RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 05-Jul-2021 23:26:55 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5R5/2_msa/Q9Y5R5_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5R5/3_mltree/Q9Y5R5 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5R5/2_msa/Q9Y5R5_trimmed_msa.fasta [00:00:00] Loaded alignment with 870 taxa and 30 sites WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_B4R069_B4R069_DROSI_7240 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_E2AFC8_E2AFC8_CAMFO_104421 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_Q9VAI8_Q9VAI8_DROME_7227 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_B4JYL3_B4JYL3_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_B4HZC6_B4HZC6_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_Q29BU6_Q29BU6_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A088A597_A0A088A597_APIME_7460 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_K1RAP5_K1RAP5_CRAGI_29159 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_Q7QFE0_Q7QFE0_ANOGA_7165 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A212EM32_A0A212EM32_DANPL_278856 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_F4WSP6_F4WSP6_ACREC_103372 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_B4NBJ8_B4NBJ8_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_B3MTG8_B3MTG8_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_E2BND7_E2BND7_HARSA_610380 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_B4GPM2_B4GPM2_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_B4M5R8_B4M5R8_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_E0VFK1_E0VFK1_PEDHC_121224 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_B4K600_B4K600_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A067RK21_A0A067RK21_ZOONE_136037 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_V4CEX2_V4CEX2_LOTGI_225164 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A084VLH7_A0A084VLH7_ANOSI_74873 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A0L7KU07_A0A0L7KU07_9NEOP_104452 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A026WDN9_A0A026WDN9_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A0M9AD00_A0A0M9AD00_9HYME_166423 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A0N1PIK5_A0A0N1PIK5_PAPMA_76193 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A194QEA6_A0A194QEA6_PAPXU_66420 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A0L7QX91_A0A0L7QX91_9HYME_597456 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A151XHF1_A0A151XHF1_9HYME_64791 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A154NZ16_A0A154NZ16_9HYME_178035 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A195DIZ4_A0A195DIZ4_9HYME_471704 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A151I158_A0A151I158_9HYME_520822 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A195FI02_A0A195FI02_9HYME_34720 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A195C0L6_A0A195C0L6_9HYME_456900 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A1S4ENN7_A0A1S4ENN7_DIACI_121845 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A1S3KAM7_A0A1S3KAM7_LINUN_7574 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A0M4F685_A0A0M4F685_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A1W4UCS3_A0A1W4UCS3_DROFC_30025 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A2A4K116_A0A2A4K116_HELVI_7102 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A2J7R3K2_A0A2J7R3K2_9NEOP_105785 are exactly identical! WARNING: Sequences tr_B4NUY2_B4NUY2_DROSI_7240 and tr_A0A210PR55_A0A210PR55_MIZYE_6573 are exactly identical! WARNING: Sequences tr_B4R0C0_B4R0C0_DROSI_7240 and sp_P23023_DSX_DROME_7227 are exactly identical! WARNING: Sequences tr_B4R0C0_B4R0C0_DROSI_7240 and tr_B4JSR6_B4JSR6_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4R0C0_B4R0C0_DROSI_7240 and tr_B4I4Z4_B4I4Z4_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4R0C0_B4R0C0_DROSI_7240 and tr_A0A1W4VLK3_A0A1W4VLK3_DROFC_30025 are exactly identical! WARNING: Sequences tr_B4R152_B4R152_DROSI_7240 and tr_Q9VDF1_Q9VDF1_DROME_7227 are exactly identical! WARNING: Sequences tr_B4R152_B4R152_DROSI_7240 and tr_B4IKL6_B4IKL6_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4R152_B4R152_DROSI_7240 and tr_Q293K3_Q293K3_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4R152_B4R152_DROSI_7240 and tr_B4GM05_B4GM05_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4R152_B4R152_DROSI_7240 and tr_A0A1W4VL24_A0A1W4VL24_DROFC_30025 are exactly identical! WARNING: Sequences tr_E9FVS4_E9FVS4_DAPPU_6669 and tr_A0A0P6CC91_A0A0P6CC91_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E9G633_E9G633_DAPPU_6669 and tr_J9JUU4_J9JUU4_ACYPI_7029 are exactly identical! WARNING: Sequences tr_E9G633_E9G633_DAPPU_6669 and tr_T1EKB7_T1EKB7_HELRO_6412 are exactly identical! WARNING: Sequences tr_E9G633_E9G633_DAPPU_6669 and tr_A0A162P2N1_A0A162P2N1_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E9G633_E9G633_DAPPU_6669 and tr_A0A1V9XPE7_A0A1V9XPE7_9ACAR_418985 are exactly identical! WARNING: Sequences tr_E9GN51_E9GN51_DAPPU_6669 and tr_A0A0P5N3P8_A0A0P5N3P8_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E9GN52_E9GN52_DAPPU_6669 and tr_E9RFT3_E9RFT3_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E9H0C6_E9H0C6_DAPPU_6669 and tr_A0A0P6BFQ0_A0A0P6BFQ0_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E2A5G1_E2A5G1_CAMFO_104421 and tr_F4X7Z4_F4X7Z4_ACREC_103372 are exactly identical! WARNING: Sequences tr_E2A5G1_E2A5G1_CAMFO_104421 and tr_E2BTB7_E2BTB7_HARSA_610380 are exactly identical! WARNING: Sequences tr_E2A5G1_E2A5G1_CAMFO_104421 and tr_A0A026WR07_A0A026WR07_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E2A5G1_E2A5G1_CAMFO_104421 and tr_A0A0M9A6T2_A0A0M9A6T2_9HYME_166423 are exactly identical! WARNING: Sequences tr_E2A5G1_E2A5G1_CAMFO_104421 and tr_A0A0L7QMC7_A0A0L7QMC7_9HYME_597456 are exactly identical! WARNING: Sequences tr_E2A5G1_E2A5G1_CAMFO_104421 and tr_A0A151WN43_A0A151WN43_9HYME_64791 are exactly identical! WARNING: Sequences tr_E2A5G1_E2A5G1_CAMFO_104421 and tr_A0A151I230_A0A151I230_9HYME_520822 are exactly identical! WARNING: Sequences tr_E2A5G1_E2A5G1_CAMFO_104421 and tr_A0A151IEX4_A0A151IEX4_9HYME_456900 are exactly identical! WARNING: Sequences tr_E2ATY1_E2ATY1_CAMFO_104421 and tr_A0A087ZY75_A0A087ZY75_APIME_7460 are exactly identical! WARNING: Sequences tr_E2ATY1_E2ATY1_CAMFO_104421 and tr_E2C225_E2C225_HARSA_610380 are exactly identical! WARNING: Sequences tr_E2ATY1_E2ATY1_CAMFO_104421 and tr_A0A026W1V3_A0A026W1V3_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E2ATY1_E2ATY1_CAMFO_104421 and tr_A0A0N0U616_A0A0N0U616_9HYME_166423 are exactly identical! WARNING: Sequences tr_E2ATY1_E2ATY1_CAMFO_104421 and tr_A0A0L7R0J6_A0A0L7R0J6_9HYME_597456 are exactly identical! WARNING: Sequences tr_E2ATY1_E2ATY1_CAMFO_104421 and tr_A0A151XGZ8_A0A151XGZ8_9HYME_64791 are exactly identical! WARNING: Sequences tr_E2ATY1_E2ATY1_CAMFO_104421 and tr_A0A154PRQ0_A0A154PRQ0_9HYME_178035 are exactly identical! WARNING: Sequences tr_E2ATY1_E2ATY1_CAMFO_104421 and tr_A0A195DM64_A0A195DM64_9HYME_471704 are exactly identical! WARNING: Sequences tr_E2ATY1_E2ATY1_CAMFO_104421 and tr_A0A151I304_A0A151I304_9HYME_520822 are exactly identical! WARNING: Sequences tr_E2ATY1_E2ATY1_CAMFO_104421 and tr_A0A151K058_A0A151K058_9HYME_34720 are exactly identical! WARNING: Sequences tr_E2ATY1_E2ATY1_CAMFO_104421 and tr_A0A151IG21_A0A151IG21_9HYME_456900 are exactly identical! WARNING: Sequences tr_E2ATY1_E2ATY1_CAMFO_104421 and tr_A0A2A3EGJ0_A0A2A3EGJ0_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A2R8QDA7_A0A2R8QDA7_DANRE_7955 and tr_A0A0P7V7X3_A0A0P7V7X3_9TELE_113540 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_E1C2G0_E1C2G0_CHICK_9031 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and sp_Q80WT2_DMRT3_MOUSE_10090 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A3B3HRX6_A0A3B3HRX6_ORYLA_8090 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_G1RB36_G1RB36_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_G3RBV5_G3RBV5_GORGO_9595 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_G1KAM6_G1KAM6_ANOCA_28377 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_G1SJF0_G1SJF0_RABIT_9986 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_E2RLR2_E2RLR2_CANLF_9615 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_H2QWY7_H2QWY7_PANTR_9598 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_F6WRN0_F6WRN0_ORNAN_9258 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_F7GL20_F7GL20_MONDO_13616 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and sp_F6W2R2_DMRT3_HORSE_9796 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and sp_D4A218_DMRT3_RAT_10116 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_M4AMD3_M4AMD3_XIPMA_8083 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_I3K9Q2_I3K9Q2_ORENI_8128 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_I3NAB5_I3NAB5_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_H0XYW4_H0XYW4_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_H2UT30_H2UT30_TAKRU_31033 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and sp_Q90WM5_DMRT3_TAKRU_31033 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_H0V6L1_H0V6L1_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and sp_Q9NQL9_DMRT3_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_Q4RTT8_Q4RTT8_TETNG_99883 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_G3PNF9_G3PNF9_GASAC_69293 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_F6TAJ8_F6TAJ8_XENTR_8364 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A2R8PLB9_A0A2R8PLB9_CALJA_9483 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A287AUL2_A0A287AUL2_PIG_9823 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_H3AVI9_H3AVI9_LATCH_7897 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_F1MZ24_F1MZ24_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_L5K6P9_L5K6P9_PTEAL_9402 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A2I2U3E9_A0A2I2U3E9_FELCA_9685 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_W5N0E8_W5N0E8_LEPOC_7918 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A087X6B0_A0A087X6B0_POEFO_48698 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A091D614_A0A091D614_FUKDA_885580 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A0D9R8E5_A0A0D9R8E5_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A0Q3PBL6_A0A0Q3PBL6_AMAAE_12930 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A1S3A807_A0A1S3A807_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A1S3FCV6_A0A1S3FCV6_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A1S3M7W9_A0A1S3M7W9_SALSA_8030 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A1L8HY78_A0A1L8HY78_XENLA_8355 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A1U7QD89_A0A1U7QD89_MESAU_10036 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A060YBC6_A0A060YBC6_ONCMY_8022 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A218VAG1_A0A218VAG1_9PASE_299123 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A226MR48_A0A226MR48_CALSU_9009 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A226PN36_A0A226PN36_COLVI_9014 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A2K5NW57_A0A2K5NW57_CERAT_9531 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A2K6CHU9_A0A2K6CHU9_MACNE_9545 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A2U4B909_A0A2U4B909_TURTR_9739 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A2U3X211_A0A2U3X211_ODORO_9708 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A2U9BVF1_A0A2U9BVF1_SCOMX_52904 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A2Y9K517_A0A2Y9K517_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A2Y9NIM4_A0A2Y9NIM4_DELLE_9749 are exactly identical! WARNING: Sequences sp_P83758_DMT3A_DANRE_7955 and tr_A0A2Y9FRK5_A0A2Y9FRK5_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_A0A3B3HNW6_A0A3B3HNW6_ORYLA_8090 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and sp_Q76L87_DMTA2_ORYLA_8090 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and sp_Q2I327_DMTA2_XIPMA_8083 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_I3J267_I3J267_ORENI_8128 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and sp_Q6YHU8_DMTA2_ORENI_8128 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_H2RVP0_H2RVP0_TAKRU_31033 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and sp_Q4AE28_DMTA2_TAKRU_31033 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_G3PAW6_G3PAW6_GASAC_69293 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and sp_A4QNP7_DMTA2_XENTR_8364 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_E3M4V7_E3M4V7_CAERE_31234 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_U3JS22_U3JS22_FICAL_59894 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_A0A3B1IDQ1_A0A3B1IDQ1_ASTMX_7994 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_W5MST1_W5MST1_LEPOC_7918 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_A0A087XGB3_A0A087XGB3_POEFO_48698 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_A0A0P7XTP5_A0A0P7XTP5_9TELE_113540 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_A0A0K0CYR1_A0A0K0CYR1_ANGCA_6313 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_A0A093H381_A0A093H381_DRYPU_118200 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_A0A1S3PBS0_A0A1S3PBS0_SALSA_8030 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_A0A1S3T6A0_A0A1S3T6A0_SALSA_8030 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_A0A1L8GMF5_A0A1L8GMF5_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_B7ZRH2_B7ZRH2_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_A0A1V4KCX9_A0A1V4KCX9_PATFA_372326 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_A0A2I4CNQ9_A0A2I4CNQ9_9TELE_52670 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_A0A060WCA5_A0A060WCA5_ONCMY_8022 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_A0A060WDZ7_A0A060WDZ7_ONCMY_8022 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_A0A226PHD4_A0A226PHD4_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_A0A261CGM9_A0A261CGM9_9PELO_1503980 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_A0A2D0QZX8_A0A2D0QZX8_ICTPU_7998 are exactly identical! WARNING: Sequences sp_Q5UU75_DMTA2_DANRE_7955 and tr_A0A2U9C7W8_A0A2U9C7W8_SCOMX_52904 are exactly identical! WARNING: Sequences sp_Q71MM5_DMRT1_DANRE_7955 and tr_A0A1S3PKX5_A0A1S3PKX5_SALSA_8030 are exactly identical! WARNING: Sequences sp_Q71MM5_DMRT1_DANRE_7955 and tr_A0A060YYF6_A0A060YYF6_ONCMY_8022 are exactly identical! WARNING: Sequences sp_Q71MM5_DMRT1_DANRE_7955 and tr_A0A2D0PPW7_A0A2D0PPW7_ICTPU_7998 are exactly identical! WARNING: Sequences sp_Q71MM5_DMRT1_DANRE_7955 and tr_A0A2D0PRI0_A0A2D0PRI0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_R4GM47_R4GM47_CHICK_9031 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and sp_Q8BG36_DMRT2_MOUSE_10090 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A3B3H6C0_A0A3B3H6C0_ORYLA_8090 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_G1RB56_G1RB56_NOMLE_61853 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_G3IM99_G3IM99_CRIGR_10029 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_G3SDP2_G3SDP2_GORGO_9595 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A2J8XHG5_A0A2J8XHG5_PONAB_9601 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_G1KAN4_G1KAN4_ANOCA_28377 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_G1SJF3_G1SJF3_RABIT_9986 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A2J8JH20_A0A2J8JH20_PANTR_9598 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_F7GCC2_F7GCC2_MONDO_13616 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_W5PUQ9_W5PUQ9_SHEEP_9940 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_D4A098_D4A098_RAT_10116 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_Q8QGP4_Q8QGP4_XIPMA_8083 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_I3K9Q0_I3K9Q0_ORENI_8128 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_I3MYT4_I3MYT4_ICTTR_43179 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_H0WJT3_H0WJT3_OTOGA_30611 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_Q90WM4_Q90WM4_TAKRU_31033 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_H0VCE2_H0VCE2_CAVPO_10141 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and sp_Q9Y5R5_DMRT2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_F6VI53_F6VI53_MACMU_9544 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_G5BXE7_G5BXE7_HETGA_10181 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_H3DDX3_H3DDX3_TETNG_99883 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_G3PNF6_G3PNF6_GASAC_69293 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_G3W5W7_G3W5W7_SARHA_9305 