RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 18-Jul-2021 05:12:26 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UNN4/2_msa/Q9UNN4_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UNN4/3_mltree/Q9UNN4 --seed 2 --threads 2 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UNN4/2_msa/Q9UNN4_trimmed_msa.fasta
[00:00:00] Loaded alignment with 841 taxa and 97 sites

WARNING: Sequences tr_B4NTG8_B4NTG8_DROSI_7240 and tr_B4G3V6_B4G3V6_DROPE_7234 are exactly identical!
WARNING: Sequences tr_E9GM63_E9GM63_DAPPU_6669 and tr_A0A0P4YM85_A0A0P4YM85_9CRUS_35525 are exactly identical!
WARNING: Sequences tr_A1IIE6_A1IIE6_CHICK_9031 and tr_G3UTF9_G3UTF9_MELGA_9103 are exactly identical!
WARNING: Sequences tr_A1IIE6_A1IIE6_CHICK_9031 and tr_H0ZQ55_H0ZQ55_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_A1IIE6_A1IIE6_CHICK_9031 and tr_U3I481_U3I481_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_A1IIE6_A1IIE6_CHICK_9031 and tr_A0A091EI78_A0A091EI78_CORBR_85066 are exactly identical!
WARNING: Sequences tr_A1IIE6_A1IIE6_CHICK_9031 and tr_A0A091UQA8_A0A091UQA8_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A1IIE6_A1IIE6_CHICK_9031 and tr_A0A087R4Z8_A0A087R4Z8_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A1IIE6_A1IIE6_CHICK_9031 and tr_A0A093HJ20_A0A093HJ20_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A1IIE6_A1IIE6_CHICK_9031 and tr_A0A091XKQ4_A0A091XKQ4_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A1IIE6_A1IIE6_CHICK_9031 and tr_A0A091G1R5_A0A091G1R5_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A1IIE6_A1IIE6_CHICK_9031 and tr_A0A0A0A237_A0A0A0A237_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A1IIE6_A1IIE6_CHICK_9031 and tr_A0A091HPP2_A0A091HPP2_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A1IIE6_A1IIE6_CHICK_9031 and tr_A0A1V4KB19_A0A1V4KB19_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A1IIE6_A1IIE6_CHICK_9031 and tr_A0A218VE04_A0A218VE04_9PASE_299123 are exactly identical!
WARNING: Sequences sp_Q8R4I4_TF2AY_MOUSE_10090 and tr_A0A3Q0D2Q4_A0A3Q0D2Q4_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_M3YB68_M3YB68_MUSPF_9669 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_A0A2I3GQX3_A0A2I3GQX3_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_G1PWG1_G1PWG1_MYOLU_59463 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_G3QL68_G3QL68_GORGO_9595 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_H2NLY7_H2NLY7_PONAB_9601 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and sp_Q5RCU0_TF2AA_PONAB_9601 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_G1SMS4_G1SMS4_RABIT_9986 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_J9NWE1_J9NWE1_CANLF_9615 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_A0A2I3TKG9_A0A2I3TKG9_PANTR_9598 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_F7AIB5_F7AIB5_HORSE_9796 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_W5NY55_W5NY55_SHEEP_9940 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and sp_O08949_TF2AA_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_I3M6W4_I3M6W4_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_H0Y076_H0Y076_OTOGA_30611 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and sp_P52655_TF2AA_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_F7H5J8_F7H5J8_MACMU_9544 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_G3SMZ0_G3SMZ0_LOXAF_9785 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_F7IH84_F7IH84_CALJA_9483 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_F1SE01_F1SE01_PIG_9823 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_G1L572_G1L572_AILME_9646 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_G7PB41_G7PB41_MACFA_9541 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_F1MII0_F1MII0_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_L5JP22_L5JP22_PTEAL_9402 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_A0A2I2UZB4_A0A2I2UZB4_FELCA_9685 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_A0A096NRB8_A0A096NRB8_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_A0A0D9RGW3_A0A0D9RGW3_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_A0A1S3AEK2_A0A1S3AEK2_ERIEU_9365 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_A0A2K5P1M3_A0A2K5P1M3_CERAT_9531 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_A0A2K6AX07_A0A2K6AX07_MACNE_9545 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_A0A2K5Y8M6_A0A2K5Y8M6_MANLE_9568 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_A0A2R9BJ75_A0A2R9BJ75_PANPA_9597 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_A0A2U4A302_A0A2U4A302_TURTR_9739 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_A0A2U3ZVF8_A0A2U3ZVF8_ODORO_9708 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_A0A2U3XPN8_A0A2U3XPN8_LEPWE_9713 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_A0A2Y9RSR1_A0A2Y9RSR1_TRIMA_127582 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_A0A2Y9JKK1_A0A2Y9JKK1_ENHLU_391180 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_A0A2Y9NRU6_A0A2Y9NRU6_DELLE_9749 are exactly identical!
WARNING: Sequences sp_Q99PM3_TF2AA_MOUSE_10090 and tr_A0A2Y9TDD4_A0A2Y9TDD4_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A1Z5RP71_A0A1Z5RP71_SORBI_4558 and tr_A0A368QK57_A0A368QK57_SETIT_4555 are exactly identical!
WARNING: Sequences tr_A0A1Z5RP71_A0A1Z5RP71_SORBI_4558 and tr_A0A2T7EG07_A0A2T7EG07_9POAL_1504633 are exactly identical!
WARNING: Sequences sp_P52654_TF2AA_DROME_7227 and tr_B4JRU7_B4JRU7_DROGR_7222 are exactly identical!
