RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 04-Jul-2021 01:33:58 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y3Q4/2_msa/Q9Y3Q4_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y3Q4/3_mltree/Q9Y3Q4 --seed 2 --threads 7 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (7 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y3Q4/2_msa/Q9Y3Q4_trimmed_msa.fasta
[00:00:00] Loaded alignment with 718 taxa and 476 sites

WARNING: Sequences tr_B4QFF5_B4QFF5_DROSI_7240 and tr_A1Z9N7_A1Z9N7_DROME_7227 are exactly identical!
WARNING: Sequences tr_B4QFF5_B4QFF5_DROSI_7240 and tr_B4HRA8_B4HRA8_DROSE_7238 are exactly identical!
WARNING: Sequences tr_B4QFF5_B4QFF5_DROSI_7240 and tr_A0A1W4WA06_A0A1W4WA06_DROFC_30025 are exactly identical!
WARNING: Sequences tr_F1N9K1_F1N9K1_CHICK_9031 and tr_A0A093HLF6_A0A093HLF6_STRCA_441894 are exactly identical!
WARNING: Sequences tr_F1NLU5_F1NLU5_CHICK_9031 and tr_A0A093QKN6_A0A093QKN6_9PASS_328815 are exactly identical!
WARNING: Sequences tr_F1NLU5_F1NLU5_CHICK_9031 and tr_A0A091VFH4_A0A091VFH4_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_F1NLU5_F1NLU5_CHICK_9031 and tr_A0A091I8V0_A0A091I8V0_CALAN_9244 are exactly identical!
WARNING: Sequences sp_O88703_HCN2_MOUSE_10090 and sp_Q9JKA9_HCN2_RAT_10116 are exactly identical!
WARNING: Sequences sp_O88703_HCN2_MOUSE_10090 and tr_A0A3Q0DCI7_A0A3Q0DCI7_MESAU_10036 are exactly identical!
WARNING: Sequences sp_O88704_HCN1_MOUSE_10090 and sp_Q9JKB0_HCN1_RAT_10116 are exactly identical!
WARNING: Sequences sp_O88704_HCN1_MOUSE_10090 and tr_U3FNQ3_U3FNQ3_CALJA_9483 are exactly identical!
WARNING: Sequences sp_O88704_HCN1_MOUSE_10090 and tr_A0A1S2ZDG9_A0A1S2ZDG9_ERIEU_9365 are exactly identical!
WARNING: Sequences sp_O88704_HCN1_MOUSE_10090 and tr_A0A2Y9IKX6_A0A2Y9IKX6_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3Z0K9_M3Z0K9_MUSPF_9669 and tr_J9PAZ6_J9PAZ6_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3Z0K9_M3Z0K9_MUSPF_9669 and tr_H0XTX6_H0XTX6_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_M3Z0K9_M3Z0K9_MUSPF_9669 and tr_F1SIC3_F1SIC3_PIG_9823 are exactly identical!
WARNING: Sequences tr_M3Z0K9_M3Z0K9_MUSPF_9669 and tr_E1BIS4_E1BIS4_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_M3Z0K9_M3Z0K9_MUSPF_9669 and tr_M3W3P5_M3W3P5_FELCA_9685 are exactly identical!
WARNING: Sequences tr_M3Z0K9_M3Z0K9_MUSPF_9669 and tr_A0A3Q0DVK3_A0A3Q0DVK3_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_M3Z0K9_M3Z0K9_MUSPF_9669 and tr_A0A2U3X4L9_A0A2U3X4L9_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3Z0K9_M3Z0K9_MUSPF_9669 and tr_A0A2U3XJ34_A0A2U3XJ34_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_M3Z0K9_M3Z0K9_MUSPF_9669 and tr_A0A2Y9K415_A0A2Y9K415_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3Z0K9_M3Z0K9_MUSPF_9669 and tr_A0A2Y9NJG4_A0A2Y9NJG4_DELLE_9749 are exactly identical!
WARNING: Sequences tr_M3Z0K9_M3Z0K9_MUSPF_9669 and tr_A0A2Y9T4X3_A0A2Y9T4X3_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_G1RVI6_G1RVI6_NOMLE_61853 and tr_G3S0E3_G3S0E3_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1RVI6_G1RVI6_NOMLE_61853 and tr_H2Q9R7_H2Q9R7_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1RVI6_G1RVI6_NOMLE_61853 and sp_Q9Y3Q4_HCN4_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1RVI6_G1RVI6_NOMLE_61853 and tr_A0A2R8N068_A0A2R8N068_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G1RVI6_G1RVI6_NOMLE_61853 and tr_A0A096NMN4_A0A096NMN4_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1RVI6_G1RVI6_NOMLE_61853 and tr_A0A0D9RNB9_A0A0D9RNB9_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1RVI6_G1RVI6_NOMLE_61853 and tr_A0A2K5MZ23_A0A2K5MZ23_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1RVI6_G1RVI6_NOMLE_61853 and tr_A0A2K5YN57_A0A2K5YN57_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1RVI6_G1RVI6_NOMLE_61853 and tr_A0A2R9AXY2_A0A2R9AXY2_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1PD62_G1PD62_MYOLU_59463 and tr_W5PG78_W5PG78_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_G1PD62_G1PD62_MYOLU_59463 and tr_H0WXB3_H0WXB3_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_G1PD62_G1PD62_MYOLU_59463 and sp_Q9UL51_HCN2_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1PD62_G1PD62_MYOLU_59463 and tr_A0A287ARN0_A0A287ARN0_PIG_9823 are exactly identical!
WARNING: Sequences tr_G1PD62_G1PD62_MYOLU_59463 and tr_F1MW86_F1MW86_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_G1PD62_G1PD62_MYOLU_59463 and tr_A0A0D9RKK9_A0A0D9RKK9_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1PD62_G1PD62_MYOLU_59463 and tr_A0A2K5NPP3_A0A2K5NPP3_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1PD62_G1PD62_MYOLU_59463 and tr_A0A2U3YAT7_A0A2U3YAT7_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_G3HEJ3_G3HEJ3_CRIGR_10029 and sp_Q9JKA7_HCN4_RAT_10116 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_H2PFI0_H2PFI0_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_G1TCZ4_G1TCZ4_RABIT_9986 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and sp_Q9MZS1_HCN1_RABIT_9986 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_J9NYS7_J9NYS7_CANLF_9615 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_H2QQV0_H2QQV0_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and sp_O60741_HCN1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_I3LEM3_I3LEM3_PIG_9823 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_G1LGW4_G1LGW4_AILME_9646 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_G7P7H1_G7P7H1_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_E1BM97_E1BM97_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_M3X938_M3X938_FELCA_9685 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_A0A096MWN1_A0A096MWN1_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_A0A1S3FBW8_A0A1S3FBW8_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_A0A1U7R7U3_A0A1U7R7U3_MESAU_10036 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_A0A2K5P250_A0A2K5P250_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_A0A2K6DI60_A0A2K6DI60_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_A0A2R9C401_A0A2R9C401_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_A0A2U4AV10_A0A2U4AV10_TURTR_9739 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_A0A2Y9DSX9_A0A2Y9DSX9_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_A0A2Y9Q7J9_A0A2Y9Q7J9_DELLE_9749 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_A0A2Y9ETG5_A0A2Y9ETG5_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_G3QGQ2_G3QGQ2_GORGO_9595 and tr_A0A384C7W3_A0A384C7W3_URSMA_29073 are exactly identical!
WARNING: Sequences tr_G1MT76_G1MT76_MELGA_9103 and tr_U3J7T3_U3J7T3_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_G1MT76_G1MT76_MELGA_9103 and tr_A0A151ML69_A0A151ML69_ALLMI_8496 are exactly identical!
WARNING: Sequences tr_G1MT76_G1MT76_MELGA_9103 and tr_A0A091K8G8_A0A091K8G8_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_G1MT76_G1MT76_MELGA_9103 and tr_A0A091VG04_A0A091VG04_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_G1MT76_G1MT76_MELGA_9103 and tr_A0A087R1C2_A0A087R1C2_APTFO_9233 are exactly identical!
WARNING: Sequences tr_G1MT76_G1MT76_MELGA_9103 and tr_A0A093HRR6_A0A093HRR6_STRCA_441894 are exactly identical!
WARNING: Sequences tr_G1MT76_G1MT76_MELGA_9103 and tr_A0A091W7U9_A0A091W7U9_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_G1MT76_G1MT76_MELGA_9103 and tr_A0A0A0A2Z9_A0A0A0A2Z9_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_G1MT76_G1MT76_MELGA_9103 and tr_A0A093GWG4_A0A093GWG4_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_G1MT76_G1MT76_MELGA_9103 and tr_A0A1U8D5R0_A0A1U8D5R0_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_G1MT76_G1MT76_MELGA_9103 and tr_A0A1V4JCN9_A0A1V4JCN9_PATFA_372326 are exactly identical!
WARNING: Sequences tr_G1MVY8_G1MVY8_MELGA_9103 and tr_A0A226N1Z2_A0A226N1Z2_CALSU_9009 are exactly identical!
WARNING: Sequences tr_G1MVY8_G1MVY8_MELGA_9103 and tr_A0A226NQS7_A0A226NQS7_COLVI_9014 are exactly identical!
WARNING: Sequences tr_Q28X53_Q28X53_DROPS_46245 and tr_A0A0Q9WNN2_A0A0Q9WNN2_DROWI_7260 are exactly identical!
WARNING: Sequences tr_Q28X53_Q28X53_DROPS_46245 and tr_A0A0P8XQQ5_A0A0P8XQQ5_DROAN_7217 are exactly identical!
WARNING: Sequences tr_Q28X53_Q28X53_DROPS_46245 and tr_B4KSK8_B4KSK8_DROMO_7230 are exactly identical!
WARNING: Sequences tr_H2Q078_H2Q078_PANTR_9598 and tr_F6T124_F6T124_HORSE_9796 are exactly identical!
WARNING: Sequences tr_H2Q078_H2Q078_PANTR_9598 and tr_A0A2R8ZUU3_A0A2R8ZUU3_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F7F2J5_F7F2J5_MONDO_13616 and tr_G3W6N7_G3W6N7_SARHA_9305 are exactly identical!
WARNING: Sequences tr_M3ZCU5_M3ZCU5_XIPMA_8083 and tr_I3J3H3_I3J3H3_ORENI_8128 are exactly identical!
WARNING: Sequences tr_M3ZCU5_M3ZCU5_XIPMA_8083 and tr_H2U822_H2U822_TAKRU_31033 are exactly identical!
WARNING: Sequences tr_M3ZCU5_M3ZCU5_XIPMA_8083 and tr_H3D330_H3D330_TETNG_99883 are exactly identical!
WARNING: Sequences tr_M3ZCU5_M3ZCU5_XIPMA_8083 and tr_A0A2I4CLY5_A0A2I4CLY5_9TELE_52670 are exactly identical!
WARNING: Sequences tr_M3ZQD9_M3ZQD9_XIPMA_8083 and tr_A0A087XMN5_A0A087XMN5_POEFO_48698 are exactly identical!
WARNING: Sequences tr_M3ZQD9_M3ZQD9_XIPMA_8083 and tr_A0A2I4B2C0_A0A2I4B2C0_9TELE_52670 are exactly identical!
WARNING: Sequences tr_M3ZYZ0_M3ZYZ0_XIPMA_8083 and tr_A0A087XEY7_A0A087XEY7_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A088A929_A0A088A929_APIME_7460 and tr_A0A158NZ19_A0A158NZ19_ATTCE_12957 are exactly identical!
WARNING: Sequences tr_A0A088A929_A0A088A929_APIME_7460 and tr_A0A151WKF2_A0A151WKF2_9HYME_64791 are exactly identical!
WARNING: Sequences tr_A0A088A929_A0A088A929_APIME_7460 and tr_A0A195EY94_A0A195EY94_9HYME_34720 are exactly identical!
WARNING: Sequences tr_A0A088A929_A0A088A929_APIME_7460 and tr_A0A2A3EAG6_A0A2A3EAG6_APICC_94128 are exactly identical!
WARNING: Sequences tr_H2SKR7_H2SKR7_TAKRU_31033 and tr_H3D871_H3D871_TETNG_99883 are exactly identical!
WARNING: Sequences tr_H0WCX2_H0WCX2_CAVPO_10141 and tr_G5BRF0_G5BRF0_HETGA_10181 are exactly identical!
WARNING: Sequences tr_F5HIW0_F5HIW0_ANOGA_7165 and tr_A0A084WS95_A0A084WS95_ANOSI_74873 are exactly identical!
WARNING: Sequences tr_A0A212FGY9_A0A212FGY9_DANPL_278856 and tr_A0A194RBV0_A0A194RBV0_PAPMA_76193 are exactly identical!
WARNING: Sequences tr_G3TPG0_G3TPG0_LOXAF_9785 and tr_A0A2Y9DIJ3_A0A2Y9DIJ3_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_H0YVU4_H0YVU4_TAEGU_59729 and tr_U3K9M7_U3K9M7_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H0YVU4_H0YVU4_TAEGU_59729 and tr_A0A091EJH5_A0A091EJH5_CORBR_85066 are exactly identical!
WARNING: Sequences tr_H0YVU4_H0YVU4_TAEGU_59729 and tr_A0A093QV59_A0A093QV59_9PASS_328815 are exactly identical!
WARNING: Sequences tr_H0YVU4_H0YVU4_TAEGU_59729 and tr_A0A087R628_A0A087R628_APTFO_9233 are exactly identical!
WARNING: Sequences tr_H0YVU4_H0YVU4_TAEGU_59729 and tr_A0A091WSS1_A0A091WSS1_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_H0YVU4_H0YVU4_TAEGU_59729 and tr_A0A091FM23_A0A091FM23_9AVES_55661 are exactly identical!
WARNING: Sequences tr_H0YVU4_H0YVU4_TAEGU_59729 and tr_A0A0A0A015_A0A0A0A015_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_H0YVU4_H0YVU4_TAEGU_59729 and tr_A0A2I0M585_A0A2I0M585_COLLI_8932 are exactly identical!
WARNING: Sequences tr_H0YVU4_H0YVU4_TAEGU_59729 and tr_A0A093GZK7_A0A093GZK7_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_H0YVU4_H0YVU4_TAEGU_59729 and tr_A0A091II18_A0A091II18_CALAN_9244 are exactly identical!
WARNING: Sequences tr_H0YVU4_H0YVU4_TAEGU_59729 and tr_A0A1V4KRX0_A0A1V4KRX0_PATFA_372326 are exactly identical!
WARNING: Sequences tr_H0YVU4_H0YVU4_TAEGU_59729 and tr_A0A218UZ51_A0A218UZ51_9PASE_299123 are exactly identical!
WARNING: Sequences tr_F4W9U9_F4W9U9_ACREC_103372 and tr_A0A151JP79_A0A151JP79_9HYME_471704 are exactly identical!
WARNING: Sequences tr_F4W9U9_F4W9U9_ACREC_103372 and tr_A0A195BQA4_A0A195BQA4_9HYME_520822 are exactly identical!
WARNING: Sequences tr_L5KN05_L5KN05_PTEAL_9402 and tr_A0A0D9RW06_A0A0D9RW06_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_M3WQ23_M3WQ23_FELCA_9685 and tr_A0A2U3VL51_A0A2U3VL51_ODORO_9708 are exactly identical!
WARNING: Sequences tr_A0A3B1JAS2_A0A3B1JAS2_ASTMX_7994 and tr_A0A2D0SXG7_A0A2D0SXG7_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A096MW36_A0A096MW36_PAPAN_9555 and tr_A0A2K5M726_A0A2K5M726_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A096MW36_A0A096MW36_PAPAN_9555 and tr_A0A2K6AD34_A0A2K6AD34_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A151MTF0_A0A151MTF0_ALLMI_8496 and tr_A0A1U7S4J3_A0A1U7S4J3_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A091F3I9_A0A091F3I9_CORBR_85066 and tr_A0A218UGN4_A0A218UGN4_9PASE_299123 are exactly identical!
WARNING: Sequences tr_A0A1S3T5D1_A0A1S3T5D1_SALSA_8030 and tr_A0A060XVJ8_A0A060XVJ8_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A060Y298_A0A060Y298_ONCMY_8022 and tr_A0A060Y7G5_A0A060Y7G5_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A060Y298_A0A060Y298_ONCMY_8022 and tr_A0A060YCR3_A0A060YCR3_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A2U3V1K0_A0A2U3V1K0_TURTR_9739 and tr_A0A2Y9M1S5_A0A2Y9M1S5_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U3V1K0_A0A2U3V1K0_TURTR_9739 and tr_A0A2Y9ETS2_A0A2Y9ETS2_PHYCD_9755 are exactly identical!
WARNING: Duplicate sequences found: 125

