RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 18-Jul-2021 00:26:41 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UPP2/2_msa/Q9UPP2_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UPP2/3_mltree/Q9UPP2 --seed 2 --threads 2 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UPP2/2_msa/Q9UPP2_trimmed_msa.fasta
[00:00:00] Loaded alignment with 993 taxa and 85 sites

WARNING: Sequences tr_B4Q4G1_B4Q4G1_DROSI_7240 and tr_Q0E8N2_Q0E8N2_DROME_7227 are exactly identical!
WARNING: Sequences tr_B4QJM8_B4QJM8_DROSI_7240 and tr_Q9VP80_Q9VP80_DROME_7227 are exactly identical!
WARNING: Sequences tr_B4QJM8_B4QJM8_DROSI_7240 and tr_B4IYW8_B4IYW8_DROGR_7222 are exactly identical!
WARNING: Sequences tr_B4QJM8_B4QJM8_DROSI_7240 and tr_B4IAJ4_B4IAJ4_DROSE_7238 are exactly identical!
WARNING: Sequences tr_B4QJM8_B4QJM8_DROSI_7240 and tr_A0A0R3P813_A0A0R3P813_DROPS_46245 are exactly identical!
WARNING: Sequences tr_B4QJM8_B4QJM8_DROSI_7240 and tr_B4N3U9_B4N3U9_DROWI_7260 are exactly identical!
WARNING: Sequences tr_B4QJM8_B4QJM8_DROSI_7240 and tr_B3M6U5_B3M6U5_DROAN_7217 are exactly identical!
WARNING: Sequences tr_B4QJM8_B4QJM8_DROSI_7240 and tr_B4HDD7_B4HDD7_DROPE_7234 are exactly identical!
WARNING: Sequences tr_B4QJM8_B4QJM8_DROSI_7240 and tr_B4IQU5_B4IQU5_DROPE_7234 are exactly identical!
WARNING: Sequences tr_B4QJM8_B4QJM8_DROSI_7240 and tr_B4IR22_B4IR22_DROPE_7234 are exactly identical!
WARNING: Sequences tr_B4QJM8_B4QJM8_DROSI_7240 and tr_B4ISC6_B4ISC6_DROPE_7234 are exactly identical!
WARNING: Sequences tr_B4QJM8_B4QJM8_DROSI_7240 and tr_A0A0Q9WIZ7_A0A0Q9WIZ7_DROVI_7244 are exactly identical!
WARNING: Sequences tr_B4QJM8_B4QJM8_DROSI_7240 and tr_A0A1W4V8U4_A0A1W4V8U4_DROFC_30025 are exactly identical!
WARNING: Sequences tr_E9FUV7_E9FUV7_DAPPU_6669 and tr_A0A0P5ZDY9_A0A0P5ZDY9_9CRUS_35525 are exactly identical!
WARNING: Sequences tr_E2B031_E2B031_CAMFO_104421 and tr_A0A088ATU2_A0A088ATU2_APIME_7460 are exactly identical!
WARNING: Sequences tr_E2B031_E2B031_CAMFO_104421 and tr_E2BIZ5_E2BIZ5_HARSA_610380 are exactly identical!
WARNING: Sequences tr_E2B031_E2B031_CAMFO_104421 and tr_A0A026WLH2_A0A026WLH2_OOCBI_2015173 are exactly identical!
WARNING: Sequences tr_E2B031_E2B031_CAMFO_104421 and tr_A0A0L7QSB2_A0A0L7QSB2_9HYME_597456 are exactly identical!
WARNING: Sequences tr_E2B031_E2B031_CAMFO_104421 and tr_A0A154P080_A0A154P080_9HYME_178035 are exactly identical!
WARNING: Sequences tr_E2B031_E2B031_CAMFO_104421 and tr_A0A2A3E0N8_A0A2A3E0N8_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A0R4ITB4_A0A0R4ITB4_DANRE_7955 and tr_W5K8D6_W5K8D6_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_A0A0R4IUT7_A0A0R4IUT7_DANRE_7955 and tr_A0A3B3ILP9_A0A3B3ILP9_ORYLA_8090 are exactly identical!
WARNING: Sequences tr_A0A0R4IUT7_A0A0R4IUT7_DANRE_7955 and tr_H3D0D2_H3D0D2_TETNG_99883 are exactly identical!
WARNING: Sequences tr_A0A0R4IUT7_A0A0R4IUT7_DANRE_7955 and tr_A0A087XLF7_A0A087XLF7_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A0R4IUT7_A0A0R4IUT7_DANRE_7955 and tr_A0A2I4AXK1_A0A2I4AXK1_9TELE_52670 are exactly identical!
WARNING: Sequences tr_A0A0R4IUT7_A0A0R4IUT7_DANRE_7955 and tr_A0A2U9B2I7_A0A2U9B2I7_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_M3Z0R3_M3Z0R3_MUSPF_9669 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_G1NVD9_G1NVD9_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_G1KN21_G1KN21_ANOCA_28377 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_G1SF84_G1SF84_RABIT_9986 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_F1PUC7_F1PUC7_CANLF_9615 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_F6WI12_F6WI12_ORNAN_9258 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_F7FG08_F7FG08_MONDO_13616 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_F6YNZ3_F6YNZ3_HORSE_9796 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_I3J5F2_I3J5F2_ORENI_8128 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_H0Y0X9_H0Y0X9_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_A0A286XQF4_A0A286XQF4_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_K7G9I1_K7G9I1_PELSI_13735 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_G3UKQ0_G3UKQ0_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_G3WZN6_G3WZN6_SARHA_9305 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_A0A1B8XZL1_A0A1B8XZL1_XENTR_8364 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_F6S454_F6S454_XENTR_8364 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_A0A287BK53_A0A287BK53_PIG_9823 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_F1MYE9_F1MYE9_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_M3WJQ4_M3WJQ4_FELCA_9685 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_A0A091E1E3_A0A091E1E3_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_A0A151MZ71_A0A151MZ71_ALLMI_8496 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_A0A3Q0E512_A0A3Q0E512_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_A0A3Q0GLM0_A0A3Q0GLM0_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_A0A2U3ZB74_A0A2U3ZB74_ODORO_9708 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_A0A2U3YUF7_A0A2U3YUF7_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_A0A2Y9RV05_A0A2Y9RV05_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_A0A2Y9MGZ6_A0A2Y9MGZ6_DELLE_9749 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_A0A384CMX6_A0A384CMX6_URSMA_29073 are exactly identical!
WARNING: Sequences tr_E7EZE5_E7EZE5_DANRE_7955 and tr_A0A383ZW29_A0A383ZW29_BALAS_310752 are exactly identical!
WARNING: Sequences tr_Q6PW01_Q6PW01_DANRE_7955 and tr_A0A2D0SQ37_A0A2D0SQ37_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_Q6PW01_Q6PW01_DANRE_7955 and tr_W5UM42_W5UM42_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A1D5P3R1_A0A1D5P3R1_CHICK_9031 and tr_G1PR00_G1PR00_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_A0A1D5P3R1_A0A1D5P3R1_CHICK_9031 and tr_G3US24_G3US24_MELGA_9103 are exactly identical!
WARNING: Sequences tr_A0A1D5P3R1_A0A1D5P3R1_CHICK_9031 and tr_U3KCK3_U3KCK3_FICAL_59894 are exactly identical!
WARNING: Sequences tr_A0A1D5P3R1_A0A1D5P3R1_CHICK_9031 and tr_A0A0Q3MFA7_A0A0Q3MFA7_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_A0A1D5P3R1_A0A1D5P3R1_CHICK_9031 and tr_A0A091ETC2_A0A091ETC2_CORBR_85066 are exactly identical!
WARNING: Sequences tr_A0A1D5P3R1_A0A1D5P3R1_CHICK_9031 and tr_A0A093S8P2_A0A093S8P2_9PASS_328815 are exactly identical!
WARNING: Sequences tr_A0A1D5P3R1_A0A1D5P3R1_CHICK_9031 and tr_A0A091VQA5_A0A091VQA5_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A1D5P3R1_A0A1D5P3R1_CHICK_9031 and tr_A0A087QX99_A0A087QX99_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A1D5P3R1_A0A1D5P3R1_CHICK_9031 and tr_A0A093HXA3_A0A093HXA3_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A0A1D5P3R1_A0A1D5P3R1_CHICK_9031 and tr_A0A091FZW0_A0A091FZW0_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A1D5P3R1_A0A1D5P3R1_CHICK_9031 and tr_A0A0A0ABD5_A0A0A0ABD5_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A1D5P3R1_A0A1D5P3R1_CHICK_9031 and tr_A0A2I0LIM9_A0A2I0LIM9_COLLI_8932 are exactly identical!
WARNING: Sequences tr_A0A1D5P3R1_A0A1D5P3R1_CHICK_9031 and tr_A0A093GF11_A0A093GF11_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_A0A1D5P3R1_A0A1D5P3R1_CHICK_9031 and tr_A0A091HZZ3_A0A091HZZ3_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A1D5P3R1_A0A1D5P3R1_CHICK_9031 and tr_A0A1V4KWS4_A0A1V4KWS4_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A1D5P3R1_A0A1D5P3R1_CHICK_9031 and tr_A0A218ULK5_A0A218ULK5_9PASE_299123 are exactly identical!
WARNING: Sequences tr_A0A1D5P3R1_A0A1D5P3R1_CHICK_9031 and tr_A0A226PNJ4_A0A226PNJ4_COLVI_9014 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_H9GJJ4_H9GJJ4_ANOCA_28377 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_F6RQA4_F6RQA4_ORNAN_9258 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_F6ZA19_F6ZA19_MONDO_13616 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_G3WHZ2_G3WHZ2_SARHA_9305 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_H0ZEX0_H0ZEX0_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_U3KHT8_U3KHT8_FICAL_59894 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_U3I799_U3I799_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_A0A151N1W1_A0A151N1W1_ALLMI_8496 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_A0A0Q3X395_A0A0Q3X395_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_A0A091EPZ8_A0A091EPZ8_CORBR_85066 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_A0A091ITQ0_A0A091ITQ0_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_A0A093Q5X5_A0A093Q5X5_9PASS_328815 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_A0A091WDT0_A0A091WDT0_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_A0A087RFS5_A0A087RFS5_APTFO_9233 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_A0A093HVJ6_A0A093HVJ6_STRCA_441894 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_A0A091W5H7_A0A091W5H7_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_A0A099ZQA1_A0A099ZQA1_TINGU_94827 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_A0A091GF23_A0A091GF23_9AVES_55661 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_A0A0A0A0Q8_A0A0A0A0Q8_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_A0A2I0M0T9_A0A2I0M0T9_COLLI_8932 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_A0A093I495_A0A093I495_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_A0A1U7S5D9_A0A1U7S5D9_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_A0A1V4KS52_A0A1V4KS52_PATFA_372326 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_A0A218V7G8_A0A218V7G8_9PASE_299123 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_A0A226NJU9_A0A226NJU9_CALSU_9009 are exactly identical!