WARNING: Sequences sp_P52654_TF2AA_DROME_7227 and tr_B4IC69_B4IC69_DROSE_7238 are exactly identical!
WARNING: Sequences sp_P52654_TF2AA_DROME_7227 and tr_A0A0Q9WGL3_A0A0Q9WGL3_DROVI_7244 are exactly identical!
WARNING: Sequences sp_P52654_TF2AA_DROME_7227 and tr_A0A0Q9X224_A0A0Q9X224_DROMO_7230 are exactly identical!
WARNING: Sequences sp_P52654_TF2AA_DROME_7227 and tr_A0A1W4UCV9_A0A1W4UCV9_DROFC_30025 are exactly identical!
WARNING: Sequences tr_A0A0E1S2P4_A0A0E1S2P4_COCIM_246410 and tr_E9CY39_E9CY39_COCPS_443226 are exactly identical!
WARNING: Sequences tr_A0A0E1S2P4_A0A0E1S2P4_COCIM_246410 and tr_A0A0J6YK16_A0A0J6YK16_COCIT_404692 are exactly identical!
WARNING: Sequences tr_B6QAX6_B6QAX6_TALMQ_441960 and tr_A0A093VF82_A0A093VF82_TALMA_1077442 are exactly identical!
WARNING: Sequences tr_B6QAX6_B6QAX6_TALMQ_441960 and tr_A0A2H3IR72_A0A2H3IR72_9EURO_290292 are exactly identical!
WARNING: Sequences tr_G3R9V5_G3R9V5_GORGO_9595 and tr_A0A2J8LLF9_A0A2J8LLF9_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3R9V5_G3R9V5_GORGO_9595 and sp_Q9UNN4_TF2AY_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3R9V5_G3R9V5_GORGO_9595 and tr_A0A1D5R6P6_A0A1D5R6P6_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G3R9V5_G3R9V5_GORGO_9595 and tr_A0A2I3LJM8_A0A2I3LJM8_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G3R9V5_G3R9V5_GORGO_9595 and tr_A0A0D9RMF7_A0A0D9RMF7_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G3R9V5_G3R9V5_GORGO_9595 and tr_A0A2K5KHK8_A0A2K5KHK8_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G3R9V5_G3R9V5_GORGO_9595 and tr_A0A2K6CEX9_A0A2K6CEX9_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G3R9V5_G3R9V5_GORGO_9595 and tr_A0A2R8ZQN3_A0A2R8ZQN3_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G2X8D5_G2X8D5_VERDV_498257 and tr_C9SQY7_C9SQY7_VERA1_526221 are exactly identical!
WARNING: Sequences tr_G2X8D5_G2X8D5_VERDV_498257 and tr_A0A0G4MB00_A0A0G4MB00_9PEZI_100787 are exactly identical!
WARNING: Sequences tr_G2X8D5_G2X8D5_VERDV_498257 and tr_A0A0G4MXE9_A0A0G4MXE9_9PEZI_100787 are exactly identical!
WARNING: Sequences tr_Q7SG05_Q7SG05_NEUCR_367110 and tr_G4UB39_G4UB39_NEUT9_510952 are exactly identical!
WARNING: Sequences tr_B8N3Z4_B8N3Z4_ASPFN_332952 and tr_Q2UL91_Q2UL91_ASPOR_510516 are exactly identical!
WARNING: Sequences tr_B8N3Z4_B8N3Z4_ASPFN_332952 and tr_A0A0F0IG73_A0A0F0IG73_ASPPU_1403190 are exactly identical!
WARNING: Sequences tr_B8N3Z4_B8N3Z4_ASPFN_332952 and tr_A0A0L1IXJ1_A0A0L1IXJ1_ASPNO_1509407 are exactly identical!
WARNING: Sequences tr_B8N3Z4_B8N3Z4_ASPFN_332952 and tr_A0A1F8AEF3_A0A1F8AEF3_9EURO_109264 are exactly identical!
WARNING: Sequences tr_B8N3Z4_B8N3Z4_ASPFN_332952 and tr_A0A1S9DMW7_A0A1S9DMW7_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_B8N3Z4_B8N3Z4_ASPFN_332952 and tr_A0A2G7FIH7_A0A2G7FIH7_9EURO_656916 are exactly identical!
WARNING: Sequences tr_A0A179UYK6_A0A179UYK6_BLAGS_559298 and tr_C5GKC0_C5GKC0_AJEDR_559297 are exactly identical!
WARNING: Sequences tr_A0A179UYK6_A0A179UYK6_BLAGS_559298 and tr_A6QYC3_A6QYC3_AJECN_339724 are exactly identical!
WARNING: Sequences tr_A0A179UYK6_A0A179UYK6_BLAGS_559298 and tr_A0A2B7X6X5_A0A2B7X6X5_9EURO_2060905 are exactly identical!
WARNING: Sequences tr_A0A179UYK6_A0A179UYK6_BLAGS_559298 and tr_A0A1J9R8Q3_A0A1J9R8Q3_9EURO_1658174 are exactly identical!
WARNING: Sequences tr_F7EVS0_F7EVS0_MONDO_13616 and tr_G3VCP5_G3VCP5_SARHA_9305 are exactly identical!
WARNING: Sequences tr_W5P392_W5P392_SHEEP_9940 and tr_F1MSE9_F1MSE9_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_F9FGR5_F9FGR5_FUSOF_660025 and tr_N4TDU3_N4TDU3_FUSC1_1229664 are exactly identical!
WARNING: Sequences tr_F9FGR5_F9FGR5_FUSOF_660025 and tr_X0CY17_X0CY17_FUSOX_1089458 are exactly identical!
WARNING: Sequences tr_F9FGR5_F9FGR5_FUSOF_660025 and tr_A0A2H3SVC4_A0A2H3SVC4_FUSOX_5507 are exactly identical!
WARNING: Sequences tr_E9EMY3_E9EMY3_METRA_655844 and tr_E9E8K5_E9E8K5_METAQ_655827 are exactly identical!
WARNING: Sequences tr_E9EMY3_E9EMY3_METRA_655844 and tr_A0A0B4IBP1_A0A0B4IBP1_METMF_1276143 are exactly identical!
WARNING: Sequences tr_E9EMY3_E9EMY3_METRA_655844 and tr_A0A0D9P0C1_A0A0D9P0C1_METAN_1291518 are exactly identical!
WARNING: Sequences tr_J5JYD9_J5JYD9_BEAB2_655819 and tr_A0A0A2VWQ1_A0A0A2VWQ1_BEABA_1245745 are exactly identical!
WARNING: Sequences tr_J5JYD9_J5JYD9_BEAB2_655819 and tr_A0A2N6NT90_A0A2N6NT90_BEABA_176275 are exactly identical!
WARNING: Sequences tr_A0A3B5R206_A0A3B5R206_XIPMA_8083 and tr_A0A087X670_A0A087X670_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A087ZQ42_A0A087ZQ42_APIME_7460 and tr_A0A0M9A2I0_A0A0M9A2I0_9HYME_166423 are exactly identical!
WARNING: Sequences tr_A0A087ZQ42_A0A087ZQ42_APIME_7460 and tr_A0A2A3E231_A0A2A3E231_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A158NUK7_A0A158NUK7_ATTCE_12957 and tr_A0A151JQC4_A0A151JQC4_9HYME_471704 are exactly identical!
WARNING: Sequences tr_A0A158NUK7_A0A158NUK7_ATTCE_12957 and tr_A0A195BFB8_A0A195BFB8_9HYME_520822 are exactly identical!
WARNING: Sequences tr_G9P9X6_G9P9X6_HYPAI_452589 and tr_A0A0F9ZYI2_A0A0F9ZYI2_TRIHA_5544 are exactly identical!
WARNING: Sequences tr_G9P9X6_G9P9X6_HYPAI_452589 and tr_A0A2P4Z8C7_A0A2P4Z8C7_9HYPO_398673 are exactly identical!
WARNING: Sequences tr_G9P9X6_G9P9X6_HYPAI_452589 and tr_A0A2T3Z730_A0A2T3Z730_9HYPO_1042311 are exactly identical!
WARNING: Sequences tr_G9P9X6_G9P9X6_HYPAI_452589 and tr_A0A2T4C8V4_A0A2T4C8V4_TRILO_983965 are exactly identical!
WARNING: Sequences tr_H0V0Q3_H0V0Q3_CAVPO_10141 and tr_G5AJS0_G5AJS0_HETGA_10181 are exactly identical!