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y3Q4/3_mltree/Q9Y3Q4.raxml.reduced.phy

Alignment comprises 1 partitions and 476 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 476 / 476
Gaps: 21.02 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y3Q4/3_mltree/Q9Y3Q4.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 7 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 718 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 68 / 5440
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -322955.064471] Initial branch length optimization
[00:00:02 -234503.606268] Model parameter optimization (eps = 10.000000)
[00:00:34 -233327.562056] AUTODETECT spr round 1 (radius: 5)
[00:01:23 -177970.150577] AUTODETECT spr round 2 (radius: 10)
[00:02:18 -142205.077889] AUTODETECT spr round 3 (radius: 15)
[00:03:16 -125761.910903] AUTODETECT spr round 4 (radius: 20)
[00:04:26 -117522.053380] AUTODETECT spr round 5 (radius: 25)
[00:06:00 -113464.752501] SPR radius for FAST iterations: 25 (autodetect)
[00:06:00 -113464.752501] Model parameter optimization (eps = 3.000000)
[00:06:25 -112754.253873] FAST spr round 1 (radius: 25)
[00:07:33 -101185.830502] FAST spr round 2 (radius: 25)
[00:08:28 -100516.259544] FAST spr round 3 (radius: 25)
[00:09:19 -100492.504597] FAST spr round 4 (radius: 25)
[00:10:05 -100491.864272] FAST spr round 5 (radius: 25)
[00:10:50 -100489.263205] FAST spr round 6 (radius: 25)
[00:11:34 -100489.262812] Model parameter optimization (eps = 1.000000)
[00:11:48 -100462.623987] SLOW spr round 1 (radius: 5)
[00:12:42 -100444.397258] SLOW spr round 2 (radius: 5)
[00:13:36 -100443.418205] SLOW spr round 3 (radius: 5)
[00:14:27 -100443.417364] SLOW spr round 4 (radius: 10)
[00:15:24 -100442.991169] SLOW spr round 5 (radius: 5)
[00:16:30 -100442.989747] SLOW spr round 6 (radius: 10)
[00:17:36 -100442.989531] SLOW spr round 7 (radius: 15)
[00:19:04 -100442.989321] SLOW spr round 8 (radius: 20)
[00:21:00 -100442.989291] SLOW spr round 9 (radius: 25)
[00:23:18 -100442.989274] Model parameter optimization (eps = 0.100000)

