RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 12-Jul-2021 18:00:18 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y484/2_msa/Q9Y484_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y484/3_mltree/Q9Y484.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y484/4_raxmlng_ancestral/Q9Y484 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626102018 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y484/2_msa/Q9Y484_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 360 sites WARNING: Sequences tr_B4QXC0_B4QXC0_DROSI_7240 and tr_Q9VHJ2_Q9VHJ2_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QXC0_B4QXC0_DROSI_7240 and tr_B4HKY3_B4HKY3_DROSE_7238 are exactly identical! WARNING: Sequences sp_Q9CR39_WIPI3_MOUSE_10090 and tr_Q2MCP5_Q2MCP5_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9CR39_WIPI3_MOUSE_10090 and tr_A0A3Q0CPN4_A0A3Q0CPN4_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YQU2_M3YQU2_MUSPF_9669 and tr_A0A2I2UUZ2_A0A2I2UUZ2_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YQU2_M3YQU2_MUSPF_9669 and tr_A0A3Q0E8S7_A0A3Q0E8S7_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YQU2_M3YQU2_MUSPF_9669 and tr_A0A2U3Y407_A0A2U3Y407_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G3HNC1_G3HNC1_CRIGR_10029 and tr_A0A1U8CKM2_A0A1U8CKM2_MESAU_10036 are exactly identical! WARNING: Sequences tr_J3K8W5_J3K8W5_COCIM_246410 and tr_A0A0J7B288_A0A0J7B288_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6QEF1_B6QEF1_TALMQ_441960 and tr_A0A093UV88_A0A093UV88_TALMA_1077442 are exactly identical! WARNING: Sequences tr_A0A2I2Z2E1_A0A2I2Z2E1_GORGO_9595 and tr_H2NV67_H2NV67_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2Z2E1_A0A2I2Z2E1_GORGO_9595 and tr_H2QE56_H2QE56_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2Z2E1_A0A2I2Z2E1_GORGO_9595 and tr_H0XYE4_H0XYE4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_A0A2I2Z2E1_A0A2I2Z2E1_GORGO_9595 and tr_A0A286X7P3_A0A286X7P3_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A2I2Z2E1_A0A2I2Z2E1_GORGO_9595 and sp_Q5MNZ6_WIPI3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2Z2E1_A0A2I2Z2E1_GORGO_9595 and tr_A0A096NTP6_A0A096NTP6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I2Z2E1_A0A2I2Z2E1_GORGO_9595 and tr_A0A091DUG4_A0A091DUG4_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A2I2Z2E1_A0A2I2Z2E1_GORGO_9595 and tr_A0A0D9S4Z4_A0A0D9S4Z4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I2Z2E1_A0A2I2Z2E1_GORGO_9595 and tr_A0A1U7T1S1_A0A1U7T1S1_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A2I2ZFN6_A0A2I2ZFN6_GORGO_9595 and tr_A0A2I3SGJ2_A0A2I3SGJ2_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZFN6_A0A2I2ZFN6_GORGO_9595 and sp_Q9Y484_WIPI4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZFN6_A0A2I2ZFN6_GORGO_9595 and tr_F7BK31_F7BK31_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I2ZFN6_A0A2I2ZFN6_GORGO_9595 and tr_A0A096MR57_A0A096MR57_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I2ZFN6_A0A2I2ZFN6_GORGO_9595 and tr_A0A0D9RKG8_A0A0D9RKG8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I2ZFN6_A0A2I2ZFN6_GORGO_9595 and tr_A0A2K6CDA1_A0A2K6CDA1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I2ZFN6_A0A2I2ZFN6_GORGO_9595 and tr_A0A2K6A994_A0A2K6A994_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I2ZFN6_A0A2I2ZFN6_GORGO_9595 and tr_A0A2R9C9Y6_A0A2R9C9Y6_PANPA_9597 are exactly identical! WARNING: Sequences tr_Q294H1_Q294H1_DROPS_46245 and tr_B4GL41_B4GL41_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A179UBE0_A0A179UBE0_BLAGS_559298 and tr_A0A179U285_A0A179U285_AJEDR_559297 are exactly identical! WARNING: Sequences tr_H9GWC5_H9GWC5_CANLF_9615 and tr_A0A384CB67_A0A384CB67_URSMA_29073 are exactly identical! WARNING: Sequences tr_W5PMY7_W5PMY7_SHEEP_9940 and tr_D7RA32_D7RA32_PIG_9823 are exactly identical! WARNING: Sequences tr_W5PMY7_W5PMY7_SHEEP_9940 and