WARNING: Sequences tr_E1C5T7_E1C5T7_CHICK_9031 and tr_A0A226PQX0_A0A226PQX0_COLVI_9014 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_G1NKY8_G1NKY8_MELGA_9103 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_H0ZQZ2_H0ZQZ2_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_U3J5U2_U3J5U2_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_W5NJN8_W5NJN8_LEPOC_7918 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_A0A151NID8_A0A151NID8_ALLMI_8496 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_A0A0Q3TMZ3_A0A0Q3TMZ3_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_A0A091EB76_A0A091EB76_CORBR_85066 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_A0A091JDX2_A0A091JDX2_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_A0A091VW87_A0A091VW87_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_A0A087RJE5_A0A087RJE5_APTFO_9233 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_A0A093HY39_A0A093HY39_STRCA_441894 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_A0A091W978_A0A091W978_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_A0A099YZH2_A0A099YZH2_TINGU_94827 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_A0A091FT92_A0A091FT92_9AVES_55661 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_A0A2I0MKX8_A0A2I0MKX8_COLLI_8932 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_A0A093IAK6_A0A093IAK6_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_A0A3Q0GZE3_A0A3Q0GZE3_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_A0A1V4K894_A0A1V4K894_PATFA_372326 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_A0A218V920_A0A218V920_9PASE_299123 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_A0A226MX28_A0A226MX28_CALSU_9009 are exactly identical!
WARNING: Sequences tr_F1NN93_F1NN93_CHICK_9031 and tr_A0A226PLY3_A0A226PLY3_COLVI_9014 are exactly identical!
WARNING: Sequences tr_F1P1C3_F1P1C3_CHICK_9031 and tr_G5BAI1_G5BAI1_HETGA_10181 are exactly identical!
WARNING: Sequences tr_F1P1C3_F1P1C3_CHICK_9031 and tr_L5K863_L5K863_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_F1P1C3_F1P1C3_CHICK_9031 and tr_U3J0W2_U3J0W2_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_F1P1C3_F1P1C3_CHICK_9031 and tr_A0A0Q3U0U5_A0A0Q3U0U5_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_F1P1C3_F1P1C3_CHICK_9031 and tr_A0A091IZJ4_A0A091IZJ4_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_F1P1C3_F1P1C3_CHICK_9031 and tr_A0A093Q832_A0A093Q832_9PASS_328815 are exactly identical!
WARNING: Sequences tr_F1P1C3_F1P1C3_CHICK_9031 and tr_A0A091V1J7_A0A091V1J7_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_F1P1C3_F1P1C3_CHICK_9031 and tr_A0A087R9Q8_A0A087R9Q8_APTFO_9233 are exactly identical!
WARNING: Sequences tr_F1P1C3_F1P1C3_CHICK_9031 and tr_A0A091WKT3_A0A091WKT3_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_F1P1C3_F1P1C3_CHICK_9031 and tr_A0A099Z0Y4_A0A099Z0Y4_TINGU_94827 are exactly identical!
WARNING: Sequences tr_F1P1C3_F1P1C3_CHICK_9031 and tr_A0A0A0AUH9_A0A0A0AUH9_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_F1P1C3_F1P1C3_CHICK_9031 and tr_A0A2I0LTZ4_A0A2I0LTZ4_COLLI_8932 are exactly identical!
WARNING: Sequences tr_F1P1C3_F1P1C3_CHICK_9031 and tr_A0A093GBD8_A0A093GBD8_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_F1P1C3_F1P1C3_CHICK_9031 and tr_A0A091I885_A0A091I885_CALAN_9244 are exactly identical!
WARNING: Sequences tr_F1P1C3_F1P1C3_CHICK_9031 and tr_A0A1V4JIE6_A0A1V4JIE6_PATFA_372326 are exactly identical!
WARNING: Sequences tr_F1P1C3_F1P1C3_CHICK_9031 and tr_A0A226NCU6_A0A226NCU6_CALSU_9009 are exactly identical!
WARNING: Sequences tr_F1P1C3_F1P1C3_CHICK_9031 and tr_A0A226PSI6_A0A226PSI6_COLVI_9014 are exactly identical!
WARNING: Sequences sp_O08967_CYH3_MOUSE_10090 and tr_G3GVB3_G3GVB3_CRIGR_10029 are exactly identical!
WARNING: Sequences sp_O08967_CYH3_MOUSE_10090 and tr_F6QKK1_F6QKK1_HORSE_9796 are exactly identical!
WARNING: Sequences sp_O08967_CYH3_MOUSE_10090 and sp_P97696_CYH3_RAT_10116 are exactly identical!
WARNING: Sequences sp_O08967_CYH3_MOUSE_10090 and tr_A0A287DE83_A0A287DE83_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_O08967_CYH3_MOUSE_10090 and tr_H0WNE8_H0WNE8_OTOGA_30611 are exactly identical!
WARNING: Sequences sp_O08967_CYH3_MOUSE_10090 and tr_G3T6C7_G3T6C7_LOXAF_9785 are exactly identical!
WARNING: Sequences sp_O08967_CYH3_MOUSE_10090 and tr_A0A3Q0DJX8_A0A3Q0DJX8_TARSY_1868482 are exactly identical!
WARNING: Sequences sp_O08967_CYH3_MOUSE_10090 and tr_A0A1U7R5Q6_A0A1U7R5Q6_MESAU_10036 are exactly identical!
WARNING: Sequences sp_O08967_CYH3_MOUSE_10090 and tr_A0A2Y9RHQ7_A0A2Y9RHQ7_TRIMA_127582 are exactly identical!
WARNING: Sequences sp_P63034_CYH2_MOUSE_10090 and sp_P63035_CYH2_RAT_10116 are exactly identical!
WARNING: Sequences sp_P63034_CYH2_MOUSE_10090 and tr_A0A1U7RD87_A0A1U7RD87_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q3TES0_IQEC3_MOUSE_10090 and tr_G3HQ76_G3HQ76_CRIGR_10029 are exactly identical!
WARNING: Sequences sp_Q3TES0_IQEC3_MOUSE_10090 and tr_E2QWT6_E2QWT6_CANLF_9615 are exactly identical!
WARNING: Sequences sp_Q3TES0_IQEC3_MOUSE_10090 and tr_F6QVV0_F6QVV0_MONDO_13616 are exactly identical!
WARNING: Sequences sp_Q3TES0_IQEC3_MOUSE_10090 and sp_Q76M68_IQEC3_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q3TES0_IQEC3_MOUSE_10090 and tr_G3WR11_G3WR11_SARHA_9305 are exactly identical!
WARNING: Sequences sp_Q3TES0_IQEC3_MOUSE_10090 and tr_A0A1U7Q3L3_A0A1U7Q3L3_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_M3YE90_M3YE90_MUSPF_9669 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_G1S1E2_G1S1E2_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_G1P3S0_G1P3S0_MYOLU_59463 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_G3H7U4_G3H7U4_CRIGR_10029 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_G3QXI3_G3QXI3_GORGO_9595 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_G1U774_G1U774_RABIT_9986 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_E2QZZ5_E2QZZ5_CANLF_9615 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_F6XU14_F6XU14_HORSE_9796 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_W5PG04_W5PG04_SHEEP_9940 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A0G2JZX5_A0A0G2JZX5_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A287DF26_A0A287DF26_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_H0WGP9_H0WGP9_OTOGA_30611 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_H0VDQ4_H0VDQ4_CAVPO_10141 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and sp_Q5JU85_IQEC2_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A1D5QE91_A0A1D5QE91_MACMU_9544 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_G5BAY8_G5BAY8_HETGA_10181 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_G3U1K4_G3U1K4_LOXAF_9785 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_F7I873_F7I873_CALJA_9483 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_F1RUI3_F1RUI3_PIG_9823 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_G1LES7_G1LES7_AILME_9646 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_G3MZJ7_G3MZJ7_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_L5JUY4_L5JUY4_PTEAL_9402 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A337SWN5_A0A337SWN5_FELCA_9685 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A096MR96_A0A096MR96_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A0D9RJG7_A0A0D9RJG7_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A1S3WLQ4_A0A1S3WLQ4_ERIEU_9365 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A1S3GSW9_A0A1S3GSW9_DIPOR_10020 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A3Q0DPP6_A0A3Q0DPP6_TARSY_1868482 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A3Q0CCN6_A0A3Q0CCN6_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A2K5NYF2_A0A2K5NYF2_CERAT_9531 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A2K6E2C2_A0A2K6E2C2_MACNE_9545 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A2K5XWY6_A0A2K5XWY6_MANLE_9568 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A2R9CBG8_A0A2R9CBG8_PANPA_9597 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A2U4C160_A0A2U4C160_TURTR_9739 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A2U3ZNG8_A0A2U3ZNG8_ODORO_9708 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A2U3Z0D3_A0A2U3Z0D3_LEPWE_9713 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A2Y9E8D2_A0A2Y9E8D2_TRIMA_127582 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A2Y9IH11_A0A2Y9IH11_ENHLU_391180 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A2Y9MY33_A0A2Y9MY33_DELLE_9749 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A2Y9F6P3_A0A2Y9F6P3_PHYCD_9755 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A384D5X0_A0A384D5X0_URSMA_29073 are exactly identical!
WARNING: Sequences sp_Q5DU25_IQEC2_MOUSE_10090 and tr_A0A384AA58_A0A384AA58_BALAS_310752 are exactly identical!
WARNING: Sequences sp_Q8R0S2_IQEC1_MOUSE_10090 and tr_G3GS04_G3GS04_CRIGR_10029 are exactly identical!
WARNING: Sequences sp_Q8R0S2_IQEC1_MOUSE_10090 and tr_A0A0G2JUG7_A0A0G2JUG7_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q8R0S2_IQEC1_MOUSE_10090 and tr_A0A1U8C214_A0A1U8C214_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q9QX11_CYH1_MOUSE_10090 and sp_P97694_CYH1_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q9QX11_CYH1_MOUSE_10090 and tr_A0A2U3ZWZ3_A0A2U3ZWZ3_ODORO_9708 are exactly identical!
WARNING: Sequences tr_W5JR48_W5JR48_ANODA_43151 and tr_Q7PPK6_Q7PPK6_ANOGA_7165 are exactly identical!
WARNING: Sequences tr_W5JR48_W5JR48_ANODA_43151 and tr_Q17HL6_Q17HL6_AEDAE_7159 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A2I3GQR7_A0A2I3GQR7_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A2I2YN83_A0A2I2YN83_GORGO_9595 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_H2NZG5_H2NZG5_PONAB_9601 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_F1P6K1_F1P6K1_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_W5PQD9_W5PQD9_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_I3LWA2_I3LWA2_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_H0WSM7_H0WSM7_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A286XK88_A0A286XK88_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and sp_Q99418_CYH2_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_F7GGR0_F7GGR0_MACMU_9544 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_G5B887_G5B887_HETGA_10181 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_G3TY44_G3TY44_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_F7GMN9_F7GMN9_CALJA_9483 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_F1RL83_F1RL83_PIG_9823 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_G1M8W8_G1M8W8_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and sp_Q2KI41_CYH2_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A337SPJ2_A0A337SPJ2_FELCA_9685 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A2I3MG92_A0A2I3MG92_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A091D715_A0A091D715_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A0D9S2W3_A0A0D9S2W3_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A1S3AKC2_A0A1S3AKC2_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A1S3G3T7_A0A1S3G3T7_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A3Q0DW12_A0A3Q0DW12_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A2K5L818_A0A2K5L818_CERAT_9531 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A2K6DW18_A0A2K6DW18_MACNE_9545 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A2K5YTE2_A0A2K5YTE2_MANLE_9568 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A2R9C4P9_A0A2R9C4P9_PANPA_9597 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A2U3WZN0_A0A2U3WZN0_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A2U3YNX3_A0A2U3YNX3_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A2Y9DV91_A0A2Y9DV91_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A2Y9LE19_A0A2Y9LE19_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A2Y9PE76_A0A2Y9PE76_DELLE_9749 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A2Y9F160_A0A2Y9F160_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_M3XY13_M3XY13_MUSPF_9669 and tr_A0A384BKT8_A0A384BKT8_URSMA_29073 are exactly identical!