[00:23:26] ML tree search #1, logLikelihood: -100442.759997

[00:23:26 -320175.002020] Initial branch length optimization
[00:23:28 -234894.802612] Model parameter optimization (eps = 10.000000)
[00:24:02 -233738.853301] AUTODETECT spr round 1 (radius: 5)
[00:24:55 -176891.266678] AUTODETECT spr round 2 (radius: 10)
[00:25:54 -143821.727607] AUTODETECT spr round 3 (radius: 15)
[00:26:59 -128590.210378] AUTODETECT spr round 4 (radius: 20)
[00:28:13 -117434.575973] AUTODETECT spr round 5 (radius: 25)
[00:29:40 -110110.404306] SPR radius for FAST iterations: 25 (autodetect)
[00:29:40 -110110.404306] Model parameter optimization (eps = 3.000000)
[00:30:13 -109320.500486] FAST spr round 1 (radius: 25)
[00:31:26 -101447.899638] FAST spr round 2 (radius: 25)
[00:32:26 -100490.300172] FAST spr round 3 (radius: 25)
[00:33:22 -100306.274715] FAST spr round 4 (radius: 25)
[00:34:15 -100298.956594] FAST spr round 5 (radius: 25)
[00:35:04 -100294.976042] FAST spr round 6 (radius: 25)
[00:35:52 -100294.107731] FAST spr round 7 (radius: 25)
[00:36:39 -100294.107730] Model parameter optimization (eps = 1.000000)
[00:36:50 -100289.570376] SLOW spr round 1 (radius: 5)
[00:37:48 -100276.601526] SLOW spr round 2 (radius: 5)
[00:38:47 -100273.967343] SLOW spr round 3 (radius: 5)
[00:39:45 -100273.965911] SLOW spr round 4 (radius: 10)
[00:40:49 -100273.611926] SLOW spr round 5 (radius: 5)
[00:41:59 -100273.610752] SLOW spr round 6 (radius: 10)
[00:43:10 -100273.610644] SLOW spr round 7 (radius: 15)
[00:44:38 -100273.610631] SLOW spr round 8 (radius: 20)
[00:46:44 -100273.610628] SLOW spr round 9 (radius: 25)
[00:49:14 -100273.610626] Model parameter optimization (eps = 0.100000)

[00:49:19] ML tree search #2, logLikelihood: -100273.603061

[00:49:19 -321966.079343] Initial branch length optimization
[00:49:21 -236164.781368] Model parameter optimization (eps = 10.000000)
[00:49:54 -235030.174533] AUTODETECT spr round 1 (radius: 5)
[00:50:48 -175312.676843] AUTODETECT spr round 2 (radius: 10)
[00:51:47 -145240.051486] AUTODETECT spr round 3 (radius: 15)
[00:52:51 -130588.644146] AUTODETECT spr round 4 (radius: 20)
[00:54:05 -121452.619443] AUTODETECT spr round 5 (radius: 25)
[00:55:21 -120349.256110] SPR radius for FAST iterations: 25 (autodetect)
[00:55:21 -120349.256110] Model parameter optimization (eps = 3.000000)
[00:55:49 -119692.684440] FAST spr round 1 (radius: 25)
[00:57:05 -103785.811138] FAST spr round 2 (radius: 25)
[00:58:05 -100544.650790] FAST spr round 3 (radius: 25)
[00:59:02 -100342.707760] FAST spr round 4 (radius: 25)
[00:59:54 -100332.093906] FAST spr round 5 (radius: 25)
[01:00:42 -100332.091493] Model parameter optimization (eps = 1.000000)
[01:00:55 -100310.572322] SLOW spr round 1 (radius: 5)
[01:01:54 -100294.266355] SLOW spr round 2 (radius: 5)
[01:02:52 -100293.984828] SLOW spr round 3 (radius: 5)
[01:03:47 -100293.357237] SLOW spr round 4 (radius: 5)
[01:04:43 -100293.355851] SLOW spr round 5 (radius: 10)
[01:05:43 -100293.146789] SLOW spr round 6 (radius: 5)
[01:06:49 -100293.145652] SLOW spr round 7 (radius: 10)
[01:07:53 -100293.145207] SLOW spr round 8 (radius: 15)
[01:09:12 -100293.144891] SLOW spr round 9 (radius: 20)
[01:11:00 -100293.144633] SLOW spr round 10 (radius: 25)
[01:13:12 -100290.508418] SLOW spr round 11 (radius: 5)
[01:14:23 -100290.508080] SLOW spr round 12 (radius: 10)
[01:15:33 -100286.955052] SLOW spr round 13 (radius: 5)
[01:16:36 -100286.667929] SLOW spr round 14 (radius: 5)
[01:17:34 -100286.606533] SLOW spr round 15 (radius: 10)
[01:18:32 -100286.606459] SLOW spr round 16 (radius: 15)
[01:19:52 -100286.606459] SLOW spr round 17 (radius: 20)
[01:21:39 -100286.606459] SLOW spr round 18 (radius: 25)
[01:23:50 -100286.606459] Model parameter optimization (eps = 0.100000)

[01:23:55] ML tree search #3, logLikelihood: -100286.572703

[01:23:55 -323405.175176] Initial branch length optimization
[01:23:57 -236344.034551] Model parameter optimization (eps = 10.000000)
[01:24:28 -235203.284943] AUTODETECT spr round 1 (radius: 5)
[01:25:16 -175686.096147] AUTODETECT spr round 2 (radius: 10)
[01:26:10 -142867.977726] AUTODETECT spr round 3 (radius: 15)
[01:27:10 -129588.718988] AUTODETECT spr round 4 (radius: 20)
[01:28:25 -119593.188929] AUTODETECT spr round 5 (radius: 25)
[01:30:03 -113774.156380] SPR radius for FAST iterations: 25 (autodetect)
[01:30:03 -113774.156380] Model parameter optimization (eps = 3.000000)
[01:30:31 -112964.101170] FAST spr round 1 (radius: 25)
[01:31:43 -102049.710757] FAST spr round 2 (radius: 25)
[01:32:39 -100464.573587] FAST spr round 3 (radius: 25)
[01:33:32 -100356.219954] FAST spr round 4 (radius: 25)
[01:34:20 -100338.458807] FAST spr round 5 (radius: 25)
[01:35:06 -100333.213681] FAST spr round 6 (radius: 25)
[01:35:50 -100332.222690] FAST spr round 7 (radius: 25)
[01:36:34 -100332.222451] Model parameter optimization (eps = 1.000000)
[01:36:48 -100310.137144] SLOW spr round 1 (radius: 5)
[01:37:43 -100296.487943] SLOW spr round 2 (radius: 5)
[01:38:38 -100294.307024] SLOW spr round 3 (radius: 5)
[01:39:33 -100294.306381] SLOW spr round 4 (radius: 10)
[01:40:32 -100286.191007] SLOW spr round 5 (radius: 5)
[01:41:37 -100285.661304] SLOW spr round 6 (radius: 5)
[01:42:36 -100285.661169] SLOW spr round 7 (radius: 10)
[01:43:35 -100285.416027] SLOW spr round 8 (radius: 5)
[01:44:37 -100285.415432] SLOW spr round 9 (radius: 10)
[01:45:40 -100281.853352] SLOW spr round 10 (radius: 5)
[01:46:41 -100281.846469] SLOW spr round 11 (radius: 10)
[01:47:42 -100281.846465] SLOW spr round 12 (radius: 15)
[01:49:01 -100281.134770] SLOW spr round 13 (radius: 5)
[01:50:08 -100280.984145] SLOW spr round 14 (radius: 5)
[01:51:08 -100280.984127] SLOW spr round 15 (radius: 10)
[01:52:07 -100280.984127] SLOW spr round 16 (radius: 15)
[01:53:26 -100280.984126] SLOW spr round 17 (radius: 20)
[01:55:20 -100280.984126] SLOW spr round 18 (radius: 25)
[01:57:45 -100280.984126] Model parameter optimization (eps = 0.100000)

[01:57:52] ML tree search #4, logLikelihood: -100280.794707

[01:57:52 -321299.340256] Initial branch length optimization
[01:57:53 -235918.220993] Model parameter optimization (eps = 10.000000)
[01:58:25 -234720.749658] AUTODETECT spr round 1 (radius: 5)
[01:59:16 -174590.845540] AUTODETECT spr round 2 (radius: 10)
[02:00:11 -140262.133118] AUTODETECT spr round 3 (radius: 15)
[02:01:10 -127160.349428] AUTODETECT spr round 4 (radius: 20)
[02:02:20 -121962.589556] AUTODETECT spr round 5 (radius: 25)
[02:03:37 -115952.924617] SPR radius for FAST iterations: 25 (autodetect)
[02:03:37 -115952.924617] Model parameter optimization (eps = 3.000000)
[02:04:05 -115175.312897] FAST spr round 1 (radius: 25)
[02:05:16 -101385.198470] FAST spr round 2 (radius: 25)
[02:06:14 -100424.833119] FAST spr round 3 (radius: 25)
[02:07:07 -100343.999700] FAST spr round 4 (radius: 25)
[02:07:55 -100325.922451] FAST spr round 5 (radius: 25)
[02:08:40 -100325.920888] Model parameter optimization (eps = 1.000000)
[02:08:52 -100310.328201] SLOW spr round 1 (radius: 5)
[02:09:48 -100291.558162] SLOW spr round 2 (radius: 5)
[02:10:42 -100289.619183] SLOW spr round 3 (radius: 5)
[02:11:36 -100287.811972] SLOW spr round 4 (radius: 5)
[02:12:30 -100287.811687] SLOW spr round 5 (radius: 10)
[02:13:29 -100282.392173] SLOW spr round 6 (radius: 5)
[02:14:36 -100282.391063] SLOW spr round 7 (radius: 10)
[02:15:40 -100282.145999] SLOW spr round 8 (radius: 5)
[02:16:44 -100282.145303] SLOW spr round 9 (radius: 10)
[02:17:48 -100282.145226] SLOW spr round 10 (radius: 15)
[02:19:09 -100281.313824] SLOW spr round 11 (radius: 5)
[02:20:19 -100280.980357] SLOW spr round 12 (radius: 5)
[02:21:19 -100280.980337] SLOW spr round 13 (radius: 10)
[02:22:19 -100280.980334] SLOW spr round 14 (radius: 15)
[02:23:40 -100280.980334] SLOW spr round 15 (radius: 20)
[02:25:40 -100280.623856] SLOW spr round 16 (radius: 5)
[02:26:50 -100280.618138] SLOW spr round 17 (radius: 10)
[02:27:58 -100280.616930] SLOW spr round 18 (radius: 15)
[02:29:17 -100280.616724] SLOW spr round 19 (radius: 20)
[02:31:16 -100280.616686] SLOW spr round 20 (radius: 25)
[02:33:39 -100278.208492] SLOW spr round 21 (radius: 5)
[02:34:50 -100278.207915] SLOW spr round 22 (radius: 10)
[02:35:57 -100278.207902] SLOW spr round 23 (radius: 15)
[02:37:16 -100278.207899] SLOW spr round 24 (radius: 20)
[02:39:13 -100278.207897] SLOW spr round 25 (radius: 25)
[02:41:33 -100278.207896] Model parameter optimization (eps = 0.100000)