tr_Q0IIH0_Q0IIH0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PMY7_W5PMY7_SHEEP_9940 and tr_A0A2Y9MB88_A0A2Y9MB88_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5PMY7_W5PMY7_SHEEP_9940 and tr_A0A2Y9FEK8_A0A2Y9FEK8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F9FGF2_F9FGF2_FUSOF_660025 and tr_N4U3I1_N4U3I1_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9FGF2_F9FGF2_FUSOF_660025 and tr_X0CTG4_X0CTG4_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9FGF2_F9FGF2_FUSOF_660025 and tr_A0A2H3TD32_A0A2H3TD32_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9FGF2_F9FGF2_FUSOF_660025 and tr_A0A2H3HLF8_A0A2H3HLF8_FUSOX_327505 are exactly identical! WARNING: Sequences tr_C6HFP3_C6HFP3_AJECH_544712 and tr_F0UM69_F0UM69_AJEC8_544711 are exactly identical! WARNING: Sequences tr_A0A3B5PS17_A0A3B5PS17_XIPMA_8083 and tr_A0A087YMH1_A0A087YMH1_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A158NKN7_A0A158NKN7_ATTCE_12957 and tr_F4WD07_F4WD07_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NKN7_A0A158NKN7_ATTCE_12957 and tr_A0A195BVW5_A0A195BVW5_9HYME_520822 are exactly identical! WARNING: Sequences tr_Q2U6K1_Q2U6K1_ASPOR_510516 and tr_A0A0F0IKQ0_A0A0F0IKQ0_ASPPU_1403190 are exactly identical! WARNING: Sequences tr_Q2U6K1_Q2U6K1_ASPOR_510516 and tr_A0A1S9D8X5_A0A1S9D8X5_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_A0A0E0FYE8_A0A0E0FYE8_ORYNI_4536 and tr_A0A0D9YJP1_A0A0D9YJP1_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0HA46_A0A0E0HA46_ORYNI_4536 and tr_B8AYP2_B8AYP2_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0HA46_A0A0E0HA46_ORYNI_4536 and tr_A0A0E0PI30_A0A0E0PI30_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0HA46_A0A0E0HA46_ORYNI_4536 and tr_Q0DKE9_Q0DKE9_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A2K1R6R7_A0A2K1R6R7_POPTR_3694 and tr_U5FEL0_U5FEL0_POPTR_3694 are exactly identical! WARNING: Sequences tr_A2WYS0_A2WYS0_ORYSI_39946 and tr_I1NUY6_I1NUY6_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A2WYS0_A2WYS0_ORYSI_39946 and tr_A0A0E0N7A0_A0A0E0N7A0_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A2WYS0_A2WYS0_ORYSI_39946 and tr_A0A0D3EYB7_A0A0D3EYB7_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A2WYS0_A2WYS0_ORYSI_39946 and tr_A0A0E0JT97_A0A0E0JT97_ORYPU_4537 are exactly identical! WARNING: Sequences tr_A2WYS0_A2WYS0_ORYSI_39946 and tr_Q8LR61_Q8LR61_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_B8ADG4_B8ADG4_ORYSI_39946 and tr_I1NKL3_I1NKL3_ORYGL_4538 are exactly identical! WARNING: Sequences tr_B8ADG4_B8ADG4_ORYSI_39946 and tr_A0A0E0MRW3_A0A0E0MRW3_ORYRU_4529 are exactly identical! WARNING: Sequences tr_B8ADG4_B8ADG4_ORYSI_39946 and tr_A0A0D3EK18_A0A0D3EK18_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_B8ADG4_B8ADG4_ORYSI_39946 and tr_Q5VQF8_Q5VQF8_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_F4PES2_F4PES2_BATDJ_684364 and tr_A0A177WSB7_A0A177WSB7_BATDE_403673 are exactly identical! WARNING: Sequences tr_D2HUY4_D2HUY4_AILME_9646 and tr_M3VYA5_M3VYA5_FELCA_9685 are exactly identical! WARNING: Sequences tr_D2HUY4_D2HUY4_AILME_9646 and tr_A0A2U3W8D3_A0A2U3W8D3_ODORO_9708 are exactly identical! WARNING: Sequences tr_D2HUY4_D2HUY4_AILME_9646 and tr_A0A2U3YA16_A0A2U3YA16_LEPWE_9713 are exactly identical! WARNING: Sequences tr_B3RN25_B3RN25_TRIAD_10228 and tr_A0A369SAI5_A0A369SAI5_9METZ_287889 are exactly identical! WARNING: Sequences tr_L2G684_L2G684_COLFN_1213859 and tr_T0M2V3_T0M2V3_COLGC_1237896 are exactly identical! WARNING: Sequences tr_R1CIQ2_R1CIQ2_EMIHU_2903 and tr_R1DT01_R1DT01_EMIHU_2903 are exactly identical! WARNING: Sequences tr_W2RB30_W2RB30_PHYPN_761204 and tr_W2H3M6_W2H3M6_PHYPR_4792 are exactly identical! WARNING: Sequences tr_W2RB30_W2RB30_PHYPN_761204 and tr_A0A329SQ79_A0A329SQ79_9STRA_29920 are exactly identical! WARNING: Sequences tr_A0A067EMG5_A0A067EMG5_CITSI_2711 and tr_V4TAP3_V4TAP3_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A078GIW1_A0A078GIW1_BRANA_3708 