WARNING: Sequences tr_H0V0Q3_H0V0Q3_CAVPO_10141 and tr_A0A091CKN0_A0A091CKN0_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_J3M5M8_J3M5M8_ORYBR_4533 and tr_A0A0D9WEP4_A0A0D9WEP4_9ORYZ_77586 are exactly identical!
WARNING: Sequences tr_A0A0E0HC02_A0A0E0HC02_ORYNI_4536 and tr_A2Y2S6_A2Y2S6_ORYSI_39946 are exactly identical!
WARNING: Sequences tr_A0A0E0HC02_A0A0E0HC02_ORYNI_4536 and tr_A0A0D3G5K0_A0A0D3G5K0_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_A0A0E0HC02_A0A0E0HC02_ORYNI_4536 and tr_A0A0E0L0M7_A0A0E0L0M7_ORYPU_4537 are exactly identical!
WARNING: Sequences tr_A0A0E0HC02_A0A0E0HC02_ORYNI_4536 and tr_Q0DJF8_Q0DJF8_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_A1CNY5_A1CNY5_ASPCL_344612 and tr_A0A0F8UGH2_A0A0F8UGH2_9EURO_308745 are exactly identical!
WARNING: Sequences tr_A1CNY5_A1CNY5_ASPCL_344612 and tr_A0A0K8LNH0_A0A0K8LNH0_9EURO_91492 are exactly identical!
WARNING: Sequences tr_A1D1U2_A1D1U2_NEOFI_331117 and tr_A0A0S7E2L3_A0A0S7E2L3_9EURO_293939 are exactly identical!
WARNING: Sequences tr_A1D1U2_A1D1U2_NEOFI_331117 and tr_A0A2I1C867_A0A2I1C867_9EURO_1392255 are exactly identical!
WARNING: Sequences tr_A2QAU3_A2QAU3_ASPNC_425011 and tr_G7XIC6_G7XIC6_ASPKW_1033177 are exactly identical!
WARNING: Sequences tr_A2QAU3_A2QAU3_ASPNC_425011 and tr_A0A117DW75_A0A117DW75_ASPNG_5061 are exactly identical!
WARNING: Sequences tr_A2QAU3_A2QAU3_ASPNC_425011 and tr_A0A146FB88_A0A146FB88_9EURO_1069201 are exactly identical!
WARNING: Sequences tr_A2QAU3_A2QAU3_ASPNC_425011 and tr_A0A317WDS5_A0A317WDS5_9EURO_1448314 are exactly identical!
WARNING: Sequences tr_A2QAU3_A2QAU3_ASPNC_425011 and tr_A0A319AB37_A0A319AB37_9EURO_1450533 are exactly identical!
WARNING: Sequences tr_E5S2I3_E5S2I3_TRISP_6334 and tr_A0A0V0S4X2_A0A0V0S4X2_9BILA_6336 are exactly identical!
WARNING: Sequences tr_E5S2I3_E5S2I3_TRISP_6334 and tr_A0A0V0U5N2_A0A0V0U5N2_9BILA_144512 are exactly identical!
WARNING: Sequences tr_G9MIK7_G9MIK7_HYPVG_413071 and tr_G0RNN2_G0RNN2_HYPJQ_431241 are exactly identical!
WARNING: Sequences tr_G9MIK7_G9MIK7_HYPVG_413071 and tr_A0A2T4BHQ6_A0A2T4BHQ6_9HYPO_58853 are exactly identical!
WARNING: Sequences tr_K7FYS8_K7FYS8_PELSI_13735 and tr_A0A151M5G2_A0A151M5G2_ALLMI_8496 are exactly identical!
WARNING: Sequences tr_K7FYS8_K7FYS8_PELSI_13735 and tr_A0A3Q0FYN1_A0A3Q0FYN1_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_E6RG06_E6RG06_CRYGW_367775 and tr_A0A095CFS3_A0A095CFS3_CRYGR_294750 are exactly identical!
WARNING: Sequences tr_A0A0E0PK66_A0A0E0PK66_ORYRU_4529 and tr_A0A0D9ZWS9_A0A0D9ZWS9_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_E3LP02_E3LP02_CAERE_31234 and tr_A0A261BML1_A0A261BML1_9PELO_1503980 are exactly identical!
WARNING: Sequences tr_A8X6V8_A8X6V8_CAEBR_6238 and tr_A0A2G5TFA3_A0A2G5TFA3_9PELO_1611254 are exactly identical!
WARNING: Sequences tr_F2SX09_F2SX09_TRIRC_559305 and tr_F2PVT8_F2PVT8_TRIEC_559882 are exactly identical!
WARNING: Sequences tr_F2SX09_F2SX09_TRIRC_559305 and tr_A0A059IZR6_A0A059IZR6_9EURO_1215338 are exactly identical!
WARNING: Sequences tr_F2SX09_F2SX09_TRIRC_559305 and tr_A0A178F9Y3_A0A178F9Y3_TRIRU_5551 are exactly identical!
WARNING: Sequences tr_W7LD91_W7LD91_GIBM7_334819 and tr_S0DK85_S0DK85_GIBF5_1279085 are exactly identical!
WARNING: Sequences tr_W7LD91_W7LD91_GIBM7_334819 and tr_A0A2K0VUF1_A0A2K0VUF1_GIBNY_42673 are exactly identical!
WARNING: Sequences tr_K9G6F8_K9G6F8_PEND2_1170229 and tr_A0A0A2L4V1_A0A0A2L4V1_PENIT_40296 are exactly identical!
WARNING: Sequences tr_K9G6F8_K9G6F8_PEND2_1170229 and tr_A0A0A2K4R1_A0A0A2K4R1_PENEN_27334 are exactly identical!
WARNING: Sequences tr_K9G6F8_K9G6F8_PEND2_1170229 and tr_W6QDC2_W6QDC2_PENRF_1365484 are exactly identical!
WARNING: Sequences tr_K9G6F8_K9G6F8_PEND2_1170229 and tr_A0A0M8PHP9_A0A0M8PHP9_9EURO_229535 are exactly identical!
WARNING: Sequences tr_K9G6F8_K9G6F8_PEND2_1170229 and tr_A0A0G4PEU2_A0A0G4PEU2_PENCA_1429867 are exactly identical!
WARNING: Sequences tr_K9G6F8_K9G6F8_PEND2_1170229 and tr_A0A101MRI4_A0A101MRI4_9EURO_48697 are exactly identical!
WARNING: Sequences tr_K9G6F8_K9G6F8_PEND2_1170229 and tr_A0A135LNR7_A0A135LNR7_PENPA_5078 are exactly identical!
WARNING: Sequences tr_K9G6F8_K9G6F8_PEND2_1170229 and tr_A0A1V6RM77_A0A1V6RM77_9EURO_29845 are exactly identical!
WARNING: Sequences tr_K9G6F8_K9G6F8_PEND2_1170229 and tr_A0A1V6QU85_A0A1V6QU85_9EURO_60172 are exactly identical!
WARNING: Sequences tr_L2FR89_L2FR89_COLFN_1213859 and tr_T0KFI6_T0KFI6_COLGC_1237896 are exactly identical!
WARNING: Sequences tr_S2JP08_S2JP08_MUCC1_1220926 and tr_A0A0C9MIL1_A0A0C9MIL1_9FUNG_91626 are exactly identical!
WARNING: Sequences tr_U3KDF4_U3KDF4_FICAL_59894 and tr_A0A2I0MNB0_A0A2I0MNB0_COLLI_8932 are exactly identical!
WARNING: Sequences tr_M2SRB5_M2SRB5_COCSN_665912 and tr_M2SNK8_M2SNK8_COCH5_701091 are exactly identical!
WARNING: Sequences tr_M2SRB5_M2SRB5_COCSN_665912 and tr_W6ZST2_W6ZST2_COCMI_930090 are exactly identical!
WARNING: Sequences tr_V2YHU3_V2YHU3_MONRO_1381753 and tr_A0A0W0G0C0_A0A0W0G0C0_9AGAR_221103 are exactly identical!
WARNING: Sequences tr_W9WBC3_W9WBC3_9EURO_1182544 and tr_A0A0D2E761_A0A0D2E761_9EURO_5601 are exactly identical!
WARNING: Sequences tr_A0A017SQ20_A0A017SQ20_9EURO_1388766 and tr_A0A1L9VUT0_A0A1L9VUT0_ASPGL_1160497 are exactly identical!
WARNING: Sequences tr_A0A010RF34_A0A010RF34_9PEZI_1445577 and tr_A0A135VAL8_A0A135VAL8_9PEZI_1209931 are exactly identical!
WARNING: Sequences tr_A0A010RF34_A0A010RF34_9PEZI_1445577 and tr_A0A1G4B7P4_A0A1G4B7P4_9PEZI_1209926 are exactly identical!