[02:41:40] ML tree search #5, logLikelihood: -100277.728807

[02:41:40 -320849.765164] Initial branch length optimization
[02:41:42 -235761.827291] Model parameter optimization (eps = 10.000000)
[02:42:15 -234608.086118] AUTODETECT spr round 1 (radius: 5)
[02:43:03 -174736.835701] AUTODETECT spr round 2 (radius: 10)
[02:43:56 -141910.020252] AUTODETECT spr round 3 (radius: 15)
[02:44:56 -124997.385267] AUTODETECT spr round 4 (radius: 20)
[02:46:04 -114434.582485] AUTODETECT spr round 5 (radius: 25)
[02:47:23 -111031.848856] SPR radius for FAST iterations: 25 (autodetect)
[02:47:23 -111031.848856] Model parameter optimization (eps = 3.000000)
[02:47:51 -110233.741291] FAST spr round 1 (radius: 25)
[02:48:56 -100827.680508] FAST spr round 2 (radius: 25)
[02:49:50 -100322.895263] FAST spr round 3 (radius: 25)
[02:50:41 -100309.976448] FAST spr round 4 (radius: 25)
[02:51:30 -100309.960950] Model parameter optimization (eps = 1.000000)
[02:51:42 -100293.479078] SLOW spr round 1 (radius: 5)
[02:52:41 -100280.222336] SLOW spr round 2 (radius: 5)
[02:53:34 -100280.220090] SLOW spr round 3 (radius: 10)
[02:54:32 -100279.680128] SLOW spr round 4 (radius: 5)
[02:55:37 -100279.679507] SLOW spr round 5 (radius: 10)
[02:56:41 -100279.679009] SLOW spr round 6 (radius: 15)
[02:58:02 -100274.431014] SLOW spr round 7 (radius: 5)
[02:59:11 -100274.430741] SLOW spr round 8 (radius: 10)
[03:00:18 -100274.430553] SLOW spr round 9 (radius: 15)
[03:01:39 -100274.430392] SLOW spr round 10 (radius: 20)
[03:03:38 -100273.656963] SLOW spr round 11 (radius: 5)
[03:04:49 -100272.316633] SLOW spr round 12 (radius: 5)
[03:05:51 -100270.252016] SLOW spr round 13 (radius: 5)
[03:06:48 -100270.129590] SLOW spr round 14 (radius: 5)
[03:07:42 -100270.127228] SLOW spr round 15 (radius: 10)
[03:08:40 -100270.126793] SLOW spr round 16 (radius: 15)
[03:10:05 -100270.126490] SLOW spr round 17 (radius: 20)
[03:12:06 -100270.126385] SLOW spr round 18 (radius: 25)
[03:14:31 -100270.126310] Model parameter optimization (eps = 0.100000)

[03:14:34] ML tree search #6, logLikelihood: -100270.084147

[03:14:34 -319893.533715] Initial branch length optimization
[03:14:37 -233952.715758] Model parameter optimization (eps = 10.000000)
[03:15:09 -232840.692400] AUTODETECT spr round 1 (radius: 5)
[03:16:00 -179125.692520] AUTODETECT spr round 2 (radius: 10)
[03:16:57 -139952.737466] AUTODETECT spr round 3 (radius: 15)
[03:17:59 -123436.112537] AUTODETECT spr round 4 (radius: 20)
[03:19:09 -115381.996386] AUTODETECT spr round 5 (radius: 25)
[03:20:26 -113452.436274] SPR radius for FAST iterations: 25 (autodetect)
[03:20:26 -113452.436274] Model parameter optimization (eps = 3.000000)
[03:20:52 -112669.645467] FAST spr round 1 (radius: 25)
[03:22:03 -101172.686041] FAST spr round 2 (radius: 25)
[03:22:59 -100539.983821] FAST spr round 3 (radius: 25)
[03:23:51 -100330.172773] FAST spr round 4 (radius: 25)
[03:24:37 -100330.171469] Model parameter optimization (eps = 1.000000)
[03:24:47 -100314.910609] SLOW spr round 1 (radius: 5)
[03:25:45 -100292.517961] SLOW spr round 2 (radius: 5)
[03:26:40 -100289.998164] SLOW spr round 3 (radius: 5)
[03:27:33 -100289.997937] SLOW spr round 4 (radius: 10)
[03:28:31 -100288.022332] SLOW spr round 5 (radius: 5)
[03:29:35 -100288.021382] SLOW spr round 6 (radius: 10)
[03:30:38 -100287.774069] SLOW spr round 7 (radius: 5)
[03:31:40 -100287.773496] SLOW spr round 8 (radius: 10)
[03:32:42 -100287.773412] SLOW spr round 9 (radius: 15)
[03:34:03 -100282.348233] SLOW spr round 10 (radius: 5)
[03:35:11 -100281.638545] SLOW spr round 11 (radius: 5)
[03:36:11 -100281.638474] SLOW spr round 12 (radius: 10)
[03:37:11 -100281.638443] SLOW spr round 13 (radius: 15)
[03:38:34 -100281.638436] SLOW spr round 14 (radius: 20)
[03:40:40 -100281.545802] SLOW spr round 15 (radius: 25)
[03:43:11 -100281.545739] Model parameter optimization (eps = 0.100000)

[03:43:18] ML tree search #7, logLikelihood: -100281.399956

[03:43:18 -321192.788347] Initial branch length optimization
[03:43:20 -235564.543202] Model parameter optimization (eps = 10.000000)
[03:43:49 -234381.517886] AUTODETECT spr round 1 (radius: 5)
[03:44:38 -179615.261341] AUTODETECT spr round 2 (radius: 10)
[03:45:33 -136664.367387] AUTODETECT spr round 3 (radius: 15)
[03:46:34 -122562.344790] AUTODETECT spr round 4 (radius: 20)
[03:47:41 -113762.229696] AUTODETECT spr round 5 (radius: 25)
[03:48:55 -112111.856254] SPR radius for FAST iterations: 25 (autodetect)
[03:48:55 -112111.856254] Model parameter optimization (eps = 3.000000)
[03:49:22 -111309.624159] FAST spr round 1 (radius: 25)
[03:50:27 -102166.962922] FAST spr round 2 (radius: 25)
[03:51:22 -100580.339363] FAST spr round 3 (radius: 25)
[03:52:13 -100416.308615] FAST spr round 4 (radius: 25)
[03:53:00 -100318.881350] FAST spr round 5 (radius: 25)
[03:53:46 -100318.879779] Model parameter optimization (eps = 1.000000)
[03:53:58 -100303.612524] SLOW spr round 1 (radius: 5)
[03:54:54 -100283.969354] SLOW spr round 2 (radius: 5)
[03:55:50 -100280.308954] SLOW spr round 3 (radius: 5)
[03:56:44 -100280.305811] SLOW spr round 4 (radius: 10)
[03:57:42 -100280.114018] SLOW spr round 5 (radius: 5)
[03:58:47 -100280.113661] SLOW spr round 6 (radius: 10)
[03:59:52 -100280.113593] SLOW spr round 7 (radius: 15)
[04:01:14 -100277.472758] SLOW spr round 8 (radius: 5)
[04:02:23 -100277.472418] SLOW spr round 9 (radius: 10)
[04:03:31 -100273.834911] SLOW spr round 10 (radius: 5)
[04:04:35 -100273.483865] SLOW spr round 11 (radius: 5)
[04:05:33 -100273.483255] SLOW spr round 12 (radius: 10)
[04:06:33 -100273.483250] SLOW spr round 13 (radius: 15)
[04:07:57 -100273.483246] SLOW spr round 14 (radius: 20)
[04:09:56 -100273.483242] SLOW spr round 15 (radius: 25)
[04:12:30 -100273.483238] Model parameter optimization (eps = 0.100000)

