RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 07-Jul-2021 08:22:59 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UPS6/2_msa/Q9UPS6_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UPS6/3_mltree/Q9UPS6 --seed 2 --threads 4 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UPS6/2_msa/Q9UPS6_trimmed_msa.fasta [00:00:00] Loaded alignment with 997 taxa and 182 sites WARNING: Sequences tr_B4NTK6_B4NTK6_DROSI_7240 and tr_B4JYT4_B4JYT4_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4NTK6_B4NTK6_DROSI_7240 and tr_B4ILS3_B4ILS3_DROSE_7238 are exactly identical! WARNING: Sequences tr_E2A9F9_E2A9F9_CAMFO_104421 and tr_A0A158NBI9_A0A158NBI9_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2A9F9_E2A9F9_CAMFO_104421 and tr_F4X8N6_F4X8N6_ACREC_103372 are exactly identical! WARNING: Sequences tr_E2A9F9_E2A9F9_CAMFO_104421 and tr_A0A195DRA3_A0A195DRA3_9HYME_471704 are exactly identical! WARNING: Sequences tr_E2A9F9_E2A9F9_CAMFO_104421 and tr_A0A195B9Q0_A0A195B9Q0_9HYME_520822 are exactly identical! WARNING: Sequences tr_E2A9F9_E2A9F9_CAMFO_104421 and tr_A0A195FC85_A0A195FC85_9HYME_34720 are exactly identical! WARNING: Sequences tr_E2A9F9_E2A9F9_CAMFO_104421 and tr_A0A151IGZ1_A0A151IGZ1_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A2R8PYC7_A0A2R8PYC7_DANRE_7955 and tr_A0A2R8QJZ9_A0A2R8QJZ9_DANRE_7955 are exactly identical! WARNING: Sequences tr_A0A2R8PYC7_A0A2R8PYC7_DANRE_7955 and tr_E9QGQ0_E9QGQ0_DANRE_7955 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and sp_Q5F3P8_SET1B_CHICK_9031 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_G1MZ24_G1MZ24_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_F7A1T9_F7A1T9_ORNAN_9258 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_K7GCM0_K7GCM0_PELSI_13735 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_G3VPZ2_G3VPZ2_SARHA_9305 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_H0Z6S1_H0Z6S1_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_U3IC20_U3IC20_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_A0A0Q3MMD4_A0A0Q3MMD4_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_A0A091ENC2_A0A091ENC2_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_A0A093QA27_A0A093QA27_9PASS_328815 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_A0A091UN82_A0A091UN82_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_A0A087RB16_A0A087RB16_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_A0A093JD22_A0A093JD22_STRCA_441894 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_A0A091WTX7_A0A091WTX7_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_A0A091GP00_A0A091GP00_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_A0A0A0A7H6_A0A0A0A7H6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_A0A093JEN1_A0A093JEN1_DRYPU_118200 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_A0A091HKQ7_A0A091HKQ7_CALAN_9244 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_A0A1U7R0M6_A0A1U7R0M6_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_A0A1V4JSK1_A0A1V4JSK1_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_A0A226NA31_A0A226NA31_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NKV4_F1NKV4_CHICK_9031 and tr_A0A226PZY3_A0A226PZY3_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q5B0Y5_SET1_EMENI_227321 and tr_A0A1L9PN80_A0A1L9PN80_ASPVE_1036611 are exactly identical! WARNING: Sequences sp_Q5B0Y5_SET1_EMENI_227321 and tr_A0A1L9TIT6_A0A1L9TIT6_9EURO_1036612 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and sp_E9PYH6_SET1A_MOUSE_10090 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_G1S1U7_G1S1U7_NOMLE_61853 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_G3I7C4_G3I7C4_CRIGR_10029 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_G3RIZ6_G3RIZ6_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_H2QAZ0_H2QAZ0_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_A0A0G2K6T6_A0A0G2K6T6_RAT_10116 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_H0XPN3_H0XPN3_OTOGA_30611 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_H0VU90_H0VU90_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and sp_O15047_SET1A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_A0A1D5R1K8_A0A1D5R1K8_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_G5E7G5_G5E7G5_LOXAF_9785 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_F7HY97_F7HY97_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_G7Q0Z3_G7Q0Z3_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_A0A096NHW8_A0A096NHW8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_A0A091E1A1_A0A091E1A1_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_A0A0D9R0E6_A0A0D9R0E6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_A0A3Q0E3N8_A0A3Q0E3N8_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_A0A1U8BLR9_A0A1U8BLR9_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_A0A2K5MEX5_A0A2K5MEX5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_A0A2K6C0I5_A0A2K6C0I5_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_A0A2K5Y918_A0A2K5Y918_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_A0A2R9AH60_A0A2R9AH60_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A0U1RNP2_A0A0U1RNP2_MOUSE_10090 and