WARNING: Sequences tr_A0A015JS43_A0A015JS43_9GLOM_1432141 and tr_A0A2I1FYB3_A0A2I1FYB3_9GLOM_588596 are exactly identical!
WARNING: Sequences tr_A0A084QNH7_A0A084QNH7_STAC4_1283841 and tr_A0A084RA70_A0A084RA70_STACH_1283842 are exactly identical!
WARNING: Sequences tr_A0A094EXB3_A0A094EXB3_9PEZI_1420910 and tr_A0A1B8E6N4_A0A1B8E6N4_9PEZI_1524831 are exactly identical!
WARNING: Sequences tr_A0A094EGY1_A0A094EGY1_9PEZI_1420912 and tr_A0A2P2SWN6_A0A2P2SWN6_9PEZI_342668 are exactly identical!
WARNING: Sequences tr_A0A094EGY1_A0A094EGY1_9PEZI_1420912 and tr_A0A1B8EUG9_A0A1B8EUG9_9PEZI_1622149 are exactly identical!
WARNING: Sequences tr_A0A0B2WRT3_A0A0B2WRT3_METAS_1081103 and tr_A0A167GPT4_A0A167GPT4_9HYPO_1081105 are exactly identical!
WARNING: Sequences tr_A0A0F4GHU0_A0A0F4GHU0_9PEZI_1047168 and tr_A0A1X7RCN3_A0A1X7RCN3_ZYMTR_1276538 are exactly identical!
WARNING: Sequences tr_A0A0K0FYG9_A0A0K0FYG9_STRVS_75913 and tr_A0A0K0E3L5_A0A0K0E3L5_STRER_6248 are exactly identical!
WARNING: Sequences tr_A0A0K0FYG9_A0A0K0FYG9_STRVS_75913 and tr_A0A090LMQ5_A0A090LMQ5_STRRB_34506 are exactly identical!
WARNING: Sequences tr_A0A0K0FYG9_A0A0K0FYG9_STRVS_75913 and tr_A0A0N5B8E5_A0A0N5B8E5_STREA_174720 are exactly identical!
WARNING: Sequences tr_A0A0F7VEP2_A0A0F7VEP2_9EURO_104259 and tr_A0A1Q5U1A7_A0A1Q5U1A7_9EURO_1316194 are exactly identical!
WARNING: Sequences tr_A0A0K6FS23_A0A0K6FS23_9HOMO_456999 and tr_A0A0K6GDL4_A0A0K6GDL4_9HOMO_456999 are exactly identical!
WARNING: Sequences tr_A0A0N1IGC3_A0A0N1IGC3_PAPMA_76193 and tr_A0A194PEI0_A0A194PEI0_PAPXU_66420 are exactly identical!
WARNING: Sequences tr_A0A093H751_A0A093H751_STRCA_441894 and tr_A0A099Z293_A0A099Z293_TINGU_94827 are exactly identical!
WARNING: Sequences tr_A0A2I0LVI8_A0A2I0LVI8_COLLI_8932 and tr_A0A1V4KDR1_A0A1V4KDR1_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A0V1CXE1_A0A0V1CXE1_TRIBR_45882 and tr_A0A0V0WZ11_A0A0V0WZ11_9BILA_92179 are exactly identical!
WARNING: Sequences tr_A0A0V1CXE1_A0A0V1CXE1_TRIBR_45882 and tr_A0A0V0VIE7_A0A0V0VIE7_9BILA_181606 are exactly identical!
WARNING: Sequences tr_A0A0V1CXE1_A0A0V1CXE1_TRIBR_45882 and tr_A0A0V1LTE5_A0A0V1LTE5_9BILA_6335 are exactly identical!
WARNING: Sequences tr_A0A0V1CXE1_A0A0V1CXE1_TRIBR_45882 and tr_A0A0V1NTC7_A0A0V1NTC7_9BILA_92180 are exactly identical!
WARNING: Sequences tr_A0A0V1MZJ0_A0A0V1MZJ0_9BILA_268474 and tr_A0A0V1H292_A0A0V1H292_9BILA_268475 are exactly identical!
WARNING: Sequences tr_A0A0P1BBA7_A0A0P1BBA7_9BASI_401625 and tr_A0A316W027_A0A316W027_9BASI_1522189 are exactly identical!
WARNING: Sequences tr_A0A0E0RN05_A0A0E0RN05_GIBZE_229533 and tr_A0A2T4H9M5_A0A2T4H9M5_FUSCU_5516 are exactly identical!
WARNING: Sequences tr_A0A166MQM4_A0A166MQM4_9PEZI_708197 and tr_A0A167E1H8_A0A167E1H8_9PEZI_1573173 are exactly identical!
WARNING: Sequences tr_A0A194W2U7_A0A194W2U7_9PEZI_105487 and tr_A0A194V939_A0A194V939_9PEZI_694573 are exactly identical!
WARNING: Sequences tr_A0A1S3EY79_A0A1S3EY79_DIPOR_10020 and tr_A0A384CR46_A0A384CR46_URSMA_29073 are exactly identical!
WARNING: Sequences tr_A0A1S3EY79_A0A1S3EY79_DIPOR_10020 and tr_A0A384AN68_A0A384AN68_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A0A1S3MC03_A0A1S3MC03_SALSA_8030 and tr_A0A1S3SB26_A0A1S3SB26_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3MC03_A0A1S3MC03_SALSA_8030 and tr_A0A060XR41_A0A060XR41_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1B7MZA7_A0A1B7MZA7_9HOMO_1314800 and tr_A0A1J8Q7H6_A0A1J8Q7H6_9HOMO_180088 are exactly identical!
WARNING: Sequences tr_A0A1V8UK06_A0A1V8UK06_9PEZI_1974281 and tr_A0A1V8SBV1_A0A1V8SBV1_9PEZI_1507870 are exactly identical!
WARNING: Sequences tr_A0A1V8USJ2_A0A1V8USJ2_9PEZI_1974281 and tr_A0A1V8SCQ8_A0A1V8SCQ8_9PEZI_1507870 are exactly identical!
WARNING: Sequences tr_A0A229WTI1_A0A229WTI1_9EURO_1245748 and tr_A0A397G7G8_A0A397G7G8_9EURO_41047 are exactly identical!
WARNING: Sequences tr_A0A229WTI1_A0A229WTI1_9EURO_1245748 and tr_A0A319DVL2_A0A319DVL2_9EURO_1448320 are exactly identical!
WARNING: Sequences tr_A0A229WTI1_A0A229WTI1_9EURO_1245748 and tr_A0A318ZDS4_A0A318ZDS4_9EURO_1450539 are exactly identical!
WARNING: Sequences tr_A0A2H3DNU3_A0A2H3DNU3_ARMGA_47427 and tr_A0A2H3BVF3_A0A2H3BVF3_9AGAR_1076256 are exactly identical!
WARNING: Sequences tr_A0A2H3DNU3_A0A2H3DNU3_ARMGA_47427 and tr_A0A284QL47_A0A284QL47_9AGAR_47428 are exactly identical!
WARNING: Sequences tr_A0A2G5IEF3_A0A2G5IEF3_CERBT_122368 and tr_A0A2I0S159_A0A2I0S159_9PEZI_348901 are exactly identical!
WARNING: Sequences tr_A0A2G5IEF3_A0A2G5IEF3_CERBT_122368 and tr_A0A2S6C0A3_A0A2S6C0A3_9PEZI_357750 are exactly identical!
WARNING: Sequences tr_A0A2I2F3S7_A0A2I2F3S7_9EURO_41067 and tr_A0A2J5HTL9_A0A2J5HTL9_9EURO_482145 are exactly identical!
WARNING: Sequences tr_A0A2G4T6E2_A0A2G4T6E2_9FUNG_1340429 and tr_A0A367JM26_A0A367JM26_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A2U4C0C8_A0A2U4C0C8_TURTR_9739 and tr_A0A2Y9N9J6_A0A2Y9N9J6_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U3YM50_A0A2U3YM50_LEPWE_9713 and tr_A0A384CT97_A0A384CT97_URSMA_29073 are exactly identical!
WARNING: Sequences tr_A0A319DTA0_A0A319DTA0_9EURO_1448318 and tr_A0A395HGC8_A0A395HGC8_9EURO_1448316 are exactly identical!
WARNING: Sequences tr_A0A369GKF0_A0A369GKF0_9HYPO_2039875 and tr_A0A367LDZ6_A0A367LDZ6_9HYPO_1330021 are exactly identical!
WARNING: Sequences tr_A0A367Y237_A0A367Y237_9ASCO_5486 and tr_A0A367Y967_A0A367Y967_9ASCO_5486 are exactly identical!
WARNING: Duplicate sequences found: 201