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_H0Z523_H0Z523_TAEGU_59729 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_F6RFX2_F6RFX2_XENTR_8364 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_F6SFJ6_F6SFJ6_CALJA_9483 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_F1SJG4_F1SJG4_PIG_9823 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_H3ATU6_H3ATU6_LATCH_7897 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_G7PSG4_G7PSG4_MACFA_9541 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_E1BC71_E1BC71_BOVIN_9913 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_L5K8E5_L5K8E5_PTEAL_9402 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A337S6E2_A0A337S6E2_FELCA_9685 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_U3K735_U3K735_FICAL_59894 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A3B1IQY8_A0A3B1IQY8_ASTMX_7994 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_W5N0F8_W5N0F8_LEPOC_7918 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A087X6H1_A0A087X6H1_POEFO_48698 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A096P1N7_A0A096P1N7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A0D9R8F3_A0A0D9R8F3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A0Q3NZC5_A0A0Q3NZC5_AMAAE_12930 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A2I0LXG4_A0A2I0LXG4_COLLI_8932 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A1S3A861_A0A1S3A861_ERIEU_9365 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A1S3KJR9_A0A1S3KJR9_SALSA_8030 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A1S3M7A4_A0A1S3M7A4_SALSA_8030 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A1S3PLN7_A0A1S3PLN7_SALSA_8030 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A1L8HP54_A0A1L8HP54_XENLA_8355 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A1L8HY88_A0A1L8HY88_XENLA_8355 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A1U7QB01_A0A1U7QB01_MESAU_10036 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A1V4L133_A0A1V4L133_PATFA_372326 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A2I4AMS0_A0A2I4AMS0_9TELE_52670 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A2I4DAK2_A0A2I4DAK2_9TELE_52670 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A060YNV6_A0A060YNV6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A060YQJ6_A0A060YQJ6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A060YTX7_A0A060YTX7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A218V9S7_A0A218V9S7_9PASE_299123 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A226MQY4_A0A226MQY4_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A226PKZ7_A0A226PKZ7_COLVI_9014 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A2D0PN87_A0A2D0PN87_ICTPU_7998 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A2K5LYK0_A0A2K5LYK0_CERAT_9531 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A2K6C8P5_A0A2K6C8P5_MACNE_9545 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A2K5YF58_A0A2K5YF58_MANLE_9568 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A2U4BAS6_A0A2U4BAS6_TURTR_9739 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A2U3X1Y3_A0A2U3X1Y3_ODORO_9708 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A2U3YS13_A0A2U3YS13_LEPWE_9713 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A2Y9K587_A0A2Y9K587_ENHLU_391180 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A2Y9N807_A0A2Y9N807_DELLE_9749 are exactly identical! WARNING: Sequences tr_Q9W7K3_Q9W7K3_DANRE_7955 and tr_A0A2Y9SVF2_A0A2Y9SVF2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and sp_Q9PTQ7_DMRT1_CHICK_9031 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and sp_Q9QZ59_DMRT1_MOUSE_10090 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_M3Y1G6_M3Y1G6_MUSPF_9669 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_G1RB29_G1RB29_NOMLE_61853 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_G1PIA3_G1PIA3_MYOLU_59463 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_G3S0W9_G3S0W9_GORGO_9595 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_H2PSA2_H2PSA2_PONAB_9601 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_G1KAL9_G1KAL9_ANOCA_28377 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_G1SM29_G1SM29_RABIT_9986 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_E2RLR7_E2RLR7_CANLF_9615 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_H2QWY6_H2QWY6_PANTR_9598 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_Q6KB51_Q6KB51_ORNAN_9258 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_F6Z0D5_F6Z0D5_MONDO_13616 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_F6VIR9_F6VIR9_HORSE_9796 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_Q925A6_Q925A6_RAT_10116 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_I3MF31_I3MF31_ICTTR_43179 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_H0WJS9_H0WJS9_OTOGA_30611 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_H0V6K9_H0V6K9_CAVPO_10141 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and sp_Q9Y5R6_DMRT1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_A0A1D5QIS6_A0A1D5QIS6_MACMU_9544 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_K7G2S5_K7G2S5_PELSI_13735 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_G3VXS0_G3VXS0_SARHA_9305 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and sp_P85119_DMRT1_XENTR_8364 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_F1SJG1_F1SJG1_PIG_9823 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and sp_Q9TT01_DMRT1_PIG_9823 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_H3AZ59_H3AZ59_LATCH_7897 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_G1LJ92_G1LJ92_AILME_9646 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and sp_C0LZJ1_DMRT1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_H9KUV0_H9KUV0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_L5K961_L5K961_PTEAL_9402 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_M3W5Y1_M3W5Y1_FELCA_9685 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_A0A096P1N9_A0A096P1N9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_A0A151M8I3_A0A151M8I3_ALLMI_8496 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_A0A1L8HP18_A0A1L8HP18_XENLA_8355 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_A0A1U7U6A6_A0A1U7U6A6_TARSY_1868482 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_A0A1U7RYU6_A0A1U7RYU6_ALLSI_38654 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_A0A1U7Q604_A0A1U7Q604_MESAU_10036 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_A0A2K5NYR5_A0A2K5NYR5_CERAT_9531 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_A0A2K6CMU4_A0A2K6CMU4_MACNE_9545 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_A0A2K5YZ02_A0A2K5YZ02_MANLE_9568 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_A0A2R9BLJ2_A0A2R9BLJ2_PANPA_9597 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_A0A2U3X1X7_A0A2U3X1X7_ODORO_9708 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_A0A2U3Z453_A0A2U3Z453_LEPWE_9713 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_A0A2Y9DF47_A0A2Y9DF47_TRIMA_127582 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_A0A2Y9KGM2_A0A2Y9KGM2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_J9PBQ2_J9PBQ2_CHICK_9031 and tr_A0A2Y9SZB1_A0A2Y9SZB1_PHYCD_9755 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_M3Y700_M3Y700_MUSPF_9669 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A2I2YEN6_A0A2I2YEN6_GORGO_9595 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_G1SEJ7_G1SEJ7_RABIT_9986 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A2J8NIJ8_A0A2J8NIJ8_PANTR_9598 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_F7CJ78_F7CJ78_MONDO_13616 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_W5P2D3_W5P2D3_SHEEP_9940 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_D4A0L2_D4A0L2_RAT_10116 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_I3N5G3_I3N5G3_ICTTR_43179 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_H0XLR4_H0XLR4_OTOGA_30611 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and sp_Q96SC8_DMTA2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_G5C4G3_G5C4G3_HETGA_10181 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_G3TQU3_G3TQU3_LOXAF_9785 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A2R8MD45_A0A2R8MD45_CALJA_9483 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_I3L9S3_I3L9S3_PIG_9823 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and sp_A6QQ94_DMTA2_BOVIN_9913 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A337S181_A0A337S181_FELCA_9685 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A2I3LQR4_A0A2I3LQR4_PAPAN_9555 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A0D9S7B6_A0A0D9S7B6_CHLSB_60711 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A1S3AKP4_A0A1S3AKP4_ERIEU_9365 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A1S3F7T6_A0A1S3F7T6_DIPOR_10020 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A1U7QEF2_A0A1U7QEF2_MESAU_10036 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A2K5MKV1_A0A2K5MKV1_CERAT_9531 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A2K6CQ64_A0A2K6CQ64_MACNE_9545 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A2K5XNF8_A0A2K5XNF8_MANLE_9568 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A2R9ATK5_A0A2R9ATK5_PANPA_9597 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A2U4BJJ4_A0A2U4BJJ4_TURTR_9739 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A2U3VXY1_A0A2U3VXY1_ODORO_9708 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A2U3XKS1_A0A2U3XKS1_LEPWE_9713 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A2Y9QHA4_A0A2Y9QHA4_TRIMA_127582 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A2Y9IXE1_A0A2Y9IXE1_ENHLU_391180 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A2Y9NN19_A0A2Y9NN19_DELLE_9749 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A2Y9SH22_A0A2Y9SH22_PHYCD_9755 are exactly identical! WARNING: Sequences sp_A2A9A2_DMTA2_MOUSE_10090 and tr_A0A383YPU3_A0A383YPU3_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_M3YX05_M3YX05_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_A0A2I3HFG5_A0A2I3HFG5_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_G1PMI0_G1PMI0_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_G3R135_G3R135_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_H2PS10_H2PS10_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_G1KU29_G1KU29_ANOCA_28377 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_G1SQ91_G1SQ91_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_F1P9K2_F1P9K2_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_A0A2I3RJY7_A0A2I3RJY7_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_F6SI73_F6SI73_ORNAN_9258 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_F7GJE2_F7GJE2_MONDO_13616 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_W5PYF8_W5PYF8_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_D3ZIZ0_D3ZIZ0_RAT_10116 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_H0X6C4_H0X6C4_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_A0A286XMF3_A0A286XMF3_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and sp_Q5VZB9_DMRTA_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_G3TC51_G3TC51_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_F1SNK8_F1SNK8_PIG_9823 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_G1LLX1_G1LLX1_AILME_9646 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_G7PS77_G7PS77_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_E1BAR8_E1BAR8_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_L5KXT8_L5KXT8_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_M3WL93_M3WL93_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_A0A2I3M8N3_A0A2I3M8N3_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_A0A0P7VIJ6_A0A0P7VIJ6_9TELE_113540 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_A0A1S3AD28_A0A1S3AD28_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_A0A1S3FJL5_A0A1S3FJL5_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_A0A3Q0DIH8_A0A3Q0DIH8_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_A0A2D0QFY8_A0A2D0QFY8_ICTPU_7998 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_A0A2K5MAE6_A0A2K5MAE6_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_A0A2K6BCI3_A0A2K6BCI3_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_A0A2R9AH32_A0A2R9AH32_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_A0A2U3V536_A0A2U3V536_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_A0A2U3WUH8_A0A2U3WUH8_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_A0A2U3YAF2_A0A2U3YAF2_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_A0A2Y9DFH1_A0A2Y9DFH1_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_A0A2Y9LCM5_A0A2Y9LCM5_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_A0A2Y9ET59_A0A2Y9ET59_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q8CFG4_DMRTA_MOUSE_10090 and tr_A0A383ZP43_A0A383ZP43_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_M3Y6Y7_M3Y6Y7_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_G3IMH0_G3IMH0_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_G3S9N9_G3S9N9_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_H2NYZ0_H2NYZ0_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_E2RAH1_E2RAH1_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_A0A2I3TS50_A0A2I3TS50_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_W5PEY6_W5PEY6_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_D3ZH91_D3ZH91_RAT_10116 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_I3M2D0_I3M2D0_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_H0X5Y4_H0X5Y4_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_H0UX33_H0UX33_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and sp_Q8IXT2_DMRTD_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_F6YWL8_F6YWL8_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_G5AZQ0_G5AZQ0_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_G3TRU8_G3TRU8_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_F7BFV6_F7BFV6_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_F1RGG0_F1RGG0_PIG_9823 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_G1LCQ1_G1LCQ1_AILME_9646 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_G7PXP8_G7PXP8_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_F1MKG3_F1MKG3_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and sp_Q32LE6_DMRTD_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_L5L861_L5L861_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_A0A2I3NEL5_A0A2I3NEL5_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_A0A091EE48_A0A091EE48_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_A0A0D9S107_A0A0D9S107_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_A0A1S3WNL4_A0A1S3WNL4_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_A0A1U7R6I2_A0A1U7R6I2_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_A0A2K5MWI4_A0A2K5MWI4_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_A0A2K6BPB6_A0A2K6BPB6_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_A0A2K5XQI0_A0A2K5XQI0_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_A0A2U3WHK0_A0A2U3WHK0_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_A0A2U3XKN0_A0A2U3XKN0_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_A0A2Y9E7Y2_A0A2Y9E7Y2_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_A0A2Y9IJR5_A0A2Y9IJR5_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_A0A2Y9TGE6_A0A2Y9TGE6_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_A0A384DM93_A0A384DM93_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q8CGW9_DMRTD_MOUSE_10090 and tr_A0A383YZ11_A0A383YZ11_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3Y4H8_M3Y4H8_MUSPF_9669 and tr_I3M997_I3M997_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3Y4H8_M3Y4H8_MUSPF_9669 and tr_H0XYP7_H0XYP7_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3Y4H8_M3Y4H8_MUSPF_9669 and tr_F1S768_F1S768_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Y4H8_M3Y4H8_MUSPF_9669 and tr_L5K6Q4_L5K6Q4_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3Y4H8_M3Y4H8_MUSPF_9669 and tr_A0A337SIL7_A0A337SIL7_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Y4H8_M3Y4H8_MUSPF_9669 and tr_A0A2U3VXY4_A0A2U3VXY4_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y4H8_M3Y4H8_MUSPF_9669 and tr_A0A2U3Y1Y2_A0A2U3Y1Y2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Y4H8_M3Y4H8_MUSPF_9669 and tr_A0A2Y9IT12_A0A2Y9IT12_ENHLU_391180 are exactly identical! WARNING: Sequences tr_Q9VYE0_Q9VYE0_DROME_7227 and tr_B4IGR7_B4IGR7_DROSE_7238 are exactly identical! WARNING: Sequences tr_Q9VYE0_Q9VYE0_DROME_7227 and tr_B3MXP2_B3MXP2_DROAN_7217 are exactly