WARNING: Sequences tr_M3YMB8_M3YMB8_MUSPF_9669 and tr_W5P032_W5P032_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_M3YMB8_M3YMB8_MUSPF_9669 and tr_F1MCV3_F1MCV3_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_M3YMB8_M3YMB8_MUSPF_9669 and tr_A0A2U4BMD8_A0A2U4BMD8_TURTR_9739 are exactly identical!
WARNING: Sequences tr_M3YMB8_M3YMB8_MUSPF_9669 and tr_A0A2Y9L6V4_A0A2Y9L6V4_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YMB8_M3YMB8_MUSPF_9669 and tr_A0A2Y9PPC2_A0A2Y9PPC2_DELLE_9749 are exactly identical!
WARNING: Sequences tr_M3YMB8_M3YMB8_MUSPF_9669 and tr_A0A2Y9T6N2_A0A2Y9T6N2_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_M3YMB8_M3YMB8_MUSPF_9669 and tr_A0A384AES6_A0A384AES6_BALAS_310752 are exactly identical!
WARNING: Sequences tr_M3YYR5_M3YYR5_MUSPF_9669 and tr_L7N162_L7N162_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_M3YYR5_M3YYR5_MUSPF_9669 and tr_J9PA23_J9PA23_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3YYR5_M3YYR5_MUSPF_9669 and tr_A0A286ZZ53_A0A286ZZ53_PIG_9823 are exactly identical!
WARNING: Sequences tr_M3YYR5_M3YYR5_MUSPF_9669 and tr_A0A337SQI6_A0A337SQI6_FELCA_9685 are exactly identical!
WARNING: Sequences tr_M3YYR5_M3YYR5_MUSPF_9669 and tr_A0A2U3VHS5_A0A2U3VHS5_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3YYR5_M3YYR5_MUSPF_9669 and tr_A0A2Y9J6Y4_A0A2Y9J6Y4_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_G1QMG8_G1QMG8_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_G3S130_G3S130_GORGO_9595 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_H2NG21_H2NG21_PONAB_9601 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_G1SMP0_G1SMP0_RABIT_9986 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_A0A2I3SW02_A0A2I3SW02_PANTR_9598 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_I3N5U0_I3N5U0_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_H0WG56_H0WG56_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_H0VPE8_H0VPE8_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and sp_Q9UPP2_IQEC3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_F7FU66_F7FU66_MACMU_9544 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_G5BWQ4_G5BWQ4_HETGA_10181 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_G3UID8_G3UID8_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_F7GSP2_F7GSP2_CALJA_9483 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_G1LDD3_G1LDD3_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_A0A2I2U994_A0A2I2U994_FELCA_9685 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_A0A096MQ10_A0A096MQ10_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_A0A2K5LYZ2_A0A2K5LYZ2_CERAT_9531 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_A0A2K6CGS9_A0A2K6CGS9_MACNE_9545 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_A0A2K5ZQ36_A0A2K5ZQ36_MANLE_9568 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_A0A2R9BE08_A0A2R9BE08_PANPA_9597 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_A0A2U3WRS2_A0A2U3WRS2_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_A0A2Y9DVD0_A0A2Y9DVD0_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_A0A2Y9L9N2_A0A2Y9L9N2_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3Z2V4_M3Z2V4_MUSPF_9669 and tr_A0A384D8L4_A0A384D8L4_URSMA_29073 are exactly identical!
WARNING: Sequences tr_A0A3B3H2U6_A0A3B3H2U6_ORYLA_8090 and tr_A0A3B5PVN1_A0A3B5PVN1_XIPMA_8083 are exactly identical!
WARNING: Sequences tr_A0A3B3H2U6_A0A3B3H2U6_ORYLA_8090 and tr_H2T1M6_H2T1M6_TAKRU_31033 are exactly identical!
WARNING: Sequences tr_A0A3B3H2U6_A0A3B3H2U6_ORYLA_8090 and tr_H3DKQ2_H3DKQ2_TETNG_99883 are exactly identical!
WARNING: Sequences tr_A0A3B3H2U6_A0A3B3H2U6_ORYLA_8090 and tr_A0A087YD38_A0A087YD38_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B3HBP6_A0A3B3HBP6_ORYLA_8090 and tr_G3PCR5_G3PCR5_GASAC_69293 are exactly identical!
WARNING: Sequences tr_H2LYC4_H2LYC4_ORYLA_8090 and tr_M3ZNX4_M3ZNX4_XIPMA_8083 are exactly identical!
WARNING: Sequences tr_H2LYC4_H2LYC4_ORYLA_8090 and tr_I3KCW6_I3KCW6_ORENI_8128 are exactly identical!
WARNING: Sequences tr_H2LYC4_H2LYC4_ORYLA_8090 and tr_H2UP90_H2UP90_TAKRU_31033 are exactly identical!
WARNING: Sequences tr_H2LYC4_H2LYC4_ORYLA_8090 and tr_G3PI43_G3PI43_GASAC_69293 are exactly identical!
WARNING: Sequences tr_H2LYC4_H2LYC4_ORYLA_8090 and tr_A0A087YM63_A0A087YM63_POEFO_48698 are exactly identical!
WARNING: Sequences tr_B4JE29_B4JE29_DROGR_7222 and tr_A0A0Q9WG84_A0A0Q9WG84_DROVI_7244 are exactly identical!
WARNING: Sequences tr_B4JE29_B4JE29_DROGR_7222 and tr_A0A0Q9XGC9_A0A0Q9XGC9_DROMO_7230 are exactly identical!
WARNING: Sequences tr_B4JE29_B4JE29_DROGR_7222 and tr_A0A1W4VEV5_A0A1W4VEV5_DROFC_30025 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_G3H3E8_G3H3E8_CRIGR_10029 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_G3S1P5_G3S1P5_GORGO_9595 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_H2NUW9_H2NUW9_PONAB_9601 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_F1PKP6_F1PKP6_CANLF_9615 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_A0A2I3SU11_A0A2I3SU11_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_H0WV67_H0WV67_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and sp_Q15438_CYH1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_A0A1D5QFG0_A0A1D5QFG0_MACMU_9544 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_G3WYB0_G3WYB0_SARHA_9305 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_A0A2R8PGP4_A0A2R8PGP4_CALJA_9483 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_A0A287BMZ7_A0A287BMZ7_PIG_9823 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_G1M685_G1M685_AILME_9646 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_G7PT16_G7PT16_MACFA_9541 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_A0A2I3MVV0_A0A2I3MVV0_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_A0A0D9S481_A0A0D9S481_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_A0A1S3WRX7_A0A1S3WRX7_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_A0A1S3GYW7_A0A1S3GYW7_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_A0A1U8BZ63_A0A1U8BZ63_MESAU_10036 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_A0A2K5MYP4_A0A2K5MYP4_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_A0A2K6EBL6_A0A2K6EBL6_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_A0A2K5YSH0_A0A2K5YSH0_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_A0A2R9BSN1_A0A2R9BSN1_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_A0A2Y9R055_A0A2Y9R055_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_A0A2I3GEG9_A0A2I3GEG9_NOMLE_61853 and tr_A0A384CB04_A0A384CB04_URSMA_29073 are exactly identical!
WARNING: Sequences tr_G1QKE0_G1QKE0_NOMLE_61853 and tr_A0A2I2ZI55_A0A2I2ZI55_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1QKE0_G1QKE0_NOMLE_61853 and tr_H2PLF5_H2PLF5_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1QKE0_G1QKE0_NOMLE_61853 and tr_H2QU58_H2QU58_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1QKE0_G1QKE0_NOMLE_61853 and sp_O43739_CYH3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1QKE0_G1QKE0_NOMLE_61853 and tr_I0FH74_I0FH74_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G1QKE0_G1QKE0_NOMLE_61853 and tr_U3ELQ7_U3ELQ7_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G1QKE0_G1QKE0_NOMLE_61853 and tr_G8F3K7_G8F3K7_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G1QKE0_G1QKE0_NOMLE_61853 and tr_A0A096NQ83_A0A096NQ83_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1QKE0_G1QKE0_NOMLE_61853 and tr_A0A0D9RYP9_A0A0D9RYP9_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1QKE0_G1QKE0_NOMLE_61853 and tr_A0A2K5KTX7_A0A2K5KTX7_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1QKE0_G1QKE0_NOMLE_61853 and tr_A0A2K6BVL9_A0A2K6BVL9_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1QKE0_G1QKE0_NOMLE_61853 and tr_A0A2K6A211_A0A2K6A211_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1QKE0_G1QKE0_NOMLE_61853 and tr_A0A2R9AU17_A0A2R9AU17_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1QXY8_G1QXY8_NOMLE_61853 and tr_G3QFC6_G3QFC6_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1QXY8_G1QXY8_NOMLE_61853 and tr_A0A2I3RN99_A0A2I3RN99_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1QXY8_G1QXY8_NOMLE_61853 and sp_Q6DN90_IQEC1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1QXY8_G1QXY8_NOMLE_61853 and tr_F7B954_F7B954_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G1QXY8_G1QXY8_NOMLE_61853 and tr_H0Z0C4_H0Z0C4_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_G1QXY8_G1QXY8_NOMLE_61853 and tr_G7NYG5_G7NYG5_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G1QXY8_G1QXY8_NOMLE_61853 and tr_U3JB84_U3JB84_FICAL_59894 are exactly identical!
WARNING: Sequences tr_G1QXY8_G1QXY8_NOMLE_61853 and tr_A0A0D9RAV2_A0A0D9RAV2_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1QXY8_G1QXY8_NOMLE_61853 and tr_A0A091EWF9_A0A091EWF9_CORBR_85066 are exactly identical!
WARNING: Sequences tr_G1QXY8_G1QXY8_NOMLE_61853 and tr_A0A091GH38_A0A091GH38_9AVES_55661 are exactly identical!
WARNING: Sequences tr_G1QXY8_G1QXY8_NOMLE_61853 and tr_A0A218UCK7_A0A218UCK7_9PASE_299123 are exactly identical!
WARNING: Sequences tr_G1QXY8_G1QXY8_NOMLE_61853 and tr_A0A2K5MVQ4_A0A2K5MVQ4_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1QXY8_G1QXY8_NOMLE_61853 and tr_A0A2K6DSD5_A0A2K6DSD5_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1QXY8_G1QXY8_NOMLE_61853 and tr_A0A2K5Z5H5_A0A2K5Z5H5_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1QXY8_G1QXY8_NOMLE_61853 and tr_A0A2R9BER0_A0A2R9BER0_PANPA_9597 are exactly identical!