[04:12:35] ML tree search #8, logLikelihood: -100273.443315

[04:12:35 -323227.917515] Initial branch length optimization
[04:12:37 -235274.341906] Model parameter optimization (eps = 10.000000)
[04:13:09 -234116.016130] AUTODETECT spr round 1 (radius: 5)
[04:14:00 -171158.482820] AUTODETECT spr round 2 (radius: 10)
[04:14:54 -140781.121355] AUTODETECT spr round 3 (radius: 15)
[04:15:55 -129390.040333] AUTODETECT spr round 4 (radius: 20)
[04:17:07 -115693.181223] AUTODETECT spr round 5 (radius: 25)
[04:18:36 -111390.642011] SPR radius for FAST iterations: 25 (autodetect)
[04:18:36 -111390.642011] Model parameter optimization (eps = 3.000000)
[04:19:07 -110609.477516] FAST spr round 1 (radius: 25)
[04:20:17 -101534.914937] FAST spr round 2 (radius: 25)
[04:21:12 -100662.666443] FAST spr round 3 (radius: 25)
[04:22:07 -100330.103567] FAST spr round 4 (radius: 25)
[04:22:55 -100303.254344] FAST spr round 5 (radius: 25)
[04:23:40 -100300.770748] FAST spr round 6 (radius: 25)
[04:24:23 -100300.769869] Model parameter optimization (eps = 1.000000)
[04:24:34 -100294.080192] SLOW spr round 1 (radius: 5)
[04:25:30 -100281.890643] SLOW spr round 2 (radius: 5)
[04:26:24 -100281.384015] SLOW spr round 3 (radius: 5)
[04:27:18 -100281.382089] SLOW spr round 4 (radius: 10)
[04:28:17 -100278.908353] SLOW spr round 5 (radius: 5)
[04:29:23 -100278.884242] SLOW spr round 6 (radius: 10)
[04:30:27 -100278.882399] SLOW spr round 7 (radius: 15)
[04:31:47 -100278.882305] SLOW spr round 8 (radius: 20)
[04:33:40 -100278.882280] SLOW spr round 9 (radius: 25)
[04:35:57 -100278.882273] Model parameter optimization (eps = 0.100000)

[04:36:00] ML tree search #9, logLikelihood: -100278.869933

[04:36:00 -319254.619175] Initial branch length optimization
[04:36:02 -233313.662458] Model parameter optimization (eps = 10.000000)
[04:36:30 -232184.919454] AUTODETECT spr round 1 (radius: 5)
[04:37:22 -174667.940746] AUTODETECT spr round 2 (radius: 10)
[04:38:21 -144147.893497] AUTODETECT spr round 3 (radius: 15)
[04:39:22 -129134.671468] AUTODETECT spr round 4 (radius: 20)
[04:40:32 -116722.654073] AUTODETECT spr round 5 (radius: 25)
[04:41:54 -112624.686086] SPR radius for FAST iterations: 25 (autodetect)
[04:41:54 -112624.686086] Model parameter optimization (eps = 3.000000)
[04:42:21 -111827.367085] FAST spr round 1 (radius: 25)
[04:43:28 -100994.011487] FAST spr round 2 (radius: 25)
[04:44:23 -100364.042725] FAST spr round 3 (radius: 25)
[04:45:13 -100324.125297] FAST spr round 4 (radius: 25)
[04:46:00 -100313.085016] FAST spr round 5 (radius: 25)
[04:46:43 -100313.081688] Model parameter optimization (eps = 1.000000)
[04:46:54 -100291.231201] SLOW spr round 1 (radius: 5)
[04:47:48 -100272.257807] SLOW spr round 2 (radius: 5)
[04:48:41 -100270.178938] SLOW spr round 3 (radius: 5)
[04:49:32 -100270.176767] SLOW spr round 4 (radius: 10)
[04:50:28 -100265.874206] SLOW spr round 5 (radius: 5)
[04:51:31 -100265.873968] SLOW spr round 6 (radius: 10)
[04:52:32 -100265.873909] SLOW spr round 7 (radius: 15)
[04:53:49 -100265.873862] SLOW spr round 8 (radius: 20)
[04:55:41 -100265.873848] SLOW spr round 9 (radius: 25)
[04:58:07 -100265.873839] Model parameter optimization (eps = 0.100000)

[04:58:10] ML tree search #10, logLikelihood: -100265.846924

[04:58:10 -322716.046144] Initial branch length optimization
[04:58:12 -235362.853802] Model parameter optimization (eps = 10.000000)
[04:58:45 -234222.475246] AUTODETECT spr round 1 (radius: 5)
[04:59:36 -172148.367453] AUTODETECT spr round 2 (radius: 10)
[05:00:32 -144826.187731] AUTODETECT spr round 3 (radius: 15)
[05:01:34 -126916.346368] AUTODETECT spr round 4 (radius: 20)
[05:02:40 -119886.692187] AUTODETECT spr round 5 (radius: 25)
[05:04:08 -114413.229515] SPR radius for FAST iterations: 25 (autodetect)
[05:04:08 -114413.229515] Model parameter optimization (eps = 3.000000)
[05:04:44 -113680.310102] FAST spr round 1 (radius: 25)
[05:05:52 -101276.701203] FAST spr round 2 (radius: 25)
[05:06:48 -100374.928686] FAST spr round 3 (radius: 25)
[05:07:42 -100326.773554] FAST spr round 4 (radius: 25)
[05:08:30 -100319.274666] FAST spr round 5 (radius: 25)
[05:09:14 -100319.274525] Model parameter optimization (eps = 1.000000)
[05:09:25 -100299.471785] SLOW spr round 1 (radius: 5)
[05:10:20 -100278.408574] SLOW spr round 2 (radius: 5)
[05:11:16 -100275.322702] SLOW spr round 3 (radius: 5)
[05:12:09 -100275.321099] SLOW spr round 4 (radius: 10)
[05:13:07 -100274.611902] SLOW spr round 5 (radius: 5)
[05:14:12 -100274.459827] SLOW spr round 6 (radius: 5)
[05:15:11 -100274.459692] SLOW spr round 7 (radius: 10)
[05:16:11 -100274.459615] SLOW spr round 8 (radius: 15)
[05:17:36 -100274.079042] SLOW spr round 9 (radius: 5)
[05:18:44 -100274.075170] SLOW spr round 10 (radius: 10)
[05:19:52 -100274.074811] SLOW spr round 11 (radius: 15)
[05:21:15 -100267.756517] SLOW spr round 12 (radius: 5)
[05:22:24 -100267.399656] SLOW spr round 13 (radius: 5)
[05:23:26 -100267.398840] SLOW spr round 14 (radius: 10)
[05:24:27 -100267.398838] SLOW spr round 15 (radius: 15)
[05:25:49 -100267.398832] SLOW spr round 16 (radius: 20)
[05:27:47 -100267.290319] SLOW spr round 17 (radius: 5)
[05:28:57 -100267.093383] SLOW spr round 18 (radius: 5)
[05:30:00 -100267.093382] SLOW spr round 19 (radius: 10)
[05:31:01 -100267.093382] SLOW spr round 20 (radius: 15)
[05:32:23 -100267.093382] SLOW spr round 21 (radius: 20)
[05:34:19 -100267.093382] SLOW spr round 22 (radius: 25)
[05:36:45 -100267.093382] Model parameter optimization (eps = 0.100000)

[05:36:49] ML tree search #11, logLikelihood: -100267.044360

[05:36:49 -323363.107150] Initial branch length optimization
[05:36:51 -235288.327285] Model parameter optimization (eps = 10.000000)
[05:37:21 -234169.003656] AUTODETECT spr round 1 (radius: 5)
[05:38:09 -180134.784075] AUTODETECT spr round 2 (radius: 10)
[05:39:03 -142204.663515] AUTODETECT spr round 3 (radius: 15)
[05:40:02 -125575.907331] AUTODETECT spr round 4 (radius: 20)
[05:41:09 -114886.908812] AUTODETECT spr round 5 (radius: 25)
[05:42:23 -112532.415952] SPR radius for FAST iterations: 25 (autodetect)
[05:42:23 -112532.415952] Model parameter optimization (eps = 3.000000)
[05:42:52 -111691.035747] FAST spr round 1 (radius: 25)
[05:44:01 -101547.953615] FAST spr round 2 (radius: 25)
[05:44:54 -100396.713804] FAST spr round 3 (radius: 25)
[05:45:43 -100341.303215] FAST spr round 4 (radius: 25)
[05:46:31 -100330.590232] FAST spr round 5 (radius: 25)
[05:47:18 -100327.074097] FAST spr round 6 (radius: 25)
[05:48:03 -100324.325607] FAST spr round 7 (radius: 25)
[05:48:46 -100324.324913] Model parameter optimization (eps = 1.000000)
[05:48:57 -100310.170411] SLOW spr round 1 (radius: 5)
[05:49:52 -100285.287988] SLOW spr round 2 (radius: 5)
[05:50:47 -100281.025527] SLOW spr round 3 (radius: 5)
[05:51:40 -100279.826452] SLOW spr round 4 (radius: 5)
[05:52:32 -100279.826394] SLOW spr round 5 (radius: 10)
[05:53:29 -100278.708227] SLOW spr round 6 (radius: 5)
[05:54:34 -100278.708054] SLOW spr round 7 (radius: 10)
[05:55:38 -100278.708028] SLOW spr round 8 (radius: 15)
[05:56:58 -100278.708021] SLOW spr round 9 (radius: 20)
[05:59:01 -100278.708017] SLOW spr round 10 (radius: 25)
[06:01:26 -100278.589436] SLOW spr round 11 (radius: 5)
[06:02:37 -100278.589349] SLOW spr round 12 (radius: 10)
[06:03:46 -100278.589343] SLOW spr round 13 (radius: 15)
[06:05:04 -100278.589340] SLOW spr round 14 (radius: 20)
[06:06:59 -100278.589337] SLOW spr round 15 (radius: 25)
[06:09:13 -100278.479809] SLOW spr round 16 (radius: 5)
[06:10:24 -100278.282742] SLOW spr round 17 (radius: 5)
[06:11:27 -100278.282731] SLOW spr round 18 (radius: 10)
[06:12:29 -100278.282728] SLOW spr round 19 (radius: 15)
[06:13:47 -100278.282726] SLOW spr round 20 (radius: 20)
[06:15:41 -100278.282723] SLOW spr round 21 (radius: 25)
[06:17:54 -100278.282721] Model parameter optimization (eps = 0.100000)