identical! WARNING: Sequences tr_Q9VYE0_Q9VYE0_DROME_7227 and tr_A0A1W4VKI2_A0A1W4VKI2_DROFC_30025 are exactly identical! WARNING: Sequences tr_A0A3B3HB59_A0A3B3HB59_ORYLA_8090 and tr_A0A3B5QWY0_A0A3B5QWY0_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A3B3HB59_A0A3B3HB59_ORYLA_8090 and tr_I3JQI6_I3JQI6_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B3HB59_A0A3B3HB59_ORYLA_8090 and tr_H2VDM4_H2VDM4_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A0A3B3HB59_A0A3B3HB59_ORYLA_8090 and tr_H3DL60_H3DL60_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A3B3HB59_A0A3B3HB59_ORYLA_8090 and tr_A0A087XKZ9_A0A087XKZ9_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B3HB59_A0A3B3HB59_ORYLA_8090 and tr_A0A2U9C6C2_A0A2U9C6C2_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H2LGU9_H2LGU9_ORYLA_8090 and tr_M4ADJ0_M4ADJ0_XIPMA_8083 are exactly identical! WARNING: Sequences tr_H2LGU9_H2LGU9_ORYLA_8090 and tr_I3JKX7_I3JKX7_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2LGU9_H2LGU9_ORYLA_8090 and tr_A0A3B5KNZ2_A0A3B5KNZ2_TAKRU_31033 are exactly identical! WARNING: Sequences tr_H2LGU9_H2LGU9_ORYLA_8090 and tr_G3Q790_G3Q790_GASAC_69293 are exactly identical! WARNING: Sequences tr_H2LGU9_H2LGU9_ORYLA_8090 and tr_H3AN28_H3AN28_LATCH_7897 are exactly identical! WARNING: Sequences tr_H2LGU9_H2LGU9_ORYLA_8090 and tr_W5N4B2_W5N4B2_LEPOC_7918 are exactly identical! WARNING: Sequences tr_H2LGU9_H2LGU9_ORYLA_8090 and tr_A0A087YGV2_A0A087YGV2_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2LGU9_H2LGU9_ORYLA_8090 and tr_A0A1S3SC58_A0A1S3SC58_SALSA_8030 are exactly identical! WARNING: Sequences tr_H2LGU9_H2LGU9_ORYLA_8090 and tr_A0A2I4C8H3_A0A2I4C8H3_9TELE_52670 are exactly identical! WARNING: Sequences tr_H2LGU9_H2LGU9_ORYLA_8090 and tr_A0A060YII9_A0A060YII9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_H2LGU9_H2LGU9_ORYLA_8090 and tr_A0A2U9B1C0_A0A2U9B1C0_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H2N1R8_H2N1R8_ORYLA_8090 and sp_Q801F8_DMRT1_ORYLA_8090 are exactly identical! WARNING: Sequences tr_B4JFF2_B4JFF2_DROGR_7222 and tr_B4M4A5_B4M4A5_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4JWS8_B4JWS8_DROGR_7222 and tr_Q29IR4_Q29IR4_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4JWS8_B4JWS8_DROGR_7222 and tr_B4NQ24_B4NQ24_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4JWS8_B4JWS8_DROGR_7222 and tr_B4MA13_B4MA13_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4JWS8_B4JWS8_DROGR_7222 and tr_B4L6U0_B4L6U0_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4JWS8_B4JWS8_DROGR_7222 and tr_A0A0M5J855_A0A0M5J855_DROBS_30019 are exactly identical! WARNING: Sequences tr_G1QTJ9_G1QTJ9_NOMLE_61853 and tr_G3QIZ4_G3QIZ4_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QTJ9_G1QTJ9_NOMLE_61853 and tr_H2PZ24_H2PZ24_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QTJ9_G1QTJ9_NOMLE_61853 and sp_Q96MA1_DMRTB_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QTJ9_G1QTJ9_NOMLE_61853 and tr_F7I5X2_F7I5X2_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1QTJ9_G1QTJ9_NOMLE_61853 and tr_A0A096NFD6_A0A096NFD6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QTJ9_G1QTJ9_NOMLE_61853 and tr_A0A0D9S785_A0A0D9S785_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QTJ9_G1QTJ9_NOMLE_61853 and tr_A0A2K5NIN2_A0A2K5NIN2_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QTJ9_G1QTJ9_NOMLE_61853 and tr_A0A2K6D361_A0A2K6D361_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QTJ9_G1QTJ9_NOMLE_61853 and tr_A0A2K5ZS39_A0A2K5ZS39_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QTJ9_G1QTJ9_NOMLE_61853 and tr_A0A2R9C952_A0A2R9C952_PANPA_9597 are exactly identical! WARNING: Sequences tr_C3YCF3_C3YCF3_BRAFL_7739 and tr_A0A0L8G4T4_A0A0L8G4T4_OCTBM_37653 are exactly identical! WARNING: Sequences tr_A7S4Z8_A7S4Z8_NEMVE_45351 and tr_A0A2B4RJP2_A0A2B4RJP2_STYPI_50429 are exactly identical! WARNING: Sequences tr_A7SFT8_A7SFT8_NEMVE_45351 and tr_A0A2B4S9E9_A0A2B4S9E9_STYPI_50429 are exactly identical! WARNING: Sequences tr_A7SJN2_A7SJN2_NEMVE_45351 and tr_A0A2B4RZA4_A0A2B4RZA4_STYPI_50429 are exactly identical! WARNING: Sequences tr_Q297P2_Q297P2_DROPS_46245 and tr_A0A212FK73_A0A212FK73_DANPL_278856 are exactly identical! WARNING: Sequences tr_Q297P2_Q297P2_DROPS_46245 and tr_A0A0Q9X5S0_A0A0Q9X5S0_DROWI_7260 are exactly identical! WARNING: Sequences tr_Q297P2_Q297P2_DROPS_46245 and tr_A0A0P8YN55_A0A0P8YN55_DROAN_7217 are exactly identical! WARNING: Sequences tr_Q297P2_Q297P2_DROPS_46245 and tr_B4G2T7_B4G2T7_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q297P2_Q297P2_DROPS_46245 and tr_A0A0Q9X136_A0A0Q9X136_DROMO_7230 are exactly identical! WARNING: Sequences tr_Q297P2_Q297P2_DROPS_46245 and tr_A0A0L7L343_A0A0L7L343_9NEOP_104452 are exactly identical! WARNING: Sequences tr_Q297P2_Q297P2_DROPS_46245 and tr_A0A0M4ENU4_A0A0M4ENU4_DROBS_30019 are exactly identical! WARNING: Sequences tr_Q18248_Q18248_CAEEL_6239 and tr_E3MC66_E3MC66_CAERE_31234 are exactly identical! WARNING: Sequences tr_Q18248_Q18248_CAEEL_6239 and tr_A8X4G6_A8X4G6_CAEBR_6238 are exactly identical! WARNING: Sequences tr_Q18248_Q18248_CAEEL_6239 and tr_A0A261CNF2_A0A261CNF2_9PELO_1503980 are exactly identical! WARNING: Sequences tr_Q19291_Q19291_CAEEL_6239 and tr_A8WU66_A8WU66_CAEBR_6238 are exactly identical! WARNING: Sequences tr_Q19291_Q19291_CAEEL_6239 and tr_A0A2G5V4E9_A0A2G5V4E9_9PELO_1611254 are exactly identical! WARNING: Sequences tr_Q9XWN9_Q9XWN9_CAEEL_6239 and tr_A0A2H2I1S4_A0A2H2I1S4_CAEJA_281687 are exactly identical! WARNING: Sequences tr_Q9XWN9_Q9XWN9_CAEEL_6239 and tr_A0A2H2JBJ4_A0A2H2JBJ4_CAEJA_281687 are exactly identical! WARNING: Sequences tr_Q9XWN9_Q9XWN9_CAEEL_6239 and tr_G0N0U6_G0N0U6_CAEBE_135651 are exactly identical! WARNING: Sequences tr_Q9XWN9_Q9XWN9_CAEEL_6239 and tr_E3N6I5_E3N6I5_CAERE_31234 are exactly identical! WARNING: Sequences tr_Q9XWN9_Q9XWN9_CAEEL_6239 and tr_A0A1I7V339_A0A1I7V339_9PELO_1561998 are exactly identical! WARNING: Sequences tr_Q9XWN9_Q9XWN9_CAEEL_6239 and tr_A0A261BM29_A0A261BM29_9PELO_1503980 are exactly identical! WARNING: Sequences tr_E2RLR1_E2RLR1_CANLF_9615 and tr_K7G4F4_K7G4F4_PELSI_13735 are exactly identical! WARNING: Sequences tr_E2RLR1_E2RLR1_CANLF_9615 and tr_A0A067QV42_A0A067QV42_ZOONE_136037 are exactly identical! WARNING: Sequences tr_E2RLR1_E2RLR1_CANLF_9615 and tr_A0A151M8I5_A0A151M8I5_ALLMI_8496 are exactly identical! WARNING: Sequences tr_B0X516_B0X516_CULQU_7176 and tr_B0XLT3_B0XLT3_CULQU_7176 are exactly identical! WARNING: Sequences tr_M4AMD0_M4AMD0_XIPMA_8083 and tr_A0A087X685_A0A087X685_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088A609_A0A088A609_APIME_7460 and tr_A0A2A3EAN1_A0A2A3EAN1_APICC_94128 are exactly identical! WARNING: Sequences tr_A8WEC0_A8WEC0_APIME_7460 and tr_A0A2A3EHY1_A0A2A3EHY1_APICC_94128 are exactly identical! WARNING: Sequences tr_H9ISS8_H9ISS8_BOMMO_7091 and tr_A0A194R1N3_A0A194R1N3_PAPMA_76193 are exactly identical! WARNING: Sequences tr_H9J221_H9J221_BOMMO_7091 and tr_A0A2A4K450_A0A2A4K450_HELVI_7102 are exactly identical! WARNING: Sequences tr_I3K9Q4_I3K9Q4_ORENI_8128 and tr_G3PNG5_G3PNG5_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A0H5RZZ3_A0A0H5RZZ3_BRUMA_6279 and tr_A0A0N4SZ55_A0A0N4SZ55_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0H5RZZ3_A0A0H5RZZ3_BRUMA_6279 and tr_A0A0R3R930_A0A0R3R930_9BILA_42155 are exactly identical! WARNING: Sequences tr_A0A0K0JNM3_A0A0K0JNM3_BRUMA_6279 and tr_A0A0N4TRY1_A0A0N4TRY1_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0K0JNM3_A0A0K0JNM3_BRUMA_6279 and tr_A0A0R3R985_A0A0R3R985_9BILA_42155 are exactly identical! WARNING: Sequences tr_A0A1P6BX41_A0A1P6BX41_BRUMA_6279 and tr_A0A0N4TI52_A0A0N4TI52_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A1P6BX41_A0A1P6BX41_BRUMA_6279 and tr_A0A0R3QJR5_A0A0R3QJR5_9BILA_42155 are exactly identical! WARNING: Sequences tr_A0A1P6BX41_A0A1P6BX41_BRUMA_6279 and tr_A0A0R3RJ21_A0A0R3RJ21_9BILA_1147741 are exactly identical! WARNING: Sequences tr_A0A1P6BX41_A0A1P6BX41_BRUMA_6279 and tr_A0A1I7VWN8_A0A1I7VWN8_LOALO_7209 are exactly identical! WARNING: Sequences tr_E5SJL1_E5SJL1_TRISP_6334 and tr_A0A0V0SD34_A0A0V0SD34_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5SJL1_E5SJL1_TRISP_6334 and tr_A0A0V1CMT6_A0A0V1CMT6_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5SJL1_E5SJL1_TRISP_6334 and tr_A0A0V0X7E1_A0A0V0X7E1_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5SJL1_E5SJL1_TRISP_6334 and tr_A0A0V0VE54_A0A0V0VE54_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5SJL1_E5SJL1_TRISP_6334 and tr_A0A0V1L3Q2_A0A0V1L3Q2_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5SJL1_E5SJL1_TRISP_6334 and tr_A0A0V0ZZC9_A0A0V0ZZC9_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5SJL1_E5SJL1_TRISP_6334 and tr_A0A0V0Y4B8_A0A0V0Y4B8_TRIPS_6337 are exactly identical! WARNING: Sequences tr_E5SJL1_E5SJL1_TRISP_6334 and tr_A0A0V1MEB3_A0A0V1MEB3_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5SQJ7_E5SQJ7_TRISP_6334 and tr_A0A0V0SIB6_A0A0V0SIB6_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5SQJ7_E5SQJ7_TRISP_6334 and tr_A0A0V1D087_A0A0V1D087_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5SQJ7_E5SQJ7_TRISP_6334 and tr_A0A0V0X4Q7_A0A0V0X4Q7_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5SQJ7_E5SQJ7_TRISP_6334 and tr_A0A0V0VKY2_A0A0V0VKY2_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5SQJ7_E5SQJ7_TRISP_6334 and tr_A0A0V1LJQ5_A0A0V1LJQ5_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5SQJ7_E5SQJ7_TRISP_6334 and tr_A0A0V0ZXD6_A0A0V0ZXD6_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5SQJ7_E5SQJ7_TRISP_6334 and tr_A0A0V0XYA4_A0A0V0XYA4_TRIPS_6337 are exactly identical! WARNING: Sequences tr_E5SQJ7_E5SQJ7_TRISP_6334 and tr_A0A0V1N3V6_A0A0V1N3V6_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5SQJ7_E5SQJ7_TRISP_6334 and tr_A0A0V1P0I1_A0A0V1P0I1_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5SQJ7_E5SQJ7_TRISP_6334 and tr_A0A0V1HUN0_A0A0V1HUN0_9BILA_268475 are exactly identical! WARNING: Sequences tr_E5SQJ7_E5SQJ7_TRISP_6334 and tr_A0A0V0UEJ0_A0A0V0UEJ0_9BILA_144512 are exactly identical! WARNING: Sequences tr_W4XYX9_W4XYX9_STRPU_7668 and tr_W5MHG5_W5MHG5_LEPOC_7918 are exactly identical! WARNING: Sequences tr_D6WS24_D6WS24_TRICA_7070 and tr_U4U062_U4U062_DENPD_77166 are exactly identical! WARNING: Sequences tr_H0ZG63_H0ZG63_TAEGU_59729 and tr_A0A218VEN7_A0A218VEN7_9PASE_299123 are exactly identical! WARNING: Sequences tr_H2ZLK4_H2ZLK4_CIOSA_51511 and tr_F6SHF2_F6SHF2_CIOIN_7719 are exactly identical! WARNING: Sequences tr_G0N8U2_G0N8U2_CAEBE_135651 and tr_E3LU68_E3LU68_CAERE_31234 are exactly identical! WARNING: Sequences tr_G0N8U2_G0N8U2_CAEBE_135651 and tr_A0A1I7UGT5_A0A1I7UGT5_9PELO_1561998 are exactly identical! WARNING: Sequences tr_G0N8U2_G0N8U2_CAEBE_135651 and tr_A0A261BVS9_A0A261BVS9_9PELO_1503980 are exactly identical! WARNING: Sequences tr_G0NAS4_G0NAS4_CAEBE_135651 and tr_A0A1I7UU98_A0A1I7UU98_9PELO_1561998 are exactly identical! WARNING: Sequences tr_Q0V986_Q0V986_XENTR_8364 and tr_A0A1L8HNY3_A0A1L8HNY3_XENLA_8355 are exactly identical! WARNING: Sequences tr_Q0V986_Q0V986_XENTR_8364 and tr_A0A1L8HYJ8_A0A1L8HYJ8_XENLA_8355 are exactly identical! WARNING: Sequences tr_E3NAT6_E3NAT6_CAERE_31234 and tr_A8WP12_A8WP12_CAEBR_6238 are exactly identical! WARNING: Sequences tr_E3NAT6_E3NAT6_CAERE_31234 and tr_A8WP13_A8WP13_CAEBR_6238 are exactly identical! WARNING: Sequences tr_E3NAT6_E3NAT6_CAERE_31234 and tr_A0A261C2V0_A0A261C2V0_9PELO_1503980 are exactly identical! WARNING: Sequences tr_E3NAT6_E3NAT6_CAERE_31234 and tr_A0A2G5UUH1_A0A2G5UUH1_9PELO_1611254 are exactly identical! WARNING: Sequences tr_A8X0G4_A8X0G4_CAEBR_6238 and tr_A0A2G5TUQ7_A0A2G5TUQ7_9PELO_1611254 are exactly identical! WARNING: Sequences tr_A8X958_A8X958_CAEBR_6238 and tr_A0A2G5TJ96_A0A2G5TJ96_9PELO_1611254 are exactly identical! WARNING: Sequences tr_G1LSS5_G1LSS5_AILME_9646 and tr_A0A2Y9FSI6_A0A2Y9FSI6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_B3S3S7_B3S3S7_TRIAD_10228 and tr_A0A369RYI8_A0A369RYI8_9METZ_287889 are exactly identical! WARNING: Sequences tr_B3S3S9_B3S3S9_TRIAD_10228 and tr_A0A369RT92_A0A369RT92_9METZ_287889 are exactly identical! WARNING: Sequences tr_M3W908_M3W908_FELCA_9685 and tr_A0A1S3GHD8_A0A1S3GHD8_DIPOR_10020 are exactly identical! WARNING: Sequences tr_T1J9X2_T1J9X2_STRMM_126957 and tr_R7TM57_R7TM57_CAPTE_283909 are exactly identical! WARNING: Sequences tr_R7UT18_R7UT18_CAPTE_283909 and tr_R7UYU2_R7UYU2_CAPTE_283909 are exactly identical! WARNING: Sequences tr_T1KMJ3_T1KMJ3_TETUR_32264 and tr_T1KMJ4_T1KMJ4_TETUR_32264 are exactly identical! WARNING: Sequences tr_U3JTE8_U3JTE8_FICAL_59894 and tr_U3KJA2_U3KJA2_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A3B1JRM3_A0A3B1JRM3_ASTMX_7994 and tr_A0A2D0PSH8_A0A2D0PSH8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A044QVA4_A0A044QVA4_ONCVO_6282 and tr_A0A016V697_A0A016V697_9BILA_53326 are exactly identical! WARNING: Sequences tr_A0A044QVA4_A0A044QVA4_ONCVO_6282 and tr_A0A0B2VL81_A0A0B2VL81_TOXCA_6265 are exactly identical! WARNING: Sequences tr_A0A044QVA4_A0A044QVA4_ONCVO_6282 and tr_A0A183H2X1_A0A183H2X1_9BILA_387005 are exactly identical! WARNING: Sequences tr_A0A044QVA4_A0A044QVA4_ONCVO_6282 and tr_A0A182E886_A0A182E886_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A044QVA4_A0A044QVA4_ONCVO_6282 and tr_A0A2A2J2S8_A0A2A2J2S8_9BILA_2018661 are exactly identical! WARNING: Sequences tr_A0A044QVA4_A0A044QVA4_ONCVO_6282 and tr_A0A2A2J589_A0A2A2J589_9BILA_2018661 are exactly identical! WARNING: Sequences tr_A0A044TYJ6_A0A044TYJ6_ONCVO_6282 and tr_A0A0R3RXF2_A0A0R3RXF2_9BILA_1147741 are exactly identical! WARNING: Sequences tr_A0A044TYJ6_A0A044TYJ6_ONCVO_6282 and tr_A0A182EAG1_A0A182EAG1_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A044TYJ6_A0A044TYJ6_ONCVO_6282 and tr_A0A1I7VDM6_A0A1I7VDM6_LOALO_7209 are exactly identical! WARNING: Sequences tr_A0A044U1Y4_A0A044U1Y4_ONCVO_6282 and tr_A0A0B2VJH1_A0A0B2VJH1_TOXCA_6265 are exactly identical! WARNING: Sequences tr_A0A044U1Y4_A0A044U1Y4_ONCVO_6282 and tr_A0A0R3S1D8_A0A0R3S1D8_9BILA_1147741 are exactly identical! WARNING: Sequences tr_A0A044U1Y4_A0A044U1Y4_ONCVO_6282 and tr_A0A182EWL9_A0A182EWL9_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A044U1Y4_A0A044U1Y4_ONCVO_6282 and tr_A0A1I7VHP6_A0A1I7VHP6_LOALO_7209 are exactly identical! WARNING: Sequences tr_A0A016V2E5_A0A016V2E5_9BILA_53326 and tr_A0A158P964_A0A158P964_ANGCA_6313 are exactly identical! WARNING: Sequences tr_A0A0P7V0F2_A0A0P7V0F2_9TELE_113540 and tr_A0A2I4D7S2_A0A2I4D7S2_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A0P7V0F2_A0A0P7V0F2_9TELE_113540 and tr_A0A2I4DAJ6_A0A2I4DAJ6_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A0K0F5F8_A0A0K0F5F8_STRVS_75913 and tr_A0A0K0DTL1_A0A0K0DTL1_STRER_6248 are exactly identical! WARNING: Sequences tr_A0A0K0F5F8_A0A0K0F5F8_STRVS_75913 and tr_A0A090MY46_A0A090MY46_STRRB_34506 are exactly identical! WARNING: Sequences tr_A0A0K0F5F8_A0A0K0F5F8_STRVS_75913 and tr_A0A0N4ZMM4_A0A0N4ZMM4_PARTI_131310 are exactly identical! WARNING: Sequences tr_A0A0K0F5F8_A0A0K0F5F8_STRVS_75913 and tr_A0A0N5BIE3_A0A0N5BIE3_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0K0FF91_A0A0K0FF91_STRVS_75913 and tr_A0A0K0ECV0_A0A0K0ECV0_STRER_6248 are exactly identical! WARNING: Sequences tr_A0A0K0FF91_A0A0K0FF91_STRVS_75913 and tr_A0A0N5C2X4_A0A0N5C2X4_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0K0FJI3_A0A0K0FJI3_STRVS_75913 and tr_A0A0K0E4H0_A0A0K0E4H0_STRER_6248 are exactly identical! WARNING: Sequences tr_A0A0K0FJI3_A0A0K0FJI3_STRVS_75913 and tr_A0A0N5C920_A0A0N5C920_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0K0FX61_A0A0K0FX61_STRVS_75913 and tr_A0A0K0EFZ2_A0A0K0EFZ2_STRER_6248 are exactly identical! WARNING: Sequences tr_A0A0K0FX61_A0A0K0FX61_STRVS_75913 and tr_A0A090MWR1_A0A090MWR1_STRRB_34506 are exactly identical! WARNING: Sequences tr_A0A0K0FX61_A0A0K0FX61_STRVS_75913 and tr_A0A0N4ZRM7_A0A0N4ZRM7_PARTI_131310 are exactly identical! WARNING: Sequences tr_A0A0K0FX61_A0A0K0FX61_STRVS_75913 and tr_A0A0N5C6J1_A0A0N5C6J1_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0R3WKI4_A0A0R3WKI4_HYDTA_6205 and tr_A0A0R3W8J1_A0A0R3W8J1_TAEAS_60517 are exactly identical! WARNING: Sequences tr_A0A0N0PDS8_A0A0N0PDS8_PAPMA_76193 and tr_A0A194PQ08_A0A194PQ08_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A194RKH1_A0A194RKH1_PAPMA_76193 and tr_A0A194Q922_A0A194Q922_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A091UUG9_A0A091UUG9_NIPNI_128390 and tr_A0A0A0AEM1_A0A0A0AEM1_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091UUG9_A0A091UUG9_NIPNI_128390 and tr_A0A1V4JY49_A0A1V4JY49_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1S3D9H5_A0A1S3D9H5_DIACI_121845 and tr_A0A3Q0JEI9_A0A3Q0JEI9_DIACI_121845 are exactly identical! WARNING: Sequences tr_A0A3Q0IY22_A0A3Q0IY22_DIACI_121845 and tr_A0A3Q0J2G0_A0A3Q0J2G0_DIACI_121845 are exactly identical! WARNING: Sequences tr_A0A2R2MQ06_A0A2R2MQ06_LINUN_7574 and tr_A0A2R2MQ78_A0A2R2MQ78_LINUN_7574 are exactly identical! WARNING: Sequences tr_B5DFV8_B5DFV8_SALSA_8030 and tr_A0A060YDM4_A0A060YDM4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1D2N380_A0A1D2N380_ORCCI_48709 and tr_A0A1W4WFX7_A0A1W4WFX7_AGRPL_224129 are exactly identical! WARNING: Sequences tr_A0A226MID5_A0A226MID5_CALSU_9009 and tr_A0A226PMZ8_A0A226PMZ8_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NAS4_A0A226NAS4_CALSU_9009 and tr_A0A226PQX1_A0A226PQX1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2A2L3Q3_A0A2A2L3Q3_9BILA_2018661 and tr_A0A2A2M0L8_A0A2A2M0L8_9BILA_2018661 are exactly identical! WARNING: Sequences tr_A0A2G8JFU2_A0A2G8JFU2_STIJA_307972 and tr_A0A2G8K7T6_A0A2G8K7T6_STIJA_307972 are exactly identical! WARNING: Sequences tr_A0A210Q2X0_A0A210Q2X0_MIZYE_6573 and tr_A0A2Y9DG89_A0A2Y9DG89_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A2U3V7R2_A0A2U3V7R2_TURTR_9739 and tr_A0A2Y9N8Z3_A0A2Y9N8Z3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4B5Y8_A0A2U4B5Y8_TURTR_9739 and tr_A0A2Y9P0K5_A0A2Y9P0K5_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BB50_A0A2U4BB50_TURTR_9739 and tr_A0A2Y9N3M6_A0A2Y9N3M6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BB50_A0A2U4BB50_TURTR_9739 and tr_A0A384A4P0_A0A384A4P0_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 562 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5R5/3_mltree/Q9Y5R5.raxml.reduced.phy Alignment comprises 1 partitions and 30 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 30 / 30 Gaps: 0.87 % Invariant sites: 3.33 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5R5/3_mltree/Q9Y5R5.