tr_A0A2Y9E3Y3_A0A2Y9E3Y3_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_A0A2I3HLR7_A0A2I3HLR7_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_G3QV10_G3QV10_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_H2NIY3_H2NIY3_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_A0A2I3RBF6_A0A2I3RBF6_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_W5PTB0_W5PTB0_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_A0A287CSQ0_A0A287CSQ0_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_H0XKT2_H0XKT2_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and sp_Q9UPS6_SET1B_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_F7E7X9_F7E7X9_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_G5AWN7_G5AWN7_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_G3TSW5_G3TSW5_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_A0A286ZTQ9_A0A286ZTQ9_PIG_9823 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_G1M7D2_G1M7D2_AILME_9646 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_G7PJ71_G7PJ71_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_M3WID5_M3WID5_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_A0A096N175_A0A096N175_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_A0A091CVA7_A0A091CVA7_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_A0A1U8CLL8_A0A1U8CLL8_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_A0A2K5MHK0_A0A2K5MHK0_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_A0A2K6AVC0_A0A2K6AVC0_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_A0A2K5ZSX2_A0A2K5ZSX2_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_A0A2R9CHH3_A0A2R9CHH3_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_A0A2U3VLY4_A0A2U3VLY4_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_A0A2U3YSN2_A0A2U3YSN2_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_A0A2Y9R860_A0A2Y9R860_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_A0A2Y9KH79_A0A2Y9KH79_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_A0A2Y9Q7R4_A0A2Y9Q7R4_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_A0A2Y9SHM2_A0A2Y9SHM2_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q8CFT2_SET1B_MOUSE_10090 and tr_A0A384AQX0_A0A384AQX0_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3YKB9_M3YKB9_MUSPF_9669 and tr_F7DRS8_F7DRS8_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YKB9_M3YKB9_MUSPF_9669 and tr_W5PEE2_W5PEE2_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YKB9_M3YKB9_MUSPF_9669 and tr_F1RG84_F1RG84_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YKB9_M3YKB9_MUSPF_9669 and tr_E1BLX2_E1BLX2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YKB9_M3YKB9_MUSPF_9669 and tr_L5KJP7_L5KJP7_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YKB9_M3YKB9_MUSPF_9669 and tr_M3VYS8_M3VYS8_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YKB9_M3YKB9_MUSPF_9669 and tr_A0A1S3WK57_A0A1S3WK57_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3YKB9_M3YKB9_MUSPF_9669 and tr_A0A2U3VQ44_A0A2U3VQ44_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YKB9_M3YKB9_MUSPF_9669 and tr_A0A2U3XEP4_A0A2U3XEP4_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YKB9_M3YKB9_MUSPF_9669 and tr_A0A2Y9LKR3_A0A2Y9LKR3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YKB9_M3YKB9_MUSPF_9669 and tr_A0A2Y9PKY4_A0A2Y9PKY4_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YKB9_M3YKB9_MUSPF_9669 and tr_A0A2Y9SKT6_A0A2Y9SKT6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YKB9_M3YKB9_MUSPF_9669 and tr_A0A2Y9SLK0_A0A2Y9SLK0_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YKB9_M3YKB9_MUSPF_9669 and tr_A0A384AI80_A0A384AI80_BALAS_310752 are exactly identical! WARNING: Sequences tr_B6H5R8_B6H5R8_PENRW_500485 and tr_A0A0A2I9Q7_A0A0A2I9Q7_PENEN_27334 are exactly identical! WARNING: Sequences tr_B6H5R8_B6H5R8_PENRW_500485 and tr_W6QDZ6_W6QDZ6_PENRF_1365484 are exactly identical! WARNING: Sequences tr_B6H5R8_B6H5R8_PENRW_500485 and tr_A0A0M8NQX1_A0A0M8NQX1_9EURO_229535 are exactly identical! WARNING: Sequences tr_B6H5R8_B6H5R8_PENRW_500485 and tr_A0A0G4PFL1_A0A0G4PFL1_PENCA_1429867 are exactly identical! WARNING: Sequences tr_B6H5R8_B6H5R8_PENRW_500485 and tr_A0A135L8Y5_A0A135L8Y5_PENPA_5078 are exactly identical! WARNING: Sequences tr_B6H5R8_B6H5R8_PENRW_500485 and tr_A0A1V6RIF9_A0A1V6RIF9_9EURO_29845 are exactly identical! WARNING: Sequences tr_B6H5R8_B6H5R8_PENRW_500485 and tr_A0A1V6R7E7_A0A1V6R7E7_9EURO_60172 are exactly identical! WARNING: Sequences tr_B6H5R8_B6H5R8_PENRW_500485 and tr_A0A1V6XGI0_A0A1V6XGI0_PENNA_60175 are exactly identical! WARNING: Sequences tr_E3RD63_E3RD63_PYRTT_861557 and tr_B2WFN9_B2WFN9_PYRTR_426418 are exactly identical! WARNING: Sequences tr_E3RD63_E3RD63_PYRTT_861557 and tr_A0A177DMG8_A0A177DMG8_ALTAL_5599 are exactly identical! WARNING: Sequences tr_E3RD63_E3RD63_PYRTT_861557 and tr_A0A317BIX4_A0A317BIX4_9PLEO_45151 are exactly identical! WARNING: Sequences sp_Q1DR06_SET1_COCIM_246410 and tr_E9DG22_E9DG22_COCPS_443226 are exactly identical! WARNING: Sequences sp_Q1DR06_SET1_COCIM_246410 and tr_A0A0J6Y6S2_A0A0J6Y6S2_COCIT_404692 are exactly identical! WARNING: Sequences tr_G2WUF0_G2WUF0_VERDV_498257 and tr_C9SG75_C9SG75_VERA1_526221 are exactly identical! WARNING: Sequences tr_G2WUF0_G2WUF0_VERDV_498257 and tr_A0A0G4MDG9_A0A0G4MDG9_9PEZI_100787 are exactly identical! WARNING: Sequences tr_G2WUF0_G2WUF0_VERDV_498257 and tr_A0A0G4MDV6_A0A0G4MDV6_9PEZI_100787 are exactly identical! WARNING: Sequences tr_C1G9P9_C1G9P9_PARBD_502780 and tr_C1GQQ3_C1GQQ3_PARBA_502779 are exactly identical! WARNING: Sequences tr_C0P124_C0P124_AJECG_447093 and tr_A0A179UBF4_A0A179UBF4_BLAGS_559298 are exactly identical! WARNING: Sequences tr_C0P124_C0P124_AJECG_447093 and