[06:17:58] ML tree search #12, logLikelihood: -100278.262176

[06:17:58 -320086.315658] Initial branch length optimization
[06:17:59 -234601.178982] Model parameter optimization (eps = 10.000000)
[06:18:29 -233486.963323] AUTODETECT spr round 1 (radius: 5)
[06:19:20 -175131.273981] AUTODETECT spr round 2 (radius: 10)
[06:20:15 -141199.937485] AUTODETECT spr round 3 (radius: 15)
[06:21:19 -123650.549442] AUTODETECT spr round 4 (radius: 20)
[06:22:21 -117208.195763] AUTODETECT spr round 5 (radius: 25)
[06:23:37 -112068.091407] SPR radius for FAST iterations: 25 (autodetect)
[06:23:37 -112068.091407] Model parameter optimization (eps = 3.000000)
[06:24:07 -111312.968301] FAST spr round 1 (radius: 25)
[06:25:15 -101207.090012] FAST spr round 2 (radius: 25)
[06:26:11 -100391.237853] FAST spr round 3 (radius: 25)
[06:27:01 -100355.364479] FAST spr round 4 (radius: 25)
[06:27:48 -100352.345243] FAST spr round 5 (radius: 25)
[06:28:33 -100351.650127] FAST spr round 6 (radius: 25)
[06:29:18 -100335.646505] FAST spr round 7 (radius: 25)
[06:30:00 -100335.644941] Model parameter optimization (eps = 1.000000)
[06:30:11 -100315.811716] SLOW spr round 1 (radius: 5)
[06:31:04 -100290.713831] SLOW spr round 2 (radius: 5)
[06:31:57 -100286.594968] SLOW spr round 3 (radius: 5)
[06:32:51 -100285.416381] SLOW spr round 4 (radius: 5)
[06:33:43 -100285.416036] SLOW spr round 5 (radius: 10)
[06:34:41 -100284.162843] SLOW spr round 6 (radius: 5)
[06:35:43 -100284.162761] SLOW spr round 7 (radius: 10)
[06:36:46 -100283.960064] SLOW spr round 8 (radius: 5)
[06:37:47 -100283.959902] SLOW spr round 9 (radius: 10)
[06:38:49 -100283.959879] SLOW spr round 10 (radius: 15)
[06:40:09 -100282.590933] SLOW spr round 11 (radius: 5)
[06:41:15 -100280.502215] SLOW spr round 12 (radius: 5)
[06:42:13 -100280.501642] SLOW spr round 13 (radius: 10)
[06:43:13 -100276.883223] SLOW spr round 14 (radius: 5)
[06:44:15 -100276.532678] SLOW spr round 15 (radius: 5)
[06:45:11 -100276.532068] SLOW spr round 16 (radius: 10)
[06:46:01 -100276.532064] SLOW spr round 17 (radius: 15)
[06:47:10 -100276.532061] SLOW spr round 18 (radius: 20)
[06:48:46 -100276.483351] SLOW spr round 19 (radius: 25)
[06:50:39 -100276.483256] Model parameter optimization (eps = 0.100000)

[06:50:44] ML tree search #13, logLikelihood: -100276.362544

[06:50:44 -320432.935023] Initial branch length optimization
[06:50:45 -234373.402267] Model parameter optimization (eps = 10.000000)
[06:51:14 -233249.711457] AUTODETECT spr round 1 (radius: 5)
[06:51:55 -173208.547363] AUTODETECT spr round 2 (radius: 10)
[06:52:41 -142750.038692] AUTODETECT spr round 3 (radius: 15)
[06:53:31 -129648.630800] AUTODETECT spr round 4 (radius: 20)
[06:54:34 -122344.621520] AUTODETECT spr round 5 (radius: 25)
[06:55:39 -118333.154931] SPR radius for FAST iterations: 25 (autodetect)
[06:55:39 -118333.154931] Model parameter optimization (eps = 3.000000)
[06:56:01 -117431.244017] FAST spr round 1 (radius: 25)
[06:57:05 -102933.167105] FAST spr round 2 (radius: 25)
[06:57:59 -100464.174117] FAST spr round 3 (radius: 25)
[06:58:45 -100336.825879] FAST spr round 4 (radius: 25)
[06:59:25 -100326.307286] FAST spr round 5 (radius: 25)
[07:00:02 -100326.305954] Model parameter optimization (eps = 1.000000)
[07:00:12 -100308.073080] SLOW spr round 1 (radius: 5)
[07:00:59 -100298.133251] SLOW spr round 2 (radius: 5)
[07:01:44 -100297.855801] SLOW spr round 3 (radius: 5)
[07:02:28 -100297.855468] SLOW spr round 4 (radius: 10)
[07:03:17 -100292.598382] SLOW spr round 5 (radius: 5)
[07:04:12 -100289.185005] SLOW spr round 6 (radius: 5)
[07:05:01 -100289.183559] SLOW spr round 7 (radius: 10)
[07:05:51 -100288.944649] SLOW spr round 8 (radius: 5)
[07:06:44 -100288.939884] SLOW spr round 9 (radius: 10)
[07:07:36 -100288.938344] SLOW spr round 10 (radius: 15)
[07:08:44 -100288.561619] SLOW spr round 11 (radius: 5)
[07:09:41 -100288.559624] SLOW spr round 12 (radius: 10)
[07:10:37 -100288.559318] SLOW spr round 13 (radius: 15)
[07:11:45 -100285.918201] SLOW spr round 14 (radius: 5)
[07:12:42 -100282.295542] SLOW spr round 15 (radius: 5)
[07:13:33 -100281.945555] SLOW spr round 16 (radius: 5)
[07:14:20 -100281.944664] SLOW spr round 17 (radius: 10)
[07:15:09 -100281.944645] SLOW spr round 18 (radius: 15)
[07:16:18 -100280.869155] SLOW spr round 19 (radius: 5)
[07:17:15 -100280.630822] SLOW spr round 20 (radius: 5)
[07:18:05 -100280.630669] SLOW spr round 21 (radius: 10)
[07:18:56 -100280.630664] SLOW spr round 22 (radius: 15)
[07:20:03 -100280.630660] SLOW spr round 23 (radius: 20)
[07:21:33 -100280.630657] SLOW spr round 24 (radius: 25)
[07:23:22 -100280.630654] Model parameter optimization (eps = 0.100000)

[07:23:24] ML tree search #14, logLikelihood: -100280.617051

[07:23:25 -322016.908299] Initial branch length optimization
[07:23:26 -236608.995558] Model parameter optimization (eps = 10.000000)
[07:23:52 -235474.335517] AUTODETECT spr round 1 (radius: 5)
[07:24:33 -176416.890132] AUTODETECT spr round 2 (radius: 10)
[07:25:19 -141712.588691] AUTODETECT spr round 3 (radius: 15)
[07:26:09 -122746.232899] AUTODETECT spr round 4 (radius: 20)
[07:27:10 -114712.817197] AUTODETECT spr round 5 (radius: 25)
[07:28:13 -112872.693188] SPR radius for FAST iterations: 25 (autodetect)
[07:28:13 -112872.693188] Model parameter optimization (eps = 3.000000)
[07:28:36 -112072.400562] FAST spr round 1 (radius: 25)
[07:29:33 -101481.739387] FAST spr round 2 (radius: 25)
[07:30:21 -100530.961621] FAST spr round 3 (radius: 25)
[07:31:03 -100452.173848] FAST spr round 4 (radius: 25)
[07:31:44 -100365.915766] FAST spr round 5 (radius: 25)
[07:32:22 -100362.736304] FAST spr round 6 (radius: 25)
[07:32:59 -100362.735696] Model parameter optimization (eps = 1.000000)
[07:33:09 -100350.303981] SLOW spr round 1 (radius: 5)
[07:33:58 -100341.870142] SLOW spr round 2 (radius: 5)
[07:34:47 -100339.791672] SLOW spr round 3 (radius: 5)
[07:35:34 -100339.706866] SLOW spr round 4 (radius: 10)
[07:36:26 -100332.908861] SLOW spr round 5 (radius: 5)
[07:37:29 -100332.833700] SLOW spr round 6 (radius: 10)
[07:38:29 -100332.628865] SLOW spr round 7 (radius: 5)
[07:39:28 -100332.628671] SLOW spr round 8 (radius: 10)
[07:40:24 -100332.628640] SLOW spr round 9 (radius: 15)
[07:41:34 -100332.628628] SLOW spr round 10 (radius: 20)
[07:43:06 -100332.246632] SLOW spr round 11 (radius: 5)
[07:44:08 -100332.242491] SLOW spr round 12 (radius: 10)
[07:45:10 -100332.242259] SLOW spr round 13 (radius: 15)
[07:46:21 -100332.241965] SLOW spr round 14 (radius: 20)
[07:47:53 -100332.241953] SLOW spr round 15 (radius: 25)
[07:49:48 -100325.413139] SLOW spr round 16 (radius: 5)
[07:50:50 -100325.405318] SLOW spr round 17 (radius: 10)
[07:51:52 -100323.598137] SLOW spr round 18 (radius: 5)
[07:52:48 -100323.281096] SLOW spr round 19 (radius: 5)
[07:53:40 -100323.280908] SLOW spr round 20 (radius: 10)
[07:54:31 -100323.280904] SLOW spr round 21 (radius: 15)
[07:55:43 -100323.280900] SLOW spr round 22 (radius: 20)
[07:57:17 -100302.891855] SLOW spr round 23 (radius: 5)
[07:58:20 -100291.233235] SLOW spr round 24 (radius: 5)
[07:59:15 -100282.864825] SLOW spr round 25 (radius: 5)
[08:00:06 -100281.479440] SLOW spr round 26 (radius: 5)
[08:00:53 -100281.477618] SLOW spr round 27 (radius: 10)
[08:01:44 -100280.400326] SLOW spr round 28 (radius: 5)
[08:02:41 -100280.397447] SLOW spr round 29 (radius: 10)
[08:03:37 -100280.396361] SLOW spr round 30 (radius: 15)
[08:04:48 -100280.395961] SLOW spr round 31 (radius: 20)
[08:06:24 -100280.395814] SLOW spr round 32 (radius: 25)
[08:08:27 -100280.395760] Model parameter optimization (eps = 0.100000)

