RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 20-Jul-2021 07:03:55 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UPU7/2_msa/Q9UPU7_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UPU7/3_mltree/Q9UPU7 --seed 2 --threads 4 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UPU7/2_msa/Q9UPU7_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 217 sites

WARNING: Sequences tr_B4QZ41_B4QZ41_DROSI_7240 and tr_Q9VFB6_Q9VFB6_DROME_7227 are exactly identical!
WARNING: Sequences tr_B4QZ41_B4QZ41_DROSI_7240 and tr_B4HE08_B4HE08_DROSE_7238 are exactly identical!
WARNING: Sequences tr_E1BR02_E1BR02_CHICK_9031 and tr_G1NI77_G1NI77_MELGA_9103 are exactly identical!
WARNING: Sequences tr_E1BR02_E1BR02_CHICK_9031 and tr_A0A0Q3URY7_A0A0Q3URY7_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_E1BR02_E1BR02_CHICK_9031 and tr_A0A226MGN9_A0A226MGN9_CALSU_9009 are exactly identical!
WARNING: Sequences tr_E1BR02_E1BR02_CHICK_9031 and tr_A0A226NVX9_A0A226NVX9_COLVI_9014 are exactly identical!
WARNING: Sequences tr_F1NUZ2_F1NUZ2_CHICK_9031 and tr_G1MXU0_G1MXU0_MELGA_9103 are exactly identical!
WARNING: Sequences tr_F1NUZ2_F1NUZ2_CHICK_9031 and tr_A0A226NDQ4_A0A226NDQ4_CALSU_9009 are exactly identical!
WARNING: Sequences tr_F1NUZ2_F1NUZ2_CHICK_9031 and tr_A0A226PRL4_A0A226PRL4_COLVI_9014 are exactly identical!
WARNING: Sequences tr_M3YYC5_M3YYC5_MUSPF_9669 and tr_A0A2Y9KLS6_A0A2Y9KLS6_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_G3HW07_G3HW07_CRIGR_10029 and sp_Q6P6R7_SGSM3_RAT_10116 are exactly identical!
WARNING: Sequences tr_G3HW07_G3HW07_CRIGR_10029 and tr_A0A1U8BHV8_A0A1U8BHV8_MESAU_10036 are exactly identical!
WARNING: Sequences tr_B2VQL7_B2VQL7_PYRTR_426418 and tr_A0A2W1DKE1_A0A2W1DKE1_9PLEO_45151 are exactly identical!
WARNING: Sequences tr_D8QTN7_D8QTN7_SELML_88036 and tr_D8T3V1_D8T3V1_SELML_88036 are exactly identical!
WARNING: Sequences tr_A0A2I2Z628_A0A2I2Z628_GORGO_9595 and tr_H2Q9V7_H2Q9V7_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2Z628_A0A2I2Z628_GORGO_9595 and sp_Q9UPU7_TBD2B_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I2Z628_A0A2I2Z628_GORGO_9595 and tr_A0A1D5QUC9_A0A1D5QUC9_MACMU_9544 are exactly identical!
WARNING: Sequences tr_A0A2I2Z628_A0A2I2Z628_GORGO_9595 and tr_A0A096NMV0_A0A096NMV0_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A2I2Z628_A0A2I2Z628_GORGO_9595 and tr_A0A0D9RQH3_A0A0D9RQH3_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A2I2Z628_A0A2I2Z628_GORGO_9595 and tr_A0A2K5ML26_A0A2K5ML26_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2I2Z628_A0A2I2Z628_GORGO_9595 and tr_A0A2K5Z049_A0A2K5Z049_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2I2Z628_A0A2I2Z628_GORGO_9595 and tr_A0A2R9BT82_A0A2R9BT82_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3RGQ0_G3RGQ0_GORGO_9595 and tr_H2P4H1_H2P4H1_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G3RGQ0_G3RGQ0_GORGO_9595 and tr_H2QLR4_H2QLR4_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3RGQ0_G3RGQ0_GORGO_9595 and sp_Q96HU1_SGSM3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3RGQ0_G3RGQ0_GORGO_9595 and tr_A0A2R9AIN7_A0A2R9AIN7_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3RSC2_G3RSC2_GORGO_9595 and tr_H2QXK1_H2QXK1_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3RSC2_G3RSC2_GORGO_9595 and sp_Q9BYX2_TBD2A_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3RSC2_G3RSC2_GORGO_9595 and tr_A0A2R9BYX8_A0A2R9BYX8_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G2XBQ0_G2XBQ0_VERDV_498257 and tr_A0A0G4KTJ0_A0A0G4KTJ0_9PEZI_100787 are exactly identical!