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 870 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 30 / 2400 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -25230.582540] Initial branch length optimization [00:00:00 -20135.628369] Model parameter optimization (eps = 10.000000) [00:00:14 -20015.383211] AUTODETECT spr round 1 (radius: 5) [00:01:01 -13798.756555] AUTODETECT spr round 2 (radius: 10) [00:01:53 -10915.748587] AUTODETECT spr round 3 (radius: 15) [00:02:47 -8859.963315] AUTODETECT spr round 4 (radius: 20) [00:03:49 -7269.682023] AUTODETECT spr round 5 (radius: 25) [00:04:51 -6721.805393] SPR radius for FAST iterations: 25 (autodetect) [00:04:51 -6721.805393] Model parameter optimization (eps = 3.000000) [00:05:02 -6715.189088] FAST spr round 1 (radius: 25) [00:05:56 -5760.058508] FAST spr round 2 (radius: 25) [00:06:46 -5710.875953] FAST spr round 3 (radius: 25) [00:07:34 -5707.339351] FAST spr round 4 (radius: 25) [00:08:21 -5707.339021] Model parameter optimization (eps = 1.000000) [00:08:32 -5705.888465] SLOW spr round 1 (radius: 5) [00:09:20 -5705.334810] SLOW spr round 2 (radius: 5) [00:10:07 -5705.334555] SLOW spr round 3 (radius: 10) [00:10:57 -5705.171444] SLOW spr round 4 (radius: 5) [00:11:47 -5701.122411] SLOW spr round 5 (radius: 5) [00:12:34 -5701.122402] SLOW spr round 6 (radius: 10) [00:13:24 -5701.122397] SLOW spr round 7 (radius: 15) [00:14:19 -5697.342308] SLOW spr round 8 (radius: 5) [00:15:12 -5697.096881] SLOW spr round 9 (radius: 5) [00:16:00 -5697.096871] SLOW spr round 10 (radius: 10) [00:16:51 -5697.050043] SLOW spr round 11 (radius: 15) [00:17:45 -5697.050042] SLOW spr round 12 (radius: 20) [00:18:49 -5694.201656] SLOW spr round 13 (radius: 5) [00:19:42 -5694.196475] SLOW spr round 14 (radius: 10) [00:20:33 -5694.196428] SLOW spr round 15 (radius: 15) [00:21:27 -5694.196425] SLOW spr round 16 (radius: 20) [00:22:31 -5694.196425] SLOW spr round 17 (radius: 25) [00:23:46 -5693.922011] SLOW spr round 18 (radius: 5) [00:24:39 -5693.921948] SLOW spr round 19 (radius: 10) [00:25:30 -5693.921941] SLOW spr round 20 (radius: 15) [00:26:25 -5693.921941] SLOW spr round 21 (radius: 20) [00:27:28 -5693.921940] SLOW spr round 22 (radius: 25) [00:28:43 -5693.718738] SLOW spr round 23 (radius: 5) [00:29:36 -5693.717732] SLOW spr round 24 (radius: 10) [00:30:28 -5693.717527] SLOW spr round 25 (radius: 15) [00:31:22 -5693.717476] SLOW spr round 26 (radius: 20) [00:32:26 -5693.717464] SLOW spr round 27 (radius: 25) [00:33:40 -5693.717461] Model parameter optimization (eps = 0.100000) [00:33:46] ML tree search #1, logLikelihood: -5693.504881 [00:33:46 -25194.478809] Initial branch length optimization [00:33:46 -19956.774468] Model parameter optimization (eps = 10.000000) [00:33:57 -19823.597614] AUTODETECT spr round 1 (radius: 5) [00:34:43 -14050.152052] AUTODETECT spr round 2 (radius: 10) [00:35:35 -10287.896323] AUTODETECT spr round 3 (radius: 15) [00:36:32 -8547.865727] AUTODETECT spr round 4 (radius: 20) [00:37:38 -7588.093484] AUTODETECT spr round 5 (radius: 25) [00:38:40 -7315.688543] SPR radius for FAST iterations: 25 (autodetect) [00:38:40 -7315.688543] Model parameter optimization (eps = 3.000000) [00:38:52 -7309.844489] FAST spr round 1 (radius: 25) [00:39:48 -5896.464676] FAST spr round 2 (radius: 25) [00:40:39 -5643.679650] FAST spr round 3 (radius: 25) [00:41:28 -5623.555229] FAST spr round 4 (radius: 25) [00:42:16 -5620.547203] FAST spr round 5 (radius: 25) [00:43:04 -5620.259313] FAST spr round 6 (radius: 25) [00:43:51 -5620.259038] Model parameter optimization (eps = 1.000000) [00:44:00 -5617.524289] SLOW spr round 1 (radius: 5) [00:44:49 -5617.487209] SLOW spr round 2 (radius: 10) [00:45:40 -5609.285072] SLOW spr round 3 (radius: 5) [00:46:32 -5604.436992] SLOW spr round 4 (radius: 5) [00:47:20 -5604.436981] SLOW spr round 5 (radius: 10) [00:48:10 -5604.436980] SLOW spr round 6 (radius: 15) [00:49:06 -5587.047210] SLOW spr round 7 (radius: 5) [00:50:01 -5576.116124] SLOW spr round 8 (radius: 5) [00:50:50 -5576.108019] SLOW spr round 9 (radius: 10) [00:51:40 -5576.105471] SLOW spr round 10 (radius: 15) [00:52:36 -5574.480514] SLOW spr round 11 (radius: 5) [00:53:30 -5574.349265] SLOW spr round 12 (radius: 5) [00:54:20 -5574.349127] SLOW spr round 13 (radius: 10) [00:55:10 -5574.349119] SLOW spr round 14 (radius: 15) [00:56:06 -5532.267032] SLOW spr round 15 (radius: 5) [00:57:01 -5484.048375] SLOW spr round 16 (radius: 5) [00:57:49 -5484.048085] SLOW spr round 17 (radius: 10) [00:58:40 -5484.048076] SLOW spr round 18 (radius: 15) [00:59:34 -5482.464990] SLOW spr round 19 (radius: 5) [01:00:26 -5482.464721] SLOW spr round 20 (radius: 10) [01:01:17 -5482.464663] SLOW spr round 21 (radius: 15) [01:02:11 -5482.204115] SLOW spr round 22 (radius: 5) [01:03:04 -5482.203691] SLOW spr round 23 (radius: 10) [01:03:55 -5482.203630] SLOW spr round 24 (radius: 15) [01:04:49 -5482.203619] SLOW spr round 25 (radius: 20) [01:05:52 -5482.203608] SLOW spr round 26 (radius: 25) [01:07:03 -5474.804814] SLOW spr round 27 (radius: 5) [01:07:56 -5474.804814] SLOW spr round 28 (radius: 10) [01:08:48 -5474.577638] SLOW spr round 29 (radius: 5) [01:09:37 -5473.847130] SLOW spr round 30 (radius: 5) [01:10:25 -5473.847120] SLOW spr round 31 (radius: 10) [01:11:15 -5473.847120] SLOW spr round 32 (radius: 15) [01:12:10 -5473.847120] SLOW spr round 33 (radius: 20) [01:13:15 -5436.531994] SLOW spr round 34 (radius: 5) [01:14:09 -5436.531912] SLOW spr round 35 (radius: 10) [01:15:00 -5436.531906] SLOW spr round 36 (radius: 15) [01:15:54 -5436.531906] SLOW spr round 37 (radius: 20) [01:17:00 -5436.531906] SLOW spr round 38 (radius: 25) [01:18:16 -5434.774628] SLOW spr round 39 (radius: 5) [01:19:09 -5434.774628] SLOW spr round 40 (radius: 10) [01:20:01 -5434.774628] SLOW spr round 41 (radius: 15) [01:20:56 -5434.774628] SLOW spr round 42 (radius: 20) [01:22:01 -5434.774628] SLOW spr round 43 (radius: 25) [01:23:17 -5434.774628] Model parameter optimization (eps = 0.100000) [01:23:26] ML tree search #2, logLikelihood: -5432.868801 [01:23:26 -25238.547431] Initial branch length optimization [01:23:26 -19898.705286] Model parameter optimization (eps = 10.000000) [01:23:35 -19772.550042] AUTODETECT spr round 1 (radius: 5) [01:24:21 -13788.285510] AUTODETECT spr round 2 (radius: 10) [01:25:12 -10433.156318] AUTODETECT spr round 3 (radius: 15) [01:26:08 -8568.170845] AUTODETECT spr round 4 (radius: 20) [01:27:15 -7530.499747] AUTODETECT spr round 5 (radius: 25) [01:28:16 -6702.855118] SPR radius for FAST iterations: 25 (autodetect) [01:28:16 -6702.855118] Model parameter optimization (eps = 3.000000) [01:28:22 -6701.037047] FAST spr round 1 (radius: 25) [01:29:16 -5649.026270] FAST spr round 2 (radius: 25) [01:30:06 -5480.088441] FAST spr round 3 (radius: 25) [01:30:55 -5469.984825] FAST spr round 4 (radius: 25) [01:31:42 -5469.984264] Model parameter optimization (eps = 1.000000) [01:31:50 -5468.875888] SLOW spr round 1 (radius: 5) [01:32:39 -5468.288402] SLOW spr round 2 (radius: 5) [01:33:28 -5465.667113] SLOW spr round 3 (radius: 5) [01:34:16 -5465.463123] SLOW spr round 4 (radius: 5) [01:35:03 -5465.462949] SLOW spr round 5 (radius: 10) [01:35:55 -5447.439843] SLOW spr round 6 (radius: 5) [01:36:46 -5441.484911] SLOW spr round 7 (radius: 5) [01:37:35 -5441.458877] SLOW spr round 8 (radius: 10) [01:38:26 -5441.243701] SLOW spr round 9 (radius: 5) [01:39:16 -5441.058945] SLOW spr round 10 (radius: 5) [01:40:04 -5441.058944] SLOW spr round 11 (radius: 10) [01:40:55 -5441.058944] SLOW spr round 12 (radius: 15) [01:41:51 -5440.064028] SLOW spr round 13 (radius: 5) [01:42:44 -5440.061300] SLOW spr round 14 (radius: 10) [01:43:35 -5439.751511] SLOW spr round 15 (radius: 5) [01:44:26 -5439.750519] SLOW spr round 16 (radius: 10) [01:45:16 -5439.750512] SLOW spr round 17 (radius: 15) [01:46:12 -5439.750512] SLOW spr round 18 (radius: 20) [01:47:16 -5409.774552] SLOW spr round 19 (radius: 5) [01:48:12 -5370.356321] SLOW spr round 20 (radius: 5) [01:49:02 -5370.356256] SLOW spr round 21 (radius: 10) [01:49:52 -5370.356253] SLOW spr round 22 (radius: 15) [01:50:47 -5370.356251] SLOW spr round 23 (radius: 20) [01:51:50 -5370.356249] SLOW spr round 24 (radius: 25) [01:53:03 -5349.997445] SLOW spr round 25 (radius: 5) [01:53:59 -5315.107686] SLOW spr round 26 (radius: 5) [01:54:50 -5308.294330] SLOW spr round 27 (radius: 5) [01:55:40 -5307.150154] SLOW spr round 28 (radius: 5) [01:56:27 -5307.150015] SLOW spr round 29 (radius: 10) [01:57:18 -5304.569628] SLOW spr round 30 (radius: 5) [01:58:08 -5304.569581] SLOW spr round 31 (radius: 10) [01:58:58 -5303.345474] SLOW spr round 32 (radius: 5) [01:59:48 -5303.345472] SLOW spr round 33 (radius: 10) [02:00:39 -5303.345471] SLOW spr round 34 (radius: 15) [02:01:35 -5302.346673] SLOW spr round 35 (radius: 5) [02:02:28 -5301.546910] SLOW spr round 36 (radius: 5) [02:03:17 -5301.546758] SLOW spr round 37 (radius: 10) [02:04:07 -5301.546756] SLOW spr round 38 (radius: 15) [02:05:03 -5301.546755] SLOW spr round 39 (radius: 20) [02:06:11 -5301.546754] SLOW spr round 40 (radius: 25) [02:07:29 -5299.733848] SLOW spr round 41 (radius: 5) [02:08:23 -5299.733847] SLOW spr round 42 (radius: 10) [02:09:14 -5299.733847] SLOW spr round 43 (radius: 15) [02:10:11 -5299.039297] SLOW spr round 44 (radius: 5) [02:11:03 -5299.036585] SLOW spr round 45 (radius: 10) [02:11:54 -5299.036275] SLOW spr round 46 (radius: 15) [02:12:51 -5299.036236] SLOW spr round 47 (radius: 20) [02:13:59 -5299.036230] SLOW spr round 48 (radius: 25) [02:15:16 -5296.161924] SLOW spr round 49 (radius: 5) [02:16:10 -5296.161864] SLOW spr round 50 (radius: 10) [02:17:01 -5296.161862] SLOW spr round 51 (radius: 15) [02:17:57 -5296.161862] SLOW spr round 52 (radius: 20) [02:19:05 -5296.161861] SLOW spr round 53 (radius: 25) [02:20:22 -5296.161860] Model parameter optimization (eps = 0.100000) [02:20:25] ML tree search #3, logLikelihood: -5296.094166 [02:20:25 -25199.621036] Initial branch length optimization [02:20:26 -19998.769355] Model parameter optimization (eps = 10.000000) [02:20:36 -19867.675607] AUTODETECT spr round 1 (radius: 5) [02:21:22 -13610.373953] AUTODETECT spr round 2 (radius: 10) [02:22:14 -10145.908480] AUTODETECT spr round 3 (radius: 15) [02:23:13 -8366.035134] AUTODETECT spr round 4 (radius: 20) [02:24:26 -7209.285538] AUTODETECT spr round 5 (radius: 25) [02:25:27 -7013.335062] SPR radius for FAST iterations: 25 (autodetect) [02:25:27 -7013.335062] Model parameter optimization (eps = 3.000000) [02:25:37 -7007.191286] FAST spr round 1 (radius: 25) [02:26:30 -6049.776360] FAST spr round 2 (radius: 25) [02:27:19 -5965.550576] FAST spr round 3 (radius: 25) [02:28:08 -5963.240723] FAST spr round 4 (radius: 25) [02:28:55 -5962.555226] FAST spr round 5 (radius: 25) [02:29:42 -5962.554725] Model parameter optimization (eps = 1.000000) [02:29:47 -5961.584841] SLOW spr round 1 (radius: 5) [02:30:36 -5960.920891] SLOW spr round 2 (radius: 5) [02:31:25 -5960.919503] SLOW spr round 3 (radius: 10) [02:32:16 -5960.918928] SLOW spr round 4 (radius: 15) [02:33:14 -5912.853903] SLOW spr round 5 (radius: 5) [02:34:09 -5906.670771] SLOW spr round 6 (radius: 5) [02:34:59 -5906.346149] SLOW spr round 7 (radius: 5) [02:35:47 -5906.345105] SLOW spr round 8 (radius: 10) [02:36:37 -5900.798018] SLOW spr round 9 (radius: 5) [02:37:28 -5900.797797] SLOW spr round 10 (radius: 10) [02:38:19 -5900.797585] SLOW spr round 11 (radius: 15) [02:39:16 -5898.211250] SLOW spr round 12 (radius: 5) [02:40:10 -5898.210001] SLOW spr round 13 (radius: 10) [02:41:01 -5898.209808] SLOW spr round 14 (radius: 15) [02:41:57 -5898.209632] SLOW spr round 15 (radius: 20) [02:43:08 -5867.860946] SLOW spr round 16 (radius: 5) [02:44:03 -5852.909384] SLOW spr round 17 (radius: 5) [02:44:53 -5852.846309] SLOW spr round 18 (radius: 10) [02:45:44 -5845.857664] SLOW spr round 19 (radius: 5) [02:46:35 -5845.639132] SLOW spr round 20 (radius: 5) [02:47:23 -5845.638496] SLOW spr round 21 (radius: 10) [02:48:13 -5845.638495] SLOW spr round 22 (radius: 15) [02:49:10 -5845.012996] SLOW spr round 23 (radius: 5) [02:50:03 -5845.012996] SLOW spr round 24 (radius: 10) [02:50:54 -5845.012996] SLOW spr round 25 (radius: 15) [02:51:50 -5845.012996] SLOW spr round 26 (radius: 20) [02:53:01 -5772.966264] SLOW spr round 27 (radius: 5) [02:53:56 -5716.891548] SLOW spr round 28 (radius: 5) [02:54:47 -5682.837428] SLOW spr round 29 (radius: 5) [02:55:35 -5682.836070] SLOW spr round 30 (radius: 10) [02:56:26 -5682.835969] SLOW spr round 31 (radius: 15) [02:57:23 -5682.835962] SLOW spr round 32 (radius: 20) [02:58:32 -5682.835961] SLOW spr round 33 (radius: 25) [02:59:51 -5675.151388] SLOW spr round 34 (radius: 5) [03:00:47 -5618.636940] SLOW spr round 35 (radius: 5) [03:01:37 -5618.506860] SLOW spr round 36 (radius: 5) [03:02:26 -5618.505534] SLOW spr round 37 (radius: 10) [03:03:16 -5618.505468] SLOW spr round 38 (radius: 15) [03:04:13 -5618.505465] SLOW spr round 39 (radius: 20) [03:05:22 -5618.505465] SLOW spr round 40 (radius: 25) [03:06:42 -5616.922467] SLOW spr round 41 (radius: 5) [03:07:36 -5616.921940] SLOW spr round 42 (radius: 10) [03:08:28 -5616.537512] SLOW spr round 43 (radius: 5) [03:09:19 -5616.537512] SLOW spr round 44 (radius: 10) [03:10:10 -5616.537512] SLOW spr round 45 (radius: 15) [03:11:06 -5616.537512] SLOW spr round 46 (radius: 20) [03:12:16 -5616.537512] SLOW spr round 47 (radius: 25) [03:13:36 -5616.537512] Model parameter optimization (eps = 0.100000) [03:13:39] ML tree search #4, logLikelihood: -5616.474830 [03:13:39 -25228.223659] Initial branch length optimization [03:13:39 -20006.558976] Model parameter optimization (eps = 10.000000) [03:13:49 -19877.606760] AUTODETECT spr round 1 (radius: 5) [03:14:35 -13939.148935] AUTODETECT spr round 2 (radius: 10) [03:15:26 -10685.914942] AUTODETECT spr round 3 (radius: 15) [03:16:24 -7843.555241] AUTODETECT spr round 4 (radius: 20) [03:17:30 -6630.962596] AUTODETECT spr round 5 (radius: 25) [03:18:31 -6335.683774] SPR radius for FAST iterations: 25 (autodetect) [03:18:31 -6335.683774] Model parameter optimization (eps = 3.000000) [03:18:40 -6328.453120] FAST spr round 1 (radius: 25) [03:19:35 -5583.708246] FAST spr round 2 (radius: 25) [03:20:25 -5517.971985] FAST spr round 3 (radius: 25) [03:21:14 -5517.369254] FAST spr round 4 (radius: 25) [03:22:03 -5516.331604] FAST spr round 5 (radius: 25) [03:22:51 -5516.331591] Model parameter optimization (eps = 1.000000) [03:22:55 -5515.659758] SLOW spr round 1 (radius: 5) [03:23:44 -5515.455116] SLOW spr round 2 (radius: 5) [03:24:32 -5515.454507] SLOW spr round 3 (radius: 10) [03:25:24 -5511.678801] SLOW spr round 4 (radius: 5) [03:26:15 -5507.538953] SLOW spr round 5 (radius: 5) [03:27:03 -5507.538097] SLOW spr round 6 (radius: 10) [03:27:54 -5507.023297] SLOW spr round 7 (radius: 