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UNN4/3_mltree/Q9UNN4.raxml.reduced.phy

Alignment comprises 1 partitions and 97 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 97 / 97
Gaps: 4.18 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UNN4/3_mltree/Q9UNN4.raxml.rba

Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 841 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 97 / 7760
[00:00:00] Data distribution: max. searches per worker: 10

Starting ML tree search with 20 distinct starting trees

[00:00:00 -114505.670888] Initial branch length optimization
[00:00:03 -95763.899172] Model parameter optimization (eps = 10.000000)
[00:00:31 -95109.510988] AUTODETECT spr round 1 (radius: 5)
[00:01:56 -63608.864831] AUTODETECT spr round 2 (radius: 10)
[00:03:30 -44508.956563] AUTODETECT spr round 3 (radius: 15)
[00:05:15 -34301.749440] AUTODETECT spr round 4 (radius: 20)
[00:06:58 -30489.153911] AUTODETECT spr round 5 (radius: 25)
[00:08:42 -29889.251702] SPR radius for FAST iterations: 25 (autodetect)
[00:08:42 -29889.251702] Model parameter optimization (eps = 3.000000)
[00:08:59 -29837.767006] FAST spr round 1 (radius: 25)
[00:10:25 -25937.507756] FAST spr round 2 (radius: 25)
[00:11:38 -25612.806949] FAST spr round 3 (radius: 25)
[00:12:48 -25588.617252] FAST spr round 4 (radius: 25)
[00:13:52 -25583.195398] FAST spr round 5 (radius: 25)
[00:14:54 -25582.785521] FAST spr round 6 (radius: 25)
[00:15:55 -25582.784934] Model parameter optimization (eps = 1.000000)
[00:16:10 -25579.988690] SLOW spr round 1 (radius: 5)
[00:17:24 -25569.433214] SLOW spr round 2 (radius: 5)
[00:18:39 -25569.228612] SLOW spr round 3 (radius: 5)
[00:19:55 -25568.203308] SLOW spr round 4 (radius: 5)
[00:21:11 -25568.202989] SLOW spr round 5 (radius: 10)
[00:22:31 -25563.721809] SLOW spr round 6 (radius: 5)
[00:24:05 -25563.720621] SLOW spr round 7 (radius: 10)
[00:25:33 -25563.040128] SLOW spr round 8 (radius: 5)
[00:27:05 -25562.757850] SLOW spr round 9 (radius: 5)
[00:28:27 -25562.757826] SLOW spr round 10 (radius: 10)
[00:29:48 -25562.757801] SLOW spr round 11 (radius: 15)
[00:31:41 -25561.784965] SLOW spr round 12 (radius: 5)
[00:33:20 -25559.851205] SLOW spr round 13 (radius: 5)
[00:34:12] [worker #1] ML tree search #2, logLikelihood: -25504.657935
[00:34:46 -25559.851065] SLOW spr round 14 (radius: 10)
[00:36:07 -25559.539943] SLOW spr round 15 (radius: 5)
[00:37:41 -25558.789450] SLOW spr round 16 (radius: 5)
[00:39:04 -25558.787710] SLOW spr round 17 (radius: 10)
[00:40:24 -25558.787541] SLOW spr round 18 (radius: 15)
[00:42:18 -25558.787500] SLOW spr round 19 (radius: 20)
[00:44:50 -25558.557651] SLOW spr round 20 (radius: 5)
[00:46:31 -25557.742424] SLOW spr round 21 (radius: 5)
[00:47:59 -25557.742236] SLOW spr round 22 (radius: 10)
[00:49:22 -25557.742220] SLOW spr round 23 (radius: 15)
[00:51:13 -25557.742206] SLOW spr round 24 (radius: 20)
[00:53:46 -25557.742192] SLOW spr round 25 (radius: 25)
[00:56:41 -25557.742178] Model parameter optimization (eps = 0.100000)

[00:56:52] [worker #0] ML tree search #1, logLikelihood: -25557.527266

[00:56:52 -115070.163276] Initial branch length optimization
[00:56:54 -95612.161119] Model parameter optimization (eps = 10.000000)
[00:57:20 -94906.719046] AUTODETECT spr round 1 (radius: 5)
[00:58:42 -64089.006674] AUTODETECT spr round 2 (radius: 10)
[01:00:13 -46719.277371] AUTODETECT spr round 3 (radius: 15)
[01:01:58 -35158.078211] AUTODETECT spr round 4 (radius: 20)
[01:03:41 -30799.110357] AUTODETECT spr round 5 (radius: 25)
[01:05:31 -29885.238149] SPR radius for FAST iterations: 25 (autodetect)
[01:05:31 -29885.238149] Model parameter optimization (eps = 3.000000)
[01:05:49 -29859.239741] FAST spr round 1 (radius: 25)
[01:07:19 -25864.047229] FAST spr round 2 (radius: 25)
[01:08:36 -25599.118924] FAST spr round 3 (radius: 25)
[01:09:45 -25562.146205] FAST spr round 4 (radius: 25)
[01:10:50 -25558.374687] FAST spr round 5 (radius: 25)
[01:11:28] [worker #1] ML tree search #4, logLikelihood: -25506.331281
[01:11:52 -25558.374605] Model parameter optimization (eps = 1.000000)
[01:12:01 -25556.974847] SLOW spr round 1 (radius: 5)
[01:13:19 -25550.869013] SLOW spr round 2 (radius: 5)
[01:14:36 -25549.447715] SLOW spr round 3 (radius: 5)
[01:15:50 -25549.447584] SLOW spr round 4 (radius: 10)
[01:17:09 -25543.464262] SLOW spr round 5 (radius: 5)
[01:18:45 -25542.048829] SLOW spr round 6 (radius: 5)
[01:20:12 -25542.048494] SLOW spr round 7 (radius: 10)
[01:21:33 -25539.359694] SLOW spr round 8 (radius: 5)
[01:23:08 -25538.717210] SLOW spr round 9 (radius: 5)
[01:24:31 -25538.716363] SLOW spr round 10 (radius: 10)
[01:25:52 -25538.716308] SLOW spr round 11 (radius: 15)
[01:27:46 -25535.325803] SLOW spr round 12 (radius: 5)
[01:29:23 -25535.324175] SLOW spr round 13 (radius: 10)
[01:30:52 -25535.323123] SLOW spr round 14 (radius: 15)
[01:32:41 -25535.322166] SLOW spr round 15 (radius: 20)
[01:35:08 -25535.321244] SLOW spr round 16 (radius: 25)
[01:37:57 -25535.320347] Model parameter optimization (eps = 0.100000)