WARNING: Sequences tr_G2XBQ0_G2XBQ0_VERDV_498257 and tr_A0A0G4LBF1_A0A0G4LBF1_9PEZI_100787 are exactly identical!
WARNING: Sequences tr_Q1K4P9_Q1K4P9_NEUCR_367110 and tr_G4UUR8_G4UUR8_NEUT9_510952 are exactly identical!
WARNING: Sequences tr_A0A0R3NJJ4_A0A0R3NJJ4_DROPS_46245 and tr_B4GMM2_B4GMM2_DROPE_7234 are exactly identical!
WARNING: Sequences tr_F9FA50_F9FA50_FUSOF_660025 and tr_A0A0D2Y456_A0A0D2Y456_FUSO4_426428 are exactly identical!
WARNING: Sequences tr_F9FA50_F9FA50_FUSOF_660025 and tr_S0DHX2_S0DHX2_GIBF5_1279085 are exactly identical!
WARNING: Sequences tr_F9FA50_F9FA50_FUSOF_660025 and tr_N4UV54_N4UV54_FUSC1_1229664 are exactly identical!
WARNING: Sequences tr_F9FA50_F9FA50_FUSOF_660025 and tr_X0DGC7_X0DGC7_FUSOX_1089458 are exactly identical!
WARNING: Sequences tr_F9FA50_F9FA50_FUSOF_660025 and tr_A0A2H3I4J6_A0A2H3I4J6_FUSOX_327505 are exactly identical!
WARNING: Sequences tr_F9FA50_F9FA50_FUSOF_660025 and tr_A0A2K0W668_A0A2K0W668_GIBNY_42673 are exactly identical!
WARNING: Sequences tr_F9FA50_F9FA50_FUSOF_660025 and tr_A0A365MRV2_A0A365MRV2_GIBIN_948311 are exactly identical!
WARNING: Sequences tr_E9E7E7_E9E7E7_METAQ_655827 and tr_A0A0B4H9I6_A0A0B4H9I6_METMF_1276143 are exactly identical!
WARNING: Sequences tr_J4KQ29_J4KQ29_BEAB2_655819 and tr_A0A0A2VVF6_A0A0A2VVF6_BEABA_1245745 are exactly identical!
WARNING: Sequences tr_J4KQ29_J4KQ29_BEAB2_655819 and tr_A0A2N6NMR7_A0A2N6NMR7_BEABA_176275 are exactly identical!
WARNING: Sequences tr_K4DBD1_K4DBD1_SOLLC_4081 and tr_M1B393_M1B393_SOLTU_4113 are exactly identical!
WARNING: Sequences tr_A0A158NNI4_A0A158NNI4_ATTCE_12957 and tr_F4WQG0_F4WQG0_ACREC_103372 are exactly identical!
WARNING: Sequences tr_A0A158NNI4_A0A158NNI4_ATTCE_12957 and tr_A0A195B3I6_A0A195B3I6_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A287DEC9_A0A287DEC9_ICTTR_43179 and tr_A0A2U4CKU7_A0A2U4CKU7_TURTR_9739 are exactly identical!
WARNING: Sequences tr_A0A287DEC9_A0A287DEC9_ICTTR_43179 and tr_A0A2Y9NSG4_A0A2Y9NSG4_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A287DEC9_A0A287DEC9_ICTTR_43179 and tr_A0A2Y9EIK2_A0A2Y9EIK2_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A287DEC9_A0A287DEC9_ICTTR_43179 and tr_A0A384BGZ2_A0A384BGZ2_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A0A0E0IAH2_A0A0E0IAH2_ORYNI_4536 and tr_I1QHU9_I1QHU9_ORYGL_4538 are exactly identical!
WARNING: Sequences tr_A0A0E0IAH2_A0A0E0IAH2_ORYNI_4536 and tr_A0A0E0QHL4_A0A0E0QHL4_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A0A0E0IAH2_A0A0E0IAH2_ORYNI_4536 and tr_Q6Z973_Q6Z973_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_F7H0Q1_F7H0Q1_MACMU_9544 and tr_A0A096P126_A0A096P126_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F7H0Q1_F7H0Q1_MACMU_9544 and tr_A0A0D9RF58_A0A0D9RF58_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F7H0Q1_F7H0Q1_MACMU_9544 and tr_A0A2K5L0W7_A0A2K5L0W7_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F7H0Q1_F7H0Q1_MACMU_9544 and tr_A0A2K6BSU7_A0A2K6BSU7_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7H0Q1_F7H0Q1_MACMU_9544 and tr_A0A2K6A0R7_A0A2K6A0R7_MANLE_9568 are exactly identical!