WARNING: Sequences tr_D8QTL1_D8QTL1_SELML_88036 and tr_D8SBR4_D8SBR4_SELML_88036 are exactly identical!
WARNING: Sequences tr_D8RRX5_D8RRX5_SELML_88036 and tr_D8SJM0_D8SJM0_SELML_88036 are exactly identical!
WARNING: Sequences tr_H2P9A8_H2P9A8_PONAB_9601 and tr_F6ZM78_F6ZM78_CALJA_9483 are exactly identical!
WARNING: Sequences tr_H2P9A8_H2P9A8_PONAB_9601 and tr_A0A2Y9L131_A0A2Y9L131_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_G1K867_G1K867_ANOCA_28377 and tr_K7GJE1_K7GJE1_PELSI_13735 are exactly identical!
WARNING: Sequences tr_G1K867_G1K867_ANOCA_28377 and tr_G3Q880_G3Q880_GASAC_69293 are exactly identical!
WARNING: Sequences tr_G1K867_G1K867_ANOCA_28377 and tr_U3JMI7_U3JMI7_FICAL_59894 are exactly identical!
WARNING: Sequences tr_G1K867_G1K867_ANOCA_28377 and tr_W5KDX4_W5KDX4_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_G1K867_G1K867_ANOCA_28377 and tr_A0A0P7V1L7_A0A0P7V1L7_9TELE_113540 are exactly identical!
WARNING: Sequences tr_G1K867_G1K867_ANOCA_28377 and tr_A0A091I4H0_A0A091I4H0_CALAN_9244 are exactly identical!
WARNING: Sequences tr_G1K867_G1K867_ANOCA_28377 and tr_A0A1S3SI95_A0A1S3SI95_SALSA_8030 are exactly identical!
WARNING: Sequences tr_G1K867_G1K867_ANOCA_28377 and tr_A0A2D0T2T5_A0A2D0T2T5_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_G1K867_G1K867_ANOCA_28377 and tr_A0A2D0T2T8_A0A2D0T2T8_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_G1K867_G1K867_ANOCA_28377 and tr_A0A2D0T2U4_A0A2D0T2U4_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_H9GNJ8_H9GNJ8_ANOCA_28377 and tr_A0A151LYA3_A0A151LYA3_ALLMI_8496 are exactly identical!
WARNING: Sequences tr_H9GNJ8_H9GNJ8_ANOCA_28377 and tr_A0A3Q0G2M2_A0A3Q0G2M2_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_G1SW94_G1SW94_RABIT_9986 and tr_A0A0P7URX8_A0A0P7URX8_9TELE_113540 are exactly identical!
WARNING: Sequences tr_G1SW94_G1SW94_RABIT_9986 and tr_A0A151MUP4_A0A151MUP4_ALLMI_8496 are exactly identical!
WARNING: Sequences tr_G1SW94_G1SW94_RABIT_9986 and tr_A0A3Q0FPE9_A0A3Q0FPE9_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_Q94287_Q94287_CAEEL_6239 and tr_E3M5U5_E3M5U5_CAERE_31234 are exactly identical!
WARNING: Sequences tr_Q94287_Q94287_CAEEL_6239 and tr_E3NRK0_E3NRK0_CAERE_31234 are exactly identical!
WARNING: Sequences tr_Q94287_Q94287_CAEEL_6239 and tr_A0A261A7K8_A0A261A7K8_9PELO_1503980 are exactly identical!
WARNING: Sequences tr_Q94287_Q94287_CAEEL_6239 and tr_A0A2G5U930_A0A2G5U930_9PELO_1611254 are exactly identical!
WARNING: Sequences tr_F6XTP4_F6XTP4_MONDO_13616 and tr_G3VRN9_G3VRN9_SARHA_9305 are exactly identical!
WARNING: Sequences tr_W5PPX5_W5PPX5_SHEEP_9940 and tr_F1SK81_F1SK81_PIG_9823 are exactly identical!
WARNING: Sequences tr_W5PPX5_W5PPX5_SHEEP_9940 and tr_G5E5L9_G5E5L9_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_F9F376_F9F376_FUSOF_660025 and tr_A0A0D2Y5B0_A0A0D2Y5B0_FUSO4_426428 are exactly identical!
WARNING: Sequences tr_F9F376_F9F376_FUSOF_660025 and tr_N4UIV6_N4UIV6_FUSC1_1229664 are exactly identical!
WARNING: Sequences tr_F9F376_F9F376_FUSOF_660025 and tr_X0CGD7_X0CGD7_FUSOX_1089458 are exactly identical!
WARNING: Sequences tr_F9F376_F9F376_FUSOF_660025 and tr_A0A1B8AYB7_A0A1B8AYB7_FUSPO_36050 are exactly identical!
WARNING: Sequences tr_F9F376_F9F376_FUSOF_660025 and tr_A0A2H3TLV2_A0A2H3TLV2_FUSOX_5507 are exactly identical!
WARNING: Sequences tr_F9F376_F9F376_FUSOF_660025 and tr_A0A2H3GQW0_A0A2H3GQW0_FUSOX_327505 are exactly identical!
WARNING: Sequences tr_F9F376_F9F376_FUSOF_660025 and tr_A0A2K0WMQ2_A0A2K0WMQ2_GIBNY_42673 are exactly identical!
WARNING: Sequences tr_A0A3B5QSI0_A0A3B5QSI0_XIPMA_8083 and tr_A0A096MI71_A0A096MI71_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B5R9Y6_A0A3B5R9Y6_XIPMA_8083 and tr_H2TWB9_H2TWB9_TAKRU_31033 are exactly identical!
WARNING: Sequences tr_A0A3B5R9Y6_A0A3B5R9Y6_XIPMA_8083 and tr_H3CWN0_H3CWN0_TETNG_99883 are exactly identical!
WARNING: Sequences tr_A0A3B5R9Y6_A0A3B5R9Y6_XIPMA_8083 and tr_A0A087XNU5_A0A087XNU5_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B5RBV9_A0A3B5RBV9_XIPMA_8083 and tr_A0A087XW70_A0A087XW70_POEFO_48698 are exactly identical!
WARNING: Sequences tr_M3ZG07_M3ZG07_XIPMA_8083 and tr_I3KKI3_I3KKI3_ORENI_8128 are exactly identical!
WARNING: Sequences tr_M3ZG07_M3ZG07_XIPMA_8083 and tr_I3KV34_I3KV34_ORENI_8128 are exactly identical!
WARNING: Sequences tr_M3ZG07_M3ZG07_XIPMA_8083 and tr_H2UWW7_H2UWW7_TAKRU_31033 are exactly identical!
WARNING: Sequences tr_M3ZG07_M3ZG07_XIPMA_8083 and tr_H2V157_H2V157_TAKRU_31033 are exactly identical!
WARNING: Sequences tr_M3ZG07_M3ZG07_XIPMA_8083 and tr_H3C3J4_H3C3J4_TETNG_99883 are exactly identical!
WARNING: Sequences tr_M3ZG07_M3ZG07_XIPMA_8083 and tr_H3CFL1_H3CFL1_TETNG_99883 are exactly identical!
WARNING: Sequences tr_M3ZG07_M3ZG07_XIPMA_8083 and tr_A0A087XH38_A0A087XH38_POEFO_48698 are exactly identical!
WARNING: Sequences tr_M3ZG07_M3ZG07_XIPMA_8083 and tr_A0A2I4BCX0_A0A2I4BCX0_9TELE_52670 are exactly identical!
WARNING: Sequences tr_M3ZG07_M3ZG07_XIPMA_8083 and tr_A0A2U9CND1_A0A2U9CND1_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_M3ZG07_M3ZG07_XIPMA_8083 and tr_A0A2U9CQF6_A0A2U9CQF6_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_M4A3A6_M4A3A6_XIPMA_8083 and tr_A0A087XJB0_A0A087XJB0_POEFO_48698 are exactly identical!
WARNING: Sequences tr_M4A3A6_M4A3A6_XIPMA_8083 and tr_A0A2I4CXX4_A0A2I4CXX4_9TELE_52670 are exactly identical!
WARNING: Sequences tr_M4AD44_M4AD44_XIPMA_8083 and tr_A0A087XRS5_A0A087XRS5_POEFO_48698 are exactly identical!
WARNING: Sequences tr_K4A4R3_K4A4R3_SETIT_4555 and tr_J3LLY2_J3LLY2_ORYBR_4533 are exactly identical!
WARNING: Sequences tr_K4A4R3_K4A4R3_SETIT_4555 and tr_A0A0E0GJP3_A0A0E0GJP3_ORYNI_4536 are exactly identical!
WARNING: Sequences tr_K4A4R3_K4A4R3_SETIT_4555 and tr_B8AK12_B8AK12_ORYSI_39946 are exactly identical!
WARNING: Sequences tr_K4A4R3_K4A4R3_SETIT_4555 and tr_I1P9F7_I1P9F7_ORYGL_4538 are exactly identical!
WARNING: Sequences tr_K4A4R3_K4A4R3_SETIT_4555 and tr_A0A0E0CXZ2_A0A0E0CXZ2_9ORYZ_40149 are exactly identical!
WARNING: Sequences tr_K4A4R3_K4A4R3_SETIT_4555 and tr_A0A0E0NSE3_A0A0E0NSE3_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_K4A4R3_K4A4R3_SETIT_4555 and tr_A0A0D3FG66_A0A0D3FG66_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_K4A4R3_K4A4R3_SETIT_4555 and tr_A0A0D9Z4M3_A0A0D9Z4M3_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_K4A4R3_K4A4R3_SETIT_4555 and tr_A0A0E0KB87_A0A0E0KB87_ORYPU_4537 are exactly identical!
WARNING: Sequences tr_K4A4R3_K4A4R3_SETIT_4555 and tr_A0A0D9VRV4_A0A0D9VRV4_9ORYZ_77586 are exactly identical!
WARNING: Sequences tr_A0A088A4P8_A0A088A4P8_APIME_7460 and tr_A0A2A3EBA4_A0A2A3EBA4_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A158NQA9_A0A158NQA9_ATTCE_12957 and tr_F4WBE6_F4WBE6_ACREC_103372 are exactly identical!
WARNING: Sequences tr_A0A158NQA9_A0A158NQA9_ATTCE_12957 and tr_A0A151X9R4_A0A151X9R4_9HYME_64791 are exactly identical!
WARNING: Sequences tr_A0A158NQA9_A0A158NQA9_ATTCE_12957 and tr_A0A151JNQ3_A0A151JNQ3_9HYME_471704 are exactly identical!
WARNING: Sequences tr_A0A158NQA9_A0A158NQA9_ATTCE_12957 and tr_A0A195B5R7_A0A195B5R7_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A158NQA9_A0A158NQA9_ATTCE_12957 and tr_A0A151JZ21_A0A151JZ21_9HYME_34720 are exactly identical!
WARNING: Sequences tr_A0A158NQA9_A0A158NQA9_ATTCE_12957 and tr_A0A195CV07_A0A195CV07_9HYME_456900 are exactly identical!
WARNING: Sequences tr_A0A158P009_A0A158P009_ATTCE_12957 and tr_F4X3L9_F4X3L9_ACREC_103372 are exactly identical!
WARNING: Sequences tr_A0A158P009_A0A158P009_ATTCE_12957 and tr_A0A151XJR2_A0A151XJR2_9HYME_64791 are exactly identical!
WARNING: Sequences tr_A0A158P009_A0A158P009_ATTCE_12957 and tr_A0A195E0S9_A0A195E0S9_9HYME_471704 are exactly identical!
WARNING: Sequences tr_A0A158P009_A0A158P009_ATTCE_12957 and tr_A0A195BN26_A0A195BN26_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A158P009_A0A158P009_ATTCE_12957 and tr_A0A195F306_A0A195F306_9HYME_34720 are exactly identical!
WARNING: Sequences tr_A0A158P009_A0A158P009_ATTCE_12957 and tr_A0A195CQN4_A0A195CQN4_9HYME_456900 are exactly identical!
WARNING: Sequences tr_I3JHC0_I3JHC0_ORENI_8128 and tr_H3CRL9_H3CRL9_TETNG_99883 are exactly identical!
WARNING: Sequences tr_I3JHC0_I3JHC0_ORENI_8128 and tr_A0A2I4BKA1_A0A2I4BKA1_9TELE_52670 are exactly identical!
WARNING: Sequences tr_I3KBW0_I3KBW0_ORENI_8128 and tr_A0A2U9C2T4_A0A2U9C2T4_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_I3M4J2_I3M4J2_ICTTR_43179 and tr_A0A286XV11_A0A286XV11_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_I3M4J2_I3M4J2_ICTTR_43179 and tr_A0A091DX77_A0A091DX77_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_H2RLT5_H2RLT5_TAKRU_31033 and tr_H3D4N5_H3D4N5_TETNG_99883 are exactly identical!
WARNING: Sequences tr_H2RLT5_H2RLT5_TAKRU_31033 and tr_A0A0P7XRA4_A0A0P7XRA4_9TELE_113540 are exactly identical!
WARNING: Sequences tr_H2RLT5_H2RLT5_TAKRU_31033 and tr_A0A2U9C3R7_A0A2U9C3R7_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_H2RZJ3_H2RZJ3_TAKRU_31033 and tr_H3CPL4_H3CPL4_TETNG_99883 are exactly identical!
WARNING: Sequences tr_H2TNA6_H2TNA6_TAKRU_31033 and tr_H3DBV8_H3DBV8_TETNG_99883 are exactly identical!
WARNING: Sequences tr_A0A180G986_A0A180G986_PUCT1_630390 and tr_E3KS20_E3KS20_PUCGT_418459 are exactly identical!
WARNING: Sequences tr_A0A286XA34_A0A286XA34_CAVPO_10141 and tr_A0A091D4A2_A0A091D4A2_FUKDA_885580 are exactly identical!
WARNING: Sequences sp_F4JSZ5_BIG1_ARATH_3702 and tr_D7MEW8_D7MEW8_ARALL_81972 are exactly identical!
WARNING: Sequences sp_F4JSZ5_BIG1_ARATH_3702 and tr_V4MD16_V4MD16_EUTSA_72664 are exactly identical!
WARNING: Sequences tr_A0A0K0JHD7_A0A0K0JHD7_BRUMA_6279 and tr_A0A0R3R772_A0A0R3R772_9BILA_42155 are exactly identical!
WARNING: Sequences tr_E5S7R3_E5S7R3_TRISP_6334 and tr_A0A0V1CUH8_A0A0V1CUH8_TRIBR_45882 are exactly identical!
WARNING: Sequences tr_E5S7R3_E5S7R3_TRISP_6334 and tr_A0A0V0U6N5_A0A0V0U6N5_9BILA_144512 are exactly identical!
WARNING: Sequences tr_E5SY31_E5SY31_TRISP_6334 and tr_E5T321_E5T321_TRISP_6334 are exactly identical!
WARNING: Sequences tr_A0A212EU77_A0A212EU77_DANPL_278856 and tr_A0A2A4JWU4_A0A2A4JWU4_HELVI_7102 are exactly identical!
WARNING: Sequences tr_G3N464_G3N464_GASAC_69293 and tr_A0A2U9C1M1_A0A2U9C1M1_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_G3T2K1_G3T2K1_LOXAF_9785 and tr_A0A337SRK0_A0A337SRK0_FELCA_9685 are exactly identical!
WARNING: Sequences tr_B4N7K5_B4N7K5_DROWI_7260 and tr_B4GKP2_B4GKP2_DROPE_7234 are exactly identical!