[01:38:02] [worker #0] ML tree search #3, logLikelihood: -25535.231861

[01:38:02 -114890.693173] Initial branch length optimization
[01:38:05 -96024.274440] Model parameter optimization (eps = 10.000000)
[01:38:38 -95254.035233] AUTODETECT spr round 1 (radius: 5)
[01:40:00 -61907.833041] AUTODETECT spr round 2 (radius: 10)
[01:41:27 -45625.963931] AUTODETECT spr round 3 (radius: 15)
[01:43:06 -37994.236943] AUTODETECT spr round 4 (radius: 20)
[01:44:52 -32574.984616] AUTODETECT spr round 5 (radius: 25)
[01:46:42 -31748.038136] SPR radius for FAST iterations: 25 (autodetect)
[01:46:42 -31748.038136] Model parameter optimization (eps = 3.000000)
[01:46:59 -31718.508270] FAST spr round 1 (radius: 25)
[01:48:31 -26086.807119] FAST spr round 2 (radius: 25)
[01:49:49 -25721.203299] FAST spr round 3 (radius: 25)
[01:51:01 -25633.131349] FAST spr round 4 (radius: 25)
[01:52:06 -25632.209413] FAST spr round 5 (radius: 25)
[01:53:10 -25630.274447] FAST spr round 6 (radius: 25)
[01:54:12 -25630.274414] Model parameter optimization (eps = 1.000000)
[01:54:19 -25626.807731] SLOW spr round 1 (radius: 5)
[01:55:36 -25618.743818] SLOW spr round 2 (radius: 5)
[01:56:00] [worker #1] ML tree search #6, logLikelihood: -25545.352894
[01:56:52 -25615.470814] SLOW spr round 3 (radius: 5)
[01:58:06 -25615.448397] SLOW spr round 4 (radius: 10)
[01:59:25 -25613.260491] SLOW spr round 5 (radius: 5)
[02:00:59 -25612.572494] SLOW spr round 6 (radius: 5)
[02:02:23 -25612.572248] SLOW spr round 7 (radius: 10)
[02:03:45 -25604.399604] SLOW spr round 8 (radius: 5)
[02:05:20 -25602.054255] SLOW spr round 9 (radius: 5)
[02:06:44 -25602.053201] SLOW spr round 10 (radius: 10)
[02:08:04 -25602.052990] SLOW spr round 11 (radius: 15)
[02:09:53 -25602.052886] SLOW spr round 12 (radius: 20)
[02:12:17 -25592.311910] SLOW spr round 13 (radius: 5)
[02:13:59 -25589.425425] SLOW spr round 14 (radius: 5)
[02:15:28 -25586.201280] SLOW spr round 15 (radius: 5)
[02:16:48 -25586.201014] SLOW spr round 16 (radius: 10)
[02:18:07 -25586.200995] SLOW spr round 17 (radius: 15)
[02:20:01 -25585.879651] SLOW spr round 18 (radius: 5)
[02:21:40 -25585.699656] SLOW spr round 19 (radius: 5)
[02:23:06 -25585.698907] SLOW spr round 20 (radius: 10)
[02:24:27 -25585.698893] SLOW spr round 21 (radius: 15)
[02:26:19 -25585.698890] SLOW spr round 22 (radius: 20)
[02:28:51 -25585.698888] SLOW spr round 23 (radius: 25)
[02:31:40 -25585.698885] Model parameter optimization (eps = 0.100000)

[02:31:49] [worker #0] ML tree search #5, logLikelihood: -25583.821684

[02:31:49 -115436.223990] Initial branch length optimization
[02:31:52 -96508.234367] Model parameter optimization (eps = 10.000000)
[02:32:15 -95814.419070] AUTODETECT spr round 1 (radius: 5)
[02:33:39 -64914.622149] AUTODETECT spr round 2 (radius: 10)
[02:35:11 -46255.504841] AUTODETECT spr round 3 (radius: 15)
[02:36:48 -39716.879445] AUTODETECT spr round 4 (radius: 20)
[02:38:46 -32268.776739] AUTODETECT spr round 5 (radius: 25)
[02:40:30 -30527.313557] SPR radius for FAST iterations: 25 (autodetect)
[02:40:30 -30527.313557] Model parameter optimization (eps = 3.000000)
[02:40:48 -30487.437660] FAST spr round 1 (radius: 25)
[02:42:18] [worker #1] ML tree search #8, logLikelihood: -25531.729905
[02:42:21 -26250.586573] FAST spr round 2 (radius: 25)
[02:43:35 -25592.580967] FAST spr round 3 (radius: 25)
[02:44:45 -25534.186633] FAST spr round 4 (radius: 25)
[02:45:50 -25529.361870] FAST spr round 5 (radius: 25)
[02:46:53 -25527.792621] FAST spr round 6 (radius: 25)
[02:47:54 -25527.792364] Model parameter optimization (eps = 1.000000)
[02:48:04 -25526.463272] SLOW spr round 1 (radius: 5)
[02:49:19 -25520.311114] SLOW spr round 2 (radius: 5)
[02:50:37 -25517.178001] SLOW spr round 3 (radius: 5)
[02:51:54 -25510.595538] SLOW spr round 4 (radius: 5)
[02:53:09 -25510.595265] SLOW spr round 5 (radius: 10)
[02:54:28 -25509.830233] SLOW spr round 6 (radius: 5)
[02:56:04 -25509.547178] SLOW spr round 7 (radius: 5)
[02:57:28 -25509.547166] SLOW spr round 8 (radius: 10)
[02:58:50 -25509.547158] SLOW spr round 9 (radius: 15)
[03:00:47 -25506.478501] SLOW spr round 10 (radius: 5)
[03:02:25 -25506.478481] SLOW spr round 11 (radius: 10)
[03:03:55 -25503.970601] SLOW spr round 12 (radius: 5)
[03:05:27 -25503.970513] SLOW spr round 13 (radius: 10)
[03:06:52 -25503.970509] SLOW spr round 14 (radius: 15)
[03:08:45 -25503.970507] SLOW spr round 15 (radius: 20)
[03:11:19 -25503.970505] SLOW spr round 16 (radius: 25)
[03:14:11 -25503.970503] Model parameter optimization (eps = 0.100000)

[03:14:18] [worker #0] ML tree search #7, logLikelihood: -25503.865472

[03:14:18 -114342.103045] Initial branch length optimization
[03:14:21 -94951.479581] Model parameter optimization (eps = 10.000000)
[03:14:46 -94234.298917] AUTODETECT spr round 1 (radius: 5)
[03:16:08 -63384.855371] AUTODETECT spr round 2 (radius: 10)
[03:17:36 -45206.640880] AUTODETECT spr round 3 (radius: 15)
[03:19:15 -35449.693884] AUTODETECT spr round 4 (radius: 20)
[03:20:59 -31600.138382] AUTODETECT spr round 5 (radius: 25)
[03:22:53 -30425.024008] SPR radius for FAST iterations: 25 (autodetect)
[03:22:53 -30425.024008] Model parameter optimization (eps = 3.000000)
[03:23:12 -30384.874409] FAST spr round 1 (radius: 25)
[03:24:42 -26038.768794] FAST spr round 2 (radius: 25)
[03:25:56 -25660.273565] FAST spr round 3 (radius: 25)
[03:27:07 -25632.349659] FAST spr round 4 (radius: 25)
[03:28:14 -25626.738536] FAST spr round 5 (radius: 25)
[03:29:03] [worker #1] ML tree search #10, logLikelihood: -25520.603537
[03:29:18 -25625.401200] FAST spr round 6 (radius: 25)
[03:30:21 -25625.401073] Model parameter optimization (eps = 1.000000)
[03:30:33 -25619.100111] SLOW spr round 1 (radius: 5)
[03:31:50 -25614.246502] SLOW spr round 2 (radius: 5)
[03:33:08 -25610.914927] SLOW spr round 3 (radius: 5)
[03:34:26 -25610.588138] SLOW spr round 4 (radius: 5)
[03:35:44 -25610.587878] SLOW spr round 5 (radius: 10)
[03:37:05 -25609.084416] SLOW spr round 6 (radius: 5)
[03:38:40 -25607.936604] SLOW spr round 7 (radius: 5)
[03:40:07 -25607.936574] SLOW spr round 8 (radius: 10)
[03:41:30 -25607.936490] SLOW spr round 9 (radius: 15)
[03:43:20 -25607.584861] SLOW spr round 10 (radius: 5)
[03:45:01 -25607.584778] SLOW spr round 11 (radius: 10)
[03:46:33 -25607.584685] SLOW spr round 12 (radius: 15)
[03:48:20 -25607.584685] SLOW spr round 13 (radius: 20)
[03:50:42 -25607.314379] SLOW spr round 14 (radius: 5)
[03:52:25 -25606.494929] SLOW spr round 15 (radius: 5)
[03:53:54 -25606.494751] SLOW spr round 16 (radius: 10)
[03:55:19 -25606.494731] SLOW spr round 17 (radius: 15)
[03:57:07 -25606.494731] SLOW spr round 18 (radius: 20)
[03:59:28 -25606.494731] SLOW spr round 19 (radius: 25)
[04:02:20 -25606.476346] Model parameter optimization (eps = 0.100000)