tr_C5GGE1_C5GGE1_AJEDR_559297 are exactly identical! WARNING: Sequences tr_C0P124_C0P124_AJECG_447093 and tr_F0UW35_F0UW35_AJEC8_544711 are exactly identical! WARNING: Sequences tr_C0P124_C0P124_AJECG_447093 and tr_A6R376_A6R376_AJECN_339724 are exactly identical! WARNING: Sequences tr_C0P124_C0P124_AJECG_447093 and tr_A0A2B7WX41_A0A2B7WX41_9EURO_2060905 are exactly identical! WARNING: Sequences tr_C0P124_C0P124_AJECG_447093 and tr_A0A1J9QLI1_A0A1J9QLI1_9EURO_1658174 are exactly identical! WARNING: Sequences tr_B8M7C8_B8M7C8_TALSN_441959 and tr_A0A364L3E2_A0A364L3E2_9EURO_1196081 are exactly identical! WARNING: Sequences sp_Q8X0S9_SET1_NEUCR_367110 and tr_F7VTR0_F7VTR0_SORMK_771870 are exactly identical! WARNING: Sequences sp_Q8X0S9_SET1_NEUCR_367110 and tr_G4UF57_G4UF57_NEUT9_510952 are exactly identical! WARNING: Sequences tr_G1TE93_G1TE93_RABIT_9986 and tr_H0UV65_H0UV65_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G1TE93_G1TE93_RABIT_9986 and tr_F7IJW4_F7IJW4_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1TE93_G1TE93_RABIT_9986 and tr_A0A1S3FR74_A0A1S3FR74_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G1TE93_G1TE93_RABIT_9986 and tr_A0A384BYH7_A0A384BYH7_URSMA_29073 are exactly identical! WARNING: Sequences tr_B5DVQ2_B5DVQ2_DROPS_46245 and tr_B4NIW7_B4NIW7_DROWI_7260 are exactly identical! WARNING: Sequences tr_B5DVQ2_B5DVQ2_DROPS_46245 and tr_B4GM96_B4GM96_DROPE_7234 are exactly identical! WARNING: Sequences tr_C5FY64_C5FY64_ARTOC_554155 and tr_E4UWS4_E4UWS4_ARTGP_535722 are exactly identical! WARNING: Sequences tr_C5FY64_C5FY64_ARTOC_554155 and tr_F2SHE7_F2SHE7_TRIRC_559305 are exactly identical! WARNING: Sequences tr_C5FY64_C5FY64_ARTOC_554155 and tr_F2PHP0_F2PHP0_TRIEC_559882 are exactly identical! WARNING: Sequences tr_C5FY64_C5FY64_ARTOC_554155 and tr_A0A059J6Z3_A0A059J6Z3_9EURO_1215338 are exactly identical! WARNING: Sequences tr_C5FY64_C5FY64_ARTOC_554155 and tr_A0A178F204_A0A178F204_TRIRU_5551 are exactly identical! WARNING: Sequences tr_F6XR34_F6XR34_MONDO_13616 and tr_U3K3C6_U3K3C6_FICAL_59894 are exactly identical! WARNING: Sequences tr_F9F738_F9F738_FUSOF_660025 and tr_A0A0D2XC24_A0A0D2XC24_FUSO4_426428 are exactly identical! WARNING: Sequences tr_F9F738_F9F738_FUSOF_660025 and tr_X0D026_X0D026_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9F738_F9F738_FUSOF_660025 and tr_A0A2H3TLC0_A0A2H3TLC0_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9F738_F9F738_FUSOF_660025 and tr_A0A2H3H571_A0A2H3H571_FUSOX_327505 are exactly identical! WARNING: Sequences tr_E9F3R5_E9F3R5_METRA_655844 and tr_A0A0B2WN90_A0A0B2WN90_METAS_1081103 are exactly identical! WARNING: Sequences tr_E9F3R5_E9F3R5_METRA_655844 and tr_A0A0B4I0E5_A0A0B4I0E5_METMF_1276143 are exactly identical! WARNING: Sequences tr_E9F3R5_E9F3R5_METRA_655844 and tr_A0A0D9NVQ7_A0A0D9NVQ7_METAN_1291518 are exactly identical! WARNING: Sequences tr_E9F3R5_E9F3R5_METRA_655844 and tr_A0A179FDH3_A0A179FDH3_METCM_1380566 are exactly identical! WARNING: Sequences sp_Q4WNH8_SET1_ASPFU_330879 and tr_A1DM29_A1DM29_NEOFI_331117 are exactly identical! WARNING: Sequences sp_Q4WNH8_SET1_ASPFU_330879 and tr_A0A0K8LHA4_A0A0K8LHA4_9EURO_91492 are exactly identical! WARNING: Sequences sp_Q4WNH8_SET1_ASPFU_330879 and tr_A0A0S7DEM6_A0A0S7DEM6_9EURO_293939 are exactly identical! WARNING: Sequences sp_Q4WNH8_SET1_ASPFU_330879 and tr_A0A2I1CDQ4_A0A2I1CDQ4_9EURO_1392255 are exactly identical! WARNING: Sequences tr_J5JL26_J5JL26_BEAB2_655819 and tr_A0A0A2VE01_A0A0A2VE01_BEABA_1245745 are exactly identical! WARNING: Sequences tr_J5JL26_J5JL26_BEAB2_655819 and tr_A0A2N6NKZ9_A0A2N6NKZ9_BEABA_176275 are exactly identical! WARNING: Sequences tr_A0A3B5QVC4_A0A3B5QVC4_XIPMA_8083 and tr_A0A096LYR6_A0A096LYR6_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4A0Q2_M4A0Q2_XIPMA_8083 and tr_I3JU36_I3JU36_ORENI_8128 are exactly identical! WARNING: Sequences tr_M4A0Q2_M4A0Q2_XIPMA_8083 and tr_A0A087Y6R1_A0A087Y6R1_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088AFW8_A0A088AFW8_APIME_7460 and tr_E2C3Y5_E2C3Y5_HARSA_610380 are exactly identical! WARNING: Sequences tr_A0A088AFW8_A0A088AFW8_APIME_7460 and tr_A0A2A3EIM2_A0A2A3EIM2_APICC_94128 are exactly identical! WARNING: Sequences tr_H2TCX0_H2TCX0_TAKRU_31033 and tr_H3DBT3_H3DBT3_TETNG_99883 are exactly identical! WARNING: Sequences tr_H2TH06_H2TH06_TAKRU_31033 and tr_H3BYU8_H3BYU8_TETNG_99883 are exactly identical! WARNING: Sequences tr_G9NEZ0_G9NEZ0_HYPAI_452589 and tr_A0A0W7VIR2_A0A0W7VIR2_9HYPO_398673 are exactly identical! WARNING: Sequences tr_G9NEZ0_G9NEZ0_HYPAI_452589 and tr_A0A2T3YSH4_A0A2T3YSH4_9HYPO_1042311 are exactly identical! WARNING: Sequences sp_Q2UMH3_SET1_ASPOR_510516 and tr_A0A017SBD4_A0A017SBD4_9EURO_1388766 are exactly identical! WARNING: Sequences sp_Q2UMH3_SET1_ASPOR_510516 and tr_A0A0L1J2S6_A0A0L1J2S6_ASPNO_1509407 are exactly identical! WARNING: Sequences sp_Q2UMH3_SET1_ASPOR_510516 and tr_A0A1E3BN36_A0A1E3BN36_9EURO_573508 are exactly identical! WARNING: Sequences sp_Q2UMH3_SET1_ASPOR_510516 and tr_A0A1L9VTK7_A0A1L9VTK7_ASPGL_1160497 are exactly identical! WARNING: Sequences sp_Q2UMH3_SET1_ASPOR_510516 and tr_A0A1L9RPN4_A0A1L9RPN4_ASPWE_1073089 are exactly identical! WARNING: Sequences sp_Q2UMH3_SET1_ASPOR_510516 and tr_A0A1S9DP35_A0A1S9DP35_ASPOZ_5062 are exactly identical! WARNING: Sequences sp_Q2UMH3_SET1_ASPOR_510516 and tr_A0A397HIA4_A0A397HIA4_9EURO_41047 are exactly identical! WARNING: Sequences