5) [03:28:44 -5506.808033] SLOW spr round 8 (radius: 5) [03:29:32 -5506.808033] SLOW spr round 9 (radius: 10) [03:30:23 -5506.808033] SLOW spr round 10 (radius: 15) [03:31:20 -5503.667495] SLOW spr round 11 (radius: 5) [03:32:13 -5502.126120] SLOW spr round 12 (radius: 5) [03:33:01 -5502.125810] SLOW spr round 13 (radius: 10) [03:33:52 -5502.027630] SLOW spr round 14 (radius: 15) [03:34:48 -5501.886863] SLOW spr round 15 (radius: 5) [03:35:41 -5501.886860] SLOW spr round 16 (radius: 10) [03:36:33 -5500.488571] SLOW spr round 17 (radius: 5) [03:37:23 -5500.480923] SLOW spr round 18 (radius: 10) [03:38:14 -5500.477812] SLOW spr round 19 (radius: 15) [03:39:09 -5500.476028] SLOW spr round 20 (radius: 20) [03:40:14 -5452.945046] SLOW spr round 21 (radius: 5) [03:41:09 -5388.680232] SLOW spr round 22 (radius: 5) [03:42:00 -5374.809264] SLOW spr round 23 (radius: 5) [03:42:48 -5369.593528] SLOW spr round 24 (radius: 5) [03:43:36 -5369.593505] SLOW spr round 25 (radius: 10) [03:44:27 -5368.684196] SLOW spr round 26 (radius: 5) [03:45:17 -5368.629851] SLOW spr round 27 (radius: 10) [03:46:08 -5363.541901] SLOW spr round 28 (radius: 5) [03:46:58 -5363.098852] SLOW spr round 29 (radius: 5) [03:47:46 -5363.098789] SLOW spr round 30 (radius: 10) [03:48:37 -5363.098787] SLOW spr round 31 (radius: 15) [03:49:32 -5360.005018] SLOW spr round 32 (radius: 5) [03:50:24 -5360.001307] SLOW spr round 33 (radius: 10) [03:51:16 -5360.000721] SLOW spr round 34 (radius: 15) [03:52:10 -5360.000582] SLOW spr round 35 (radius: 20) [03:53:14 -5359.804633] SLOW spr round 36 (radius: 5) [03:54:07 -5359.804549] SLOW spr round 37 (radius: 10) [03:54:59 -5359.804549] SLOW spr round 38 (radius: 15) [03:55:53 -5359.804545] SLOW spr round 39 (radius: 20) [03:56:55 -5359.804545] SLOW spr round 40 (radius: 25) [03:58:07 -5330.698019] SLOW spr round 41 (radius: 5) [03:59:02 -5230.284772] SLOW spr round 42 (radius: 5) [03:59:53 -5220.386856] SLOW spr round 43 (radius: 5) [04:00:41 -5220.386746] SLOW spr round 44 (radius: 10) [04:01:32 -5220.386734] SLOW spr round 45 (radius: 15) [04:02:27 -5220.386716] SLOW spr round 46 (radius: 20) [04:03:28 -5220.386716] SLOW spr round 47 (radius: 25) [04:04:39 -5220.386716] Model parameter optimization (eps = 0.100000) [04:04:45] ML tree search #5, logLikelihood: -5220.116952 [04:04:45 -25367.714223] Initial branch length optimization [04:04:46 -20052.796426] Model parameter optimization (eps = 10.000000) [04:04:56 -19922.162806] AUTODETECT spr round 1 (radius: 5) [04:05:44 -13925.960991] AUTODETECT spr round 2 (radius: 10) [04:06:35 -10499.988772] AUTODETECT spr round 3 (radius: 15) [04:07:30 -9026.966435] AUTODETECT spr round 4 (radius: 20) [04:08:42 -7892.994871] AUTODETECT spr round 5 (radius: 25) [04:09:46 -7029.031525] SPR radius for FAST iterations: 25 (autodetect) [04:09:46 -7029.031525] Model parameter optimization (eps = 3.000000) [04:10:05 -7015.410575] FAST spr round 1 (radius: 25) [04:10:57 -6031.459719] FAST spr round 2 (radius: 25) [04:11:46 -5929.661464] FAST spr round 3 (radius: 25) [04:12:34 -5909.055282] FAST spr round 4 (radius: 25) [04:13:20 -5909.026797] Model parameter optimization (eps = 1.000000) [04:13:29 -5907.022485] SLOW spr round 1 (radius: 5) [04:14:18 -5905.383409] SLOW spr round 2 (radius: 5) [04:15:07 -5899.107958] SLOW spr round 3 (radius: 5) [04:15:54 -5899.107707] SLOW spr round 4 (radius: 10) [04:16:45 -5889.165033] SLOW spr round 5 (radius: 5) [04:17:37 -5878.126860] SLOW spr round 6 (radius: 5) [04:18:25 -5878.126585] SLOW spr round 7 (radius: 10) [04:19:15 -5878.105339] SLOW spr round 8 (radius: 15) [04:20:12 -5758.277523] SLOW spr round 9 (radius: 5) [04:21:07 -5689.081855] SLOW spr round 10 (radius: 5) [04:21:57 -5676.726827] SLOW spr round 11 (radius: 5) [04:22:46 -5660.839301] SLOW spr round 12 (radius: 5) [04:23:34 -5660.838290] SLOW spr round 13 (radius: 10) [04:24:26 -5614.547098] SLOW spr round 14 (radius: 5) [04:25:16 -5577.100029] SLOW spr round 15 (radius: 5) [04:26:04 -5577.099968] SLOW spr round 16 (radius: 10) [04:26:54 -5577.099965] SLOW spr round 17 (radius: 15) [04:27:49 -5555.207709] SLOW spr round 18 (radius: 5) [04:28:41 -5554.624098] SLOW spr round 19 (radius: 5) [04:29:30 -5554.624091] SLOW spr round 20 (radius: 10) [04:30:20 -5554.624091] SLOW spr round 21 (radius: 15) [04:31:14 -5554.624090] SLOW spr round 22 (radius: 20) [04:32:17 -5522.919063] SLOW spr round 23 (radius: 5) [04:33:12 -5509.294688] SLOW spr round 24 (radius: 5) [04:34:01 -5508.807398] SLOW spr round 25 (radius: 5) [04:34:49 -5508.807396] SLOW spr round 26 (radius: 10) [04:35:39 -5507.709593] SLOW spr round 27 (radius: 5) [04:36:28 -5507.709581] SLOW spr round 28 (radius: 10) [04:37:18 -5506.693040] SLOW spr round 29 (radius: 5) [04:38:07 -5506.693040] SLOW spr round 30 (radius: 10) [04:38:57 -5506.693040] SLOW spr round 31 (radius: 15) [04:39:50 -5504.983598] SLOW spr round 32 (radius: 5) [04:40:42 -5504.983519] SLOW spr round 33 (radius: 10) [04:41:33 -5504.983517] SLOW spr round 34 (radius: 15) [04:42:27 -5504.805234] SLOW spr round 35 (radius: 5) [04:43:19 -5504.805234] SLOW spr round 36 (radius: 10) [04:44:09 -5504.805234] SLOW spr round 37 (radius: 15) [04:45:03 -5504.805234] SLOW spr round 38 (radius: 20) [04:46:05 -5504.805230] SLOW spr round 39 (radius: 25) [04:47:11 -5484.364449] SLOW spr round 40 (radius: 5) [04:48:05 -5482.092298] SLOW spr round 41 (radius: 5) [04:48:55 -5482.092190] SLOW spr round 42 (radius: 10) [04:49:44 -5482.092189] SLOW spr round 43 (radius: 15) [04:50:37 -5481.157480] SLOW spr round 44 (radius: 5) [04:51:29 -5481.157480] SLOW spr round 45 (radius: 10) [04:52:19 -5481.157479] SLOW spr round 46 (radius: 15) [04:53:12 -5481.157479] SLOW spr round 47 (radius: 20) [04:54:12 -5481.157479] SLOW spr round 48 (radius: 25) [04:55:15 -5481.039170] SLOW spr round 49 (radius: 5) [04:56:09 -5481.037168] SLOW spr round 50 (radius: 10) [04:56:59 -5480.500498] SLOW spr round 51 (radius: 5) [04:57:48 -5480.500498] SLOW spr round 52 (radius: 10) [04:58:38 -5480.500498] SLOW spr round 53 (radius: 15) [04:59:31 -5480.500498] SLOW spr round 54 (radius: 20) [05:00:31 -5480.500498] SLOW spr round 55 (radius: 25) [05:01:35 -5480.500498] Model parameter optimization (eps = 0.100000) [05:01:44] ML tree search #6, logLikelihood: -5479.085054 [05:01:44 -25272.029150] Initial branch length optimization [05:01:45 -19842.096930] Model parameter optimization (eps = 10.000000) [05:01:54 -19713.690342] AUTODETECT spr round 1 (radius: 5) [05:02:40 -13472.499116] AUTODETECT spr round 2 (radius: 10) [05:03:32 -10610.600540] AUTODETECT spr round 3 (radius: 15) [05:04:26 -9186.331334] AUTODETECT spr round 4 (radius: 20) [05:05:28 -8035.515775] AUTODETECT spr round 5 (radius: 25) [05:06:39 -7567.492842] SPR radius for FAST iterations: 25 (autodetect) [05:06:39 -7567.492842] Model parameter optimization (eps = 3.000000) [05:06:49 -7555.264343] FAST spr round 1 (radius: 25) [05:07:45 -6318.809654] FAST spr round 2 (radius: 25) [05:08:35 -6269.992443] FAST spr round 3 (radius: 25) [05:09:23 -6229.974368] FAST spr round 4 (radius: 25) [05:10:10 -6226.192605] FAST spr round 5 (radius: 25) [05:10:56 -6225.581284] FAST spr round 6 (radius: 25) [05:11:43 -6225.581251] Model parameter optimization (eps = 1.000000) [05:11:53 -6223.639972] SLOW spr round 1 (radius: 5) [05:12:43 -6221.409622] SLOW spr round 2 (radius: 5) [05:13:32 -6221.036330] SLOW spr round 3 (radius: 5) [05:14:21 -6221.036178] SLOW spr round 4 (radius: 10) [05:15:11 -6220.969587] SLOW spr round 5 (radius: 15) [05:16:06 -6218.955692] SLOW spr round 6 (radius: 5) [05:16:59 -6218.952744] SLOW spr round 7 (radius: 10) [05:17:51 -6218.210901] SLOW spr round 8 (radius: 5) [05:18:42 -6217.809790] SLOW spr round 9 (radius: 5) [05:19:31 -6217.808776] SLOW spr round 10 (radius: 10) [05:20:22 -6217.808731] SLOW spr round 11 (radius: 15) [05:21:16 -6215.620564] SLOW spr round 12 (radius: 5) [05:22:08 -6215.392916] SLOW spr round 13 (radius: 5) [05:22:57 -6215.392900] SLOW spr round 14 (radius: 10) [05:23:48 -6215.392899] SLOW spr round 15 (radius: 15) [05:24:42 -6215.392899] SLOW spr round 16 (radius: 20) [05:25:43 -6176.919922] SLOW spr round 17 (radius: 5) [05:26:39 -6157.421295] SLOW spr round 18 (radius: 5) [05:27:29 -6157.192737] SLOW spr round 19 (radius: 5) [05:28:18 -6156.069844] SLOW spr round 20 (radius: 5) [05:29:06 -6156.069629] SLOW spr round 21 (radius: 10) [05:29:57 -6155.585404] SLOW spr round 22 (radius: 5) [05:30:47 -6155.585234] SLOW spr round 23 (radius: 10) [05:31:38 -6155.585087] SLOW spr round 24 (radius: 15) [05:32:32 -6149.795510] SLOW spr round 25 (radius: 5) [05:33:25 -6148.950430] SLOW spr round 26 (radius: 5) [05:34:14 -6148.950334] SLOW spr round 27 (radius: 10) [05:35:05 -6148.950248] SLOW spr round 28 (radius: 15) [05:36:00 -6148.950169] SLOW spr round 29 (radius: 20) [05:37:02 -6113.883639] SLOW spr round 30 (radius: 5) [05:37:56 -6112.980876] SLOW spr round 31 (radius: 5) [05:38:46 -6112.980713] SLOW spr round 32 (radius: 10) [05:39:37 -6112.980692] SLOW spr round 33 (radius: 15) [05:40:31 -6112.980680] SLOW spr round 34 (radius: 20) [05:41:34 -6111.014898] SLOW spr round 35 (radius: 5) [05:42:28 -6111.014840] SLOW spr round 36 (radius: 10) [05:43:21 -6110.591144] SLOW spr round 37 (radius: 5) [05:44:12 -6110.044126] SLOW spr round 38 (radius: 5) [05:45:00 -6110.043970] SLOW spr round 39 (radius: 10) [05:45:51 -6110.043946] SLOW spr round 40 (radius: 15) [05:46:47 -6110.043934] SLOW spr round 41 (radius: 20) [05:47:51 -6109.224492] SLOW spr round 42 (radius: 5) [05:48:45 -6109.224487] SLOW spr round 43 (radius: 10) [05:49:36 -6109.224483] SLOW spr round 44 (radius: 15) [05:50:31 -6109.224479] SLOW spr round 45 (radius: 20) [05:51:35 -6109.224476] SLOW spr round 46 (radius: 25) [05:52:48 -6106.829712] SLOW spr round 47 (radius: 5) [05:53:43 -6106.054908] SLOW spr round 48 (radius: 5) [05:54:33 -6106.053978] SLOW spr round 49 (radius: 10) [05:55:23 -6106.053802] SLOW spr round 50 (radius: 15) [05:56:18 -6106.053766] SLOW spr round 51 (radius: 20) [05:57:23 -6104.380313] SLOW spr round 52 (radius: 5) [05:58:18 -6104.380310] SLOW spr round 53 (radius: 10) [05:59:09 -6104.380309] SLOW spr round 54 (radius: 15) [06:00:05 -6104.380308] SLOW spr round 55 (radius: 20) [06:01:10 -6104.380307] SLOW spr round 56 (radius: 25) [06:02:24 -6075.524153] SLOW spr round 57 (radius: 5) [06:03:18 -6075.524103] SLOW spr round 58 (radius: 10) [06:04:11 -6075.524095] SLOW spr round 59 (radius: 15) [06:05:06 -6075.524092] SLOW spr round 60 (radius: 20) [06:06:10 -6075.524091] SLOW spr round 61 (radius: 25) [06:07:24 -6075.524091] Model parameter optimization (eps = 0.100000) [06:07:30] ML tree search #7, logLikelihood: -6075.426878 [06:07:30 -25292.578320] Initial branch length optimization [06:07:31 -20009.039446] Model parameter optimization (eps = 10.000000) [06:07:45 -19884.241303] AUTODETECT spr round 1 (radius: 5) [06:08:32 -14133.770677] AUTODETECT spr round 2 (radius: 10) [06:09:23 -10343.148250] AUTODETECT spr round 3 (radius: 15) [06:10:18 -8703.679923] AUTODETECT spr round 4 (radius: 20) [06:11:22 -7715.946836] AUTODETECT spr round 5 (radius: 25) [06:12:22 -7522.769459] SPR radius for FAST iterations: 25 (autodetect) [06:12:22 -7522.769459] Model parameter optimization (eps = 3.000000) [06:12:37 -7509.705485] FAST spr round 1 (radius: 25) [06:13:32 -6499.929290] FAST spr round 2 (radius: 25) [06:14:22 -6303.377512] FAST spr round 3 (radius: 25) [06:15:12 -6189.456183] FAST spr round 4 (radius: 25) [06:16:00 -6181.962684] FAST spr round 5 (radius: 25) [06:16:47 -6164.102324] FAST spr round 6 (radius: 25) [06:17:34 -6164.101400] Model parameter optimization (eps = 1.000000) [06:17:41 -6162.411287] SLOW spr round 1 (radius: 5) [06:18:31 -6161.023113] SLOW spr round 2 (radius: 5) [06:19:19 -6161.021960] SLOW spr round 3 (radius: 10) [06:20:10 -6113.928926] SLOW spr round 4 (radius: 5) [06:21:02 -6112.569855] SLOW spr round 5 (radius: 5) [06:21:51 -6111.819002] SLOW spr round 6 (radius: 5) [06:22:39 -6111.812672] SLOW spr round 7 (radius: 10) [06:23:29 -6111.812450] SLOW spr round 8 (radius: 15) [06:24:25 -6053.506699] SLOW spr round 9 (radius: 5) [06:25:18 -6053.506392] SLOW spr round 10 (radius: 10) [06:26:09 -6052.695510] SLOW spr round 11 (radius: 5) [06:26:59 -6052.695378] SLOW spr round 12 (radius: 10) [06:27:50 -6052.695376] SLOW spr round 13 (radius: 15) [06:28:45 -6052.695375] SLOW spr round 14 (radius: 20) [06:29:48 -6052.484321] SLOW spr round 15 (radius: 5) [06:30:41 -6052.484321] SLOW spr round 16 (radius: 10) [06:31:33 -6052.484321] SLOW spr round 17 (radius: 15) [06:32:28 -6052.484321] SLOW spr round 18 (radius: 20) [06:33:32 -6051.826241] SLOW spr round 19 (radius: 5) [06:34:25 -6051.826241] SLOW spr round 20 (radius: 10) [06:35:16 -6051.826241] SLOW spr round 21 (radius: 15) [06:36:12 -6051.826241] SLOW spr round 22 (radius: 20) [06:37:16 -6051.826241] SLOW spr round 23 (radius: 25) [06:38:30 -5941.884866] SLOW spr round 24 (radius: 5) [06:39:25 -5928.640314] SLOW spr round 25 (radius: 5) [06:40:15 -5927.822936] SLOW spr round 26 (radius: 5) [06:41:03 -5927.822919] SLOW spr round 27 (radius: 10) [06:41:54 -5921.036188] SLOW spr round 28 (radius: 5) [06:42:45 -5918.785592] SLOW spr round 29 (radius: 5) [06:43:33 -5913.832569] SLOW spr round 30 (radius: 5) [06:44:21 -5913.832568] SLOW spr round 31 (radius: 10) [06:45:12 -5912.183077] SLOW spr round 32 (radius: 5) [06:46:03 -5906.238159] SLOW spr round 33 (radius: 5) [06:46:51 -5906.238097] SLOW spr round 34 (radius: 10) [06:47:42 -5904.503608] SLOW spr round 35 (radius: 5) [06:48:32 -5904.503608] SLOW spr round 36 (radius: 10) [06:49:22 -5904.503608] SLOW spr round 37 (radius: 15) [06:50:19 -5837.325117] SLOW spr round 38 (radius: 5) [06:51:13 -5836.192723] SLOW spr round 39 (radius: 5) [06:52:01 -5836.192718] SLOW spr round 40 (radius: 10) [06:52:52 -5836.192692] SLOW spr round 41 (radius: 15) [06:53:48 -5836.192690] SLOW spr round 42 (radius: 20) [06:54:57 -5835.618837] SLOW spr round 43 (radius: 5) [06:55:50 -5835.618826] SLOW spr round 44 (radius: 10) [06:56:42 -5833.810673] SLOW spr round 45 (radius: 5) [06:57:32 -5833.810673] SLOW spr round 46 (radius: 10) [06:58:22 -5833.810673] SLOW spr round 47 (radius: 15) [06:59:18 -5833.810673] SLOW spr round 48 (radius: 20) [07:00:26 -5833.810673] SLOW spr round 49 (radius: 25) [07:01:42 -5832.192138] SLOW spr round 50 (radius: 5) [07:02:36 -5832.192138] SLOW spr round 51 (radius: 10) [07:03:28 -5832.192138] SLOW spr round 52 (radius: 15) [07:04:23 -5832.192138] SLOW spr round 53 (radius: 20) [07:05:32 -5832.192138] SLOW spr round 54 (radius: 25) [07:06:47 -5832.192138] Model parameter optimization (eps = 0.100000) [07:06:50] ML tree search #8, logLikelihood: -5832.118335 [07:06:50 -25300.081424] Initial branch length optimization [07:06:51 -20060.198599] Model parameter optimization (eps = 10.000000) [07:07:01 -19932.432982] AUTODETECT spr round 1 (radius: 5) [07:07:47 -13753.670959] AUTODETECT spr round 2 (radius: 10) [07:08:38 -10350.424556] AUTODETECT spr round 3 (radius: 15) [07:09:35 -8424.013795] AUTODETECT spr round 4 (radius: 20) [07:10:42 -7833.711144] AUTODETECT spr round 5 (radius: 25) [07:11:46 -7326.311779] SPR radius for FAST iterations: 25 (autodetect) [07:11:46 -7326.311779] Model parameter optimization (eps = 3.000000) [07:11:59 -7321.218116] FAST spr round 1 (radius: 25) [07:12:54 -6061.896472] FAST spr round 2 (radius: 25) [07:13:44 -5968.543522] FAST spr round 3 (radius: 25) [07:14:33 -5947.681763] FAST spr round 4 (radius: 25) [07:15:21 -5939.065636] FAST spr round 5 (radius: 25) [07:16:08 -5939.065196] Model parameter optimization (eps = 1.000000) [07:16:17 -5936.843061] SLOW spr round 1 (radius: 5) [07:17:07 -5933.631545] SLOW spr round 2 (radius: 5) [07:17:56 -5932.381623] SLOW spr round 3 (radius: 5) [07:18:44 -5932.381409] SLOW spr round 4 (radius: 10) [07:19:35 -5929.858173] SLOW spr round 5 (radius: 5) [07:20:27 -5924.657989] SLOW spr round 6 (radius: 5) [07:21:16 -5924.648814] SLOW spr round 7 (radius: 10) [07:22:07 -5924.648803] SLOW spr round 8 (radius: 15) [07:23:07 -5859.549843] SLOW spr round 9 (radius: 5) [07:24:01 -5851.818872] SLOW spr round 10 (radius: 5) [07:24:50 -5851.818857] SLOW spr round 11 (radius: 10) [07:25:42 -5849.728750] SLOW spr round 12 (radius: 5) [07:26:32 -5849.728680] SLOW spr round 13 (radius: 10) [07:27:23 -5849.728679] SLOW spr round 14 (radius: 15) [07:28:20 -5849.728409] SLOW spr round 15 (radius: 20) [07:29:27 -5847.204454] SLOW spr round 16 (radius: 5) [07:30:21 -5847.204204] SLOW spr round 17 (radius: 10) [07:31:13 -5847.204203] SLOW spr round 18 (radius: 15) [07:32:10 -5846.290298] SLOW spr round 19 (radius: 5) [07:33:02 -5846.290269] SLOW spr round 20 (radius: 