[08:08:30] ML tree search #15, logLikelihood: -100280.318522

[08:08:30 -321212.835683] Initial branch length optimization
[08:08:32 -234874.489819] Model parameter optimization (eps = 10.000000)
[08:08:58 -233712.745735] AUTODETECT spr round 1 (radius: 5)
[08:09:43 -175859.201921] AUTODETECT spr round 2 (radius: 10)
[08:10:33 -143035.835112] AUTODETECT spr round 3 (radius: 15)
[08:11:30 -117280.041084] AUTODETECT spr round 4 (radius: 20)
[08:12:40 -112097.757219] AUTODETECT spr round 5 (radius: 25)
[08:14:08 -109652.243935] SPR radius for FAST iterations: 25 (autodetect)
[08:14:08 -109652.243935] Model parameter optimization (eps = 3.000000)
[08:14:31 -108845.227792] FAST spr round 1 (radius: 25)
[08:15:35 -100952.660750] FAST spr round 2 (radius: 25)
[08:16:25 -100391.095309] FAST spr round 3 (radius: 25)
[08:17:09 -100335.681614] FAST spr round 4 (radius: 25)
[08:17:50 -100330.317659] FAST spr round 5 (radius: 25)
[08:18:30 -100330.316333] Model parameter optimization (eps = 1.000000)
[08:18:40 -100313.175180] SLOW spr round 1 (radius: 5)
[08:19:29 -100295.030714] SLOW spr round 2 (radius: 5)
[08:20:16 -100291.105359] SLOW spr round 3 (radius: 5)
[08:21:04 -100291.102378] SLOW spr round 4 (radius: 10)
[08:21:54 -100287.934161] SLOW spr round 5 (radius: 5)
[08:22:51 -100287.933811] SLOW spr round 6 (radius: 10)
[08:23:46 -100287.732873] SLOW spr round 7 (radius: 5)
[08:24:41 -100287.732707] SLOW spr round 8 (radius: 10)
[08:25:36 -100287.732684] SLOW spr round 9 (radius: 15)
[08:26:48 -100287.366625] SLOW spr round 10 (radius: 5)
[08:27:48 -100287.365563] SLOW spr round 11 (radius: 10)
[08:28:47 -100287.365365] SLOW spr round 12 (radius: 15)
[08:30:00 -100287.365328] SLOW spr round 13 (radius: 20)
[08:31:41 -100287.365321] SLOW spr round 14 (radius: 25)
[08:33:46 -100284.256333] SLOW spr round 15 (radius: 5)
[08:34:48 -100284.245006] SLOW spr round 16 (radius: 10)
[08:35:48 -100284.243566] SLOW spr round 17 (radius: 15)
[08:36:59 -100284.242950] SLOW spr round 18 (radius: 20)
[08:38:39 -100284.242742] SLOW spr round 19 (radius: 25)
[08:40:43 -100284.242681] Model parameter optimization (eps = 0.100000)

[08:40:47] ML tree search #16, logLikelihood: -100284.211569

[08:40:47 -322167.019093] Initial branch length optimization
[08:40:48 -235448.262257] Model parameter optimization (eps = 10.000000)
[08:41:14 -234280.188492] AUTODETECT spr round 1 (radius: 5)
[08:41:57 -175805.213999] AUTODETECT spr round 2 (radius: 10)
[08:42:45 -143238.486484] AUTODETECT spr round 3 (radius: 15)
[08:43:37 -125413.055599] AUTODETECT spr round 4 (radius: 20)
[08:44:36 -112161.959054] AUTODETECT spr round 5 (radius: 25)
[08:45:41 -110738.225281] SPR radius for FAST iterations: 25 (autodetect)
[08:45:41 -110738.225281] Model parameter optimization (eps = 3.000000)
[08:46:06 -109906.652105] FAST spr round 1 (radius: 25)
[08:47:12 -100691.273199] FAST spr round 2 (radius: 25)
[08:48:05 -100335.222996] FAST spr round 3 (radius: 25)
[08:48:49 -100321.145877] FAST spr round 4 (radius: 25)
[08:49:31 -100317.841112] FAST spr round 5 (radius: 25)
[08:50:10 -100315.457114] FAST spr round 6 (radius: 25)
[08:50:49 -100315.456679] Model parameter optimization (eps = 1.000000)
[08:50:58 -100310.814807] SLOW spr round 1 (radius: 5)
[08:51:48 -100291.568077] SLOW spr round 2 (radius: 5)
[08:52:37 -100290.063947] SLOW spr round 3 (radius: 5)
[08:53:25 -100290.062543] SLOW spr round 4 (radius: 10)
[08:54:18 -100284.038045] SLOW spr round 5 (radius: 5)
[08:55:15 -100284.034984] SLOW spr round 6 (radius: 10)
[08:56:11 -100283.828056] SLOW spr round 7 (radius: 5)
[08:57:07 -100283.827748] SLOW spr round 8 (radius: 10)
[08:58:03 -100283.827720] SLOW spr round 9 (radius: 15)
[08:59:13 -100278.202647] SLOW spr round 10 (radius: 5)
[09:00:14 -100278.195286] SLOW spr round 11 (radius: 10)
[09:01:13 -100278.194084] SLOW spr round 12 (radius: 15)
[09:02:22 -100278.193872] SLOW spr round 13 (radius: 20)
[09:03:59 -100278.085753] SLOW spr round 14 (radius: 5)
[09:05:01 -100277.888761] SLOW spr round 15 (radius: 5)
[09:05:57 -100277.888758] SLOW spr round 16 (radius: 10)
[09:06:51 -100277.888758] SLOW spr round 17 (radius: 15)
[09:08:00 -100277.888757] SLOW spr round 18 (radius: 20)
[09:09:36 -100277.888757] SLOW spr round 19 (radius: 25)
[09:11:32 -100277.888757] Model parameter optimization (eps = 0.100000)

[09:11:35] ML tree search #17, logLikelihood: -100277.831329

[09:11:35 -323191.868808] Initial branch length optimization
[09:11:37 -235191.819727] Model parameter optimization (eps = 10.000000)
[09:12:01 -234043.683668] AUTODETECT spr round 1 (radius: 5)
[09:12:44 -175554.611262] AUTODETECT spr round 2 (radius: 10)
[09:13:32 -137659.553196] AUTODETECT spr round 3 (radius: 15)
[09:14:21 -124634.455892] AUTODETECT spr round 4 (radius: 20)
[09:15:16 -117689.784895] AUTODETECT spr round 5 (radius: 25)
[09:16:21 -114440.908427] SPR radius for FAST iterations: 25 (autodetect)
[09:16:21 -114440.908427] Model parameter optimization (eps = 3.000000)
[09:16:42 -113662.235493] FAST spr round 1 (radius: 25)
[09:17:46 -103037.033922] FAST spr round 2 (radius: 25)
[09:18:40 -100577.193789] FAST spr round 3 (radius: 25)
[09:19:22 -100450.798309] FAST spr round 4 (radius: 25)
[09:20:04 -100427.598367] FAST spr round 5 (radius: 25)
[09:20:47 -100427.120580] FAST spr round 6 (radius: 25)
[09:21:23 -100427.120441] Model parameter optimization (eps = 1.000000)
[09:21:32 -100399.032585] SLOW spr round 1 (radius: 5)
[09:22:15 -100390.562040] SLOW spr round 2 (radius: 5)
[09:23:00 -100386.938178] SLOW spr round 3 (radius: 5)
[09:23:44 -100386.589783] SLOW spr round 4 (radius: 5)
[09:24:29 -100386.589564] SLOW spr round 5 (radius: 10)
[09:25:18 -100385.243513] SLOW spr round 6 (radius: 5)
[09:26:17 -100385.243475] SLOW spr round 7 (radius: 10)
[09:27:13 -100384.396824] SLOW spr round 8 (radius: 5)
[09:28:06 -100383.266418] SLOW spr round 9 (radius: 5)
[09:28:54 -100383.266376] SLOW spr round 10 (radius: 10)
[09:29:43 -100383.266372] SLOW spr round 11 (radius: 15)
[09:30:52 -100382.870438] SLOW spr round 12 (radius: 5)
[09:31:57 -100382.735647] SLOW spr round 13 (radius: 5)
[09:32:57 -100382.735356] SLOW spr round 14 (radius: 10)
[09:33:57 -100382.735314] SLOW spr round 15 (radius: 15)
[09:35:17 -100382.735309] SLOW spr round 16 (radius: 20)
[09:37:11 -100382.674769] SLOW spr round 17 (radius: 25)
[09:39:27 -100289.179931] SLOW spr round 18 (radius: 5)
[09:40:38 -100275.516251] SLOW spr round 19 (radius: 5)
[09:41:38 -100274.823146] SLOW spr round 20 (radius: 5)
[09:42:34 -100274.822701] SLOW spr round 21 (radius: 10)
[09:43:31 -100274.822667] SLOW spr round 22 (radius: 15)
[09:44:51 -100274.822651] SLOW spr round 23 (radius: 20)
[09:46:42 -100274.713708] SLOW spr round 24 (radius: 5)
[09:47:50 -100274.516653] SLOW spr round 25 (radius: 5)
[09:48:50 -100274.516650] SLOW spr round 26 (radius: 10)
[09:49:50 -100274.516650] SLOW spr round 27 (radius: 15)
[09:51:10 -100274.516650] SLOW spr round 28 (radius: 20)
[09:53:03 -100274.516650] SLOW spr round 29 (radius: 25)
[09:55:23 -100274.516650] Model parameter optimization (eps = 0.100000)