sp_Q2UMH3_SET1_ASPOR_510516 and tr_A0A2G7FGT7_A0A2G7FGT7_9EURO_656916 are exactly identical! WARNING: Sequences tr_A0A0K0J221_A0A0K0J221_BRUMA_6279 and tr_A0A0R3QRB2_A0A0R3QRB2_9BILA_42155 are exactly identical! WARNING: Sequences tr_A2RBI5_A2RBI5_ASPNC_425011 and tr_G7XT49_G7XT49_ASPKW_1033177 are exactly identical! WARNING: Sequences tr_A2RBI5_A2RBI5_ASPNC_425011 and tr_G3YEN6_G3YEN6_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A2RBI5_A2RBI5_ASPNC_425011 and tr_A0A100INM8_A0A100INM8_ASPNG_5061 are exactly identical! WARNING: Sequences tr_A2RBI5_A2RBI5_ASPNC_425011 and tr_A0A146F6T9_A0A146F6T9_9EURO_1069201 are exactly identical! WARNING: Sequences tr_A2RBI5_A2RBI5_ASPNC_425011 and tr_A0A1L9NMR9_A0A1L9NMR9_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A2RBI5_A2RBI5_ASPNC_425011 and tr_A0A1L9UGJ6_A0A1L9UGJ6_9EURO_767769 are exactly identical! WARNING: Sequences tr_A2RBI5_A2RBI5_ASPNC_425011 and tr_A0A1R3RQY7_A0A1R3RQY7_ASPC5_602072 are exactly identical! WARNING: Sequences tr_A2RBI5_A2RBI5_ASPNC_425011 and tr_A0A1R3RR44_A0A1R3RR44_ASPC5_602072 are exactly identical! WARNING: Sequences tr_A2RBI5_A2RBI5_ASPNC_425011 and tr_A0A317UR18_A0A317UR18_9EURO_1448314 are exactly identical! WARNING: Sequences tr_A2RBI5_A2RBI5_ASPNC_425011 and tr_A0A317VWP2_A0A317VWP2_9EURO_1450535 are exactly identical! WARNING: Sequences tr_A2RBI5_A2RBI5_ASPNC_425011 and tr_A0A319A8L9_A0A319A8L9_9EURO_1450533 are exactly identical! WARNING: Sequences tr_A2RBI5_A2RBI5_ASPNC_425011 and tr_A0A319EHZ0_A0A319EHZ0_9EURO_1448318 are exactly identical! WARNING: Sequences tr_A2RBI5_A2RBI5_ASPNC_425011 and tr_A0A395GUH8_A0A395GUH8_9EURO_1448316 are exactly identical! WARNING: Sequences tr_D5GKI6_D5GKI6_TUBMM_656061 and tr_A0A317SC12_A0A317SC12_9PEZI_42249 are exactly identical! WARNING: Sequences tr_Q7QKB2_Q7QKB2_ANOGA_7165 and tr_A0A084VB94_A0A084VB94_ANOSI_74873 are exactly identical! WARNING: Sequences tr_G9MEL2_G9MEL2_HYPVG_413071 and tr_G0RV76_G0RV76_HYPJQ_431241 are exactly identical! WARNING: Sequences tr_G9MEL2_G9MEL2_HYPVG_413071 and tr_A0A0G0A6N5_A0A0G0A6N5_TRIHA_5544 are exactly identical! WARNING: Sequences tr_G9MEL2_G9MEL2_HYPVG_413071 and tr_A0A2T4CE45_A0A2T4CE45_TRILO_983965 are exactly identical! WARNING: Sequences tr_G9MEL2_G9MEL2_HYPVG_413071 and tr_A0A2T4B0K5_A0A2T4B0K5_9HYPO_58853 are exactly identical! WARNING: Sequences tr_G9MEL2_G9MEL2_HYPVG_413071 and tr_A0A2T4A600_A0A2T4A600_TRIHA_983964 are exactly identical! WARNING: Sequences tr_H1UY00_H1UY00_COLHI_759273 and tr_E3QB19_E3QB19_COLGM_645133 are exactly identical! WARNING: Sequences tr_H1UY00_H1UY00_COLHI_759273 and tr_A0A066X8W5_A0A066X8W5_COLSU_1173701 are exactly identical! WARNING: Sequences tr_H1UY00_H1UY00_COLHI_759273 and tr_A0A161WGM7_A0A161WGM7_9PEZI_708197 are exactly identical! WARNING: Sequences tr_H1UY00_H1UY00_COLHI_759273 and tr_A0A167C287_A0A167C287_9PEZI_1573173 are exactly identical! WARNING: Sequences tr_F4P786_F4P786_BATDJ_684364 and tr_A0A177WSF0_A0A177WSF0_BATDE_403673 are exactly identical! WARNING: Sequences tr_I1R7T6_I1R7T6_ORYGL_4538 and tr_Q2QM91_Q2QM91_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_G3PXW7_G3PXW7_GASAC_69293 and tr_A0A2U9CHM5_A0A2U9CHM5_SCOMX_52904 are exactly identical! WARNING: Sequences tr_E6R4D3_E6R4D3_CRYGW_367775 and tr_A0A095D0F1_A0A095D0F1_CRYGR_294750 are exactly identical! WARNING: Sequences tr_J9JK66_J9JK66_ACYPI_7029 and tr_J9KN77_J9KN77_ACYPI_7029 are exactly identical! WARNING: Sequences tr_F9XEZ7_F9XEZ7_ZYMTI_336722 and tr_A0A1X7RXW4_A0A1X7RXW4_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_G2XQ89_G2XQ89_BOTF4_999810 and tr_M7U519_M7U519_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_E3MCL7_E3MCL7_CAERE_31234 and tr_A0A260ZEW5_A0A260ZEW5_9PELO_1503980 are exactly identical! WARNING: Sequences tr_B3SAP0_B3SAP0_TRIAD_10228 and tr_A0A369RPI8_A0A369RPI8_9METZ_287889 are exactly identical! WARNING: Sequences tr_W7MJH0_W7MJH0_GIBM7_334819 and tr_S0DVX0_S0DVX0_GIBF5_1279085 are exactly identical! WARNING: Sequences tr_W7MJH0_W7MJH0_GIBM7_334819 and tr_A0A2K0W2A1_A0A2K0W2A1_GIBNY_42673 are exactly identical! WARNING: Sequences tr_W7MJH0_W7MJH0_GIBM7_334819 and tr_A0A365MQE6_A0A365MQE6_GIBIN_948311 are exactly identical! WARNING: Sequences tr_L0PBG5_L0PBG5_PNEJ8_1209962 and tr_A0A0W4ZVM4_A0A0W4ZVM4_PNEJ7_1408657 are exactly identical! WARNING: Sequences tr_L8FN34_L8FN34_PSED2_658429 and tr_A0A094D0H8_A0A094D0H8_9PEZI_1420910 are exactly identical! WARNING: Sequences tr_L8FN34_L8FN34_PSED2_658429 and tr_A0A094EAE9_A0A094EAE9_9PEZI_1420912 are exactly identical! WARNING: Sequences tr_L8FN34_L8FN34_PSED2_658429 and tr_A0A1B8CER7_A0A1B8CER7_9PEZI_1622147 are exactly identical! WARNING: Sequences tr_L8FN34_L8FN34_PSED2_658429 and tr_A0A1B8FAT7_A0A1B8FAT7_9PEZI_1622149 are exactly identical! WARNING: Sequences tr_L2GFX7_L2GFX7_COLFN_1213859 and tr_T0KN91_T0KN91_COLGC_1237896 are exactly identical! WARNING: Sequences tr_L2GFX7_L2GFX7_COLFN_1213859 and tr_A0A1Q8RJH9_A0A1Q8RJH9_9PEZI_708187 are exactly identical! WARNING: Sequences tr_M4EGR9_M4EGR9_BRARP_51351 and tr_A0A0D3E604_A0A0D3E604_BRAOL_109376 are exactly identical! WARNING: Sequences tr_S2J539_S2J539_MUCC1_1220926 and tr_A0A168NLZ5_A0A168NLZ5_MUCCL_747725 are exactly identical! WARNING: Sequences tr_M2S4M4_M2S4M4_COCSN_665912 and tr_R0I5R8_R0I5R8_SETT2_671987 are exactly identical! WARNING: Sequences tr_M2S4M4_M2S4M4_COCSN_665912 and tr_M2TX28_M2TX28_COCH5_701091 are