WARNING: Sequences tr_A0A0P8XF96_A0A0P8XF96_DROAN_7217 and tr_A0A0M4ES49_A0A0M4ES49_DROBS_30019 are exactly identical!
WARNING: Sequences tr_E6R420_E6R420_CRYGW_367775 and tr_A0A095D017_A0A095D017_CRYGR_294750 are exactly identical!
WARNING: Sequences tr_G0P5R6_G0P5R6_CAEBE_135651 and tr_G0P746_G0P746_CAEBE_135651 are exactly identical!
WARNING: Sequences tr_A0JLZ9_A0JLZ9_XENTR_8364 and tr_A0A1L8EQG8_A0A1L8EQG8_XENLA_8355 are exactly identical!
WARNING: Sequences tr_A0JLZ9_A0JLZ9_XENTR_8364 and tr_A0A1L8EY25_A0A1L8EY25_XENLA_8355 are exactly identical!
WARNING: Sequences tr_F6VJ21_F6VJ21_XENTR_8364 and tr_A0A1L8GQS9_A0A1L8GQS9_XENLA_8355 are exactly identical!
WARNING: Sequences tr_H3AAH7_H3AAH7_LATCH_7897 and tr_A0A3B1K8T5_A0A3B1K8T5_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_H3AAH7_H3AAH7_LATCH_7897 and tr_W5N9I3_W5N9I3_LEPOC_7918 are exactly identical!
WARNING: Sequences tr_H3AAH7_H3AAH7_LATCH_7897 and tr_A0A0P7VLW9_A0A0P7VLW9_9TELE_113540 are exactly identical!
WARNING: Sequences tr_D7KP56_D7KP56_ARALL_81972 and tr_V4L3G3_V4L3G3_EUTSA_72664 are exactly identical!
WARNING: Sequences tr_I1J7Y4_I1J7Y4_SOYBN_3847 and tr_I1JKK8_I1JKK8_SOYBN_3847 are exactly identical!
WARNING: Sequences tr_I1J7Y4_I1J7Y4_SOYBN_3847 and tr_A0A151TBR2_A0A151TBR2_CAJCA_3821 are exactly identical!
WARNING: Sequences tr_I1L6U0_I1L6U0_SOYBN_3847 and tr_K7MU01_K7MU01_SOYBN_3847 are exactly identical!
WARNING: Sequences tr_I1L6U0_I1L6U0_SOYBN_3847 and tr_A0A151TB78_A0A151TB78_CAJCA_3821 are exactly identical!
WARNING: Sequences tr_W7MUB4_W7MUB4_GIBM7_334819 and tr_S0EF49_S0EF49_GIBF5_1279085 are exactly identical!
WARNING: Sequences tr_W7MUB4_W7MUB4_GIBM7_334819 and tr_A0A0M9EWN6_A0A0M9EWN6_FUSLA_179993 are exactly identical!
WARNING: Sequences tr_W7MUB4_W7MUB4_GIBM7_334819 and tr_I1RJY4_I1RJY4_GIBZE_229533 are exactly identical!
WARNING: Sequences tr_W7MUB4_W7MUB4_GIBM7_334819 and tr_A0A2T4GTK6_A0A2T4GTK6_FUSCU_5516 are exactly identical!
WARNING: Sequences tr_W7MUB4_W7MUB4_GIBM7_334819 and tr_A0A2L2TSD8_A0A2L2TSD8_9HYPO_56646 are exactly identical!
WARNING: Sequences tr_W7MUB4_W7MUB4_GIBM7_334819 and tr_A0A365NHT4_A0A365NHT4_GIBIN_948311 are exactly identical!
WARNING: Sequences tr_A0A287PBT6_A0A287PBT6_HORVV_112509 and tr_M7ZXZ3_M7ZXZ3_TRIUA_4572 are exactly identical!
WARNING: Sequences tr_A0A287PBT6_A0A287PBT6_HORVV_112509 and tr_A0A3B6HSC9_A0A3B6HSC9_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_A0A287PBT6_A0A287PBT6_HORVV_112509 and tr_A0A3B6IVD2_A0A3B6IVD2_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_A0A287PBT6_A0A287PBT6_HORVV_112509 and tr_A0A3B6JJD6_A0A3B6JJD6_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_M4DD98_M4DD98_BRARP_51351 and tr_A0A0D3BWJ0_A0A0D3BWJ0_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_M4EV26_M4EV26_BRARP_51351 and tr_A0A078HL68_A0A078HL68_BRANA_3708 are exactly identical!
WARNING: Sequences tr_M4EV26_M4EV26_BRARP_51351 and tr_A0A0D3DZH2_A0A0D3DZH2_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_A0A3B1JE77_A0A3B1JE77_ASTMX_7994 and tr_A0A2D0R225_A0A2D0R225_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A3B1K2Q5_A0A3B1K2Q5_ASTMX_7994 and tr_A0A2D0R2Z2_A0A2D0R2Z2_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A3B1K3L8_A0A3B1K3L8_ASTMX_7994 and tr_W5U5R9_W5U5R9_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_W5LBS5_W5LBS5_ASTMX_7994 and tr_A0A2D0PJH0_A0A2D0PJH0_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A044T645_A0A044T645_ONCVO_6282 and tr_A0A182DZ18_A0A182DZ18_ONCOC_42157 are exactly identical!
WARNING: Sequences tr_A0A061DVY1_A0A061DVY1_THECC_3641 and tr_A0A0D2MTF9_A0A0D2MTF9_GOSRA_29730 are exactly identical!
WARNING: Sequences tr_A0A061DVY1_A0A061DVY1_THECC_3641 and tr_A0A1R3I7L9_A0A1R3I7L9_COCAP_210143 are exactly identical!
WARNING: Sequences tr_A0A061DVY1_A0A061DVY1_THECC_3641 and tr_A0A1U8L294_A0A1U8L294_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A061DVY1_A0A061DVY1_THECC_3641 and tr_A0A1U8LSW3_A0A1U8LSW3_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A061DVY1_A0A061DVY1_THECC_3641 and tr_A0A2P5B0B0_A0A2P5B0B0_TREOI_63057 are exactly identical!
WARNING: Sequences tr_A0A067FLX7_A0A067FLX7_CITSI_2711 and tr_V4U8V2_V4U8V2_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_A0A067FLX7_A0A067FLX7_CITSI_2711 and tr_A0A2H5P1C3_A0A2H5P1C3_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A067H1X1_A0A067H1X1_CITSI_2711 and tr_V4U325_V4U325_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_A0A067H1X1_A0A067H1X1_CITSI_2711 and tr_A0A2H5NPI1_A0A2H5NPI1_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A067QLQ8_A0A067QLQ8_ZOONE_136037 and tr_A0A2P8XTA4_A0A2P8XTA4_BLAGE_6973 are exactly identical!
WARNING: Sequences tr_A0A0A0K1N6_A0A0A0K1N6_CUCSA_3659 and tr_A0A1S3BQB3_A0A1S3BQB3_CUCME_3656 are exactly identical!
WARNING: Sequences tr_A0A0A0L924_A0A0A0L924_CUCSA_3659 and tr_A0A1S3AVC3_A0A1S3AVC3_CUCME_3656 are exactly identical!
WARNING: Sequences tr_A0A0D2PM19_A0A0D2PM19_GOSRA_29730 and tr_A0A1U8LTV6_A0A1U8LTV6_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0D2PM19_A0A0D2PM19_GOSRA_29730 and tr_A0A1U8N118_A0A1U8N118_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0D2RR02_A0A0D2RR02_GOSRA_29730 and tr_A0A1U8MS70_A0A1U8MS70_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0D2TBX1_A0A0D2TBX1_GOSRA_29730 and tr_A0A1U8L7W8_A0A1U8L7W8_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0A1MQ22_A0A0A1MQ22_9FUNG_58291 and tr_A0A0A1NFA7_A0A0A1NFA7_9FUNG_58291 are exactly identical!
WARNING: Sequences tr_A0A0A1MQ22_A0A0A1MQ22_9FUNG_58291 and tr_A0A367K606_A0A367K606_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A0A1MQ22_A0A0A1MQ22_9FUNG_58291 and tr_A0A367KDY1_A0A367KDY1_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A0R3WL57_A0A0R3WL57_HYDTA_6205 and tr_A0A158R9L6_A0A158R9L6_TAEAS_60517 are exactly identical!
WARNING: Sequences tr_A0A151M467_A0A151M467_ALLMI_8496 and tr_A0A3Q0HBM5_A0A3Q0HBM5_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A0L9U3B3_A0A0L9U3B3_PHAAN_3914 and tr_A0A1S3T931_A0A1S3T931_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_A0A0L9U3B3_A0A0L9U3B3_PHAAN_3914 and tr_A0A3Q0EMG4_A0A3Q0EMG4_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_A0A0L9UYN2_A0A0L9UYN2_PHAAN_3914 and tr_A0A1S3VXB0_A0A1S3VXB0_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_A0A194RH69_A0A194RH69_PAPMA_76193 and tr_A0A194QB74_A0A194QB74_PAPXU_66420 are exactly identical!
WARNING: Sequences tr_A0A2I0LHM1_A0A2I0LHM1_COLLI_8932 and tr_A0A218U8S2_A0A218U8S2_9PASE_299123 are exactly identical!
WARNING: Sequences tr_A0A0V0RUG6_A0A0V0RUG6_9BILA_6336 and tr_A0A0V1L9Y4_A0A0V1L9Y4_9BILA_6335 are exactly identical!
WARNING: Sequences tr_A0A0V0RUG6_A0A0V0RUG6_9BILA_6336 and tr_A0A0V1A4Y8_A0A0V1A4Y8_9BILA_990121 are exactly identical!
WARNING: Sequences tr_A0A0V0SNQ1_A0A0V0SNQ1_9BILA_6336 and tr_A0A0V1CVG3_A0A0V1CVG3_TRIBR_45882 are exactly identical!
WARNING: Sequences tr_A0A0V0SNQ1_A0A0V0SNQ1_9BILA_6336 and tr_A0A0V0W7F6_A0A0V0W7F6_9BILA_92179 are exactly identical!
WARNING: Sequences tr_A0A0V0SNQ1_A0A0V0SNQ1_9BILA_6336 and tr_A0A0V0VTZ4_A0A0V0VTZ4_9BILA_181606 are exactly identical!
WARNING: Sequences tr_A0A0V0SNQ1_A0A0V0SNQ1_9BILA_6336 and tr_A0A0V1LA46_A0A0V1LA46_9BILA_6335 are exactly identical!
WARNING: Sequences tr_A0A0V0SNQ1_A0A0V0SNQ1_9BILA_6336 and tr_A0A0V1A3I1_A0A0V1A3I1_9BILA_990121 are exactly identical!
WARNING: Sequences tr_A0A0V0SNQ1_A0A0V0SNQ1_9BILA_6336 and tr_A0A0V1P577_A0A0V1P577_9BILA_92180 are exactly identical!
WARNING: Sequences tr_A0A0V0SNQ1_A0A0V0SNQ1_9BILA_6336 and tr_A0A0V0U3S1_A0A0V0U3S1_9BILA_144512 are exactly identical!
WARNING: Sequences tr_A0A1S4BP94_A0A1S4BP94_TOBAC_4097 and tr_A0A314KS55_A0A314KS55_NICAT_49451 are exactly identical!
WARNING: Sequences tr_A0A1S4BP94_A0A1S4BP94_TOBAC_4097 and tr_A0A1U7YIL0_A0A1U7YIL0_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S3H1T5_A0A1S3H1T5_LINUN_7574 and tr_A0A1S3HZY5_A0A1S3HZY5_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3H1T5_A0A1S3H1T5_LINUN_7574 and tr_A0A1S3HZZ0_A0A1S3HZZ0_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3H1T5_A0A1S3H1T5_LINUN_7574 and tr_A0A1S3HZZ2_A0A1S3HZZ2_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3H1T5_A0A1S3H1T5_LINUN_7574 and tr_A0A1S3I179_A0A1S3I179_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3H9W7_A0A1S3H9W7_LINUN_7574 and tr_A0A1S3HCD6_A0A1S3HCD6_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3LI31_A0A1S3LI31_SALSA_8030 and tr_A0A1S3MCL0_A0A1S3MCL0_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3LI31_A0A1S3LI31_SALSA_8030 and tr_A0A060X081_A0A060X081_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3LLR5_A0A1S3LLR5_SALSA_8030 and tr_A0A1S3MFW3_A0A1S3MFW3_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3LLR5_A0A1S3LLR5_SALSA_8030 and tr_A0A060WVQ9_A0A060WVQ9_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3LLR5_A0A1S3LLR5_SALSA_8030 and tr_A0A060Z1X7_A0A060Z1X7_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3MLG5_A0A1S3MLG5_SALSA_8030 and tr_A0A060WS75_A0A060WS75_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3N6M2_A0A1S3N6M2_SALSA_8030 and tr_A0A1S3RY16_A0A1S3RY16_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3Q5M3_A0A1S3Q5M3_SALSA_8030 and tr_A0A1S3SJL3_A0A1S3SJL3_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3Q5M3_A0A1S3Q5M3_SALSA_8030 and tr_A0A060WYU9_A0A060WYU9_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3SX51_A0A1S3SX51_SALSA_8030 and tr_A0A060WAA7_A0A060WAA7_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A2D0S8G8_A0A2D0S8G8_ICTPU_7998 and tr_W5UHQ4_W5UHQ4_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0SA88_A0A2D0SA88_ICTPU_7998 and tr_A0A2D0SB13_A0A2D0SB13_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0SA88_A0A2D0SA88_ICTPU_7998 and tr_A0A2D0SBN6_A0A2D0SBN6_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2G3AH52_A0A2G3AH52_CAPAN_4072 and tr_A0A2G3DDV3_A0A2G3DDV3_CAPCH_80379 are exactly identical!
WARNING: Sequences tr_A0A2U1NFZ7_A0A2U1NFZ7_ARTAN_35608 and tr_A0A2U1QMD0_A0A2U1QMD0_ARTAN_35608 are exactly identical!
WARNING: Sequences tr_A0A2Y9NDG0_A0A2Y9NDG0_DELLE_9749 and tr_A0A2Y9T5V5_A0A2Y9T5V5_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2Y9NDG0_A0A2Y9NDG0_DELLE_9749 and tr_A0A383Z624_A0A383Z624_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A0A2Y9PBN1_A0A2Y9PBN1_DELLE_9749 and tr_A0A2Y9EYM2_A0A2Y9EYM2_PHYCD_9755 are exactly identical!
WARNING: Duplicate sequences found: 528