and tr_A0A0D3CVE6_A0A0D3CVE6_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A094ER87_A0A094ER87_9PEZI_1420912 and tr_A0A2P2SWR6_A0A2P2SWR6_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A0A2VQ87_A0A0A2VQ87_BEABA_1245745 and tr_A0A2N6NJP6_A0A2N6NJP6_BEABA_176275 are exactly identical! WARNING: Sequences tr_V4T7N9_V4T7N9_9ROSI_85681 and tr_A0A2H5PNI5_A0A2H5PNI5_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A091FSW1_A0A091FSW1_CORBR_85066 and tr_A0A091FZS9_A0A091FZS9_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091J360_A0A091J360_EGRGA_188379 and tr_A0A093H127_A0A093H127_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091J360_A0A091J360_EGRGA_188379 and tr_A0A099ZYB2_A0A099ZYB2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A194QS70_A0A194QS70_PAPMA_76193 and tr_A0A194QH51_A0A194QH51_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A0V1CF45_A0A0V1CF45_TRIBR_45882 and tr_A0A0V0V192_A0A0V0V192_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CF45_A0A0V1CF45_TRIBR_45882 and tr_A0A0V0U608_A0A0V0U608_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0WGL8_A0A0V0WGL8_9BILA_92179 and tr_A0A0V1LLT9_A0A0V1LLT9_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1LTQ5_A0A0V1LTQ5_9BILA_6335 and tr_A0A0V0ZSZ9_A0A0V0ZSZ9_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1NTX8_A0A0V1NTX8_9BILA_92180 and tr_A0A0V0TZE7_A0A0V0TZE7_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A195EKD2_A0A195EKD2_9HYME_471704 and tr_A0A195F677_A0A195F677_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A1S4B5I6_A0A1S4B5I6_TOBAC_4097 and tr_A0A1U7X3S3_A0A1U7X3S3_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3KZP1_A0A1S3KZP1_SALSA_8030 and tr_A0A060X9J2_A0A060X9J2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3NEB5_A0A1S3NEB5_SALSA_8030 and tr_A0A060XCW3_A0A060XCW3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3VW42_A0A1S3VW42_VIGRR_3916 and tr_A0A3Q0EP10_A0A3Q0EP10_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A1L9MY89_A0A1L9MY89_ASPTU_767770 and tr_A0A317W135_A0A317W135_9EURO_1448314 are exactly identical! WARNING: Sequences tr_A0A1J6J9Q3_A0A1J6J9Q3_NICAT_49451 and tr_A0A1U7WLV9_A0A1U7WLV9_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A226MSP3_A0A226MSP3_CALSU_9009 and tr_A0A226PM52_A0A226PM52_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2G4T4W2_A0A2G4T4W2_9FUNG_1340429 and tr_A0A367J5A6_A0A367J5A6_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A2G4T4W2_A0A2G4T4W2_9FUNG_1340429 and tr_A0A367K5Y0_A0A367K5Y0_9FUNG_86630 are exactly identical! WARNING: Duplicate sequences found: 91 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y484/4_raxmlng_ancestral/Q9Y484.raxml.reduced.phy Alignment comprises 1 partitions and 360 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 360 Gaps: 13.31 % Invariant sites: 0.56 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y484/4_raxmlng_ancestral/Q9Y484.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y484/3_mltree/Q9Y484.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 90 / 7200 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -129090.195372 [00:00:00 -129090.195372] Initial branch length optimization [00:00:00 -128849.334870] Model parameter optimization (eps = 0.100000) [00:00:42] Tree #1, final logLikelihood: -128511.123000 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.135024,0.353821) (0.245242,0.520024) (0.412691,0.977170) (0.207043,2.035445) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y484/4_raxmlng_ancestral/Q9Y484.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y484/4_raxmlng_ancestral/Q9Y484.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y484/4_raxmlng_ancestral/Q9Y484.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y484/4_raxmlng_ancestral/Q9Y484.raxml.log Analysis started: 12-Jul-2021 18:00:18 / finished: 12-Jul-2021 18:01:03 Elapsed time: 45.479 seconds Consumed energy: 3.424 Wh