10) [07:33:54 -5845.393699] SLOW spr round 21 (radius: 5) [07:34:45 -5845.393376] SLOW spr round 22 (radius: 10) [07:35:36 -5845.393321] SLOW spr round 23 (radius: 15) [07:36:34 -5843.875218] SLOW spr round 24 (radius: 5) [07:37:27 -5843.875113] SLOW spr round 25 (radius: 10) [07:38:18 -5843.875102] SLOW spr round 26 (radius: 15) [07:39:16 -5843.875098] SLOW spr round 27 (radius: 20) [07:40:24 -5843.618223] SLOW spr round 28 (radius: 5) [07:41:18 -5843.472759] SLOW spr round 29 (radius: 5) [07:42:08 -5843.472758] SLOW spr round 30 (radius: 10) [07:42:59 -5843.472758] SLOW spr round 31 (radius: 15) [07:43:57 -5843.472758] SLOW spr round 32 (radius: 20) [07:45:06 -5843.472758] SLOW spr round 33 (radius: 25) [07:46:25 -5790.549792] SLOW spr round 34 (radius: 5) [07:47:21 -5738.345958] SLOW spr round 35 (radius: 5) [07:48:11 -5728.982710] SLOW spr round 36 (radius: 5) [07:49:00 -5728.980728] SLOW spr round 37 (radius: 10) [07:49:50 -5728.980450] SLOW spr round 38 (radius: 15) [07:50:48 -5728.980418] SLOW spr round 39 (radius: 20) [07:51:58 -5728.980415] SLOW spr round 40 (radius: 25) [07:53:17 -5728.899553] Model parameter optimization (eps = 0.100000) [07:53:24] ML tree search #9, logLikelihood: -5728.647338 [07:53:24 -25502.715428] Initial branch length optimization [07:53:25 -20172.315102] Model parameter optimization (eps = 10.000000) [07:53:35 -20046.383906] AUTODETECT spr round 1 (radius: 5) [07:54:21 -14281.955542] AUTODETECT spr round 2 (radius: 10) [07:55:11 -10686.088330] AUTODETECT spr round 3 (radius: 15) [07:56:07 -8931.220836] AUTODETECT spr round 4 (radius: 20) [07:57:11 -7565.145093] AUTODETECT spr round 5 (radius: 25) [07:58:12 -6983.665855] SPR radius for FAST iterations: 25 (autodetect) [07:58:12 -6983.665855] Model parameter optimization (eps = 3.000000) [07:58:24 -6978.348839] FAST spr round 1 (radius: 25) [07:59:19 -5795.202374] FAST spr round 2 (radius: 25) [08:00:08 -5622.134052] FAST spr round 3 (radius: 25) [08:00:57 -5597.154145] FAST spr round 4 (radius: 25) [08:01:45 -5597.151614] Model parameter optimization (eps = 1.000000) [08:01:49 -5596.218869] SLOW spr round 1 (radius: 5) [08:02:38 -5596.014752] SLOW spr round 2 (radius: 5) [08:03:27 -5594.039086] SLOW spr round 3 (radius: 5) [08:04:14 -5594.039015] SLOW spr round 4 (radius: 10) [08:05:06 -5577.834087] SLOW spr round 5 (radius: 5) [08:05:57 -5577.036373] SLOW spr round 6 (radius: 5) [08:06:46 -5575.384381] SLOW spr round 7 (radius: 5) [08:07:33 -5575.384267] SLOW spr round 8 (radius: 10) [08:08:24 -5574.749839] SLOW spr round 9 (radius: 5) [08:09:14 -5574.749838] SLOW spr round 10 (radius: 10) [08:10:05 -5572.982355] SLOW spr round 11 (radius: 5) [08:10:55 -5572.970603] SLOW spr round 12 (radius: 10) [08:11:46 -5572.970602] SLOW spr round 13 (radius: 15) [08:12:42 -5572.941083] SLOW spr round 14 (radius: 20) [08:13:52 -5520.792166] SLOW spr round 15 (radius: 5) [08:14:46 -5455.706746] SLOW spr round 16 (radius: 5) [08:15:36 -5452.499334] SLOW spr round 17 (radius: 5) [08:16:25 -5452.497128] SLOW spr round 18 (radius: 10) [08:17:15 -5452.497098] SLOW spr round 19 (radius: 15) [08:18:11 -5450.148953] SLOW spr round 20 (radius: 5) [08:19:04 -5450.148878] SLOW spr round 21 (radius: 10) [08:19:55 -5448.442517] SLOW spr round 22 (radius: 5) [08:20:44 -5448.442517] SLOW spr round 23 (radius: 10) [08:21:35 -5448.442517] SLOW spr round 24 (radius: 15) [08:22:31 -5448.303419] SLOW spr round 25 (radius: 5) [08:23:23 -5448.303418] SLOW spr round 26 (radius: 10) [08:24:15 -5448.303418] SLOW spr round 27 (radius: 15) [08:25:11 -5446.951850] SLOW spr round 28 (radius: 5) [08:26:04 -5446.951810] SLOW spr round 29 (radius: 10) [08:26:55 -5446.951810] SLOW spr round 30 (radius: 15) [08:27:52 -5446.951810] SLOW spr round 31 (radius: 20) [08:29:02 -5433.522803] SLOW spr round 32 (radius: 5) [08:29:57 -5381.299057] SLOW spr round 33 (radius: 5) [08:30:47 -5379.528323] SLOW spr round 34 (radius: 5) [08:31:34 -5379.527725] SLOW spr round 35 (radius: 10) [08:32:25 -5379.527404] SLOW spr round 36 (radius: 15) [08:33:22 -5376.619987] SLOW spr round 37 (radius: 5) [08:34:15 -5376.619931] SLOW spr round 38 (radius: 10) [08:35:06 -5376.619927] SLOW spr round 39 (radius: 15) [08:36:04 -5376.619927] SLOW spr round 40 (radius: 20) [08:37:14 -5376.619927] SLOW spr round 41 (radius: 25) [08:38:37 -5371.394001] SLOW spr round 42 (radius: 5) [08:39:31 -5370.222129] SLOW spr round 43 (radius: 5) [08:40:21 -5370.222122] SLOW spr round 44 (radius: 10) [08:41:12 -5364.679769] SLOW spr round 45 (radius: 5) [08:42:02 -5364.326811] SLOW spr round 46 (radius: 5) [08:42:49 -5364.326715] SLOW spr round 47 (radius: 10) [08:43:40 -5364.326715] SLOW spr round 48 (radius: 15) [08:44:38 -5364.326715] SLOW spr round 49 (radius: 20) [08:45:48 -5364.326715] SLOW spr round 50 (radius: 25) [08:47:11 -5362.389431] SLOW spr round 51 (radius: 5) [08:48:06 -5360.591238] SLOW spr round 52 (radius: 5) [08:48:56 -5360.153323] SLOW spr round 53 (radius: 5) [08:49:44 -5359.126774] SLOW spr round 54 (radius: 5) [08:50:32 -5359.123371] SLOW spr round 55 (radius: 10) [08:51:22 -5359.121244] SLOW spr round 56 (radius: 15) [08:52:20 -5359.121238] SLOW spr round 57 (radius: 20) [08:53:30 -5359.121238] SLOW spr round 58 (radius: 25) [08:54:52 -5359.121238] Model parameter optimization (eps = 0.100000) [08:54:59] ML tree search #10, logLikelihood: -5358.935021 [08:54:59 -25346.124280] Initial branch length optimization [08:55:00 -20011.713976] Model parameter optimization (eps = 10.000000) [08:55:11 -19881.275774] AUTODETECT spr round 1 (radius: 5) [08:55:57 -13742.277319] AUTODETECT spr round 2 (radius: 10) [08:56:48 -10299.936932] AUTODETECT spr round 3 (radius: 15) [08:57:45 -8183.256827] AUTODETECT spr round 4 (radius: 20) [08:58:52 -7208.150454] AUTODETECT spr round 5 (radius: 25) [08:59:53 -6825.989454] SPR radius for FAST iterations: 25 (autodetect) [08:59:53 -6825.989454] Model parameter optimization (eps = 3.000000) [09:00:04 -6819.689265] FAST spr round 1 (radius: 25) [09:00:59 -5824.243162] FAST spr round 2 (radius: 25) [09:01:48 -5708.771855] FAST spr round 3 (radius: 25) [09:02:37 -5696.919857] FAST spr round 4 (radius: 25) [09:03:24 -5694.723551] FAST spr round 5 (radius: 25) [09:04:11 -5694.536374] FAST spr round 6 (radius: 25) [09:04:57 -5694.536362] Model parameter optimization (eps = 1.000000) [09:05:04 -5693.980989] SLOW spr round 1 (radius: 5) [09:05:53 -5693.624732] SLOW spr round 2 (radius: 5) [09:06:41 -5692.783370] SLOW spr round 3 (radius: 5) [09:07:29 -5692.782153] SLOW spr round 4 (radius: 10) [09:08:19 -5691.976925] SLOW spr round 5 (radius: 5) [09:09:09 -5688.870022] SLOW spr round 6 (radius: 5) [09:09:57 -5688.868313] SLOW spr round 7 (radius: 10) [09:10:48 -5688.868154] SLOW spr round 8 (radius: 15) [09:11:43 -5663.275408] SLOW spr round 9 (radius: 5) [09:12:36 -5663.269656] SLOW spr round 10 (radius: 10) [09:13:27 -5662.194245] SLOW spr round 11 (radius: 5) [09:14:17 -5661.969710] SLOW spr round 12 (radius: 5) [09:15:05 -5661.969710] SLOW spr round 13 (radius: 10) [09:15:55 -5661.735587] SLOW spr round 14 (radius: 5) [09:16:45 -5661.735468] SLOW spr round 15 (radius: 10) [09:17:36 -5661.735411] SLOW spr round 16 (radius: 15) [09:18:34 -5636.479808] SLOW spr round 17 (radius: 5) [09:19:27 -5636.265714] SLOW spr round 18 (radius: 5) [09:20:16 -5634.896403] SLOW spr round 19 (radius: 5) [09:21:04 -5634.896400] SLOW spr round 20 (radius: 10) [09:21:55 -5634.896400] SLOW spr round 21 (radius: 15) [09:22:52 -5607.476948] SLOW spr round 22 (radius: 5) [09:23:45 -5605.507287] SLOW spr round 23 (radius: 5) [09:24:33 -5605.507285] SLOW spr round 24 (radius: 10) [09:25:24 -5605.507285] SLOW spr round 25 (radius: 15) [09:26:21 -5605.507285] SLOW spr round 26 (radius: 20) [09:27:30 -5591.435630] SLOW spr round 27 (radius: 5) [09:28:24 -5589.711987] SLOW spr round 28 (radius: 5) [09:29:13 -5589.709219] SLOW spr round 29 (radius: 10) [09:30:04 -5589.708991] SLOW spr round 30 (radius: 15) [09:31:01 -5572.483091] SLOW spr round 31 (radius: 5) [09:31:54 -5572.483090] SLOW spr round 32 (radius: 10) [09:32:45 -5572.483090] SLOW spr round 33 (radius: 15) [09:33:41 -5572.483090] SLOW spr round 34 (radius: 20) [09:34:51 -5561.489008] SLOW spr round 35 (radius: 5) [09:35:47 -5491.944954] SLOW spr round 36 (radius: 5) [09:36:38 -5478.223412] SLOW spr round 37 (radius: 5) [09:37:26 -5477.182596] SLOW spr round 38 (radius: 5) [09:38:14 -5477.182373] SLOW spr round 39 (radius: 10) [09:39:05 -5477.182274] SLOW spr round 40 (radius: 15) [09:40:02 -5477.182217] SLOW spr round 41 (radius: 20) [09:41:10 -5477.182184] SLOW spr round 42 (radius: 25) [09:42:30 -5469.709242] SLOW spr round 43 (radius: 5) [09:43:24 -5452.381730] SLOW spr round 44 (radius: 5) [09:44:14 -5452.381722] SLOW spr round 45 (radius: 10) [09:45:05 -5450.672776] SLOW spr round 46 (radius: 5) [09:45:54 -5450.672774] SLOW spr round 47 (radius: 10) [09:46:45 -5450.672773] SLOW spr round 48 (radius: 15) [09:47:41 -5450.672773] SLOW spr round 49 (radius: 20) [09:48:49 -5450.672773] SLOW spr round 50 (radius: 25) [09:50:11 -5379.184814] SLOW spr round 51 (radius: 5) [09:51:06 -5372.858795] SLOW spr round 52 (radius: 5) [09:51:55 -5372.555214] SLOW spr round 53 (radius: 5) [09:52:43 -5372.555208] SLOW spr round 54 (radius: 10) [09:53:33 -5372.500167] SLOW spr round 55 (radius: 15) [09:54:29 -5372.500167] SLOW spr round 56 (radius: 20) [09:55:37 -5370.526786] SLOW spr round 57 (radius: 5) [09:56:31 -5369.906687] SLOW spr round 58 (radius: 5) [09:57:20 -5369.906659] SLOW spr round 59 (radius: 10) [09:58:11 -5369.906655] SLOW spr round 60 (radius: 15) [09:59:07 -5369.906654] SLOW spr round 61 (radius: 20) [10:00:16 -5369.906654] SLOW spr round 62 (radius: 25) [10:01:36 -5369.906654] Model parameter optimization (eps = 0.100000) [10:01:41] ML tree search #11, logLikelihood: -5369.403153 [10:01:42 -25261.904550] Initial branch length optimization [10:01:42 -20072.655543] Model parameter optimization (eps = 10.000000) [10:01:52 -19942.612897] AUTODETECT spr round 1 (radius: 5) [10:02:38 -14386.808009] AUTODETECT spr round 2 (radius: 10) [10:03:29 -10501.490910] AUTODETECT spr round 3 (radius: 15) [10:04:24 -8444.464323] AUTODETECT spr round 4 (radius: 20) [10:05:30 -7763.513318] AUTODETECT spr round 5 (radius: 25) [10:06:36 -6889.269960] SPR radius for FAST iterations: 25 (autodetect) [10:06:36 -6889.269960] Model parameter optimization (eps = 3.000000) [10:06:46 -6885.085203] FAST spr round 1 (radius: 25) [10:07:40 -5830.491520] FAST spr round 2 (radius: 25) [10:08:31 -5687.220959] FAST spr round 3 (radius: 25) [10:09:21 -5639.408038] FAST spr round 4 (radius: 25) [10:10:09 -5638.322129] FAST spr round 5 (radius: 25) [10:10:56 -5638.321710] Model parameter optimization (eps = 1.000000) [10:11:03 -5637.657384] SLOW spr round 1 (radius: 5) [10:11:52 -5636.970195] SLOW spr round 2 (radius: 5) [10:12:40 -5636.969340] SLOW spr round 3 (radius: 10) [10:13:30 -5636.167210] SLOW spr round 4 (radius: 5) [10:14:20 -5635.572429] SLOW spr round 5 (radius: 5) [10:15:08 -5635.571796] SLOW spr round 6 (radius: 10) [10:15:59 -5635.571707] SLOW spr round 7 (radius: 15) [10:16:54 -5629.740119] SLOW spr round 8 (radius: 5) [10:17:47 -5628.615042] SLOW spr round 9 (radius: 5) [10:18:36 -5628.614031] SLOW spr round 10 (radius: 10) [10:19:27 -5628.613794] SLOW spr round 11 (radius: 15) [10:20:21 -5628.613649] SLOW spr round 12 (radius: 20) [10:21:23 -5628.021116] SLOW spr round 13 (radius: 5) [10:22:17 -5626.606586] SLOW spr round 14 (radius: 5) [10:23:06 -5626.606197] SLOW spr round 15 (radius: 10) [10:23:57 -5626.606171] SLOW spr round 16 (radius: 15) [10:24:52 -5626.606161] SLOW spr round 17 (radius: 20) [10:25:53 -5626.157593] SLOW spr round 18 (radius: 5) [10:26:47 -5626.157416] SLOW spr round 19 (radius: 10) [10:27:39 -5625.255584] SLOW spr round 20 (radius: 5) [10:28:29 -5625.255580] SLOW spr round 21 (radius: 10) [10:29:20 -5625.255576] SLOW spr round 22 (radius: 15) [10:30:15 -5625.255576] SLOW spr round 23 (radius: 20) [10:31:16 -5625.206534] SLOW spr round 24 (radius: 25) [10:32:26 -5618.928167] SLOW spr round 25 (radius: 5) [10:33:21 -5618.439108] SLOW spr round 26 (radius: 5) [10:34:11 -5618.439071] SLOW spr round 27 (radius: 10) [10:35:02 -5618.439052] SLOW spr round 28 (radius: 15) [10:35:56 -5618.439039] SLOW spr round 29 (radius: 20) [10:36:59 -5618.002902] SLOW spr round 30 (radius: 5) [10:37:53 -5618.002831] SLOW spr round 31 (radius: 10) [10:38:44 -5618.002823] SLOW spr round 32 (radius: 15) [10:39:39 -5618.002819] SLOW spr round 33 (radius: 20) [10:40:42 -5618.002816] SLOW spr round 34 (radius: 25) [10:41:53 -5615.663332] SLOW spr round 35 (radius: 5) [10:42:47 -5615.660847] SLOW spr round 36 (radius: 10) [10:43:39 -5615.659990] SLOW spr round 37 (radius: 15) [10:44:34 -5615.659385] SLOW spr round 38 (radius: 20) [10:45:39 -5598.858656] SLOW spr round 39 (radius: 5) [10:46:34 -5591.270498] SLOW spr round 40 (radius: 5) [10:47:23 -5591.269503] SLOW spr round 41 (radius: 10) [10:48:14 -5591.268769] SLOW spr round 42 (radius: 15) [10:49:10 -5591.268219] SLOW spr round 43 (radius: 20) [10:50:15 -5579.417495] SLOW spr round 44 (radius: 5) [10:51:09 -5578.518665] SLOW spr round 45 (radius: 5) [10:51:58 -5578.518581] SLOW spr round 46 (radius: 10) [10:52:49 -5578.518535] SLOW spr round 47 (radius: 15) [10:53:44 -5578.518506] SLOW spr round 48 (radius: 20) [10:54:48 -5578.518487] SLOW spr round 49 (radius: 25) [10:56:02 -5574.367155] SLOW spr round 50 (radius: 5) [10:56:56 -5573.832734] SLOW spr round 51 (radius: 5) [10:57:46 -5573.570455] SLOW spr round 52 (radius: 5) [10:58:34 -5573.570106] SLOW spr round 53 (radius: 10) [10:59:25 -5573.570099] SLOW spr round 54 (radius: 15) [11:00:20 -5573.570094] SLOW spr round 55 (radius: 20) [11:01:24 -5571.442052] SLOW spr round 56 (radius: 5) [11:02:17 -5571.440538] SLOW spr round 57 (radius: 10) [11:03:08 -5571.440493] SLOW spr round 58 (radius: 15) [11:04:03 -5571.440479] SLOW spr round 59 (radius: 20) [11:05:07 -5571.440470] SLOW spr round 60 (radius: 25) [11:06:20 -5571.389248] Model parameter optimization (eps = 0.100000) [11:06:31] ML tree search #12, logLikelihood: -5570.291978 [11:06:31 -25154.205571] Initial branch length optimization [11:06:32 -19909.537753] Model parameter optimization (eps = 10.000000) [11:06:44 -19781.784090] AUTODETECT spr round 1 (radius: 5) [11:07:32 -13986.347585] AUTODETECT spr round 2 (radius: 10) [11:08:22 -10729.679810] AUTODETECT spr round 3 (radius: 15) [11:09:18 -8906.138605] AUTODETECT spr round 4 (radius: 20) [11:10:19 -8004.571163] AUTODETECT spr round 5 (radius: 25) [11:11:29 -7460.769379] SPR radius for FAST iterations: 25 (autodetect) [11:11:29 -7460.769379] Model parameter optimization (eps = 3.000000) [11:11:39 -7453.557997] FAST spr round 1 (radius: 25) [11:12:34 -6020.236547] FAST spr round 2 (radius: 25) [11:13:24 -5903.534709] FAST spr round 3 (radius: 25) [11:14:13 -5898.041775] FAST spr round 4 (radius: 25) [11:15:00 -5897.694780] FAST spr round 5 (radius: 25) [11:15:48 -5897.694617] Model parameter optimization (eps = 1.000000) [11:15:53 -5897.149090] SLOW spr round 1 (radius: 5) [11:16:43 -5896.312321] SLOW spr round 2 (radius: 5) [11:17:31 -5896.311926] SLOW spr round 3 (radius: 10) [11:18:22 -5890.260289] SLOW spr round 4 (radius: 5) [11:19:15 -5879.784810] SLOW spr round 5 (radius: 5) [11:20:04 -5878.862225] SLOW spr round 6 (radius: 5) [11:20:53 -5878.180906] SLOW spr round 7 (radius: 5) [11:21:42 -5878.178278] SLOW spr round 8 (radius: 10) [11:22:33 -5877.023607] SLOW spr round 9 (radius: 5) [11:23:23 -5877.023456] SLOW spr round 10 (radius: 10) [11:24:14 -5877.023417] SLOW spr round 11 (radius: 15) [11:25:11 -5871.443429] SLOW spr round 12 (radius: 5) [11:26:05 -5869.943988] SLOW spr round 13 (radius: 5) [11:26:54 -5869.943866] SLOW spr round 14 (radius: 10) [11:27:45 -5869.943850] SLOW spr round 15 (radius: 15) [11:28:42 -5869.907637] SLOW spr round 16 (radius: 20) [11:29:49 -5864.461988] SLOW spr round 17 (radius: 5) [11:30:44 -5860.417419] SLOW spr round 18 (radius: 5) [11:31:33 -5860.417405] SLOW spr round 19 (radius: 10) [11:32:24 -5860.417382] SLOW spr round 20 (radius: 15) [11:33:20 -5859.078491] SLOW spr round 21 (radius: 5) [11:34:13 -5859.078228] SLOW spr round 22 (radius: 10) [11:35:04 -5858.705150] SLOW spr round 23 (radius: 5) [11:35:55 -5858.704187] SLOW spr round 24 (radius: 10) [11:36:46 -5858.703945] SLOW spr round 25 (radius: 15) [11:37:43 -5858.703943] SLOW spr round 26 (radius: 20) [11:38:48 -5858.703943] SLOW spr round 27 (radius: 25) [11:40:02 -5764.773085] SLOW spr round 28 (radius: 5) [11:40:58 -5733.591460] SLOW spr round 29 (radius: 5) [11:41:48 -5733.591233] SLOW spr round 30 (radius: 10) [11:42:39 -5732.579121] SLOW spr