exactly identical! WARNING: Sequences tr_M2S4M4_M2S4M4_COCSN_665912 and tr_W6YTH9_W6YTH9_COCCA_930089 are exactly identical! WARNING: Sequences tr_M2S4M4_M2S4M4_COCSN_665912 and tr_W6Z0I4_W6Z0I4_COCMI_930090 are exactly identical! WARNING: Sequences tr_U5HC14_U5HC14_USTV1_683840 and tr_A0A238FJ25_A0A238FJ25_9BASI_269621 are exactly identical! WARNING: Sequences tr_U5HC14_U5HC14_USTV1_683840 and tr_A0A2X0MF79_A0A2X0MF79_9BASI_796604 are exactly identical! WARNING: Sequences tr_U5HC14_U5HC14_USTV1_683840 and tr_A0A2X0M9X3_A0A2X0M9X3_9BASI_289078 are exactly identical! WARNING: Sequences tr_V2WXV1_V2WXV1_MONRO_1381753 and tr_A0A0W0G353_A0A0W0G353_9AGAR_221103 are exactly identical! WARNING: Sequences tr_W2QP06_W2QP06_PHYPN_761204 and tr_A0A0W8C3S3_A0A0W8C3S3_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2QP06_W2QP06_PHYPN_761204 and tr_W2LUZ2_W2LUZ2_PHYPR_4792 are exactly identical! WARNING: Sequences tr_W9XMV9_W9XMV9_9EURO_1182541 and tr_A0A0D2FV95_A0A0D2FV95_9EURO_5601 are exactly identical! WARNING: Sequences tr_A0A010Q432_A0A010Q432_9PEZI_1445577 and tr_A0A135RMG4_A0A135RMG4_9PEZI_1209931 are exactly identical! WARNING: Sequences tr_A0A010Q432_A0A010Q432_9PEZI_1445577 and tr_A0A1G4B3A3_A0A1G4B3A3_9PEZI_1209926 are exactly identical! WARNING: Sequences tr_A0A015IIK1_A0A015IIK1_9GLOM_1432141 and tr_A0A2I1DRZ6_A0A2I1DRZ6_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015IIK1_A0A015IIK1_9GLOM_1432141 and tr_A0A2H5UE62_A0A2H5UE62_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A015IIK1_A0A015IIK1_9GLOM_1432141 and tr_A0A2Z6RSI4_A0A2Z6RSI4_9GLOM_94130 are exactly identical! WARNING: Sequences tr_A0A044V2E6_A0A044V2E6_ONCVO_6282 and tr_A0A182DWX3_A0A182DWX3_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A067HBU6_A0A067HBU6_CITSI_2711 and tr_V4TB49_V4TB49_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067HBU6_A0A067HBU6_CITSI_2711 and tr_A0A2H5PAJ3_A0A2H5PAJ3_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A084QF85_A0A084QF85_STAC4_1283841 and tr_A0A084RH14_A0A084RH14_STACH_1283842 are exactly identical! WARNING: Sequences tr_A0A060SQT8_A0A060SQT8_PYCCI_5643 and tr_A0A1M2VYH2_A0A1M2VYH2_TRAPU_154538 are exactly identical! WARNING: Sequences tr_A0A0A0KDJ0_A0A0A0KDJ0_CUCSA_3659 and tr_A0A1S4E4W9_A0A1S4E4W9_CUCME_3656 are exactly identical! WARNING: Sequences tr_A0A0A2LBW1_A0A0A2LBW1_PENIT_40296 and tr_A0A1Q5U7Z4_A0A1Q5U7Z4_9EURO_1316194 are exactly identical! WARNING: Sequences tr_A0A0D2RJD2_A0A0D2RJD2_GOSRA_29730 and tr_A0A1U8NJH7_A0A1U8NJH7_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2RJD2_A0A0D2RJD2_GOSRA_29730 and tr_A0A1U8NR87_A0A1U8NR87_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0F0I9S2_A0A0F0I9S2_ASPPU_1403190 and tr_A0A1F7ZN66_A0A1F7ZN66_9EURO_109264 are exactly identical! WARNING: Sequences tr_A0A0F8UGJ6_A0A0F8UGJ6_9EURO_308745 and tr_A0A2T5LSE3_A0A2T5LSE3_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0G2FK43_A0A0G2FK43_9PEZI_1214573 and tr_A0A2P5IGE7_A0A2P5IGE7_9PEZI_158607 are exactly identical! WARNING: Sequences tr_A0A0M9ETW8_A0A0M9ETW8_FUSLA_179993 and sp_Q4I5R3_SET1_GIBZE_229533 are exactly identical! WARNING: Sequences tr_A0A0M9ETW8_A0A0M9ETW8_FUSLA_179993 and tr_A0A1B8ADZ2_A0A1B8ADZ2_FUSPO_36050 are exactly identical! WARNING: Sequences tr_A0A0M9ETW8_A0A0M9ETW8_FUSLA_179993 and tr_A0A2T4H0A1_A0A2T4H0A1_FUSCU_5516 are exactly identical! WARNING: Sequences tr_A0A0M9ETW8_A0A0M9ETW8_FUSLA_179993 and tr_A0A2L2SR74_A0A2L2SR74_9HYPO_56646 are exactly identical! WARNING: Sequences tr_A0A0A1MRB8_A0A0A1MRB8_9FUNG_58291 and tr_A0A0A1PEG1_A0A0A1PEG1_9FUNG_58291 are exactly identical! WARNING: Sequences tr_A0A151M7M9_A0A151M7M9_ALLMI_8496 and tr_A0A3Q0FUB6_A0A3Q0FUB6_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0D2H039_A0A0D2H039_9EURO_1442368 and tr_A0A0D2KHC6_A0A0D2KHC6_9EURO_1442371 are exactly identical! WARNING: Sequences tr_A0A0D2H039_A0A0D2H039_9EURO_1442368 and tr_A0A0D2CJP6_A0A0D2CJP6_9EURO_569365 are exactly identical! WARNING: Sequences tr_A0A0D2H039_A0A0D2H039_9EURO_1442368 and tr_A0A178ZR10_A0A178ZR10_9EURO_1367422 are exactly identical! WARNING: Sequences tr_A0A0C3NGX4_A0A0C3NGX4_PHLGI_745531 and tr_A0A2H3JGS7_A0A2H3JGS7_WOLCO_742152 are exactly identical! WARNING: Sequences tr_A0A0V0ZU34_A0A0V0ZU34_9BILA_990121 and tr_A0A0V1PFT3_A0A0V1PFT3_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0ZU34_A0A0V0ZU34_9BILA_990121 and tr_A0A0V0U2A1_A0A0V0U2A1_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0Y165_A0A0V0Y165_TRIPS_6337 and tr_A0A0V1H882_A0A0V1H882_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0P1BRR8_A0A0P1BRR8_9BASI_401625 and tr_A0A316W1H3_A0A316W1H3_9BASI_1522189 are exactly identical! WARNING: Sequences tr_A0A101MSL4_A0A101MSL4_9EURO_48697 and tr_A0A1F5L718_A0A1F5L718_9EURO_1835702 are exactly identical! WARNING: Sequences tr_A0A101MSL4_A0A101MSL4_9EURO_48697 and tr_A0A1V6NQP0_A0A1V6NQP0_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A101MSL4_A0A101MSL4_9EURO_48697 and tr_A0A1V6Q0B8_A0A1V6Q0B8_9EURO_416450 are exactly identical! WARNING: Sequences tr_A0A164YL21_A0A164YL21_9HOMO_1314777 and tr_A0A166I6B7_A0A166I6B7_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A194VIG1_A0A194VIG1_9PEZI_105487 and tr_A0A194V072_A0A194V072_9PEZI_694573 are exactly identical! WARNING: Sequences tr_A0A1S4DHD2_A0A1S4DHD2_TOBAC_4097 and tr_A0A1U7UY13_A0A1U7UY13_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3L6K6_A0A1S3L6K6_SALSA_8030 and