[04:02:27] [worker #0] ML tree search #9, logLikelihood: -25606.244828

[04:02:27 -115835.783815] Initial branch length optimization
[04:02:29 -96344.562869] Model parameter optimization (eps = 10.000000)
[04:02:57 -95644.559302] AUTODETECT spr round 1 (radius: 5)
[04:04:23 -64687.502875] AUTODETECT spr round 2 (radius: 10)
[04:05:56 -47658.516068] AUTODETECT spr round 3 (radius: 15)
[04:07:31 -38583.542673] AUTODETECT spr round 4 (radius: 20)
[04:09:17 -32516.439756] AUTODETECT spr round 5 (radius: 25)
[04:10:23] [worker #1] ML tree search #12, logLikelihood: -25519.722013
[04:11:33 -31199.437389] SPR radius for FAST iterations: 25 (autodetect)
[04:11:33 -31199.437389] Model parameter optimization (eps = 3.000000)
[04:11:50 -31163.337966] FAST spr round 1 (radius: 25)
[04:13:22 -26012.778481] FAST spr round 2 (radius: 25)
[04:14:37 -25633.363558] FAST spr round 3 (radius: 25)
[04:15:45 -25597.983649] FAST spr round 4 (radius: 25)
[04:16:49 -25597.200621] FAST spr round 5 (radius: 25)
[04:17:52 -25595.785779] FAST spr round 6 (radius: 25)
[04:18:54 -25595.785484] Model parameter optimization (eps = 1.000000)
[04:19:03 -25591.851874] SLOW spr round 1 (radius: 5)
[04:20:19 -25578.455026] SLOW spr round 2 (radius: 5)
[04:21:35 -25571.396860] SLOW spr round 3 (radius: 5)
[04:22:51 -25569.043461] SLOW spr round 4 (radius: 5)
[04:24:08 -25566.393714] SLOW spr round 5 (radius: 5)
[04:25:25 -25565.590323] SLOW spr round 6 (radius: 5)
[04:26:41 -25565.273625] SLOW spr round 7 (radius: 5)
[04:27:57 -25565.273451] SLOW spr round 8 (radius: 10)
[04:29:15 -25565.273314] SLOW spr round 9 (radius: 15)
[04:31:07 -25563.052000] SLOW spr round 10 (radius: 5)
[04:32:48 -25559.639417] SLOW spr round 11 (radius: 5)
[04:34:16 -25559.639093] SLOW spr round 12 (radius: 10)
[04:35:39 -25557.062136] SLOW spr round 13 (radius: 5)
[04:37:14 -25554.189542] SLOW spr round 14 (radius: 5)
[04:38:38 -25553.846356] SLOW spr round 15 (radius: 5)
[04:39:57 -25553.846341] SLOW spr round 16 (radius: 10)
[04:41:17 -25553.846304] SLOW spr round 17 (radius: 15)
[04:43:05 -25553.846294] SLOW spr round 18 (radius: 20)
[04:45:20 -25553.846278] SLOW spr round 19 (radius: 25)
[04:47:51 -25553.846278] Model parameter optimization (eps = 0.100000)

[04:47:58] [worker #0] ML tree search #11, logLikelihood: -25553.507268

[04:47:58 -114669.972649] Initial branch length optimization
[04:48:01 -95030.147936] Model parameter optimization (eps = 10.000000)
[04:48:25 -94318.759644] AUTODETECT spr round 1 (radius: 5)
[04:49:50 -62661.673921] AUTODETECT spr round 2 (radius: 10)
[04:51:22 -47085.159883] AUTODETECT spr round 3 (radius: 15)
[04:53:04 -36083.945757] AUTODETECT spr round 4 (radius: 20)
[04:54:44 -31081.840400] AUTODETECT spr round 5 (radius: 25)
[04:56:37 -30135.773779] SPR radius for FAST iterations: 25 (autodetect)
[04:56:37 -30135.773779] Model parameter optimization (eps = 3.000000)
[04:56:57 -30107.281723] FAST spr round 1 (radius: 25)
[04:58:26 -25903.195611] FAST spr round 2 (radius: 25)
[04:59:42 -25615.013055] FAST spr round 3 (radius: 25)
[05:00:52 -25567.985475] FAST spr round 4 (radius: 25)
[05:01:58 -25562.088106] FAST spr round 5 (radius: 25)
[05:03:01 -25562.087770] Model parameter optimization (eps = 1.000000)
[05:03:12 -25558.224931] SLOW spr round 1 (radius: 5)
[05:04:29 -25542.083428] SLOW spr round 2 (radius: 5)
[05:05:47 -25537.819046] SLOW spr round 3 (radius: 5)
[05:07:04 -25536.454782] SLOW spr round 4 (radius: 5)
[05:08:20 -25536.451694] SLOW spr round 5 (radius: 10)
[05:09:40 -25535.419078] SLOW spr round 6 (radius: 5)
[05:10:32] [worker #1] ML tree search #14, logLikelihood: -25507.397327
[05:11:16 -25532.824809] SLOW spr round 7 (radius: 5)
[05:12:42 -25532.824784] SLOW spr round 8 (radius: 10)
[05:14:04 -25532.385158] SLOW spr round 9 (radius: 5)
[05:15:38 -25532.385143] SLOW spr round 10 (radius: 10)
[05:17:05 -25532.385127] SLOW spr round 11 (radius: 15)
[05:18:55 -25532.385108] SLOW spr round 12 (radius: 20)
[05:21:30 -25532.385101] SLOW spr round 13 (radius: 25)
[05:24:27 -25532.385094] Model parameter optimization (eps = 0.100000)

