radius: 25) [01:33:06 -54672.792023] Model parameter optimization (eps = 1.000000) [01:33:23 -54666.419457] SLOW spr round 1 (radius: 5) [01:35:39 -54655.302507] SLOW spr round 2 (radius: 5) [01:37:53 -54655.026454] SLOW spr round 3 (radius: 5) [01:40:06 -54655.019398] SLOW spr round 4 (radius: 10) [01:42:23 -54655.019290] SLOW spr round 5 (radius: 15) [01:45:50 -54655.019196] SLOW spr round 6 (radius: 20) [01:50:45 -54655.019108] SLOW spr round 7 (radius: 25) [01:51:54] [worker #1] ML tree search #7, logLikelihood: -54661.562241 [01:57:40 -54653.269756] SLOW spr round 8 (radius: 5) [02:00:51 -54650.480449] SLOW spr round 9 (radius: 5) [02:03:38 -54648.736249] SLOW spr round 10 (radius: 5) [02:06:03 -54648.736205] SLOW spr round 11 (radius: 10) [02:07:39] [worker #4] ML tree search #10, logLikelihood: -54664.550299 [02:08:26 -54648.736195] SLOW spr round 12 (radius: 15) [02:11:50 -54648.736193] SLOW spr round 13 (radius: 20) [02:16:50 -54648.736193] SLOW spr round 14 (radius: 25) [02:21:37] [worker #3] ML tree search #9, logLikelihood: -54657.526585 [02:23:42 -54648.736193] Model parameter optimization (eps = 0.100000) [02:23:48] [worker #0] ML tree search #6, logLikelihood: -54648.693655 [02:23:48 -358895.522235] Initial branch length optimization [02:23:53 -294697.179888] Model parameter optimization (eps = 10.000000) [02:24:37 -293069.857132] AUTODETECT spr round 1 (radius: 5) [02:27:45 -156108.699399] AUTODETECT spr round 2 (radius: 10) [02:30:47 -106891.514375] AUTODETECT spr round 3 (radius: 15) [02:34:07 -86112.052971] AUTODETECT spr round 4 (radius: 20) [02:38:00 -68327.173990] AUTODETECT spr round 5 (radius: 25) [02:41:12] [worker #2] ML tree search #8, logLikelihood: -54665.953817 [02:41:50 -64953.232114] SPR radius for FAST iterations: 25 (autodetect) [02:41:50 -64953.232114] Model parameter optimization (eps = 3.000000) [02:42:17 -64890.055686] FAST spr round 1 (radius: 25) [02:45:06 -56057.185726] FAST spr round 2 (radius: 25) [02:47:25 -54747.348215] FAST spr round 3 (radius: 25) [02:49:29 -54686.802929] FAST spr round 4 (radius: 25) [02:51:20 -54676.541579] FAST spr round 5 (radius: 25) [02:53:03 -54676.541402] Model parameter optimization (eps = 1.000000) [02:53:22 -54673.688586] SLOW spr round 1 (radius: 5) [02:55:34 -54663.427621] SLOW spr round 2 (radius: 5) [02:57:50 -54660.930976] SLOW spr round 3 (radius: 5) [03:00:06 -54660.929463] SLOW spr round 4 (radius: 10) [03:02:31 -54660.258823] SLOW spr round 5 (radius: 5) [03:05:25 -54660.258515] SLOW spr round 6 (radius: 10) [03:08:02 -54660.230971] SLOW spr round 7 (radius: 15) [03:11:15 -54659.786631] SLOW spr round 8 (radius: 5) [03:14:23 -54655.264180] SLOW spr round 9 (radius: 5) [03:17:01 -54655.264042] SLOW spr round 10 (radius: 10) [03:19:32 -54655.263923] SLOW spr round 11 (radius: 15) [03:22:46 -54655.263855] SLOW spr round 12 (radius: 20) [03:26:14] [worker #1] ML tree search #12, logLikelihood: -54726.492075 [03:27:06 -54655.263793] SLOW spr round 13 (radius: 25) [03:32:55 -54654.321468] SLOW spr round 14 (radius: 5) [03:36:03 -54648.790654] SLOW spr round 15 (radius: 5) [03:38:44 -54648.789756] SLOW spr round 16 (radius: 10) [03:41:13 -54648.789550] SLOW spr round 17 (radius: 15) [03:44:26 -54648.789446] SLOW spr round 18 (radius: 20) [03:48:54 -54648.789369] SLOW spr round 19 (radius: 25) [03:52:29] [worker #2] ML tree search #13, logLikelihood: -54659.907507 [03:55:00 -54648.706349] Model parameter optimization (eps = 0.100000) [03:55:05] [worker #0] ML tree search #11, logLikelihood: -54648.683375 [03:55:05 -356001.118271] Initial branch length optimization [03:55:11 -290504.356451] Model parameter optimization (eps = 10.000000) [03:55:56 -288940.311879] AUTODETECT spr round 1 (radius: 5) [03:58:56 -164339.120475] AUTODETECT spr round 2 (radius: 10) [04:02:00 -104188.081190] AUTODETECT spr round 3 (radius: 15) [04:05:21 -84410.744758] AUTODETECT spr round 4 (radius: 20) [04:09:16 -73926.206737] AUTODETECT spr round 5 (radius: 25) [04:13:36 -69750.753869] SPR radius for FAST iterations: 25 (autodetect) [04:13:36 -69750.753869] Model parameter optimization (eps = 3.000000) [04:14:05 -69713.603126] FAST spr round 1 (radius: 25) [04:15:03] [worker #3] ML tree search #14, logLikelihood: -54652.676010 [04:17:00 -56641.004120] FAST spr round 2 (radius: 25) [04:19:23 -54904.387571] FAST spr round 3 (radius: 25) [04:21:25 -54702.265063] FAST spr round 4 (radius: 25) [04:23:14 -54695.355270] FAST spr round 5 (radius: 25) [04:24:55 -54695.354934] Model parameter optimization (eps = 1.000000) [04:25:10 -54690.120416] SLOW spr round 1 (radius: 5) [04:27:18 -54676.657866] SLOW spr round 2 (radius: 5) [04:29:26 -54674.886891] SLOW spr round 3 (radius: 5) [04:31:26] [worker #4] ML tree search #15, logLikelihood: -54647.159392 [04:31:28 -54674.886881] SLOW spr round 4 (radius: 10) [04:33:42 -54670.771315] SLOW spr round 5 (radius: 5) [04:36:35 -54668.276482] SLOW spr round 6 (radius: 5) [04:39:05 -54666.876022] SLOW spr round 7 (radius: 5) [04:41:26 -54666.876006] SLOW spr round 8 (radius: 10) [04:44:09 -54666.875996] SLOW spr round 9 (radius: 15) [04:48:11 -54666.875942] SLOW spr round 10 (radius: 20) [04:49:23] [worker #1] ML tree search #17, logLikelihood: -54734.589015 [04:53:55 -54666.875932] SLOW spr round 11 (radius: 25) [05:01:15 -54666.875922] Model parameter optimization (eps = 0.100000) [05:01:29] [worker #0] ML tree search #16, logLikelihood: -54666.845433 [05:21:37] [worker #3] ML tree search #19, logLikelihood: -54653.167637 [05:28:42] [worker #4] ML tree search #20, logLikelihood: -54682.775594 [05:28:51] [worker #2] ML tree search #18, logLikelihood: -54659.462778 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.242486,0.351359) (0.345913,0.438134) (0.244803,1.180385) (0.166798,2.843458) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -54647.159392 AIC score: 113196.318783 / AICc score: 7729900.318783 / BIC score: 120448.239829 Free parameters (model + branch lengths): 1951 WARNING: Number of free parameters (K=1951) is larger than alignment size (n=304). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 384 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y5S2/3_mltree/Q9Y5S2.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y5S2/3_mltree/Q9Y5S2.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y5S2/3_mltree/Q9Y5S2.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y5S2/3_mltree/Q9Y5S2.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y5S2/3_mltree/Q9Y5S2.raxml.log Analysis started: 04-Jul-2021 14:42:51 / finished: 04-Jul-2021 20:11:43 Elapsed time: 19732.160 seconds Consumed energy: 1633.700 Wh (= 8 km in an electric car, or 41 km with an e-scooter!)