WARNING: Sequences tr_H0ZIK8_H0ZIK8_TAEGU_59729 and tr_A0A218V0W1_A0A218V0W1_9PASE_299123 are exactly identical!
WARNING: Sequences tr_G0NAR6_G0NAR6_CAEBE_135651 and tr_G0PIN7_G0PIN7_CAEBE_135651 are exactly identical!
WARNING: Sequences tr_G2Y318_G2Y318_BOTF4_999810 and tr_M7UJX9_M7UJX9_BOTF1_1290391 are exactly identical!
WARNING: Sequences tr_E3M4W7_E3M4W7_CAERE_31234 and tr_A0A261CF77_A0A261CF77_9PELO_1503980 are exactly identical!
WARNING: Sequences tr_E3ME86_E3ME86_CAERE_31234 and tr_A0A261CM88_A0A261CM88_9PELO_1503980 are exactly identical!
WARNING: Sequences tr_A5K4F7_A5K4F7_PLAVS_126793 and tr_A0A384KMU7_A0A384KMU7_PLAKH_5851 are exactly identical!
WARNING: Sequences tr_E3L3J6_E3L3J6_PUCGT_418459 and tr_H6QQJ6_H6QQJ6_PUCGT_418459 are exactly identical!
WARNING: Sequences tr_B3RKI7_B3RKI7_TRIAD_10228 and tr_A0A369SCQ8_A0A369SCQ8_9METZ_287889 are exactly identical!
WARNING: Sequences tr_B3RPU2_B3RPU2_TRIAD_10228 and tr_A0A369S570_A0A369S570_9METZ_287889 are exactly identical!
WARNING: Sequences tr_G7PFL7_G7PFL7_MACFA_9541 and tr_A0A2I3NHU9_A0A2I3NHU9_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G7PFL7_G7PFL7_MACFA_9541 and tr_A0A0D9R0Z0_A0A0D9R0Z0_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G7PFL7_G7PFL7_MACFA_9541 and tr_A0A2K5MSR3_A0A2K5MSR3_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G7PFL7_G7PFL7_MACFA_9541 and tr_A0A2K6BTE8_A0A2K6BTE8_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G7PFL7_G7PFL7_MACFA_9541 and tr_A0A2K5ZRR3_A0A2K5ZRR3_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A287EH43_A0A287EH43_HORVV_112509 and tr_A0A3B5XT97_A0A3B5XT97_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_M4ELL7_M4ELL7_BRARP_51351 and tr_A0A078HDV1_A0A078HDV1_BRANA_3708 are exactly identical!
WARNING: Sequences tr_M4FG13_M4FG13_BRARP_51351 and tr_A0A078G9S3_A0A078G9S3_BRANA_3708 are exactly identical!
WARNING: Sequences tr_R7UAQ6_R7UAQ6_CAPTE_283909 and tr_R7VBD9_R7VBD9_CAPTE_283909 are exactly identical!
WARNING: Sequences tr_T1JW53_T1JW53_TETUR_32264 and tr_T1L606_T1L606_TETUR_32264 are exactly identical!
WARNING: Sequences tr_U3KCD1_U3KCD1_FICAL_59894 and tr_A0A091EXI3_A0A091EXI3_CORBR_85066 are exactly identical!
WARNING: Sequences tr_U3I4N1_U3I4N1_ANAPL_8839 and tr_A0A0Q3PPW4_A0A0Q3PPW4_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_U3I4N1_U3I4N1_ANAPL_8839 and tr_A0A2I0M6J9_A0A2I0M6J9_COLLI_8932 are exactly identical!
WARNING: Sequences tr_U3I4N1_U3I4N1_ANAPL_8839 and tr_A0A1V4JDC6_A0A1V4JDC6_PATFA_372326 are exactly identical!
WARNING: Sequences tr_U3J4R3_U3J4R3_ANAPL_8839 and tr_A0A087QLT1_A0A087QLT1_APTFO_9233 are exactly identical!
WARNING: Sequences tr_U3J4R3_U3J4R3_ANAPL_8839 and tr_A0A093H247_A0A093H247_STRCA_441894 are exactly identical!