[05:24:32] [worker #0] ML tree search #13, logLikelihood: -25532.297713

[05:24:32 -114858.880053] Initial branch length optimization
[05:24:35 -95710.398635] Model parameter optimization (eps = 10.000000)
[05:25:02 -95012.316607] AUTODETECT spr round 1 (radius: 5)
[05:26:28 -63945.964429] AUTODETECT spr round 2 (radius: 10)
[05:27:56 -44539.034939] AUTODETECT spr round 3 (radius: 15)
[05:29:36 -35961.308856] AUTODETECT spr round 4 (radius: 20)
[05:31:24 -33672.841675] AUTODETECT spr round 5 (radius: 25)
[05:33:18 -31945.503381] SPR radius for FAST iterations: 25 (autodetect)
[05:33:18 -31945.503381] Model parameter optimization (eps = 3.000000)
[05:33:37 -31914.916447] FAST spr round 1 (radius: 25)
[05:35:07 -26110.727815] FAST spr round 2 (radius: 25)
[05:36:26 -25632.170006] FAST spr round 3 (radius: 25)
[05:37:38 -25566.812398] FAST spr round 4 (radius: 25)
[05:38:44 -25554.720160] FAST spr round 5 (radius: 25)
[05:39:46 -25554.719953] Model parameter optimization (eps = 1.000000)
[05:39:59 -25550.451470] SLOW spr round 1 (radius: 5)
[05:41:16 -25542.740506] SLOW spr round 2 (radius: 5)
[05:42:33 -25540.626390] SLOW spr round 3 (radius: 5)
[05:43:48 -25540.623222] SLOW spr round 4 (radius: 10)
[05:45:06 -25533.307342] SLOW spr round 5 (radius: 5)
[05:46:42 -25531.439204] SLOW spr round 6 (radius: 5)
[05:47:44] [worker #1] ML tree search #16, logLikelihood: -25535.885425
[05:48:07 -25531.439141] SLOW spr round 7 (radius: 10)
[05:49:28 -25531.439123] SLOW spr round 8 (radius: 15)
[05:51:16 -25531.439105] SLOW spr round 9 (radius: 20)
[05:53:39 -25531.175405] SLOW spr round 10 (radius: 5)
[05:55:20 -25530.355965] SLOW spr round 11 (radius: 5)
[05:56:49 -25530.355778] SLOW spr round 12 (radius: 10)
[05:58:12 -25530.355759] SLOW spr round 13 (radius: 15)
[05:59:59 -25530.355742] SLOW spr round 14 (radius: 20)
[06:02:23 -25530.355724] SLOW spr round 15 (radius: 25)
[06:05:12 -25530.355706] Model parameter optimization (eps = 0.100000)

[06:05:17] [worker #0] ML tree search #15, logLikelihood: -25530.314014

[06:05:17 -114968.520994] Initial branch length optimization
[06:05:19 -96051.693669] Model parameter optimization (eps = 10.000000)
[06:05:48 -95354.981597] AUTODETECT spr round 1 (radius: 5)
[06:07:13 -63352.376084] AUTODETECT spr round 2 (radius: 10)
[06:08:42 -47066.325137] AUTODETECT spr round 3 (radius: 15)
[06:10:29 -37095.823102] AUTODETECT spr round 4 (radius: 20)
[06:12:27 -32970.319026] AUTODETECT spr round 5 (radius: 25)
[06:14:35 -31746.224093] SPR radius for FAST iterations: 25 (autodetect)
[06:14:35 -31746.224093] Model parameter optimization (eps = 3.000000)
[06:14:52 -31678.116192] FAST spr round 1 (radius: 25)
[06:16:20 -26307.915602] FAST spr round 2 (radius: 25)
[06:17:34 -25663.813446] FAST spr round 3 (radius: 25)
[06:18:45 -25639.790271] FAST spr round 4 (radius: 25)
[06:19:50 -25637.621385] FAST spr round 5 (radius: 25)
[06:20:54 -25637.620317] Model parameter optimization (eps = 1.000000)
[06:21:06 -25631.747120] SLOW spr round 1 (radius: 5)
[06:22:25 -25611.067914] SLOW spr round 2 (radius: 5)
[06:23:43 -25606.316017] SLOW spr round 3 (radius: 5)
[06:25:01 -25605.401472] SLOW spr round 4 (radius: 5)
[06:25:25] [worker #1] ML tree search #18, logLikelihood: -25537.135453
[06:26:18 -25605.401326] SLOW spr round 5 (radius: 10)
[06:27:38 -25605.401268] SLOW spr round 6 (radius: 15)
[06:29:30 -25602.603639] SLOW spr round 7 (radius: 5)
[06:31:10 -25602.361539] SLOW spr round 8 (radius: 5)
[06:32:37 -25602.361514] SLOW spr round 9 (radius: 10)
[06:34:00 -25602.361483] SLOW spr round 10 (radius: 15)
[06:35:52 -25602.361469] SLOW spr round 11 (radius: 20)
[06:38:13 -25602.361437] SLOW spr round 12 (radius: 25)
[06:40:46 -25602.361431] Model parameter optimization (eps = 0.100000)

[06:40:53] [worker #0] ML tree search #17, logLikelihood: -25602.295168

[06:40:53 -115076.272722] Initial branch length optimization
[06:40:55 -95629.514336] Model parameter optimization (eps = 10.000000)
[06:41:24 -94961.295846] AUTODETECT spr round 1 (radius: 5)
[06:42:49 -64796.492141] AUTODETECT spr round 2 (radius: 10)
[06:44:22 -48014.473062] AUTODETECT spr round 3 (radius: 15)
[06:46:03 -37518.997844] AUTODETECT spr round 4 (radius: 20)
[06:47:51 -31599.696313] AUTODETECT spr round 5 (radius: 25)
[06:49:36 -30841.391399] SPR radius for FAST iterations: 25 (autodetect)
[06:49:36 -30841.391399] Model parameter optimization (eps = 3.000000)
[06:50:04 -30806.400470] FAST spr round 1 (radius: 25)
[06:51:33 -25943.778945] FAST spr round 2 (radius: 25)
[06:52:48 -25605.034436] FAST spr round 3 (radius: 25)
[06:53:59 -25573.881498] FAST spr round 4 (radius: 25)
[06:55:05 -25570.004746] FAST spr round 5 (radius: 25)
[06:56:08 -25570.004268] Model parameter optimization (eps = 1.000000)
[06:56:19 -25568.153039] SLOW spr round 1 (radius: 5)
[06:57:37 -25557.712621] SLOW spr round 2 (radius: 5)
[06:58:54 -25556.557314] SLOW spr round 3 (radius: 5)
[07:00:10 -25556.554855] SLOW spr round 4 (radius: 10)
[07:01:31 -25555.805727] SLOW spr round 5 (radius: 5)
[07:03:07 -25554.778696] SLOW spr round 6 (radius: 5)
[07:04:31 -25554.695944] SLOW spr round 7 (radius: 10)
[07:05:52 -25554.695128] SLOW spr round 8 (radius: 15)
[07:07:26] [worker #1] ML tree search #20, logLikelihood: -25537.766772
[07:07:42 -25554.113432] SLOW spr round 9 (radius: 5)
[07:09:19 -25554.113239] SLOW spr round 10 (radius: 10)
[07:10:48 -25554.113122] SLOW spr round 11 (radius: 15)
[07:12:33 -25554.113008] SLOW spr round 12 (radius: 20)
[07:14:45 -25554.112837] SLOW spr round 13 (radius: 25)
[07:17:13 -25554.112721] Model parameter optimization (eps = 0.100000)

[07:17:18] [worker #0] ML tree search #19, logLikelihood: -25554.019463


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.227953,0.258291) (0.247102,0.504979) (0.305476,0.987247) (0.219469,2.345480) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -25503.865472

AIC score: 54377.730944 / AICc score: 5736197.730944 / BIC score: 58716.118943
Free parameters (model + branch lengths): 1685

WARNING: Number of free parameters (K=1685) is larger than alignment size (n=97).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UNN4/3_mltree/Q9UNN4.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UNN4/3_mltree/Q9UNN4.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UNN4/3_mltree/Q9UNN4.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UNN4/3_mltree/Q9UNN4.raxml.log

Analysis started: 18-Jul-2021 05:12:26 / finished: 18-Jul-2021 12:29:45

Elapsed time: 26238.533 seconds