round 31 (radius: 5) [11:43:30 -5731.533326] SLOW spr round 32 (radius: 5) [11:44:19 -5731.533048] SLOW spr round 33 (radius: 10) [11:45:10 -5730.582803] SLOW spr round 34 (radius: 5) [11:46:00 -5730.582803] SLOW spr round 35 (radius: 10) [11:46:51 -5730.582803] SLOW spr round 36 (radius: 15) [11:47:47 -5726.261405] SLOW spr round 37 (radius: 5) [11:48:40 -5726.158365] SLOW spr round 38 (radius: 5) [11:49:29 -5726.158362] SLOW spr round 39 (radius: 10) [11:50:20 -5724.737601] SLOW spr round 40 (radius: 5) [11:51:11 -5724.497975] SLOW spr round 41 (radius: 5) [11:52:00 -5724.497974] SLOW spr round 42 (radius: 10) [11:52:51 -5724.497970] SLOW spr round 43 (radius: 15) [11:53:46 -5724.497970] SLOW spr round 44 (radius: 20) [11:54:49 -5724.371903] SLOW spr round 45 (radius: 5) [11:55:43 -5724.371778] SLOW spr round 46 (radius: 10) [11:56:35 -5723.864183] SLOW spr round 47 (radius: 5) [11:57:26 -5723.584059] SLOW spr round 48 (radius: 5) [11:58:14 -5723.581285] SLOW spr round 49 (radius: 10) [11:59:05 -5723.580614] SLOW spr round 50 (radius: 15) [12:00:01 -5723.580473] SLOW spr round 51 (radius: 20) [12:01:04 -5723.334706] SLOW spr round 52 (radius: 5) [12:01:58 -5723.334661] SLOW spr round 53 (radius: 10) [12:02:50 -5723.334656] SLOW spr round 54 (radius: 15) [12:03:45 -5723.334655] SLOW spr round 55 (radius: 20) [12:04:48 -5723.334655] SLOW spr round 56 (radius: 25) [12:05:57 -5722.883480] SLOW spr round 57 (radius: 5) [12:06:52 -5722.883476] SLOW spr round 58 (radius: 10) [12:07:44 -5722.883476] SLOW spr round 59 (radius: 15) [12:08:41 -5718.150859] SLOW spr round 60 (radius: 5) [12:09:33 -5718.150851] SLOW spr round 61 (radius: 10) [12:10:25 -5718.150851] SLOW spr round 62 (radius: 15) [12:11:21 -5718.150851] SLOW spr round 63 (radius: 20) [12:12:24 -5718.150851] SLOW spr round 64 (radius: 25) [12:13:33 -5718.150849] Model parameter optimization (eps = 0.100000) [12:13:45] ML tree search #13, logLikelihood: -5714.432344 [12:13:45 -25361.440963] Initial branch length optimization [12:13:45 -20013.601338] Model parameter optimization (eps = 10.000000) [12:14:00 -19887.573725] AUTODETECT spr round 1 (radius: 5) [12:14:47 -14179.359996] AUTODETECT spr round 2 (radius: 10) [12:15:39 -10714.134793] AUTODETECT spr round 3 (radius: 15) [12:16:34 -9410.713960] AUTODETECT spr round 4 (radius: 20) [12:17:40 -7851.416461] AUTODETECT spr round 5 (radius: 25) [12:18:48 -6931.580540] SPR radius for FAST iterations: 25 (autodetect) [12:18:48 -6931.580540] Model parameter optimization (eps = 3.000000) [12:19:01 -6918.326506] FAST spr round 1 (radius: 25) [12:19:55 -5826.345865] FAST spr round 2 (radius: 25) [12:20:45 -5664.246261] FAST spr round 3 (radius: 25) [12:21:35 -5648.340014] FAST spr round 4 (radius: 25) [12:22:23 -5647.751838] FAST spr round 5 (radius: 25) [12:23:10 -5647.750557] Model parameter optimization (eps = 1.000000) [12:23:19 -5645.440149] SLOW spr round 1 (radius: 5) [12:24:09 -5644.946806] SLOW spr round 2 (radius: 5) [12:24:57 -5644.946260] SLOW spr round 3 (radius: 10) [12:25:49 -5642.329817] SLOW spr round 4 (radius: 5) [12:26:40 -5640.423160] SLOW spr round 5 (radius: 5) [12:27:29 -5640.423003] SLOW spr round 6 (radius: 10) [12:28:19 -5640.422998] SLOW spr round 7 (radius: 15) [12:29:15 -5590.197240] SLOW spr round 8 (radius: 5) [12:30:10 -5568.205157] SLOW spr round 9 (radius: 5) [12:30:59 -5568.205062] SLOW spr round 10 (radius: 10) [12:31:49 -5568.205061] SLOW spr round 11 (radius: 15) [12:32:46 -5568.205061] SLOW spr round 12 (radius: 20) [12:33:55 -5525.310558] SLOW spr round 13 (radius: 5) [12:34:50 -5498.562530] SLOW spr round 14 (radius: 5) [12:35:42 -5469.672165] SLOW spr round 15 (radius: 5) [12:36:30 -5469.670988] SLOW spr round 16 (radius: 10) [12:37:21 -5465.069854] SLOW spr round 17 (radius: 5) [12:38:12 -5465.068329] SLOW spr round 18 (radius: 10) [12:39:03 -5465.068289] SLOW spr round 19 (radius: 15) [12:39:58 -5444.123359] SLOW spr round 20 (radius: 5) [12:40:52 -5431.944689] SLOW spr round 21 (radius: 5) [12:41:41 -5431.944514] SLOW spr round 22 (radius: 10) [12:42:32 -5431.944512] SLOW spr round 23 (radius: 15) [12:43:27 -5431.944512] SLOW spr round 24 (radius: 20) [12:44:31 -5431.944512] SLOW spr round 25 (radius: 25) [12:45:44 -5401.729019] SLOW spr round 26 (radius: 5) [12:46:38 -5401.030787] SLOW spr round 27 (radius: 5) [12:47:28 -5401.030692] SLOW spr round 28 (radius: 10) [12:48:19 -5397.887645] SLOW spr round 29 (radius: 5) [12:49:10 -5397.885320] SLOW spr round 30 (radius: 10) [12:50:00 -5397.885180] SLOW spr round 31 (radius: 15) [12:50:55 -5397.854858] SLOW spr round 32 (radius: 20) [12:52:00 -5395.928667] SLOW spr round 33 (radius: 5) [12:52:55 -5394.644124] SLOW spr round 34 (radius: 5) [12:53:44 -5394.644123] SLOW spr round 35 (radius: 10) [12:54:34 -5394.644123] SLOW spr round 36 (radius: 15) [12:55:29 -5394.644116] SLOW spr round 37 (radius: 20) [12:56:34 -5394.644116] SLOW spr round 38 (radius: 25) [12:57:47 -5394.644116] Model parameter optimization (eps = 0.100000) [12:57:55] ML tree search #14, logLikelihood: -5394.040586 [12:57:55 -25405.924919] Initial branch length optimization [12:57:55 -20056.867079] Model parameter optimization (eps = 10.000000) [12:58:07 -19926.120994] AUTODETECT spr round 1 (radius: 5) [12:58:53 -14254.717688] AUTODETECT spr round 2 (radius: 10) [12:59:45 -10333.102267] AUTODETECT spr round 3 (radius: 15) [13:00:41 -8914.492448] AUTODETECT spr round 4 (radius: 20) [13:01:44 -7562.512533] AUTODETECT spr round 5 (radius: 25) [13:02:47 -6969.372571] SPR radius for FAST iterations: 25 (autodetect) [13:02:47 -6969.372571] Model parameter optimization (eps = 3.000000) [13:02:59 -6964.905605] FAST spr round 1 (radius: 25) [13:03:53 -5826.444518] FAST spr round 2 (radius: 25) [13:04:45 -5771.234203] FAST spr round 3 (radius: 25) [13:05:35 -5768.672572] FAST spr round 4 (radius: 25) [13:06:24 -5766.016749] FAST spr round 5 (radius: 25) [13:07:12 -5765.063135] FAST spr round 6 (radius: 25) [13:08:00 -5765.063030] Model parameter optimization (eps = 1.000000) [13:08:09 -5762.080959] SLOW spr round 1 (radius: 5) [13:08:59 -5760.825437] SLOW spr round 2 (radius: 5) [13:09:47 -5760.824225] SLOW spr round 3 (radius: 10) [13:10:38 -5760.149266] SLOW spr round 4 (radius: 5) [13:11:30 -5759.560569] SLOW spr round 5 (radius: 5) [13:12:18 -5759.560539] SLOW spr round 6 (radius: 10) [13:13:09 -5759.560518] SLOW spr round 7 (radius: 15) [13:14:05 -5751.026074] SLOW spr round 8 (radius: 5) [13:15:00 -5749.262168] SLOW spr round 9 (radius: 5) [13:15:50 -5748.498011] SLOW spr round 10 (radius: 5) [13:16:38 -5748.497986] SLOW spr round 11 (radius: 10) [13:17:29 -5726.340291] SLOW spr round 12 (radius: 5) [13:18:19 -5726.340245] SLOW spr round 13 (radius: 10) [13:19:10 -5726.340245] SLOW spr round 14 (radius: 15) [13:20:07 -5726.340245] SLOW spr round 15 (radius: 20) [13:21:17 -5667.738160] SLOW spr round 16 (radius: 5) [13:22:13 -5623.354454] SLOW spr round 17 (radius: 5) [13:23:02 -5623.354411] SLOW spr round 18 (radius: 10) [13:23:53 -5623.354410] SLOW spr round 19 (radius: 15) [13:24:49 -5621.663520] SLOW spr round 20 (radius: 5) [13:25:43 -5621.661641] SLOW spr round 21 (radius: 10) [13:26:34 -5621.102115] SLOW spr round 22 (radius: 5) [13:27:25 -5621.102031] SLOW spr round 23 (radius: 10) [13:28:16 -5620.641859] SLOW spr round 24 (radius: 5) [13:29:06 -5620.641854] SLOW spr round 25 (radius: 10) [13:29:57 -5620.641854] SLOW spr round 26 (radius: 15) [13:30:53 -5619.864304] SLOW spr round 27 (radius: 5) [13:31:46 -5619.864283] SLOW spr round 28 (radius: 10) [13:32:38 -5619.415971] SLOW spr round 29 (radius: 5) [13:33:28 -5619.415945] SLOW spr round 30 (radius: 10) [13:34:19 -5619.415945] SLOW spr round 31 (radius: 15) [13:35:15 -5619.415945] SLOW spr round 32 (radius: 20) [13:36:25 -5607.018347] SLOW spr round 33 (radius: 5) [13:37:20 -5594.007858] SLOW spr round 34 (radius: 5) [13:38:10 -5593.975811] SLOW spr round 35 (radius: 10) [13:39:01 -5593.974413] SLOW spr round 36 (radius: 15) [13:39:57 -5593.968153] SLOW spr round 37 (radius: 20) [13:41:04 -5593.510095] SLOW spr round 38 (radius: 5) [13:41:59 -5593.509952] SLOW spr round 39 (radius: 10) [13:42:50 -5593.509952] SLOW spr round 40 (radius: 15) [13:43:47 -5592.593461] SLOW spr round 41 (radius: 5) [13:44:40 -5592.592821] SLOW spr round 42 (radius: 10) [13:45:31 -5592.592753] SLOW spr round 43 (radius: 15) [13:46:27 -5592.592745] SLOW spr round 44 (radius: 20) [13:47:35 -5592.592744] SLOW spr round 45 (radius: 25) [13:48:53 -5518.346803] SLOW spr round 46 (radius: 5) [13:49:48 -5516.312642] SLOW spr round 47 (radius: 5) [13:50:38 -5516.179440] SLOW spr round 48 (radius: 5) [13:51:26 -5516.177778] SLOW spr round 49 (radius: 10) [13:52:18 -5509.862890] SLOW spr round 50 (radius: 5) [13:53:08 -5509.779116] SLOW spr round 51 (radius: 10) [13:53:59 -5509.779115] SLOW spr round 52 (radius: 15) [13:54:55 -5495.226276] SLOW spr round 53 (radius: 5) [13:55:48 -5491.457227] SLOW spr round 54 (radius: 5) [13:56:37 -5491.457223] SLOW spr round 55 (radius: 10) [13:57:28 -5489.025378] SLOW spr round 56 (radius: 5) [13:58:18 -5489.025177] SLOW spr round 57 (radius: 10) [13:59:09 -5489.025164] SLOW spr round 58 (radius: 15) [14:00:04 -5485.079375] SLOW spr round 59 (radius: 5) [14:00:56 -5485.079375] SLOW spr round 60 (radius: 10) [14:01:48 -5482.488080] SLOW spr round 61 (radius: 5) [14:02:38 -5482.488079] SLOW spr round 62 (radius: 10) [14:03:29 -5482.488079] SLOW spr round 63 (radius: 15) [14:04:24 -5482.488079] SLOW spr round 64 (radius: 20) [14:05:28 -5481.969126] SLOW spr round 65 (radius: 5) [14:06:21 -5481.830849] SLOW spr round 66 (radius: 5) [14:07:10 -5481.830676] SLOW spr round 67 (radius: 10) [14:08:01 -5481.830675] SLOW spr round 68 (radius: 15) [14:08:56 -5479.941880] SLOW spr round 69 (radius: 5) [14:09:49 -5479.941880] SLOW spr round 70 (radius: 10) [14:10:40 -5479.941880] SLOW spr round 71 (radius: 15) [14:11:35 -5479.941880] SLOW spr round 72 (radius: 20) [14:12:38 -5479.941880] SLOW spr round 73 (radius: 25) [14:13:50 -5479.776386] SLOW spr round 74 (radius: 5) [14:14:43 -5479.776386] SLOW spr round 75 (radius: 10) [14:15:36 -5478.816610] SLOW spr round 76 (radius: 5) [14:16:25 -5478.816610] SLOW spr round 77 (radius: 10) [14:17:17 -5478.816610] SLOW spr round 78 (radius: 15) [14:18:11 -5478.816610] SLOW spr round 79 (radius: 20) [14:19:15 -5478.816610] SLOW spr round 80 (radius: 25) [14:20:26 -5478.816610] Model parameter optimization (eps = 0.100000) [14:20:34] ML tree search #15, logLikelihood: -5478.703852 [14:20:34 -25210.920068] Initial branch length optimization [14:20:34 -19923.610985] Model parameter optimization (eps = 10.000000) [14:20:46 -19783.033398] AUTODETECT spr round 1 (radius: 5) [14:21:33 -14306.522816] AUTODETECT spr round 2 (radius: 10) [14:22:24 -10634.730038] AUTODETECT spr round 3 (radius: 15) [14:23:21 -8629.875366] AUTODETECT spr round 4 (radius: 20) [14:24:28 -7314.856273] AUTODETECT spr round 5 (radius: 25) [14:25:27 -6891.181249] SPR radius for FAST iterations: 25 (autodetect) [14:25:27 -6891.181249] Model parameter optimization (eps = 3.000000) [14:25:43 -6879.330789] FAST spr round 1 (radius: 25) [14:26:36 -5992.883233] FAST spr round 2 (radius: 25) [14:27:25 -5929.635816] FAST spr round 3 (radius: 25) [14:28:14 -5903.313398] FAST spr round 4 (radius: 25) [14:29:02 -5898.626625] FAST spr round 5 (radius: 25) [14:29:49 -5898.626515] Model parameter optimization (eps = 1.000000) [14:29:53 -5897.842925] SLOW spr round 1 (radius: 5) [14:30:43 -5897.726239] SLOW spr round 2 (radius: 5) [14:31:31 -5897.725941] SLOW spr round 3 (radius: 10) [14:32:21 -5896.580295] SLOW spr round 4 (radius: 5) [14:33:12 -5895.670714] SLOW spr round 5 (radius: 5) [14:34:01 -5895.670705] SLOW spr round 6 (radius: 10) [14:34:51 -5895.670704] SLOW spr round 7 (radius: 15) [14:35:47 -5847.998141] SLOW spr round 8 (radius: 5) [14:36:42 -5762.737560] SLOW spr round 9 (radius: 5) [14:37:33 -5689.734961] SLOW spr round 10 (radius: 5) [14:38:23 -5673.481778] SLOW spr round 11 (radius: 5) [14:39:11 -5669.851036] SLOW spr round 12 (radius: 5) [14:40:00 -5669.849854] SLOW spr round 13 (radius: 10) [14:40:50 -5639.356650] SLOW spr round 14 (radius: 5) [14:41:43 -5622.032056] SLOW spr round 15 (radius: 5) [14:42:32 -5609.082702] SLOW spr round 16 (radius: 5) [14:43:20 -5609.081379] SLOW spr round 17 (radius: 10) [14:44:10 -5609.081283] SLOW spr round 18 (radius: 15) [14:45:05 -5608.107847] SLOW spr round 19 (radius: 5) [14:45:58 -5608.031666] SLOW spr round 20 (radius: 10) [14:46:49 -5608.031659] SLOW spr round 21 (radius: 15) [14:47:43 -5608.031659] SLOW spr round 22 (radius: 20) [14:48:46 -5608.031659] SLOW spr round 23 (radius: 25) [14:49:53 -5606.687452] SLOW spr round 24 (radius: 5) [14:50:47 -5602.647005] SLOW spr round 25 (radius: 5) [14:51:37 -5601.956114] SLOW spr round 26 (radius: 5) [14:52:25 -5601.955467] SLOW spr round 27 (radius: 10) [14:53:15 -5601.955269] SLOW spr round 28 (radius: 15) [14:54:10 -5601.072853] SLOW spr round 29 (radius: 5) [14:55:03 -5601.072833] SLOW spr round 30 (radius: 10) [14:55:53 -5601.072827] SLOW spr round 31 (radius: 15) [14:56:48 -5601.072822] SLOW spr round 32 (radius: 20) [14:57:50 -5601.015602] SLOW spr round 33 (radius: 25) [14:58:58 -5560.556523] SLOW spr round 34 (radius: 5) [14:59:53 -5556.924357] SLOW spr round 35 (radius: 5) [15:00:42 -5556.924337] SLOW spr round 36 (radius: 10) [15:01:32 -5556.924330] SLOW spr round 37 (radius: 15) [15:02:26 -5556.924329] SLOW spr round 38 (radius: 20) [15:03:27 -5556.924329] SLOW spr round 39 (radius: 25) [15:04:35 -5556.924329] Model parameter optimization (eps = 0.100000) [15:04:39] ML tree search #16, logLikelihood: -5556.873923 [15:04:39 -25323.448394] Initial branch length optimization [15:04:40 -19954.750179] Model parameter optimization (eps = 10.000000) [15:04:49 -19825.821089] AUTODETECT spr round 1 (radius: 5) [15:05:35 -14057.457812] AUTODETECT spr round 2 (radius: 10) [15:06:27 -10334.356155] AUTODETECT spr round 3 (radius: 15) [15:07:23 -8717.678215] AUTODETECT spr round 4 (radius: 20) [15:08:30 -7567.035970] AUTODETECT spr round 5 (radius: 25) [15:09:31 -7163.401051] SPR radius for FAST iterations: 25 (autodetect) [15:09:31 -7163.401051] Model parameter optimization (eps = 3.000000) [15:09:41 -7153.815091] FAST spr round 1 (radius: 25) [15:10:34 -6034.285546] FAST spr round 2 (radius: 25) [15:11:23 -5840.336976] FAST spr round 3 (radius: 25) [15:12:14 -5760.387998] FAST spr round 4 (radius: 25) [15:13:03 -5756.787276] FAST spr round 5 (radius: 25) [15:13:51 -5756.786565] Model parameter optimization (eps = 1.000000) [15:14:00 -5755.712882] SLOW spr round 1 (radius: 5) [15:14:50 -5753.820584] SLOW spr round 2 (radius: 5) [15:15:38 -5753.820027] SLOW spr round 3 (radius: 10) [15:16:29 -5752.307009] SLOW spr round 4 (radius: 5) [15:17:20 -5751.328439] SLOW spr round 5 (radius: 5) [15:18:10 -5751.328165] SLOW spr round 6 (radius: 10) [15:19:01 -5750.059613] SLOW spr round 7 (radius: 5) [15:19:51 -5750.059557] SLOW spr round 8 (radius: 10) [15:20:42 -5748.881300] SLOW spr round 9 (radius: 5) [15:21:32 -5747.744979] SLOW spr round 10 (radius: 5) [15:22:20 -5747.744974] SLOW spr round 11 (radius: 10) [15:23:11 -5747.744970] SLOW spr round 12 (radius: 15) [15:24:07 -5745.527774] SLOW spr round 13 (radius: 5) [15:25:01 -5742.943957] SLOW spr round 14 (radius: 5) [15:25:51 -5741.811251] SLOW spr round 15 (radius: 5) [15:26:40 -5741.582275] SLOW spr round 16 (radius: 5) [15:27:28 -5741.581634] SLOW spr round 17 (radius: 10) [15:28:20 -5737.043271] SLOW spr round 18 (radius: 5) [15:29:12 -5735.447574] SLOW spr round 19 (radius: 5) [15:30:00 -5735.447546] SLOW spr round 20 (radius: 10) [15:30:51 -5734.880735] SLOW spr round 21 (radius: 5) [15:31:42 -5734.647139] SLOW spr round 22 (radius: 5) [15:32:30 -5734.645493] SLOW spr round 23 (radius: 10) [15:33:21 -5734.129877] SLOW spr round 24 (radius: 5) [15:34:11 -5733.652056] SLOW spr round 25 (radius: 5) [15:34:59 -5733.650927] SLOW spr round 26 (radius: 10) [15:35:50 -5733.520516] SLOW spr round 27 (radius: 5) [15:36:40 -5733.431279] SLOW spr round 28 (radius: 10) [15:37:31 -5733.430875] SLOW spr round 29 (radius: 15) [15:38:27 -5733.430771] SLOW spr round 30 (radius: 20) [15:39:34 -5687.029050] SLOW spr round 31 (radius: 5) [15:40:28 -5676.233975] SLOW spr round 32 (radius: 5) [15:41:17 -5676.233951] SLOW spr round 33 (radius: 10) [15:42:08 -5676.233944] SLOW spr round 34 (radius: 15) [15:43:04 -5676.233941] SLOW spr round 35 (radius: 20) [15:44:10 -5673.695287] SLOW spr round 36 (radius: 5) [15:45:04 -5673.695283] SLOW spr round 37 (radius: 10) [15:45:56 -5672.919241] SLOW spr round 38 (radius: 5) [15:46:45 -5672.919240] SLOW spr round 39 (radius: 10) [15:47:36 -5672.919236] SLOW