WARNING: Sequences tr_U3J4R3_U3J4R3_ANAPL_8839 and tr_A0A091W7E4_A0A091W7E4_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_U3J4R3_U3J4R3_ANAPL_8839 and tr_A0A099ZHP1_A0A099ZHP1_TINGU_94827 are exactly identical!
WARNING: Sequences tr_M2R378_M2R378_COCSN_665912 and tr_W6Y2Q9_W6Y2Q9_COCCA_930089 are exactly identical!
WARNING: Sequences tr_M2R378_M2R378_COCSN_665912 and tr_W6ZC68_W6ZC68_COCMI_930090 are exactly identical!
WARNING: Sequences tr_U5H7P3_U5H7P3_USTV1_683840 and tr_A0A2X0PJU8_A0A2X0PJU8_9BASI_796604 are exactly identical!
WARNING: Sequences tr_V2Y320_V2Y320_MONRO_1381753 and tr_A0A0W0GAX2_A0A0W0GAX2_9AGAR_221103 are exactly identical!
WARNING: Sequences tr_A0A010R484_A0A010R484_9PEZI_1445577 and tr_A0A135UXA0_A0A135UXA0_9PEZI_1209931 are exactly identical!
WARNING: Sequences tr_A0A010R484_A0A010R484_9PEZI_1445577 and tr_A0A1G4BLJ9_A0A1G4BLJ9_9PEZI_1209926 are exactly identical!
WARNING: Sequences tr_A0A015IPM8_A0A015IPM8_9GLOM_1432141 and tr_A0A2I1G535_A0A2I1G535_9GLOM_588596 are exactly identical!
WARNING: Sequences tr_A0A067ETQ2_A0A067ETQ2_CITSI_2711 and tr_V4U9W8_V4U9W8_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_A0A067ETQ2_A0A067ETQ2_CITSI_2711 and tr_A0A2H5PLE6_A0A2H5PLE6_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A078GRI3_A0A078GRI3_BRANA_3708 and tr_A0A0D3CLX6_A0A0D3CLX6_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_A0A0D2NBL2_A0A0D2NBL2_GOSRA_29730 and tr_A0A1U8P6A3_A0A1U8P6A3_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0D2PV65_A0A0D2PV65_GOSRA_29730 and tr_A0A1U8P740_A0A1U8P740_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0F9XQ74_A0A0F9XQ74_TRIHA_5544 and tr_A0A2T3ZXX1_A0A2T3ZXX1_TRIHA_983964 are exactly identical!
WARNING: Sequences tr_A0A0K0FLB6_A0A0K0FLB6_STRVS_75913 and tr_A0A0N5CD36_A0A0N5CD36_STREA_174720 are exactly identical!
WARNING: Sequences tr_A0A0A1NJI9_A0A0A1NJI9_9FUNG_58291 and tr_A0A367J5C3_A0A367J5C3_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A0A1NJI9_A0A0A1NJI9_9FUNG_58291 and tr_A0A367JPB1_A0A367JPB1_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A151M9Y7_A0A151M9Y7_ALLMI_8496 and tr_A0A3Q0GWL7_A0A3Q0GWL7_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A091VG50_A0A091VG50_NIPNI_128390 and tr_A0A087QRW9_A0A087QRW9_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A091VG50_A0A091VG50_NIPNI_128390 and tr_A0A099ZKE1_A0A099ZKE1_TINGU_94827 are exactly identical!
WARNING: Sequences tr_A0A091VG50_A0A091VG50_NIPNI_128390 and tr_A0A091GJ23_A0A091GJ23_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A091VG50_A0A091VG50_NIPNI_128390 and tr_A0A0A0ANQ1_A0A0A0ANQ1_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A091VG50_A0A091VG50_NIPNI_128390 and tr_A0A091ILS7_A0A091ILS7_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A0A0A287_A0A0A0A287_CHAVO_50402 and tr_A0A1V4JA73_A0A1V4JA73_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A0V0RP14_A0A0V0RP14_9BILA_6336 and tr_A0A0V1CNF9_A0A0V1CNF9_TRIBR_45882 are exactly identical!
WARNING: Sequences tr_A0A0V1D5W5_A0A0V1D5W5_TRIBR_45882 and tr_A0A0V1P8X5_A0A0V1P8X5_9BILA_92180 are exactly identical!
WARNING: Sequences tr_A0A0V0WN21_A0A0V0WN21_9BILA_92179 and tr_A0A0V0VVW6_A0A0V0VVW6_9BILA_181606 are exactly identical!