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UPP2/3_mltree/Q9UPP2.raxml.reduced.phy

Alignment comprises 1 partitions and 85 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 85 / 85
Gaps: 0.35 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UPP2/3_mltree/Q9UPP2.raxml.rba

Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 993 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 85 / 6800
[00:00:00] Data distribution: max. searches per worker: 10

Starting ML tree search with 20 distinct starting trees

[00:00:00 -102528.585216] Initial branch length optimization
[00:00:02 -82728.483005] Model parameter optimization (eps = 10.000000)
[00:00:23 -82504.590628] AUTODETECT spr round 1 (radius: 5)
[00:02:05 -41376.249897] AUTODETECT spr round 2 (radius: 10)
[00:03:43 -27345.665246] AUTODETECT spr round 3 (radius: 15)
[00:05:30 -19903.746999] AUTODETECT spr round 4 (radius: 20)
[00:07:18 -17657.602474] AUTODETECT spr round 5 (radius: 25)
[00:09:21 -16220.762389] SPR radius for FAST iterations: 25 (autodetect)
[00:09:21 -16220.762389] Model parameter optimization (eps = 3.000000)
[00:09:36 -16196.663170] FAST spr round 1 (radius: 25)
[00:11:10 -12982.378442] FAST spr round 2 (radius: 25)
[00:12:31 -12525.735929] FAST spr round 3 (radius: 25)
[00:13:48 -12515.920999] FAST spr round 4 (radius: 25)
[00:15:02 -12510.510335] FAST spr round 5 (radius: 25)
[00:16:14 -12510.090655] FAST spr round 6 (radius: 25)
[00:17:27 -12510.090591] Model parameter optimization (eps = 1.000000)
[00:17:38 -12507.367277] SLOW spr round 1 (radius: 5)
[00:18:59 -12506.168116] SLOW spr round 2 (radius: 5)
[00:20:22 -12505.513072] SLOW spr round 3 (radius: 5)
[00:21:45 -12505.512789] SLOW spr round 4 (radius: 10)
[00:23:12 -12505.237352] SLOW spr round 5 (radius: 5)
[00:24:49 -12504.331397] SLOW spr round 6 (radius: 5)
[00:26:17 -12504.330357] SLOW spr round 7 (radius: 10)
[00:27:45 -12504.330290] SLOW spr round 8 (radius: 15)
[00:29:37 -12498.295965] SLOW spr round 9 (radius: 5)
[00:31:20 -12497.598983] SLOW spr round 10 (radius: 5)
[00:32:51 -12497.598949] SLOW spr round 11 (radius: 10)
[00:34:17 -12497.598939] SLOW spr round 12 (radius: 15)
[00:36:07 -12497.598939] SLOW spr round 13 (radius: 20)
[00:38:22 -12497.598935] SLOW spr round 14 (radius: 25)
[00:41:18 -12497.598924] Model parameter optimization (eps = 0.100000)

[00:41:25] [worker #0] ML tree search #1, logLikelihood: -12497.488922

[00:41:25 -100944.508395] Initial branch length optimization
[00:41:28 -81497.339633] Model parameter optimization (eps = 10.000000)
[00:41:57 -81238.871279] AUTODETECT spr round 1 (radius: 5)
[00:43:38 -41456.106774] AUTODETECT spr round 2 (radius: 10)
[00:45:17 -28787.572654] AUTODETECT spr round 3 (radius: 15)
[00:47:01 -22520.050991] AUTODETECT spr round 4 (radius: 20)
[00:48:52 -18043.634651] AUTODETECT spr round 5 (radius: 25)
[00:50:55 -16039.112739] SPR radius for FAST iterations: 25 (autodetect)
[00:50:55 -16039.112739] Model parameter optimization (eps = 3.000000)
[00:51:07 -16036.028584] FAST spr round 1 (radius: 25)
[00:52:41 -12807.382656] FAST spr round 2 (radius: 25)
[00:54:02 -12566.345866] FAST spr round 3 (radius: 25)
[00:55:21 -12542.421622] FAST spr round 4 (radius: 25)
[00:56:36 -12538.386399] FAST spr round 5 (radius: 25)
[00:57:50 -12538.385724] Model parameter optimization (eps = 1.000000)
[00:58:16 -12535.614344] SLOW spr round 1 (radius: 5)
[00:59:40 -12531.455280] SLOW spr round 2 (radius: 5)
[01:01:05 -12530.046780] SLOW spr round 3 (radius: 5)
[01:02:27 -12530.042426] SLOW spr round 4 (radius: 10)
[01:03:53 -12530.042404] SLOW spr round 5 (radius: 15)
[01:05:46 -12527.062260] SLOW spr round 6 (radius: 5)
[01:07:26 -12525.170300] SLOW spr round 7 (radius: 5)
[01:08:30] [worker #1] ML tree search #2, logLikelihood: -12495.514466
[01:08:57 -12525.170282] SLOW spr round 8 (radius: 10)
[01:10:24 -12525.059614] SLOW spr round 9 (radius: 5)
[01:11:59 -12525.059614] SLOW spr round 10 (radius: 10)
[01:13:28 -12525.059614] SLOW spr round 11 (radius: 15)
[01:15:20 -12523.663242] SLOW spr round 12 (radius: 5)
[01:17:01 -12523.663240] SLOW spr round 13 (radius: 10)
[01:18:38 -12523.663240] SLOW spr round 14 (radius: 15)
[01:20:27 -12523.663240] SLOW spr round 15 (radius: 20)
[01:22:34 -12521.417451] SLOW spr round 16 (radius: 5)
[01:24:19 -12519.708756] SLOW spr round 17 (radius: 5)
[01:25:52 -12519.708731] SLOW spr round 18 (radius: 10)
[01:27:19 -12519.708731] SLOW spr round 19 (radius: 15)
[01:29:11 -12519.708731] SLOW spr round 20 (radius: 20)
[01:31:16 -12519.708731] SLOW spr round 21 (radius: 25)
[01:33:50 -12519.708731] Model parameter optimization (eps = 0.100000)

[01:33:59] [worker #0] ML tree search #3, logLikelihood: -12519.275002

[01:33:59 -101471.972084] Initial branch length optimization
[01:34:01 -82294.161853] Model parameter optimization (eps = 10.000000)
[01:34:23 -82037.122319] AUTODETECT spr round 1 (radius: 5)
[01:36:03 -40826.597436] AUTODETECT spr round 2 (radius: 10)
[01:37:41 -27613.449479] AUTODETECT spr round 3 (radius: 15)
[01:39:27 -20910.668467] AUTODETECT spr round 4 (radius: 20)
[01:41:27 -16813.187544] AUTODETECT spr round 5 (radius: 25)
[01:43:35 -15401.887209] SPR radius for FAST iterations: 25 (autodetect)
[01:43:35 -15401.887209] Model parameter optimization (eps = 3.000000)
[01:43:54 -15386.622428] FAST spr round 1 (radius: 25)
[01:45:32 -12728.623517] FAST spr round 2 (radius: 25)
[01:46:55 -12566.942814] FAST spr round 3 (radius: 25)
[01:48:14 -12553.956715] FAST spr round 4 (radius: 25)
[01:49:29 -12548.245363] FAST spr round 5 (radius: 25)
[01:50:42 -12547.730517] FAST spr round 6 (radius: 25)
[01:51:55 -12547.729701] Model parameter optimization (eps = 1.000000)
[01:52:08 -12542.901977] SLOW spr round 1 (radius: 5)
[01:53:32 -12539.987852] SLOW spr round 2 (radius: 5)
[01:54:57 -12539.815572] SLOW spr round 3 (radius: 5)
[01:56:19 -12539.815414] SLOW spr round 4 (radius: 10)
[01:57:46 -12539.783724] SLOW spr round 5 (radius: 15)
[01:59:41 -12536.803152] SLOW spr round 6 (radius: 5)
[02:01:24 -12528.965526] SLOW spr round 7 (radius: 5)
[02:02:57 -12528.576653] SLOW spr round 8 (radius: 5)
[02:04:22 -12528.466533] SLOW spr round 9 (radius: 5)
[02:05:45 -12527.993024] SLOW spr round 10 (radius: 5)
[02:07:08 -12527.992675] SLOW spr round 11 (radius: 10)
[02:08:34 -12527.202256] SLOW spr round 12 (radius: 5)
[02:10:11 -12524.787396] SLOW spr round 13 (radius: 5)
[02:11:36 -12524.744112] SLOW spr round 14 (radius: 10)
[02:13:01 -12524.744029] SLOW spr round 15 (radius: 15)
[02:14:56 -12510.487701] SLOW spr round 16 (radius: 5)
[02:15:18] [worker #1] ML tree search #4, logLikelihood: -12495.138279
[02:16:38 -12505.397021] SLOW spr round 17 (radius: 5)
[02:18:08 -12505.396715] SLOW spr round 18 (radius: 10)
[02:19:34 -12505.396697] SLOW spr round 19 (radius: 15)
[02:21:25 -12505.139632] SLOW spr round 20 (radius: 5)
[02:23:06 -12504.769876] SLOW spr round 21 (radius: 5)
[02:24:36 -12504.769624] SLOW spr round 22 (radius: 10)
[02:26:02 -12504.769622] SLOW spr round 23 (radius: 15)
[02:27:53 -12504.769622] SLOW spr round 24 (radius: 20)
[02:30:09 -12503.460314] SLOW spr round 25 (radius: 5)
[02:31:54 -12502.414086] SLOW spr round 26 (radius: 5)
[02:33:28 -12500.846908] SLOW spr round 27 (radius: 5)
[02:34:54 -12500.452111] SLOW spr round 28 (radius: 5)
[02:36:18 -12499.802552] SLOW spr round 29 (radius: 5)
[02:37:42 -12498.262664] SLOW spr round 30 (radius: 5)
[02:39:05 -12498.099429] SLOW spr round 31 (radius: 5)
[02:40:26 -12498.099363] SLOW spr round 32 (radius: 10)
[02:41:52 -12498.099362] SLOW spr round 33 (radius: 15)
[02:43:44 -12498.099362] SLOW spr round 34 (radius: 20)
[02:46:00 -12498.099355] SLOW spr round 35 (radius: 25)
[02:48:50 -12498.099355] Model parameter optimization (eps = 0.100000)