tr_A0A1S3LTF3_A0A1S3LTF3_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3L6K6_A0A1S3L6K6_SALSA_8030 and tr_A0A060VQD0_A0A060VQD0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3L6K6_A0A1S3L6K6_SALSA_8030 and tr_A0A060W1P1_A0A060W1P1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3RC02_A0A1S3RC02_SALSA_8030 and tr_A0A1S3S3P7_A0A1S3S3P7_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3U5B6_A0A1S3U5B6_VIGRR_3916 and tr_A0A3Q0EWM3_A0A3Q0EWM3_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A1S3U5B6_A0A1S3U5B6_VIGRR_3916 and tr_A0A3Q0F199_A0A3Q0F199_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A1B7P3D8_A0A1B7P3D8_9EURO_1658172 and tr_A0A1J9QQW7_A0A1J9QQW7_9EURO_1447872 are exactly identical! WARNING: Sequences tr_A0A1B7P3D8_A0A1B7P3D8_9EURO_1658172 and tr_A0A2B7ZCD4_A0A2B7ZCD4_9EURO_73230 are exactly identical! WARNING: Sequences tr_A0A1B7MZL1_A0A1B7MZL1_9HOMO_1314800 and tr_A0A1J8Q7H5_A0A1J8Q7H5_9HOMO_180088 are exactly identical! WARNING: Sequences tr_A0A1L9WWI2_A0A1L9WWI2_ASPAC_690307 and tr_A0A319D865_A0A319D865_9EURO_1448315 are exactly identical! WARNING: Sequences tr_A0A1L9WWI2_A0A1L9WWI2_ASPAC_690307 and tr_A0A2V5HKU5_A0A2V5HKU5_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A1L9WWI2_A0A1L9WWI2_ASPAC_690307 and tr_A0A2V5HG37_A0A2V5HG37_9EURO_1450538 are exactly identical! WARNING: Sequences tr_A0A1V8TXI4_A0A1V8TXI4_9PEZI_1974281 and tr_A0A1V8U9V1_A0A1V8U9V1_9PEZI_1974281 are exactly identical! WARNING: Sequences tr_A0A1V8TXI4_A0A1V8TXI4_9PEZI_1974281 and tr_A0A1V8T7L2_A0A1V8T7L2_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A1V8TXI4_A0A1V8TXI4_9PEZI_1974281 and tr_A0A1V8TPG6_A0A1V8TPG6_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A2H3D6F2_A0A2H3D6F2_ARMGA_47427 and tr_A0A2H3B4P0_A0A2H3B4P0_9AGAR_1076256 are exactly identical! WARNING: Sequences tr_A0A2H3D6F2_A0A2H3D6F2_ARMGA_47427 and tr_A0A284RPD3_A0A284RPD3_9AGAR_47428 are exactly identical! WARNING: Sequences tr_A0A2H3FFQ8_A0A2H3FFQ8_9HELO_946125 and tr_A0A2H3FG55_A0A2H3FG55_9HELO_946125 are exactly identical! WARNING: Sequences tr_A0A2D0T6T9_A0A2D0T6T9_ICTPU_7998 and tr_A0A2D0T6U8_A0A2D0T6U8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2G5HEI7_A0A2G5HEI7_CERBT_122368 and tr_A0A2S6BU54_A0A2S6BU54_9PEZI_357750 are exactly identical! WARNING: Sequences tr_A0A2I2F6P6_A0A2I2F6P6_9EURO_41067 and tr_A0A2J5I2Z9_A0A2J5I2Z9_9EURO_482145 are exactly identical! WARNING: Sequences tr_A0A2N5RWW5_A0A2N5RWW5_9BASI_200324 and tr_A0A2N5W040_A0A2N5W040_9BASI_200324 are exactly identical! WARNING: Sequences tr_A0A2S7QHN5_A0A2S7QHN5_9HELO_2070414 and tr_A0A2S7QZP9_A0A2S7QZP9_9HELO_2070412 are exactly identical! WARNING: Sequences tr_A0A2P7YTP7_A0A2P7YTP7_9ASCO_418784 and tr_A0A2V1AVC6_A0A2V1AVC6_9ASCO_45357 are exactly identical! WARNING: Sequences tr_A0A1Y2W9Q5_A0A1Y2W9Q5_9PEZI_1001833 and tr_A0A1Y2X735_A0A1Y2X735_9PEZI_1001832 are exactly identical! WARNING: Sequences tr_A0A318Z3E6_A0A318Z3E6_9EURO_1450539 and tr_A0A395HR25_A0A395HR25_9EURO_1450537 are exactly identical! WARNING: Sequences tr_A0A367JR01_A0A367JR01_9FUNG_86630 and tr_A0A367KAB3_A0A367KAB3_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A367XRD4_A0A367XRD4_9ASCO_5486 and tr_A0A367Y534_A0A367Y534_9ASCO_5486 are exactly identical! WARNING: Duplicate sequences found: 291 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UPS6/3_mltree/Q9UPS6.raxml.reduced.phy Alignment comprises 1 partitions and 182 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 182 / 182 Gaps: 3.30 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UPS6/3_mltree/Q9UPS6.raxml.rba Parallelization scheme autoconfig: 4 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 997 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 182 / 14560 [00:00:00] Data distribution: max. searches per worker: 5 Starting ML tree search with 20 distinct starting trees [00:00:00 -207234.077004] Initial branch length optimization [00:00:04 -172680.317294] Model parameter optimization (eps = 10.000000) [00:00:52 -172160.280651] AUTODETECT spr round 1 (radius: 5) [00:03:07 -111902.551411] AUTODETECT spr round 2 (radius: 10) [00:05:38 -78824.403305] AUTODETECT spr round 3 (radius: 15) [00:08:12 -62481.722934] AUTODETECT spr round 4 (radius: 20) [00:10:52 -53725.076448] AUTODETECT spr round 5 (radius: 25) [00:14:04 -52265.384140] SPR radius for FAST iterations: 25 (autodetect) [00:14:04 -52265.384140] Model parameter optimization (eps = 3.000000) [00:14:24 -52149.852602] FAST spr round 1 (radius: 25) [00:16:51 -44653.771912] FAST spr round 2 (radius: 25) [00:18:42 -43946.546255] FAST spr round 3 (radius: 25) [00:20:23 -43883.894507] FAST spr round 4 (radius: 25) [00:21:55 -43880.536311] FAST spr round 5 (radius: 25) [00:23:21 -43880.535671] Model parameter optimization (eps = 1.000000) [00:23:36 -43869.042633] SLOW spr round 1 (radius: 5) [00:25:23 -43854.263459] SLOW spr round 2 (radius: 5) [00:27:12 -43850.139702] SLOW spr round 3 (radius: 5) [00:29:02 -43848.089263] SLOW spr round 4 (radius: 5) [00:30:52 -43848.088471] SLOW spr round 5 (radius: 10) [00:32:52 -43841.381862] SLOW spr round 6 (radius: 5) [00:35:09 -43837.545387] SLOW spr round 7 (radius: 5) [00:37:12 -43836.247927] SLOW spr round 8 (radius: 5) [00:39:05 -43836.244640] SLOW spr round 9 (radius: 10) [00:41:00 -43836.244595] SLOW spr round 10 (radius: 15) [00:43:59 -43833.644108] SLOW spr round 11 (radius: 5) [00:46:20 -43832.960774] SLOW spr round 12 (radius: 5) [00:48:23 -43832.960643] SLOW spr round 13 (radius: 10) [00:50:22 -43832.960643] SLOW spr round 14 (radius: 15) [00:53:17 -43832.960642] SLOW spr round 15 (radius: 20) [00:57:19 -43831.929270] SLOW spr round 16 (radius: 5) [00:57:54] [worker #2] ML tree search #3, logLikelihood: -43842.319525 [00:59:42 -43831.929244] SLOW spr round 17 (radius: 10) [01:01:56 -43831.929243] SLOW spr round 18 (radius: 15) [01:04:45 -43831.929242] SLOW spr round 19 (radius: 20) [01:08:49 -43831.929242] SLOW spr round 20 (radius: 25) [01:13:42] [worker #3] ML tree search #4, logLikelihood: -43828.062296 [01:13:50 -43831.929242] Model parameter optimization (eps = 0.100000) [01:13:57] [worker #0] ML tree search #1, logLikelihood: -43831.796426 [01:13:57 -206200.157081] Initial branch length optimization [01:14:01 -171646.349370] Model parameter optimization (eps = 10.000000) [01:14:29] [worker #1] ML tree search #2, logLikelihood: -43844.797221 [01:14:34 -171186.634362] AUTODETECT spr round 1 (radius: 5) [01:16:50 -111305.815367] AUTODETECT spr round 2 (radius: 10) [01:19:14 -82948.588332] AUTODETECT spr round 3 (radius: 15) [01:22:01 -64444.685448] AUTODETECT spr round 4 (radius: 20) [01:25:21 -57447.383273] AUTODETECT spr round 5 (radius: 25) [01:29:04 -54181.029271] SPR radius for FAST iterations: 25 (autodetect) [01:29:04 -54181.029271] Model parameter optimization (eps = 3.000000) [01:29:32 -54087.898594] FAST spr round 1 (radius: 25) [01:31:47 -44729.400810] FAST spr round 2 (radius: 25) [01:33:34 -44002.850196] FAST spr round 3 (radius: 25) [01:35:16 -43918.998717] FAST spr round 4 (radius: 25) [01:36:54 -43876.897356] FAST spr round 5 (radius: 25) [01:38:24 -43873.677321] FAST spr round 6 (radius: 25) [01:39:51 -43873.677122] Model parameter optimization (eps = 1.000000) [01:40:07 -43853.299381] SLOW spr round 1 (radius: 5) [01:41:54 -43841.179035] SLOW spr round 2 (radius: 5) [01:43:44 -43840.913021] SLOW spr round 3 (radius: 5) [01:45:33 -43840.912238] SLOW spr round 4 (radius: 10) [01:47:28 -43840.912132] SLOW spr round 5 (radius: 15) [01:50:30 -43836.600189] SLOW spr round 6 (radius: 5) [01:52:54 -43836.285601] SLOW spr round 7 (radius: 5) [01:54:57 -43836.285409] SLOW spr round 8 (radius: 10) [01:56:56 -43836.285391] SLOW spr round 9 (radius: 15) [01:59:47 -43836.285378] SLOW spr round 10 (radius: 20) [02:03:55 -43836.175941] SLOW spr round 11 (radius: 5) [02:06:19 -43836.175923] SLOW spr round 12 (radius: 10) [02:08:32 -43836.175923] SLOW spr round 13 (radius: 15) [02:11:17 -43836.175923] SLOW spr round 14 (radius: 20) [02:15:27 -43836.175923] SLOW spr round 15 (radius: 25) [02:20:39 -43836.175923] Model parameter optimization (eps = 0.100000) [02:20:48] [worker #0] ML tree search #5, logLikelihood: -43836.046942 [02:20:48 -206821.685709] Initial branch length optimization [02:20:52 -172963.672876] Model parameter optimization (eps = 10.000000) [02:21:24 -172465.114990] AUTODETECT spr round 1 (radius: 5) [02:22:46] [worker #2] ML tree search #7, logLikelihood: -43857.912597 [02:23:37 -115963.132086] AUTODETECT spr round 2 (radius: 10) [02:26:11 -85318.608810] AUTODETECT spr round 3 (radius: 15) [02:29:06 -68353.907968] AUTODETECT spr round 4 (radius: 20) [02:32:06 -57636.278746] AUTODETECT spr round 5 (radius: 25) [02:35:23 -54738.650641] SPR radius for FAST iterations: 25 (autodetect) [02:35:23 -54738.650641] Model parameter optimization (eps = 3.000000) [02:35:45 -54629.555430] FAST spr round 1 (radius: 25) [02:38:11 -44424.190092] FAST spr round 2 (radius: 25) [02:39:13] [worker #1] ML tree search #6, logLikelihood: -43915.166644 [02:40:11 -43954.617456] FAST spr round 3 (radius: 25) [02:41:57 -43888.008110] FAST spr round 4 (radius: 25) [02:43:30 -43880.641700] FAST spr round 5 (radius: 25) [02:44:56 -43880.420515] FAST spr round 6 (radius: 25) [02:46:22 -43880.420247] Model parameter optimization (eps = 1.000000) [02:46:35 -43875.081084] SLOW spr round 1 (radius: 5) [02:48:24 -43845.894646] SLOW spr round 2 (radius: 5) [02:50:12 -43843.838270] SLOW spr round 3 (radius: 5) [02:52:02 -43843.402352] SLOW spr round 4 (radius: 5) [02:53:51 -43843.399074] SLOW spr round 5 (radius: 10) [02:55:50 -43836.523006] SLOW spr round 6 (radius: 5) [02:58:00] [worker #3] ML tree search #8, logLikelihood: -43835.667721 [02:58:07 -43834.691803] SLOW spr round 7 (radius: 5) [03:00:08 -43834.691471] SLOW spr round 8 (radius: 10) [03:02:09 -43834.647208] SLOW spr round 9 (radius: 15) [03:04:59 -43832.287400] SLOW spr round 10 (radius: 5) [03:07:20 -43832.287294] SLOW spr round 11 (radius: 10) [03:09:33 -43832.287249] SLOW spr round 12 (radius: 15) [03:12:17 -43832.287235] SLOW spr round 13 (radius: 20) [03:16:04 -43832.287224] SLOW spr round 14 (radius: 25) [03:20:39 -43832.055927] SLOW spr round 15 (radius: 5) [03:23:04 -43832.055911] SLOW spr round 16 (radius: 10) [03:25:21 -43832.055899] SLOW spr round 17 (radius: 15) [03:28:04 -43832.055889] SLOW spr round 18 (radius: 20) [03:31:52 -43830.739299] SLOW spr round 19 (radius: 5) [03:32:10] [worker #1] ML tree search #10, logLikelihood: -43843.354208 [03:34:15 -43830.739290] SLOW spr round 20 (radius: 10) [03:36:29 -43830.739280] SLOW spr round 21 (radius: 15) [03:39:13 -43830.739271] SLOW spr round 22 (radius: 20) [03:43:00 -43830.739262] SLOW spr round 23 (radius: 25) [03:47:34 -43830.739253] Model parameter optimization (eps = 0.100000) [03:47:44] [worker #0] ML tree search #9, logLikelihood: -43830.154474 [03:47:44 -208353.837540] Initial branch length optimization [03:47:48 -173764.791890] Model parameter optimization (eps = 10.000000) [03:48:07] [worker #2] ML tree search #11, logLikelihood: -43842.081805 [03:48:22 -173198.105533] AUTODETECT spr round 1 (radius: 5) [03:50:37 -113363.390422] AUTODETECT spr round 2 (radius: 10) [03:53:03 -83223.934125] AUTODETECT spr round 3 (radius: 15) [03:55:18] [worker #3] ML tree search #12, logLikelihood: -43857.551270 [03:55:48 -62869.525857] AUTODETECT spr round 4 (radius: 20) [03:58:39 -54857.072035] AUTODETECT spr round 5 (radius: 25) [04:02:00 -53458.260457] SPR radius for FAST iterations: 25 (autodetect) [04:02:00 -53458.260457] Model parameter optimization (eps = 3.000000) [04:02:19 -53361.563954] FAST spr round 1 (radius: 25) [04:04:41 -44569.277476] FAST spr round 2 (radius: 25) [04:06:30 -43935.138689] FAST spr round 3 (radius: 25) [04:08:12 -43895.215350] FAST spr round 4 (radius: 25) [04:09:42 -43895.213212] Model parameter optimization (eps = 1.000000) [04:09:58 -43880.819847] SLOW spr round 1 (radius: 5) [04:11:48 -43861.387075] SLOW spr round 2 (radius: 5) [04:13:40 -43858.061637] SLOW spr round 3 (radius: 5) [04:15:32 -43856.290987] SLOW spr round 4 (radius: 5) [04:17:24 -43855.734095] SLOW spr round 5 (radius: 5) [04:19:14 -43855.733821] SLOW spr round 6 (radius: 10) [04:21:13 -43855.103747] SLOW spr round 7 (radius: 5) [04:23:30 -43855.103656] SLOW spr round 8 (radius: 10) [04:25:39 -43855.086649] SLOW spr round 9 (radius: 15) [04:28:33 -43850.349512] SLOW spr round 10 (radius: 5) [04:30:57 -43849.274028] SLOW spr round 11 (radius: 5) [04:33:03 -43849.273980] SLOW spr round 12 (radius: 10) [04:35:04 -43849.273973] SLOW spr round 13 (radius: 15) [04:37:57 -43849.273894] SLOW spr round 14 (radius: 20) [04:42:08 -43849.273894] SLOW spr round 15 (radius: 25) [04:43:19] [worker #2] ML tree search #15, logLikelihood: -43824.866500 [04:47:20 -43849.273894] Model parameter optimization (eps = 0.100000) [04:47:29] [worker #0] ML tree search #13, logLikelihood: -43849.217995 [04:47:29 -207336.966868] Initial branch length optimization [04:47:33 -172624.813278] Model parameter optimization (eps = 10.000000) [04:48:07 -172103.976609] AUTODETECT spr round 1 (radius: 5) [04:50:23 -111679.237849] AUTODETECT spr round 2 (radius: 10) [04:52:46 -86695.338262] AUTODETECT spr round 3 (radius: 15) [04:55:32 -67089.793943] AUTODETECT spr round 4 (radius: 20) [04:57:13] [worker #1] ML tree search #14, logLikelihood: -43873.789770 [04:58:11] [worker #3] ML tree search #16, logLikelihood: -43847.270531 [04:58:27 -62153.218630] AUTODETECT spr round 5 (radius: 25) [05:01:58 -55595.855663] SPR radius for FAST iterations: 25 (autodetect) [05:01:58 -55595.855663] Model parameter optimization (eps = 3.000000) [05:02:27 -55450.045713] FAST spr round 1 (radius: 25) [05:04:49 -45197.748124] FAST spr round 2 (radius: 25) [05:06:38 -44005.742597] FAST spr round 3 (radius: 25) [05:08:21 -43895.537486] FAST spr round 4 (radius: 25) [05:09:56 -43874.502225] FAST spr round 5 (radius: 25) [05:11:24 -43871.829902] FAST spr round 6 (radius: 25) [05:12:50 -43870.755707] FAST spr round 7 (radius: 25) [05:14:14 -43870.755489] Model parameter optimization (eps = 1.000000) [05:14:29 -43858.064423] SLOW spr round 1 (radius: 5) [05:16:12 -43846.463398] SLOW spr round 2 (radius: 5) [05:17:59 -43843.010375] SLOW spr round 3 (radius: 5) [05:19:46 -43842.760243] SLOW spr round 4 (radius: 5) [05:21:35 -43842.759300] SLOW spr round 5 (radius: 10) [05:23:30 -43838.300342] SLOW spr round 6 (radius: 5) [05:25:46 -43838.294928] SLOW spr round 7 (radius: 10) [05:27:55 -43838.294772] SLOW spr round 8 (radius: 15) [05:30:42 -43838.294661] SLOW spr round 9 (radius: 20) [05:33:26] [worker #2] ML tree search #19, logLikelihood: -43831.034046 [05:34:20 -43838.294585] SLOW spr round 10 (radius: 25) [05:38:53 -43836.316272] SLOW spr round 11 (radius: 5) [05:41:19 -43836.314708] SLOW spr round 12 (radius: 10) [05:43:35 -43836.314643] SLOW spr round 13 (radius: 15) [05:46:18 -43836.314574] SLOW spr round 14 (radius: 20) [05:49:56 -43836.314513] SLOW spr round 15 (radius: 25) [05:53:49] [worker #3] ML tree search #20, logLikelihood: -43824.230764 [05:55:07 -43836.314452] Model parameter optimization (eps = 0.100000) [05:55:18] [worker #0] ML tree search #17, logLikelihood: -43836.103884 [06:13:49] [worker #1] ML tree search #18, logLikelihood: -43840.764498 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.282426,0.306209) (0.284990,0.555221) (0.280023,1.296068) (0.152560,2.571818) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -43824.230764 AIC score: 91642.461529 / AICc score: 8071654.461529 / BIC score: 98040.862883 Free parameters (model + branch lengths): 1997 WARNING: Number of free parameters (K=1997) is larger than alignment size (n=182). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 1 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UPS6/3_mltree/Q9UPS6.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UPS6/3_mltree/Q9UPS6.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UPS6/3_mltree/Q9UPS6.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UPS6/3_mltree/Q9UPS6.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UPS6/3_mltree/Q9UPS6.raxml.log Analysis started: 07-Jul-2021 08:22:59 / finished: 07-Jul-2021 14:36:49 Elapsed time: 22430.175 seconds Consumed energy: 1584.292 Wh (= 8 km in an electric car, or 40 km with an e-scooter!)