WARNING: Sequences tr_A0A0V0WN21_A0A0V0WN21_9BILA_92179 and tr_A0A0V1LKW1_A0A0V1LKW1_9BILA_6335 are exactly identical!
WARNING: Sequences tr_A0A0V0WN21_A0A0V0WN21_9BILA_92179 and tr_A0A0V0U6R0_A0A0V0U6R0_9BILA_144512 are exactly identical!
WARNING: Sequences tr_A0A0V0X7W0_A0A0V0X7W0_9BILA_92179 and tr_A0A0V0U145_A0A0V0U145_9BILA_144512 are exactly identical!
WARNING: Sequences tr_A0A0V1KZ18_A0A0V1KZ18_9BILA_6335 and tr_A0A0V1P032_A0A0V1P032_9BILA_92180 are exactly identical!
WARNING: Sequences tr_A0A0N7L9A3_A0A0N7L9A3_9BASI_401625 and tr_A0A316VYN2_A0A316VYN2_9BASI_1522189 are exactly identical!
WARNING: Sequences tr_A0A151WWS4_A0A151WWS4_9HYME_64791 and tr_A0A195DKL1_A0A195DKL1_9HYME_471704 are exactly identical!
WARNING: Sequences tr_A0A164NVH0_A0A164NVH0_9HOMO_1314777 and tr_A0A166FC28_A0A166FC28_9HOMO_1314776 are exactly identical!
WARNING: Sequences tr_A0A164VQY6_A0A164VQY6_9HOMO_1314777 and tr_A0A166A2A1_A0A166A2A1_9HOMO_1314776 are exactly identical!
WARNING: Sequences tr_A0A1S3XR29_A0A1S3XR29_TOBAC_4097 and tr_A0A1U7X479_A0A1U7X479_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S4CBB7_A0A1S4CBB7_TOBAC_4097 and tr_A0A1J6HW12_A0A1J6HW12_NICAT_49451 are exactly identical!
WARNING: Sequences tr_A0A1S4CBB7_A0A1S4CBB7_TOBAC_4097 and tr_A0A1U7XYH4_A0A1U7XYH4_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S3HAZ9_A0A1S3HAZ9_LINUN_7574 and tr_A0A1S3HB27_A0A1S3HB27_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3HAZ9_A0A1S3HAZ9_LINUN_7574 and tr_A0A1S3HCH7_A0A1S3HCH7_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3HAZ9_A0A1S3HAZ9_LINUN_7574 and tr_A0A1S3HDP6_A0A1S3HDP6_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3JQJ1_A0A1S3JQJ1_LINUN_7574 and tr_A0A2R2MKH5_A0A2R2MKH5_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3QIT1_A0A1S3QIT1_SALSA_8030 and tr_A0A1S3S364_A0A1S3S364_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3RRJ0_A0A1S3RRJ0_SALSA_8030 and tr_A0A060W2J4_A0A060W2J4_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A2D0SFT9_A0A2D0SFT9_ICTPU_7998 and tr_A0A2D0SGI1_A0A2D0SGI1_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0SFT9_A0A2D0SFT9_ICTPU_7998 and tr_A0A2D0SH36_A0A2D0SH36_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0SMB7_A0A2D0SMB7_ICTPU_7998 and tr_A0A2D0SMF2_A0A2D0SMF2_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0SMB7_A0A2D0SMB7_ICTPU_7998 and tr_W5UJP1_W5UJP1_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A1U8EC37_A0A1U8EC37_CAPAN_4072 and tr_A0A2G3BMT7_A0A2G3BMT7_CAPCH_80379 are exactly identical!
WARNING: Sequences tr_A0A1U8HAX9_A0A1U8HAX9_CAPAN_4072 and tr_A0A2G3C0B6_A0A2G3C0B6_CAPCH_80379 are exactly identical!
WARNING: Sequences tr_A0A2N5SJE3_A0A2N5SJE3_9BASI_200324 and tr_A0A2N5V366_A0A2N5V366_9BASI_200324 are exactly identical!
WARNING: Sequences tr_A0A2S7Q4L9_A0A2S7Q4L9_9HELO_2070414 and tr_A0A2S7R302_A0A2S7R302_9HELO_2070412 are exactly identical!
WARNING: Sequences tr_A0A2U3VQM1_A0A2U3VQM1_ODORO_9708 and tr_A0A2U3XER4_A0A2U3XER4_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_A0A2Y9F9H7_A0A2Y9F9H7_PHYCD_9755 and tr_A0A384AP71_A0A384AP71_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 138