[02:49:02] [worker #0] ML tree search #5, logLikelihood: -12496.951642

[02:49:02 -100712.198167] Initial branch length optimization
[02:49:04 -81361.962088] Model parameter optimization (eps = 10.000000)
[02:49:30 -81078.721324] AUTODETECT spr round 1 (radius: 5)
[02:51:10 -39223.161949] AUTODETECT spr round 2 (radius: 10)
[02:52:47 -26005.137163] AUTODETECT spr round 3 (radius: 15)
[02:54:30 -21282.016870] AUTODETECT spr round 4 (radius: 20)
[02:56:22 -18795.602647] AUTODETECT spr round 5 (radius: 25)
[02:58:36 -17783.780944] SPR radius for FAST iterations: 25 (autodetect)
[02:58:36 -17783.780944] Model parameter optimization (eps = 3.000000)
[02:58:47 -17778.364337] FAST spr round 1 (radius: 25)
[03:00:23 -14956.514331] FAST spr round 2 (radius: 25)
[03:01:46 -14532.834710] FAST spr round 3 (radius: 25)
[03:03:05 -14297.528437] FAST spr round 4 (radius: 25)
[03:04:20 -13623.467915] FAST spr round 5 (radius: 25)
[03:05:37 -13064.189344] FAST spr round 6 (radius: 25)
[03:06:56 -12888.435326] FAST spr round 7 (radius: 25)
[03:08:14 -12827.833464] FAST spr round 8 (radius: 25)
[03:09:34 -12786.597515] FAST spr round 9 (radius: 25)
[03:10:49 -12786.597423] Model parameter optimization (eps = 1.000000)
[03:11:03 -12782.589401] SLOW spr round 1 (radius: 5)
[03:12:00] [worker #1] ML tree search #6, logLikelihood: -12491.556642
[03:12:30 -12780.044308] SLOW spr round 2 (radius: 5)
[03:13:53 -12780.043470] SLOW spr round 3 (radius: 10)
[03:15:24 -12675.988534] SLOW spr round 4 (radius: 5)
[03:17:05 -12662.443320] SLOW spr round 5 (radius: 5)
[03:18:35 -12659.504219] SLOW spr round 6 (radius: 5)
[03:20:00 -12655.908973] SLOW spr round 7 (radius: 5)
[03:21:23 -12655.908972] SLOW spr round 8 (radius: 10)
[03:22:49 -12654.940043] SLOW spr round 9 (radius: 5)
[03:24:27 -12654.940002] SLOW spr round 10 (radius: 10)
[03:25:56 -12654.940002] SLOW spr round 11 (radius: 15)
[03:27:53 -12572.062287] SLOW spr round 12 (radius: 5)
[03:29:38 -12524.850812] SLOW spr round 13 (radius: 5)
[03:31:09 -12519.510948] SLOW spr round 14 (radius: 5)
[03:32:32 -12517.838958] SLOW spr round 15 (radius: 5)
[03:33:54 -12517.838958] SLOW spr round 16 (radius: 10)
[03:35:20 -12517.838958] SLOW spr round 17 (radius: 15)
[03:37:14 -12509.846734] SLOW spr round 18 (radius: 5)
[03:38:54 -12508.879158] SLOW spr round 19 (radius: 5)
[03:40:24 -12508.879158] SLOW spr round 20 (radius: 10)
[03:41:51 -12508.778665] SLOW spr round 21 (radius: 5)
[03:43:28 -12508.276893] SLOW spr round 22 (radius: 5)
[03:44:53 -12508.276893] SLOW spr round 23 (radius: 10)
[03:46:19 -12507.706037] SLOW spr round 24 (radius: 5)
[03:47:54 -12507.706037] SLOW spr round 25 (radius: 10)
[03:49:22 -12507.706037] SLOW spr round 26 (radius: 15)
[03:51:14 -12507.706037] SLOW spr round 27 (radius: 20)
[03:53:28 -12496.047113] SLOW spr round 28 (radius: 5)
[03:55:14 -12495.729657] SLOW spr round 29 (radius: 5)
[03:56:46 -12495.729627] SLOW spr round 30 (radius: 10)
[03:58:12 -12495.729627] SLOW spr round 31 (radius: 15)
[04:00:06 -12495.729627] SLOW spr round 32 (radius: 20)
[04:02:22 -12495.729627] SLOW spr round 33 (radius: 25)
[04:05:11 -12495.302301] SLOW spr round 34 (radius: 5)
[04:05:29] [worker #1] ML tree search #8, logLikelihood: -12487.501092
[04:06:55 -12495.302073] SLOW spr round 35 (radius: 10)
[04:08:33 -12495.302068] SLOW spr round 36 (radius: 15)
[04:10:23 -12495.302067] SLOW spr round 37 (radius: 20)
[04:12:42 -12495.302067] SLOW spr round 38 (radius: 25)
[04:15:31 -12495.302067] Model parameter optimization (eps = 0.100000)

[04:15:40] [worker #0] ML tree search #7, logLikelihood: -12495.090261

[04:15:40 -101987.966966] Initial branch length optimization
[04:15:42 -81810.415862] Model parameter optimization (eps = 10.000000)
[04:16:03 -81580.140143] AUTODETECT spr round 1 (radius: 5)
[04:17:42 -41016.526011] AUTODETECT spr round 2 (radius: 10)
[04:19:23 -27598.246447] AUTODETECT spr round 3 (radius: 15)
[04:21:08 -19811.521120] AUTODETECT spr round 4 (radius: 20)
[04:23:04 -16384.688462] AUTODETECT spr round 5 (radius: 25)
[04:25:16 -15538.148982] SPR radius for FAST iterations: 25 (autodetect)
[04:25:16 -15538.148982] Model parameter optimization (eps = 3.000000)
[04:25:36 -15526.218961] FAST spr round 1 (radius: 25)
[04:27:12 -12929.372039] FAST spr round 2 (radius: 25)
[04:28:33 -12676.554090] FAST spr round 3 (radius: 25)
[04:29:50 -12561.231529] FAST spr round 4 (radius: 25)
[04:31:05 -12553.050638] FAST spr round 5 (radius: 25)
[04:32:19 -12552.045166] FAST spr round 6 (radius: 25)
[04:33:32 -12552.045166] Model parameter optimization (eps = 1.000000)
[04:33:46 -12550.027103] SLOW spr round 1 (radius: 5)
[04:35:09 -12542.518356] SLOW spr round 2 (radius: 5)
[04:36:33 -12541.193877] SLOW spr round 3 (radius: 5)
[04:37:56 -12541.192833] SLOW spr round 4 (radius: 10)
[04:39:24 -12518.289064] SLOW spr round 5 (radius: 5)
[04:41:03 -12517.051860] SLOW spr round 6 (radius: 5)
[04:42:31 -12517.051725] SLOW spr round 7 (radius: 10)
[04:44:00 -12516.537458] SLOW spr round 8 (radius: 5)
[04:45:37 -12516.537262] SLOW spr round 9 (radius: 10)
[04:47:08 -12515.984986] SLOW spr round 10 (radius: 5)
[04:48:46 -12507.700845] SLOW spr round 11 (radius: 5)
[04:50:14 -12501.464922] SLOW spr round 12 (radius: 5)
[04:51:38 -12501.263842] SLOW spr round 13 (radius: 5)
[04:52:59 -12501.263687] SLOW spr round 14 (radius: 10)
[04:54:25 -12501.263593] SLOW spr round 15 (radius: 15)
[04:56:17 -12497.813680] SLOW spr round 16 (radius: 5)
[04:56:55] [worker #1] ML tree search #10, logLikelihood: -12497.300542
[04:57:57 -12496.440659] SLOW spr round 17 (radius: 5)
[04:59:28 -12496.440559] SLOW spr round 18 (radius: 10)
[05:00:54 -12496.440487] SLOW spr round 19 (radius: 15)
[05:02:45 -12496.440441] SLOW spr round 20 (radius: 20)
[05:04:56 -12491.565584] SLOW spr round 21 (radius: 5)
[05:06:39 -12491.565447] SLOW spr round 22 (radius: 10)
[05:08:17 -12488.236275] SLOW spr round 23 (radius: 5)
[05:09:54 -12482.478945] SLOW spr round 24 (radius: 5)
[05:11:20 -12480.874809] SLOW spr round 25 (radius: 5)
[05:12:43 -12480.874155] SLOW spr round 26 (radius: 10)
[05:14:09 -12480.874096] SLOW spr round 27 (radius: 15)
[05:16:00 -12480.874084] SLOW spr round 28 (radius: 20)
[05:18:09 -12480.874084] SLOW spr round 29 (radius: 25)
[05:20:39 -12480.874084] Model parameter optimization (eps = 0.100000)

[05:20:50] [worker #0] ML tree search #9, logLikelihood: -12479.115991

[05:20:50 -100391.882522] Initial branch length optimization
[05:20:52 -81414.356245] Model parameter optimization (eps = 10.000000)
[05:21:17 -81160.959824] AUTODETECT spr round 1 (radius: 5)
[05:22:58 -41522.189202] AUTODETECT spr round 2 (radius: 10)
[05:24:38 -27754.442361] AUTODETECT spr round 3 (radius: 15)
[05:26:20 -21703.530164] AUTODETECT spr round 4 (radius: 20)
[05:28:14 -17669.892644] AUTODETECT spr round 5 (radius: 25)
[05:30:30 -16419.348416] SPR radius for FAST iterations: 25 (autodetect)
[05:30:30 -16419.348416] Model parameter optimization (eps = 3.000000)
[05:30:47 -16407.764246] FAST spr round 1 (radius: 25)
[05:32:25 -12790.299598] FAST spr round 2 (radius: 25)
[05:33:46 -12576.391654] FAST spr round 3 (radius: 25)
[05:35:03 -12529.228945] FAST spr round 4 (radius: 25)
[05:36:17 -12527.980996] FAST spr round 5 (radius: 25)
[05:37:29 -12518.778889] FAST spr round 6 (radius: 25)
[05:38:41 -12518.778809] Model parameter optimization (eps = 1.000000)
[05:38:48 -12517.950972] SLOW spr round 1 (radius: 5)
[05:40:12 -12511.614491] SLOW spr round 2 (radius: 5)
[05:41:33 -12511.327184] SLOW spr round 3 (radius: 5)
[05:42:53 -12511.327139] SLOW spr round 4 (radius: 10)
[05:44:20 -12506.647395] SLOW spr round 5 (radius: 5)
[05:45:58 -12503.930306] SLOW spr round 6 (radius: 5)
[05:47:25 -12500.618455] SLOW spr round 7 (radius: 5)
[05:48:47 -12498.678471] SLOW spr round 8 (radius: 5)
[05:50:07 -12498.678255] SLOW spr round 9 (radius: 10)
[05:51:32 -12495.694337] SLOW spr round 10 (radius: 5)
[05:53:08 -12495.112660] SLOW spr round 11 (radius: 5)
[05:54:34 -12488.436290] SLOW spr round 12 (radius: 5)
[05:55:55 -12488.436257] SLOW spr round 13 (radius: 10)
[05:57:19 -12488.436257] SLOW spr round 14 (radius: 15)
[05:59:11 -12488.436257] SLOW spr round 15 (radius: 20)
[06:01:32] [worker #1] ML tree search #12, logLikelihood: -12490.130737
[06:01:37 -12488.436257] SLOW spr round 16 (radius: 25)
[06:04:49 -12488.436257] Model parameter optimization (eps = 0.100000)