spr round 40 (radius: 15) [15:48:32 -5672.919236] SLOW spr round 41 (radius: 20) [15:49:39 -5672.655430] SLOW spr round 42 (radius: 5) [15:50:32 -5672.655429] SLOW spr round 43 (radius: 10) [15:51:24 -5672.655429] SLOW spr round 44 (radius: 15) [15:52:20 -5672.655429] SLOW spr round 45 (radius: 20) [15:53:26 -5672.655429] SLOW spr round 46 (radius: 25) [15:54:43 -5623.856624] SLOW spr round 47 (radius: 5) [15:55:37 -5620.874534] SLOW spr round 48 (radius: 5) [15:56:28 -5620.872375] SLOW spr round 49 (radius: 10) [15:57:19 -5620.798646] SLOW spr round 50 (radius: 15) [15:58:15 -5584.464777] SLOW spr round 51 (radius: 5) [15:59:09 -5556.276850] SLOW spr round 52 (radius: 5) [15:59:58 -5551.380287] SLOW spr round 53 (radius: 5) [16:00:46 -5551.380250] SLOW spr round 54 (radius: 10) [16:01:36 -5551.380213] SLOW spr round 55 (radius: 15) [16:02:31 -5551.124564] SLOW spr round 56 (radius: 5) [16:03:24 -5551.124506] SLOW spr round 57 (radius: 10) [16:04:15 -5551.124467] SLOW spr round 58 (radius: 15) [16:05:09 -5551.124429] SLOW spr round 59 (radius: 20) [16:06:16 -5547.651026] SLOW spr round 60 (radius: 5) [16:07:10 -5530.453282] SLOW spr round 61 (radius: 5) [16:07:59 -5530.453207] SLOW spr round 62 (radius: 10) [16:08:49 -5530.453170] SLOW spr round 63 (radius: 15) [16:09:45 -5530.453134] SLOW spr round 64 (radius: 20) [16:10:51 -5530.453098] SLOW spr round 65 (radius: 25) [16:12:08 -5528.752544] SLOW spr round 66 (radius: 5) [16:13:02 -5528.663326] SLOW spr round 67 (radius: 10) [16:13:53 -5528.663326] SLOW spr round 68 (radius: 15) [16:14:48 -5528.663326] SLOW spr round 69 (radius: 20) [16:15:54 -5528.663326] SLOW spr round 70 (radius: 25) [16:17:09 -5528.663326] Model parameter optimization (eps = 0.100000) [16:17:18] ML tree search #17, logLikelihood: -5527.299351 [16:17:18 -25232.618567] Initial branch length optimization [16:17:18 -19954.806866] Model parameter optimization (eps = 10.000000) [16:17:30 -19815.388309] AUTODETECT spr round 1 (radius: 5) [16:18:15 -14180.200362] AUTODETECT spr round 2 (radius: 10) [16:19:07 -10915.566605] AUTODETECT spr round 3 (radius: 15) [16:20:02 -8914.246304] AUTODETECT spr round 4 (radius: 20) [16:21:06 -7782.808782] AUTODETECT spr round 5 (radius: 25) [16:22:24 -7232.635134] SPR radius for FAST iterations: 25 (autodetect) [16:22:24 -7232.635134] Model parameter optimization (eps = 3.000000) [16:22:38 -7215.941841] FAST spr round 1 (radius: 25) [16:23:33 -5704.871070] FAST spr round 2 (radius: 25) [16:24:23 -5480.603457] FAST spr round 3 (radius: 25) [16:25:13 -5466.031019] FAST spr round 4 (radius: 25) [16:26:02 -5461.927616] FAST spr round 5 (radius: 25) [16:26:49 -5461.925290] Model parameter optimization (eps = 1.000000) [16:26:58 -5460.261961] SLOW spr round 1 (radius: 5) [16:27:47 -5459.095435] SLOW spr round 2 (radius: 5) [16:28:35 -5459.093734] SLOW spr round 3 (radius: 10) [16:29:26 -5452.943620] SLOW spr round 4 (radius: 5) [16:30:17 -5452.461070] SLOW spr round 5 (radius: 5) [16:31:04 -5452.461003] SLOW spr round 6 (radius: 10) [16:31:55 -5452.460995] SLOW spr round 7 (radius: 15) [16:32:52 -5420.832892] SLOW spr round 8 (radius: 5) [16:33:45 -5413.895410] SLOW spr round 9 (radius: 5) [16:34:34 -5412.282191] SLOW spr round 10 (radius: 5) [16:35:21 -5412.282168] SLOW spr round 11 (radius: 10) [16:36:11 -5412.282164] SLOW spr round 12 (radius: 15) [16:37:07 -5412.251109] SLOW spr round 13 (radius: 20) [16:38:13 -5404.203007] SLOW spr round 14 (radius: 5) [16:39:08 -5388.517060] SLOW spr round 15 (radius: 5) [16:39:58 -5387.150273] SLOW spr round 16 (radius: 5) [16:40:46 -5386.840476] SLOW spr round 17 (radius: 5) [16:41:33 -5386.835682] SLOW spr round 18 (radius: 10) [16:42:23 -5386.835682] SLOW spr round 19 (radius: 15) [16:43:18 -5381.889348] SLOW spr round 20 (radius: 5) [16:44:11 -5379.748720] SLOW spr round 21 (radius: 5) [16:45:00 -5378.819633] SLOW spr round 22 (radius: 5) [16:45:47 -5378.819624] SLOW spr round 23 (radius: 10) [16:46:37 -5378.819624] SLOW spr round 24 (radius: 15) [16:47:32 -5378.809719] SLOW spr round 25 (radius: 20) [16:48:36 -5378.809606] SLOW spr round 26 (radius: 25) [16:49:47 -5350.652453] SLOW spr round 27 (radius: 5) [16:50:41 -5350.234385] SLOW spr round 28 (radius: 5) [16:51:31 -5348.524319] SLOW spr round 29 (radius: 5) [16:52:18 -5348.524223] SLOW spr round 30 (radius: 10) [16:53:08 -5348.524125] SLOW spr round 31 (radius: 15) [16:54:03 -5348.524026] SLOW spr round 32 (radius: 20) [16:55:08 -5348.523925] SLOW spr round 33 (radius: 25) [16:56:20 -5348.523823] Model parameter optimization (eps = 0.100000) [16:56:29] ML tree search #18, logLikelihood: -5347.978012 [16:56:29 -25301.700575] Initial branch length optimization [16:56:30 -20160.554598] Model parameter optimization (eps = 10.000000) [16:56:42 -20025.177823] AUTODETECT spr round 1 (radius: 5) [16:57:29 -13820.327413] AUTODETECT spr round 2 (radius: 10) [16:58:20 -10240.689168] AUTODETECT spr round 3 (radius: 15) [16:59:18 -8493.752536] AUTODETECT spr round 4 (radius: 20) [17:00:21 -7766.608309] AUTODETECT spr round 5 (radius: 25) [17:01:19 -7346.709939] SPR radius for FAST iterations: 25 (autodetect) [17:01:19 -7346.709939] Model parameter optimization (eps = 3.000000) [17:01:31 -7339.201852] FAST spr round 1 (radius: 25) [17:02:22 -6523.276909] FAST spr round 2 (radius: 25) [17:03:10 -6355.921604] FAST spr round 3 (radius: 25) [17:03:57 -6326.324978] FAST spr round 4 (radius: 25) [17:04:43 -6324.041963] FAST spr round 5 (radius: 25) [17:05:29 -6324.041732] Model parameter optimization (eps = 1.000000) [17:05:38 -6322.253623] SLOW spr round 1 (radius: 5) [17:06:27 -6321.169507] SLOW spr round 2 (radius: 5) [17:07:15 -6321.169442] SLOW spr round 3 (radius: 10) [17:08:05 -6318.044925] SLOW spr round 4 (radius: 5) [17:08:56 -6318.043681] SLOW spr round 5 (radius: 10) [17:09:46 -6318.043677] SLOW spr round 6 (radius: 15) [17:10:42 -6290.608391] SLOW spr round 7 (radius: 5) [17:11:37 -6233.144226] SLOW spr round 8 (radius: 5) [17:12:25 -6233.143911] SLOW spr round 9 (radius: 10) [17:13:15 -6233.143883] SLOW spr round 10 (radius: 15) [17:14:10 -6198.484412] SLOW spr round 11 (radius: 5) [17:15:04 -6154.077529] SLOW spr round 12 (radius: 5) [17:15:53 -6152.590096] SLOW spr round 13 (radius: 5) [17:16:41 -6152.590084] SLOW spr round 14 (radius: 10) [17:17:30 -6152.590080] SLOW spr round 15 (radius: 15) [17:18:26 -6141.553810] SLOW spr round 16 (radius: 5) [17:19:21 -6090.784247] SLOW spr round 17 (radius: 5) [17:20:11 -6086.489118] SLOW spr round 18 (radius: 5) [17:20:58 -6085.902424] SLOW spr round 19 (radius: 5) [17:21:46 -6085.901135] SLOW spr round 20 (radius: 10) [17:22:36 -6085.900880] SLOW spr round 21 (radius: 15) [17:23:30 -6085.900714] SLOW spr round 22 (radius: 20) [17:24:34 -6085.613982] SLOW spr round 23 (radius: 5) [17:25:29 -6084.237038] SLOW spr round 24 (radius: 5) [17:26:19 -6084.236384] SLOW spr round 25 (radius: 10) [17:27:08 -6084.236318] SLOW spr round 26 (radius: 15) [17:28:03 -6084.230178] SLOW spr round 27 (radius: 20) [17:29:09 -6081.758948] SLOW spr round 28 (radius: 5) [17:30:03 -6078.249196] SLOW spr round 29 (radius: 5) [17:30:52 -6078.249175] SLOW spr round 30 (radius: 10) [17:31:41 -6078.249160] SLOW spr round 31 (radius: 15) [17:32:36 -6078.222853] SLOW spr round 32 (radius: 20) [17:33:42 -6078.222843] SLOW spr round 33 (radius: 25) [17:34:55 -6030.304546] SLOW spr round 34 (radius: 5) [17:35:51 -5996.917015] SLOW spr round 35 (radius: 5) [17:36:41 -5988.719429] SLOW spr round 36 (radius: 5) [17:37:29 -5988.719387] SLOW spr round 37 (radius: 10) [17:38:20 -5983.937709] SLOW spr round 38 (radius: 5) [17:39:11 -5983.782996] SLOW spr round 39 (radius: 5) [17:39:59 -5983.782797] SLOW spr round 40 (radius: 10) [17:40:49 -5983.782795] SLOW spr round 41 (radius: 15) [17:41:45 -5964.282539] SLOW spr round 42 (radius: 5) [17:42:37 -5963.863539] SLOW spr round 43 (radius: 5) [17:43:27 -5963.863338] SLOW spr round 44 (radius: 10) [17:44:17 -5963.863336] SLOW spr round 45 (radius: 15) [17:45:13 -5948.124605] SLOW spr round 46 (radius: 5) [17:46:07 -5923.629297] SLOW spr round 47 (radius: 5) [17:46:56 -5923.629295] SLOW spr round 48 (radius: 10) [17:47:46 -5923.629295] SLOW spr round 49 (radius: 15) [17:48:42 -5923.629293] SLOW spr round 50 (radius: 20) [17:49:51 -5896.851802] SLOW spr round 51 (radius: 5) [17:50:47 -5862.494864] SLOW spr round 52 (radius: 5) [17:51:38 -5807.528712] SLOW spr round 53 (radius: 5) [17:52:26 -5807.293311] SLOW spr round 54 (radius: 5) [17:53:14 -5807.292232] SLOW spr round 55 (radius: 10) [17:54:05 -5801.635840] SLOW spr round 56 (radius: 5) [17:54:54 -5801.635691] SLOW spr round 57 (radius: 10) [17:55:45 -5798.743760] SLOW spr round 58 (radius: 5) [17:56:35 -5795.870346] SLOW spr round 59 (radius: 5) [17:57:23 -5795.870208] SLOW spr round 60 (radius: 10) [17:58:14 -5795.870207] SLOW spr round 61 (radius: 15) [17:59:10 -5795.870207] SLOW spr round 62 (radius: 20) [18:00:19 -5795.870198] SLOW spr round 63 (radius: 25) [18:01:35 -5735.618526] SLOW spr round 64 (radius: 5) [18:02:30 -5716.039350] SLOW spr round 65 (radius: 5) [18:03:20 -5716.038951] SLOW spr round 66 (radius: 10) [18:04:10 -5716.038944] SLOW spr round 67 (radius: 15) [18:05:07 -5691.707735] SLOW spr round 68 (radius: 5) [18:06:00 -5691.707039] SLOW spr round 69 (radius: 10) [18:06:52 -5691.707035] SLOW spr round 70 (radius: 15) [18:07:48 -5691.707032] SLOW spr round 71 (radius: 20) [18:08:57 -5672.177930] SLOW spr round 72 (radius: 5) [18:09:52 -5662.883775] SLOW spr round 73 (radius: 5) [18:10:43 -5608.925241] SLOW spr round 74 (radius: 5) [18:11:33 -5593.836440] SLOW spr round 75 (radius: 5) [18:12:21 -5592.472786] SLOW spr round 76 (radius: 5) [18:13:09 -5592.466802] SLOW spr round 77 (radius: 10) [18:13:59 -5592.464321] SLOW spr round 78 (radius: 15) [18:14:54 -5590.525450] SLOW spr round 79 (radius: 5) [18:15:47 -5590.525425] SLOW spr round 80 (radius: 10) [18:16:38 -5572.869586] SLOW spr round 81 (radius: 5) [18:17:29 -5572.869267] SLOW spr round 82 (radius: 10) [18:18:19 -5572.137818] SLOW spr round 83 (radius: 5) [18:19:09 -5572.137735] SLOW spr round 84 (radius: 10) [18:20:00 -5572.137735] SLOW spr round 85 (radius: 15) [18:20:55 -5570.878221] SLOW spr round 86 (radius: 5) [18:21:48 -5570.723163] SLOW spr round 87 (radius: 5) [18:22:36 -5570.723144] SLOW spr round 88 (radius: 10) [18:23:27 -5570.723144] SLOW spr round 89 (radius: 15) [18:24:22 -5570.723144] SLOW spr round 90 (radius: 20) [18:25:30 -5499.492510] SLOW spr round 91 (radius: 5) [18:26:25 -5470.909517] SLOW spr round 92 (radius: 5) [18:27:16 -5415.378183] SLOW spr round 93 (radius: 5) [18:28:04 -5414.118115] SLOW spr round 94 (radius: 5) [18:28:52 -5413.963566] SLOW spr round 95 (radius: 5) [18:29:40 -5413.963463] SLOW spr round 96 (radius: 10) [18:30:30 -5413.963455] SLOW spr round 97 (radius: 15) [18:31:26 -5397.718057] SLOW spr round 98 (radius: 5) [18:32:19 -5397.227990] SLOW spr round 99 (radius: 5) [18:33:08 -5397.227881] SLOW spr round 100 (radius: 10) [18:33:58 -5397.227878] SLOW spr round 101 (radius: 15) [18:34:54 -5396.558235] SLOW spr round 102 (radius: 5) [18:35:47 -5396.546659] SLOW spr round 103 (radius: 10) [18:36:38 -5395.530669] SLOW spr round 104 (radius: 5) [18:37:27 -5395.530586] SLOW spr round 105 (radius: 10) [18:38:18 -5395.530583] SLOW spr round 106 (radius: 15) [18:39:13 -5395.530583] SLOW spr round 107 (radius: 20) [18:40:19 -5395.530583] SLOW spr round 108 (radius: 25) [18:41:34 -5377.532382] SLOW spr round 109 (radius: 5) [18:42:29 -5361.916391] SLOW spr round 110 (radius: 5) [18:43:18 -5361.915034] SLOW spr round 111 (radius: 10) [18:44:09 -5361.915003] SLOW spr round 112 (radius: 15) [18:45:05 -5361.915003] SLOW spr round 113 (radius: 20) [18:46:11 -5361.915003] SLOW spr round 114 (radius: 25) [18:47:27 -5361.915003] Model parameter optimization (eps = 0.100000) [18:47:36] ML tree search #19, logLikelihood: -5361.476253 [18:47:36 -25325.175521] Initial branch length optimization [18:47:36 -19946.378942] Model parameter optimization (eps = 10.000000) [18:47:46 -19811.162708] AUTODETECT spr round 1 (radius: 5) [18:48:33 -13966.225896] AUTODETECT spr round 2 (radius: 10) [18:49:24 -10536.164031] AUTODETECT spr round 3 (radius: 15) [18:50:21 -8952.494215] AUTODETECT spr round 4 (radius: 20) [18:51:35 -8055.381126] AUTODETECT spr round 5 (radius: 25) [18:52:36 -7363.417414] SPR radius for FAST iterations: 25 (autodetect) [18:52:36 -7363.417414] Model parameter optimization (eps = 3.000000) [18:52:48 -7349.117397] FAST spr round 1 (radius: 25) [18:53:41 -6095.969227] FAST spr round 2 (radius: 25) [18:54:31 -5832.562267] FAST spr round 3 (radius: 25) [18:55:21 -5740.986419] FAST spr round 4 (radius: 25) [18:56:10 -5716.900563] FAST spr round 5 (radius: 25) [18:56:57 -5712.434919] FAST spr round 6 (radius: 25) [18:57:45 -5712.431819] Model parameter optimization (eps = 1.000000) [18:57:50 -5711.817218] SLOW spr round 1 (radius: 5) [18:58:39 -5711.466220] SLOW spr round 2 (radius: 5) [18:59:28 -5690.922268] SLOW spr round 3 (radius: 5) [19:00:16 -5690.921861] SLOW spr round 4 (radius: 10) [19:01:07 -5690.486581] SLOW spr round 5 (radius: 5) [19:01:57 -5689.239481] SLOW spr round 6 (radius: 5) [19:02:45 -5689.239444] SLOW spr round 7 (radius: 10) [19:03:37 -5688.469013] SLOW spr round 8 (radius: 5) [19:04:27 -5686.913030] SLOW spr round 9 (radius: 5) [19:05:15 -5686.913001] SLOW spr round 10 (radius: 10) [19:06:06 -5686.912998] SLOW spr round 11 (radius: 15) [19:07:02 -5620.375717] SLOW spr round 12 (radius: 5) [19:07:55 -5606.166218] SLOW spr round 13 (radius: 5) [19:08:44 -5606.166127] SLOW spr round 14 (radius: 10) [19:09:35 -5605.524398] SLOW spr round 15 (radius: 5) [19:10:24 -5605.524373] SLOW spr round 16 (radius: 10) [19:11:15 -5605.524352] SLOW spr round 17 (radius: 15) [19:12:09 -5605.524334] SLOW spr round 18 (radius: 20) [19:13:11 -5601.661049] SLOW spr round 19 (radius: 5) [19:14:05 -5601.660456] SLOW spr round 20 (radius: 10) [19:14:57 -5600.697715] SLOW spr round 21 (radius: 5) [19:15:46 -5600.697696] SLOW spr round 22 (radius: 10) [19:16:38 -5600.697679] SLOW spr round 23 (radius: 15) [19:17:32 -5600.697668] SLOW spr round 24 (radius: 20) [19:18:33 -5599.378850] SLOW spr round 25 (radius: 5) [19:19:28 -5565.168476] SLOW spr round 26 (radius: 5) [19:20:18 -5565.167926] SLOW spr round 27 (radius: 10) [19:21:09 -5565.167796] SLOW spr round 28 (radius: 15) [19:22:03 -5564.883934] SLOW spr round 29 (radius: 5) [19:22:55 -5564.642271] SLOW spr round 30 (radius: 5) [19:23:43 -5564.642257] SLOW spr round 31 (radius: 10) [19:24:34 -5564.642248] SLOW spr round 32 (radius: 15) [19:25:29 -5564.362125] SLOW spr round 33 (radius: 5) [19:26:21 -5564.361936] SLOW spr round 34 (radius: 10) [19:27:13 -5564.361904] SLOW spr round 35 (radius: 15) [19:28:07 -5564.361896] SLOW spr round 36 (radius: 20) [19:29:12 -5554.727708] SLOW spr round 37 (radius: 5) [19:30:06 -5553.928538] SLOW spr round 38 (radius: 5) [19:30:55 -5541.626988] SLOW spr round 39 (radius: 5) [19:31:42 -5541.626982] SLOW spr round 40 (radius: 10) [19:32:33 -5541.626977] SLOW spr round 41 (radius: 15) [19:33:27 -5541.626971] SLOW spr round 42 (radius: 20) [19:34:30 -5541.626966] SLOW spr round 43 (radius: 25) [19:35:44 -5515.047359] SLOW spr round 44 (radius: 5) [19:36:38 -5513.087166] SLOW spr round 45 (radius: 5) [19:37:27 -5513.087154] SLOW spr round 46 (radius: 10) [19:38:18 -5511.295576] SLOW spr round 47 (radius: 5) [19:39:08 -5511.295191] SLOW spr round 48 (radius: 10) [19:39:59 -5511.295189] SLOW spr round 49 (radius: 15) [19:40:53 -5511.295187] SLOW spr round 50 (radius: 20) [19:41:57 -5511.295185] SLOW spr round 51 (radius: 25) [19:43:11 -5511.295183] Model parameter optimization (eps = 0.100000) [19:43:17] ML tree search #20, logLikelihood: -5511.047375 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.300122,0.225816) (0.332949,0.342703) (0.233596,1.267655) (0.133333,3.915051) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -5220.116952 AIC score: 13926.233903 / AICc score: 6093510.233903 / BIC score: 16368.520939 Free parameters (model + branch lengths): 1743 WARNING: Number of free parameters (K=1743) is larger than alignment size (n=30). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 616 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5R5/3_mltree/Q9Y5R5.raxml.bestTreeCollapsed Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5R5/3_mltree/Q9Y5R5.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5R5/3_mltree/Q9Y5R5.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5R5/3_mltree/Q9Y5R5.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9Y5R5/3_mltree/Q9Y5R5.raxml.log Analysis started: 05-Jul-2021 23:26:55 / finished: 06-Jul-2021 19:10:13 Elapsed time: 70997.622 seconds