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UPU7/3_mltree/Q9UPU7.raxml.reduced.phy

Alignment comprises 1 partitions and 217 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 217 / 217
Gaps: 1.16 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UPU7/3_mltree/Q9UPU7.raxml.rba

Parallelization scheme autoconfig: 4 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 217 / 17360
[00:00:00] Data distribution: max. searches per worker: 5

Starting ML tree search with 20 distinct starting trees

[00:00:00 -391394.710317] Initial branch length optimization
[00:00:06 -332444.649696] Model parameter optimization (eps = 10.000000)
[00:00:49 -331851.524017] AUTODETECT spr round 1 (radius: 5)
[00:04:04 -193504.595019] AUTODETECT spr round 2 (radius: 10)
[00:07:21 -141876.434347] AUTODETECT spr round 3 (radius: 15)
[00:10:51 -113493.389832] AUTODETECT spr round 4 (radius: 20)
[00:14:40 -103888.686115] AUTODETECT spr round 5 (radius: 25)
[00:19:25 -99698.714085] SPR radius for FAST iterations: 25 (autodetect)
[00:19:25 -99698.714085] Model parameter optimization (eps = 3.000000)
[00:19:47 -99569.217137] FAST spr round 1 (radius: 25)
[00:23:11 -82434.796819] FAST spr round 2 (radius: 25)
[00:25:46 -81826.533658] FAST spr round 3 (radius: 25)
[00:28:04 -81774.865212] FAST spr round 4 (radius: 25)
[00:30:06 -81772.048913] FAST spr round 5 (radius: 25)
[00:32:03 -81772.048912] Model parameter optimization (eps = 1.000000)
[00:32:20 -81755.423087] SLOW spr round 1 (radius: 5)
[00:35:03 -81740.135391] SLOW spr round 2 (radius: 5)
[00:37:46 -81738.955975] SLOW spr round 3 (radius: 5)
[00:40:28 -81738.955831] SLOW spr round 4 (radius: 10)
[00:43:04 -81738.955783] SLOW spr round 5 (radius: 15)
[00:47:21 -81738.628510] SLOW spr round 6 (radius: 5)
[00:50:51 -81738.628053] SLOW spr round 7 (radius: 10)
[00:53:50 -81738.628045] SLOW spr round 8 (radius: 15)
[00:57:47 -81738.628045] SLOW spr round 9 (radius: 20)
[01:02:38] [worker #2] ML tree search #3, logLikelihood: -81740.379567
[01:04:05 -81738.628044] SLOW spr round 10 (radius: 25)
[01:11:14] [worker #1] ML tree search #2, logLikelihood: -81746.141780
[01:12:21 -81738.628044] Model parameter optimization (eps = 0.100000)

[01:12:27] [worker #0] ML tree search #1, logLikelihood: -81738.607907

[01:12:27 -388388.250541] Initial branch length optimization
[01:12:34 -326981.661673] Model parameter optimization (eps = 10.000000)
[01:13:26 -326344.270839] AUTODETECT spr round 1 (radius: 5)
[01:16:45 -195906.615064] AUTODETECT spr round 2 (radius: 10)
[01:20:11 -138703.079207] AUTODETECT spr round 3 (radius: 15)
[01:23:43 -114161.991075] AUTODETECT spr round 4 (radius: 20)
[01:28:19 -97228.969476] AUTODETECT spr round 5 (radius: 25)
[01:33:26 -95774.039114] SPR radius for FAST iterations: 25 (autodetect)
[01:33:26 -95774.039114] Model parameter optimization (eps = 3.000000)
[01:33:50 -95650.757517] FAST spr round 1 (radius: 25)
[01:37:06 -82561.019066] FAST spr round 2 (radius: 25)
[01:39:34 -81836.347595] FAST spr round 3 (radius: 25)
[01:41:50 -81801.208401] FAST spr round 4 (radius: 25)
[01:43:55 -81794.891752] FAST spr round 5 (radius: 25)
[01:45:54 -81794.891541] Model parameter optimization (eps = 1.000000)
[01:46:10 -81785.658249] SLOW spr round 1 (radius: 5)
[01:49:01 -81749.789285] SLOW spr round 2 (radius: 5)
[01:51:44 -81747.468570] SLOW spr round 3 (radius: 5)
[01:54:26 -81743.775792] SLOW spr round 4 (radius: 5)
[01:57:03 -81743.775771] SLOW spr round 5 (radius: 10)
[01:57:37] [worker #3] ML tree search #4, logLikelihood: -81735.489750
[01:59:40 -81739.627837] SLOW spr round 6 (radius: 5)
[02:03:03 -81739.627792] SLOW spr round 7 (radius: 10)
[02:05:56 -81739.627791] SLOW spr round 8 (radius: 15)
[02:10:01 -81739.175952] SLOW spr round 9 (radius: 5)
[02:13:35 -81738.880308] SLOW spr round 10 (radius: 5)
[02:14:11] [worker #2] ML tree search #7, logLikelihood: -81755.140335
[02:16:37 -81738.878292] SLOW spr round 11 (radius: 10)
[02:19:21 -81738.877414] SLOW spr round 12 (radius: 15)
[02:23:26 -81738.877016] SLOW spr round 13 (radius: 20)
[02:29:36 -81738.876837] SLOW spr round 14 (radius: 25)
[02:31:48] [worker #1] ML tree search #6, logLikelihood: -81750.805917
[02:37:41 -81738.876755] Model parameter optimization (eps = 0.100000)