[06:04:58] [worker #0] ML tree search #11, logLikelihood: -12488.291385

[06:04:58 -99908.740601] Initial branch length optimization
[06:05:00 -81407.518234] Model parameter optimization (eps = 10.000000)
[06:05:28 -81172.998809] AUTODETECT spr round 1 (radius: 5)
[06:07:07 -39791.392326] AUTODETECT spr round 2 (radius: 10)
[06:08:46 -25915.150618] AUTODETECT spr round 3 (radius: 15)
[06:10:37 -19366.874158] AUTODETECT spr round 4 (radius: 20)
[06:12:42 -16140.035381] AUTODETECT spr round 5 (radius: 25)
[06:14:56 -15319.602161] SPR radius for FAST iterations: 25 (autodetect)
[06:14:56 -15319.602161] Model parameter optimization (eps = 3.000000)
[06:15:12 -15308.914192] FAST spr round 1 (radius: 25)
[06:16:56 -12733.394789] FAST spr round 2 (radius: 25)
[06:18:22 -12561.863721] FAST spr round 3 (radius: 25)
[06:19:42 -12533.748308] FAST spr round 4 (radius: 25)
[06:20:58 -12532.702931] FAST spr round 5 (radius: 25)
[06:22:13 -12532.702403] Model parameter optimization (eps = 1.000000)
[06:22:20 -12531.876222] SLOW spr round 1 (radius: 5)
[06:23:44 -12529.939563] SLOW spr round 2 (radius: 5)
[06:25:07 -12529.938784] SLOW spr round 3 (radius: 10)
[06:26:37 -12526.641066] SLOW spr round 4 (radius: 5)
[06:28:15 -12525.144378] SLOW spr round 5 (radius: 5)
[06:29:43 -12525.144092] SLOW spr round 6 (radius: 10)
[06:31:13 -12525.143963] SLOW spr round 7 (radius: 15)
[06:33:07 -12496.996352] SLOW spr round 8 (radius: 5)
[06:34:50 -12492.098199] SLOW spr round 9 (radius: 5)
[06:36:22 -12491.651233] SLOW spr round 10 (radius: 5)
[06:37:46 -12491.649751] SLOW spr round 11 (radius: 10)
[06:39:14 -12491.649652] SLOW spr round 12 (radius: 15)
[06:41:02 -12491.649648] SLOW spr round 13 (radius: 20)
[06:43:11 -12491.649647] SLOW spr round 14 (radius: 25)
[06:45:55 -12491.649647] Model parameter optimization (eps = 0.100000)

[06:46:04] [worker #0] ML tree search #13, logLikelihood: -12491.511226

[06:46:04 -101645.281596] Initial branch length optimization
[06:46:07 -81951.048920] Model parameter optimization (eps = 10.000000)
[06:46:34 -81681.915825] AUTODETECT spr round 1 (radius: 5)
[06:48:16 -40612.507374] AUTODETECT spr round 2 (radius: 10)
[06:49:54 -26548.559624] AUTODETECT spr round 3 (radius: 15)
[06:51:42 -19320.981835] AUTODETECT spr round 4 (radius: 20)
[06:53:35 -17440.611999] AUTODETECT spr round 5 (radius: 25)
[06:55:35 -16527.477912] SPR radius for FAST iterations: 25 (autodetect)
[06:55:35 -16527.477912] Model parameter optimization (eps = 3.000000)
[06:55:52 -16511.114521] FAST spr round 1 (radius: 25)
[06:56:25] [worker #1] ML tree search #14, logLikelihood: -12507.355328
[06:57:29 -13117.103560] FAST spr round 2 (radius: 25)
[06:58:50 -12588.309365] FAST spr round 3 (radius: 25)
[07:00:08 -12536.945325] FAST spr round 4 (radius: 25)
[07:01:22 -12533.117996] FAST spr round 5 (radius: 25)
[07:02:35 -12532.394329] FAST spr round 6 (radius: 25)
[07:03:47 -12532.394199] Model parameter optimization (eps = 1.000000)
[07:03:58 -12529.835286] SLOW spr round 1 (radius: 5)
[07:05:20 -12522.863652] SLOW spr round 2 (radius: 5)
[07:06:43 -12521.028579] SLOW spr round 3 (radius: 5)
[07:08:07 -12521.027787] SLOW spr round 4 (radius: 10)
[07:09:37 -12514.076817] SLOW spr round 5 (radius: 5)
[07:11:16 -12513.606194] SLOW spr round 6 (radius: 5)
[07:12:46 -12513.606030] SLOW spr round 7 (radius: 10)
[07:14:14 -12513.527130] SLOW spr round 8 (radius: 15)
[07:16:11 -12513.176803] SLOW spr round 9 (radius: 5)
[07:17:54 -12513.176768] SLOW spr round 10 (radius: 10)
[07:19:31 -12508.674383] SLOW spr round 11 (radius: 5)
[07:21:06 -12508.674357] SLOW spr round 12 (radius: 10)
[07:22:35 -12508.674351] SLOW spr round 13 (radius: 15)
[07:24:26 -12508.674351] SLOW spr round 14 (radius: 20)
[07:26:56 -12504.126287] SLOW spr round 15 (radius: 5)
[07:28:42 -12501.759179] SLOW spr round 16 (radius: 5)
[07:30:18 -12497.990391] SLOW spr round 17 (radius: 5)
[07:31:43 -12497.989509] SLOW spr round 18 (radius: 10)
[07:33:10 -12497.011876] SLOW spr round 19 (radius: 5)
[07:34:46 -12497.011847] SLOW spr round 20 (radius: 10)
[07:36:15 -12497.011846] SLOW spr round 21 (radius: 15)
[07:38:05 -12497.011846] SLOW spr round 22 (radius: 20)
[07:40:26 -12497.011846] SLOW spr round 23 (radius: 25)
[07:43:32 -12496.580895] SLOW spr round 24 (radius: 5)
[07:45:17 -12496.319748] SLOW spr round 25 (radius: 5)
[07:46:50 -12496.319233] SLOW spr round 26 (radius: 10)
[07:48:18 -12495.776222] SLOW spr round 27 (radius: 5)
[07:49:54 -12495.776178] SLOW spr round 28 (radius: 10)
[07:51:25 -12495.776156] SLOW spr round 29 (radius: 15)
[07:53:14 -12495.776156] SLOW spr round 30 (radius: 20)
[07:55:33 -12495.776156] SLOW spr round 31 (radius: 25)
[07:58:41 -12495.776156] Model parameter optimization (eps = 0.100000)

[07:58:47] [worker #0] ML tree search #15, logLikelihood: -12495.701322

[07:58:47 -100031.349824] Initial branch length optimization
[07:58:50 -80669.972251] Model parameter optimization (eps = 10.000000)
[07:59:15 -80455.997140] AUTODETECT spr round 1 (radius: 5)
[08:00:53 -40533.734375] AUTODETECT spr round 2 (radius: 10)
[08:02:30 -27779.266575] AUTODETECT spr round 3 (radius: 15)
[08:04:15 -22012.139904] AUTODETECT spr round 4 (radius: 20)
[08:06:07 -19085.588449] AUTODETECT spr round 5 (radius: 25)
[08:07:37] [worker #1] ML tree search #16, logLikelihood: -12486.310221
[08:08:10 -17527.378109] SPR radius for FAST iterations: 25 (autodetect)
[08:08:10 -17527.378109] Model parameter optimization (eps = 3.000000)
[08:08:25 -17505.867886] FAST spr round 1 (radius: 25)
[08:10:09 -13675.882627] FAST spr round 2 (radius: 25)
[08:11:31 -12985.981563] FAST spr round 3 (radius: 25)
[08:12:52 -12722.306532] FAST spr round 4 (radius: 25)
[08:14:10 -12645.642028] FAST spr round 5 (radius: 25)
[08:15:23 -12645.002162] FAST spr round 6 (radius: 25)
[08:16:36 -12645.000009] Model parameter optimization (eps = 1.000000)
[08:16:50 -12640.964155] SLOW spr round 1 (radius: 5)
[08:18:13 -12636.386409] SLOW spr round 2 (radius: 5)
[08:19:36 -12636.384927] SLOW spr round 3 (radius: 10)
[08:21:06 -12585.012625] SLOW spr round 4 (radius: 5)
[08:22:45 -12541.735262] SLOW spr round 5 (radius: 5)
[08:24:14 -12539.573138] SLOW spr round 6 (radius: 5)
[08:25:40 -12539.573029] SLOW spr round 7 (radius: 10)
[08:27:08 -12539.572894] SLOW spr round 8 (radius: 15)
[08:29:04 -12515.369010] SLOW spr round 9 (radius: 5)
[08:30:48 -12513.886636] SLOW spr round 10 (radius: 5)
[08:32:21 -12513.886578] SLOW spr round 11 (radius: 10)
[08:33:48 -12513.886563] SLOW spr round 12 (radius: 15)
[08:35:40 -12513.886563] SLOW spr round 13 (radius: 20)
[08:37:59 -12513.886563] SLOW spr round 14 (radius: 25)
[08:40:58 -12513.886563] Model parameter optimization (eps = 0.100000)

[08:41:08] [worker #0] ML tree search #17, logLikelihood: -12513.745827

[08:41:08 -100445.549050] Initial branch length optimization
[08:41:10 -81173.177874] Model parameter optimization (eps = 10.000000)
[08:41:37 -80907.564071] AUTODETECT spr round 1 (radius: 5)
[08:43:18 -39431.878964] AUTODETECT spr round 2 (radius: 10)
[08:44:55 -26805.546137] AUTODETECT spr round 3 (radius: 15)
[08:46:45 -20099.049450] AUTODETECT spr round 4 (radius: 20)
[08:48:49 -15965.944654] AUTODETECT spr round 5 (radius: 25)
[08:51:00 -15259.858799] SPR radius for FAST iterations: 25 (autodetect)
[08:51:00 -15259.858799] Model parameter optimization (eps = 3.000000)
[08:51:17 -15248.584736] FAST spr round 1 (radius: 25)
[08:52:52 -12901.002508] FAST spr round 2 (radius: 25)
[08:54:15 -12569.876589] FAST spr round 3 (radius: 25)
[08:55:33 -12540.580888] FAST spr round 4 (radius: 25)
[08:56:49 -12538.109005] FAST spr round 5 (radius: 25)
[08:57:27] [worker #1] ML tree search #18, logLikelihood: -12494.819103
[08:58:03 -12537.869029] FAST spr round 6 (radius: 25)
[08:59:17 -12537.868900] Model parameter optimization (eps = 1.000000)
[08:59:26 -12537.053438] SLOW spr round 1 (radius: 5)
[09:00:50 -12532.249836] SLOW spr round 2 (radius: 5)
[09:02:14 -12531.194275] SLOW spr round 3 (radius: 5)
[09:03:38 -12531.193769] SLOW spr round 4 (radius: 10)
[09:05:07 -12531.193493] SLOW spr round 5 (radius: 15)
[09:07:05 -12525.144694] SLOW spr round 6 (radius: 5)
[09:08:49 -12523.171957] SLOW spr round 7 (radius: 5)
[09:10:25 -12522.739814] SLOW spr round 8 (radius: 5)
[09:11:52 -12522.738317] SLOW spr round 9 (radius: 10)
[09:13:22 -12522.737961] SLOW spr round 10 (radius: 15)
[09:15:17 -12522.737843] SLOW spr round 11 (radius: 20)
[09:17:27 -12522.737826] SLOW spr round 12 (radius: 25)
[09:20:03 -12521.180458] SLOW spr round 13 (radius: 5)
[09:21:48 -12521.179346] SLOW spr round 14 (radius: 10)
[09:23:29 -12521.112081] SLOW spr round 15 (radius: 15)
[09:25:16 -12521.112078] SLOW spr round 16 (radius: 20)
[09:27:28 -12521.112078] SLOW spr round 17 (radius: 25)
[09:30:04 -12521.112078] Model parameter optimization (eps = 0.100000)

[09:30:13] [worker #0] ML tree search #19, logLikelihood: -12520.942627

[09:37:39] [worker #1] ML tree search #20, logLikelihood: -12511.333861

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.183957,0.195470) (0.332134,0.428678) (0.222745,0.715385) (0.261165,2.536006) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -12479.115991

AIC score: 28936.231983 / AICc score: 7945156.231983 / BIC score: 33794.665332
Free parameters (model + branch lengths): 1989

WARNING: Number of free parameters (K=1989) is larger than alignment size (n=85).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UPP2/3_mltree/Q9UPP2.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UPP2/3_mltree/Q9UPP2.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UPP2/3_mltree/Q9UPP2.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UPP2/3_mltree/Q9UPP2.raxml.log

Analysis started: 18-Jul-2021 00:26:41 / finished: 18-Jul-2021 10:04:21

Elapsed time: 34659.897 seconds