[09:55:29] ML tree search #18, logLikelihood: -100274.390251

[09:55:29 -323523.861189] Initial branch length optimization
[09:55:31 -235030.785588] Model parameter optimization (eps = 10.000000)
[09:56:01 -233911.767511] AUTODETECT spr round 1 (radius: 5)
[09:56:50 -178292.993002] AUTODETECT spr round 2 (radius: 10)
[09:57:43 -139682.645419] AUTODETECT spr round 3 (radius: 15)
[09:58:41 -128825.187799] AUTODETECT spr round 4 (radius: 20)
[09:59:48 -118418.316602] AUTODETECT spr round 5 (radius: 25)
[10:01:03 -113126.082871] SPR radius for FAST iterations: 25 (autodetect)
[10:01:03 -113126.082871] Model parameter optimization (eps = 3.000000)
[10:01:27 -112348.488630] FAST spr round 1 (radius: 25)
[10:02:38 -101485.617854] FAST spr round 2 (radius: 25)
[10:03:32 -101209.100701] FAST spr round 3 (radius: 25)
[10:04:21 -101187.489537] FAST spr round 4 (radius: 25)
[10:05:07 -100896.877291] FAST spr round 5 (radius: 25)
[10:05:51 -100896.876523] Model parameter optimization (eps = 1.000000)
[10:06:01 -100885.500468] SLOW spr round 1 (radius: 5)
[10:06:55 -100864.112329] SLOW spr round 2 (radius: 5)
[10:07:49 -100862.571489] SLOW spr round 3 (radius: 5)
[10:08:43 -100862.570261] SLOW spr round 4 (radius: 10)
[10:09:40 -100861.481194] SLOW spr round 5 (radius: 5)
[10:10:44 -100861.244659] SLOW spr round 6 (radius: 5)
[10:11:42 -100861.244247] SLOW spr round 7 (radius: 10)
[10:12:41 -100860.862876] SLOW spr round 8 (radius: 5)
[10:13:43 -100860.861833] SLOW spr round 9 (radius: 10)
[10:14:46 -100860.861617] SLOW spr round 10 (radius: 15)
[10:16:09 -100776.050644] SLOW spr round 11 (radius: 5)
[10:17:22 -100680.817994] SLOW spr round 12 (radius: 5)
[10:18:24 -100678.618247] SLOW spr round 13 (radius: 5)
[10:19:20 -100678.329234] SLOW spr round 14 (radius: 5)
[10:20:14 -100678.047394] SLOW spr round 15 (radius: 5)
[10:21:06 -100678.047075] SLOW spr round 16 (radius: 10)
[10:22:04 -100672.506162] SLOW spr round 17 (radius: 5)
[10:23:08 -100669.344688] SLOW spr round 18 (radius: 5)
[10:24:04 -100669.344671] SLOW spr round 19 (radius: 10)
[10:25:03 -100669.344665] SLOW spr round 20 (radius: 15)
[10:26:25 -100668.195371] SLOW spr round 21 (radius: 5)
[10:27:31 -100668.192856] SLOW spr round 22 (radius: 10)
[10:28:37 -100668.192284] SLOW spr round 23 (radius: 15)
[10:29:57 -100668.192141] SLOW spr round 24 (radius: 20)
[10:31:55 -100668.192104] SLOW spr round 25 (radius: 25)
[10:34:22 -100667.355935] SLOW spr round 26 (radius: 5)
[10:35:32 -100318.769919] SLOW spr round 27 (radius: 5)
[10:36:35 -100286.370664] SLOW spr round 28 (radius: 5)
[10:37:30 -100286.360085] SLOW spr round 29 (radius: 10)
[10:38:26 -100286.360053] SLOW spr round 30 (radius: 15)
[10:39:46 -100286.360051] SLOW spr round 31 (radius: 20)
[10:41:47 -100286.360048] SLOW spr round 32 (radius: 25)
[10:44:22 -100284.624721] SLOW spr round 33 (radius: 5)
[10:45:37 -100283.270133] SLOW spr round 34 (radius: 5)
[10:46:43 -100282.943791] SLOW spr round 35 (radius: 5)
[10:47:43 -100282.943682] SLOW spr round 36 (radius: 10)
[10:48:47 -100281.263593] SLOW spr round 37 (radius: 5)
[10:49:55 -100278.552110] SLOW spr round 38 (radius: 5)
[10:50:56 -100278.475283] SLOW spr round 39 (radius: 10)
[10:51:59 -100278.475255] SLOW spr round 40 (radius: 15)
[10:53:26 -100278.475251] SLOW spr round 41 (radius: 20)
[10:55:27 -100278.475248] SLOW spr round 42 (radius: 25)
[10:57:59 -100278.475246] Model parameter optimization (eps = 0.100000)

[10:58:05] ML tree search #19, logLikelihood: -100278.003808

[10:58:05 -323003.417529] Initial branch length optimization
[10:58:07 -235876.877942] Model parameter optimization (eps = 10.000000)
[10:58:38 -234710.947387] AUTODETECT spr round 1 (radius: 5)
[10:59:31 -176954.910724] AUTODETECT spr round 2 (radius: 10)
[11:00:31 -141643.170706] AUTODETECT spr round 3 (radius: 15)
[11:01:36 -125559.977113] AUTODETECT spr round 4 (radius: 20)
[11:02:47 -119822.988929] AUTODETECT spr round 5 (radius: 25)
[11:04:16 -113224.822444] SPR radius for FAST iterations: 25 (autodetect)
[11:04:16 -113224.822444] Model parameter optimization (eps = 3.000000)
[11:04:44 -112436.341680] FAST spr round 1 (radius: 25)
[11:05:55 -102031.517691] FAST spr round 2 (radius: 25)
[11:06:56 -101265.827568] FAST spr round 3 (radius: 25)
[11:07:50 -100783.343112] FAST spr round 4 (radius: 25)
[11:08:43 -100750.013854] FAST spr round 5 (radius: 25)
[11:09:32 -100746.685939] FAST spr round 6 (radius: 25)
[11:10:20 -100746.685844] Model parameter optimization (eps = 1.000000)
[11:10:32 -100733.226004] SLOW spr round 1 (radius: 5)
[11:11:31 -100720.393206] SLOW spr round 2 (radius: 5)
[11:12:27 -100720.314699] SLOW spr round 3 (radius: 10)
[11:13:29 -100715.676527] SLOW spr round 4 (radius: 5)
[11:14:37 -100715.675842] SLOW spr round 5 (radius: 10)
[11:15:44 -100715.675535] SLOW spr round 6 (radius: 15)
[11:17:07 -100713.186181] SLOW spr round 7 (radius: 5)
[11:18:20 -100713.076140] SLOW spr round 8 (radius: 5)
[11:19:24 -100713.075481] SLOW spr round 9 (radius: 10)
[11:20:29 -100713.075387] SLOW spr round 10 (radius: 15)
[11:21:52 -100713.075374] SLOW spr round 11 (radius: 20)
[11:23:50 -100713.075370] SLOW spr round 12 (radius: 25)
[11:26:19 -100704.813777] SLOW spr round 13 (radius: 5)
[11:27:35 -100704.150019] SLOW spr round 14 (radius: 5)
[11:28:40 -100704.149682] SLOW spr round 15 (radius: 10)
[11:29:48 -100671.183210] SLOW spr round 16 (radius: 5)
[11:30:57 -100522.202681] SLOW spr round 17 (radius: 5)
[11:31:59 -100522.199604] SLOW spr round 18 (radius: 10)
[11:33:03 -100520.741359] SLOW spr round 19 (radius: 5)
[11:34:12 -100514.743706] SLOW spr round 20 (radius: 5)
[11:35:14 -100514.412583] SLOW spr round 21 (radius: 5)
[11:36:12 -100514.412154] SLOW spr round 22 (radius: 10)
[11:37:13 -100514.412102] SLOW spr round 23 (radius: 15)
[11:38:39 -100514.412032] SLOW spr round 24 (radius: 20)
[11:40:37 -100514.221199] SLOW spr round 25 (radius: 5)
[11:41:51 -100514.221079] SLOW spr round 26 (radius: 10)
[11:43:03 -100514.221071] SLOW spr round 27 (radius: 15)
[11:44:25 -100514.221069] SLOW spr round 28 (radius: 20)
[11:46:17 -100514.221069] SLOW spr round 29 (radius: 25)
[11:48:35 -100514.221069] Model parameter optimization (eps = 0.100000)

[11:48:43] ML tree search #20, logLikelihood: -100513.548056


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.164098,0.773628) (0.098782,0.784729) (0.514348,0.787016) (0.222772,1.753957) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -100265.846924

AIC score: 203409.693847 / AICc score: 4347729.693847 / BIC score: 209403.730139
Free parameters (model + branch lengths): 1439

WARNING: Number of free parameters (K=1439) is larger than alignment size (n=476).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y3Q4/3_mltree/Q9Y3Q4.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y3Q4/3_mltree/Q9Y3Q4.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y3Q4/3_mltree/Q9Y3Q4.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9Y3Q4/3_mltree/Q9Y3Q4.raxml.log

Analysis started: 04-Jul-2021 01:33:58 / finished: 04-Jul-2021 13:22:42

Elapsed time: 42523.255 seconds

Consumed energy: 3982.952 Wh (= 20 km in an electric car, or 100 km with an e-scooter!)