[02:37:53] [worker #0] ML tree search #5, logLikelihood: -81737.887777

[02:37:53 -393163.917230] Initial branch length optimization
[02:38:04 -333029.348768] Model parameter optimization (eps = 10.000000)
[02:38:49 -332239.324650] AUTODETECT spr round 1 (radius: 5)
[02:42:08 -197609.015480] AUTODETECT spr round 2 (radius: 10)
[02:45:35 -144401.243720] AUTODETECT spr round 3 (radius: 15)
[02:49:04 -124939.348877] AUTODETECT spr round 4 (radius: 20)
[02:53:09 -108736.571334] AUTODETECT spr round 5 (radius: 25)
[02:58:15 -100408.625289] SPR radius for FAST iterations: 25 (autodetect)
[02:58:15 -100408.625289] Model parameter optimization (eps = 3.000000)
[02:58:42 -100271.358268] FAST spr round 1 (radius: 25)
[03:01:59 -82891.677529] FAST spr round 2 (radius: 25)
[03:04:28 -81829.289082] FAST spr round 3 (radius: 25)
[03:06:46 -81761.698706] FAST spr round 4 (radius: 25)
[03:08:48 -81760.848295] FAST spr round 5 (radius: 25)
[03:10:48 -81760.847694] Model parameter optimization (eps = 1.000000)
[03:11:07 -81755.755030] SLOW spr round 1 (radius: 5)
[03:13:56 -81744.194935] SLOW spr round 2 (radius: 5)
[03:16:41 -81744.194018] SLOW spr round 3 (radius: 10)
[03:19:19 -81743.907299] SLOW spr round 4 (radius: 5)
[03:20:49] [worker #2] ML tree search #11, logLikelihood: -81741.937981
[03:22:47 -81743.906890] SLOW spr round 5 (radius: 10)
[03:25:40 -81743.906578] SLOW spr round 6 (radius: 15)
[03:29:34 -81741.645850] SLOW spr round 7 (radius: 5)
[03:33:06 -81741.645742] SLOW spr round 8 (radius: 10)
[03:36:05 -81741.645741] SLOW spr round 9 (radius: 15)
[03:39:56 -81741.645740] SLOW spr round 10 (radius: 20)
[03:45:41 -81741.462660] SLOW spr round 11 (radius: 5)
[03:48:52] [worker #1] ML tree search #10, logLikelihood: -81745.627432
[03:49:16 -81741.462433] SLOW spr round 12 (radius: 10)
[03:50:19] [worker #3] ML tree search #8, logLikelihood: -81742.921346
[03:52:21 -81741.462423] SLOW spr round 13 (radius: 15)
[03:56:11 -81741.462422] SLOW spr round 14 (radius: 20)
[04:01:57 -81741.462421] SLOW spr round 15 (radius: 25)
[04:09:11 -81741.462421] Model parameter optimization (eps = 0.100000)

[04:09:18] [worker #0] ML tree search #9, logLikelihood: -81741.424590

[04:09:18 -389740.174492] Initial branch length optimization
[04:09:25 -329496.049554] Model parameter optimization (eps = 10.000000)
[04:10:31 -328805.596852] AUTODETECT spr round 1 (radius: 5)
[04:13:54 -198098.741675] AUTODETECT spr round 2 (radius: 10)
[04:17:20 -146425.476302] AUTODETECT spr round 3 (radius: 15)
[04:20:50 -115770.208915] AUTODETECT spr round 4 (radius: 20)
[04:24:39 -106523.476358] AUTODETECT spr round 5 (radius: 25)
[04:28:55 -99443.062013] SPR radius for FAST iterations: 25 (autodetect)
[04:28:55 -99443.062013] Model parameter optimization (eps = 3.000000)
[04:29:26 -99328.799154] FAST spr round 1 (radius: 25)
[04:32:29] [worker #2] ML tree search #15, logLikelihood: -81753.079144
[04:32:43 -82732.522899] FAST spr round 2 (radius: 25)
[04:35:12 -81891.592786] FAST spr round 3 (radius: 25)
[04:37:34 -81806.848011] FAST spr round 4 (radius: 25)
[04:39:38 -81798.881523] FAST spr round 5 (radius: 25)
[04:41:35 -81798.881392] Model parameter optimization (eps = 1.000000)
[04:41:53 -81774.591656] SLOW spr round 1 (radius: 5)
[04:44:42 -81744.867624] SLOW spr round 2 (radius: 5)
[04:47:28 -81739.153638] SLOW spr round 3 (radius: 5)
[04:50:12 -81738.651957] SLOW spr round 4 (radius: 5)
[04:52:50 -81738.651592] SLOW spr round 5 (radius: 10)
[04:55:29 -81738.450807] SLOW spr round 6 (radius: 5)
[04:58:55 -81738.450710] SLOW spr round 7 (radius: 10)
[05:01:49 -81738.450703] SLOW spr round 8 (radius: 15)
[05:05:44 -81737.634634] SLOW spr round 9 (radius: 5)
[05:06:02] [worker #3] ML tree search #12, logLikelihood: -81748.768028
[05:09:18 -81737.634547] SLOW spr round 10 (radius: 10)
[05:12:20 -81737.634546] SLOW spr round 11 (radius: 15)
[05:16:15 -81737.634546] SLOW spr round 12 (radius: 20)
[05:20:58] [worker #1] ML tree search #14, logLikelihood: -81727.184280
[05:22:34 -81737.096969] SLOW spr round 13 (radius: 5)
[05:26:10 -81737.096184] SLOW spr round 14 (radius: 10)
[05:29:18 -81737.096145] SLOW spr round 15 (radius: 15)
[05:33:11 -81737.096143] SLOW spr round 16 (radius: 20)
[05:39:32 -81737.096142] SLOW spr round 17 (radius: 25)
[05:47:17 -81737.096142] Model parameter optimization (eps = 0.100000)

[05:47:24] [worker #0] ML tree search #13, logLikelihood: -81737.017133

[05:47:24 -390333.342094] Initial branch length optimization
[05:47:33 -330176.628696] Model parameter optimization (eps = 10.000000)
[05:48:22 -329506.428376] AUTODETECT spr round 1 (radius: 5)
[05:51:44 -199758.384932] AUTODETECT spr round 2 (radius: 10)
[05:55:14 -144613.588574] AUTODETECT spr round 3 (radius: 15)
[05:58:57 -123495.573527] AUTODETECT spr round 4 (radius: 20)
[06:03:51 -100311.746784] AUTODETECT spr round 5 (radius: 25)
[06:09:14 -98427.152204] SPR radius for FAST iterations: 25 (autodetect)
[06:09:14 -98427.152204] Model parameter optimization (eps = 3.000000)
[06:09:41 -98289.401653] FAST spr round 1 (radius: 25)
[06:09:43] [worker #2] ML tree search #19, logLikelihood: -81746.774326
[06:13:04 -82586.895890] FAST spr round 2 (radius: 25)
[06:15:43 -81853.418097] FAST spr round 3 (radius: 25)
[06:18:04 -81786.986912] FAST spr round 4 (radius: 25)
[06:20:11 -81778.777974] FAST spr round 5 (radius: 25)
[06:22:12 -81775.507638] FAST spr round 6 (radius: 25)
[06:24:11 -81775.507264] Model parameter optimization (eps = 1.000000)
[06:24:28 -81769.478787] SLOW spr round 1 (radius: 5)
[06:27:15 -81753.228942] SLOW spr round 2 (radius: 5)
[06:29:59 -81748.568250] SLOW spr round 3 (radius: 5)
[06:32:42 -81748.539588] SLOW spr round 4 (radius: 10)
[06:35:22 -81745.538404] SLOW spr round 5 (radius: 5)
[06:38:04] [worker #1] ML tree search #18, logLikelihood: -81741.697450
[06:38:44 -81745.538172] SLOW spr round 6 (radius: 10)
[06:41:36 -81745.011063] SLOW spr round 7 (radius: 5)
[06:44:54 -81745.011016] SLOW spr round 8 (radius: 10)
[06:47:42 -81745.011012] SLOW spr round 9 (radius: 15)
[06:51:32 -81744.602680] SLOW spr round 10 (radius: 5)
[06:55:01 -81744.602645] SLOW spr round 11 (radius: 10)
[06:58:01 -81744.602645] SLOW spr round 12 (radius: 15)
[07:01:46 -81743.188833] SLOW spr round 13 (radius: 5)
[07:05:15 -81743.188655] SLOW spr round 14 (radius: 10)
[07:08:16 -81743.188655] SLOW spr round 15 (radius: 15)
[07:12:00 -81743.188655] SLOW spr round 16 (radius: 20)
[07:12:59] [worker #3] ML tree search #16, logLikelihood: -81746.343440
[07:17:58 -81742.753544] SLOW spr round 17 (radius: 5)
[07:21:31 -81742.753500] SLOW spr round 18 (radius: 10)
[07:24:37 -81742.753493] SLOW spr round 19 (radius: 15)
[07:28:20 -81742.753489] SLOW spr round 20 (radius: 20)
[07:34:17 -81742.753487] SLOW spr round 21 (radius: 25)
[07:41:47 -81742.753486] Model parameter optimization (eps = 0.100000)

[07:42:00] [worker #0] ML tree search #17, logLikelihood: -81742.509831

[09:02:37] [worker #3] ML tree search #20, logLikelihood: -81736.051120

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.180573,0.378423) (0.383298,0.534350) (0.282164,1.133084) (0.153964,2.644350) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -81727.184280

AIC score: 167464.368560 / AICc score: 8211524.368560 / BIC score: 174241.062754
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=217).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UPU7/3_mltree/Q9UPU7.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UPU7/3_mltree/Q9UPU7.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UPU7/3_mltree/Q9UPU7.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UPU7/3_mltree/Q9UPU7.raxml.log

Analysis started: 20-Jul-2021 07:03:55 / finished: 20-Jul-2021 16:06:33

Elapsed time: 32557.543 seconds