RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 03-Jun-2021 02:01:54 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9ULV1/2_msa/Q9ULV1_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9ULV1/3_mltree/Q9ULV1.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9ULV1/4_raxmlng_ancestral/Q9ULV1 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622674914 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9ULV1/2_msa/Q9ULV1_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 537 sites WARNING: Sequences tr_B4QQD4_B4QQD4_DROSI_7240 and sp_Q9VVX3_FRIZ2_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QQD4_B4QQD4_DROSI_7240 and tr_B4IG02_B4IG02_DROSE_7238 are exactly identical! WARNING: Sequences sp_O70421_FZD1_MOUSE_10090 and tr_H2PMY3_H2PMY3_PONAB_9601 are exactly identical! WARNING: Sequences sp_O70421_FZD1_MOUSE_10090 and tr_I3ML35_I3ML35_ICTTR_43179 are exactly identical! WARNING: Sequences sp_O70421_FZD1_MOUSE_10090 and sp_Q9UP38_FZD1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_O70421_FZD1_MOUSE_10090 and tr_A0A2Y9T066_A0A2Y9T066_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q61091_FZD8_MOUSE_10090 and tr_A0A287BE59_A0A287BE59_PIG_9823 are exactly identical! WARNING: Sequences sp_Q61091_FZD8_MOUSE_10090 and tr_A0A2U4B6Z3_A0A2U4B6Z3_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q9JIP6_FZD2_MOUSE_10090 and tr_G3QV99_G3QV99_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q9JIP6_FZD2_MOUSE_10090 and tr_H2NTT7_H2NTT7_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q9JIP6_FZD2_MOUSE_10090 and sp_Q14332_FZD2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q9JIP6_FZD2_MOUSE_10090 and tr_F7GPB5_F7GPB5_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q9JIP6_FZD2_MOUSE_10090 and tr_A0A287AFB4_A0A287AFB4_PIG_9823 are exactly identical! WARNING: Sequences sp_Q9JIP6_FZD2_MOUSE_10090 and tr_A0A0D9SCE5_A0A0D9SCE5_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q9JIP6_FZD2_MOUSE_10090 and tr_A0A1S3GFA3_A0A1S3GFA3_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q9JIP6_FZD2_MOUSE_10090 and tr_A0A2K6CEY5_A0A2K6CEY5_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q9JIP6_FZD2_MOUSE_10090 and tr_A0A2K5XEE5_A0A2K5XEE5_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q9JIP6_FZD2_MOUSE_10090 and tr_A0A2Y9MP97_A0A2Y9MP97_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q9JIP6_FZD2_MOUSE_10090 and tr_A0A2Y9FMI9_A0A2Y9FMI9_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q9JIP6_FZD2_MOUSE_10090 and tr_A0A383ZZ87_A0A383ZZ87_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q9R216_FZD9_MOUSE_10090 and sp_Q8K4C8_FZD9_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XPH4_M3XPH4_MUSPF_9669 and tr_E2R9M9_E2R9M9_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XPH4_M3XPH4_MUSPF_9669 and tr_A0A2Y9KMX6_A0A2Y9KMX6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XPH4_M3XPH4_MUSPF_9669 and tr_A0A384D8D6_A0A384D8D6_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Z5S6_M3Z5S6_MUSPF_9669 and tr_F1PCN5_F1PCN5_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Z5S6_M3Z5S6_MUSPF_9669 and tr_A0A287AH83_A0A287AH83_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Z5S6_M3Z5S6_MUSPF_9669 and tr_A0A1S3G0F9_A0A1S3G0F9_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3Z5S6_M3Z5S6_MUSPF_9669 and tr_A0A2U3VH96_A0A2U3VH96_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z5S6_M3Z5S6_MUSPF_9669 and tr_A0A2U3YQA4_A0A2U3YQA4_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P18537_FRIZ_DROME_7227 and tr_B4HHP7_B4HHP7_DROSE_7238 are exactly identical! WARNING: Sequences sp_P18537_FRIZ_DROME_7227 and tr_A0A1W4UI87_A0A1W4UI87_DROFC_30025 are exactly identical! WARNING: Sequences tr_A0A2I3GI83_A0A2I3GI83_NOMLE_61853 and tr_A0A2I2ZTF8_A0A2I2ZTF8_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GI83_A0A2I3GI83_NOMLE_61853 and tr_H2P8B3_H2P8B3_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3GI83_A0A2I3GI83_NOMLE_61853 and tr_A0A2I3TGC6_A0A2I3TGC6_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GI83_A0A2I3GI83_NOMLE_61853 and sp_O75084_FZD7_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2YRF3_A0A2I2YRF3_GORGO_9595 and sp_Q13467_FZD5_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2YRF3_A0A2I2YRF3_GORGO_9595 and tr_A0A1D5QP67_A0A1D5QP67_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I2YRF3_A0A2I2YRF3_GORGO_9595 and tr_A0A096N985_A0A096N985_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I2YRF3_A0A2I2YRF3_GORGO_9595 and tr_A0A0D9SBQ2_A0A0D9SBQ2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I2YRF3_A0A2I2YRF3_GORGO_9595 and tr_A0A2K5KJN1_A0A2K5KJN1_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I2YRF3_A0A2I2YRF3_GORGO_9595 and tr_A0A2K6B1R4_A0A2K6B1R4_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I2YRF3_A0A2I2YRF3_GORGO_9595 and tr_A0A2R8ZA02_A0A2R8ZA02_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2ZM69_A0A2I2ZM69_GORGO_9595 and tr_H2R591_H2R591_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZM69_A0A2I2ZM69_GORGO_9595 and sp_O00144_FZD9_HUMAN_9606 are exactly identical! WARNING: Sequences tr_Q29DI2_Q29DI2_DROPS_46245 and tr_B4H945_B4H945_DROPE_7234 are exactly identical! WARNING: Sequences tr_E2QVP7_E2QVP7_CANLF_9615 and tr_A0A2U3WAR7_A0A2U3WAR7_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1P9V1_F1P9V1_CANLF_9615 and sp_Q8WMU5_FZD6_CANLF_9615 are exactly identical! WARNING: Sequences tr_A0A2J8N8E6_A0A2J8N8E6_PANTR_9598 and sp_Q9NPG1_FZD3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2J8N8E6_A0A2J8N8E6_PANTR_9598 and tr_A0A2R9AS81_A0A2R9AS81_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2Q772_H2Q772_PANTR_9598 and tr_F7EZ48_F7EZ48_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2Q772_H2Q772_PANTR_9598 and tr_A0A096NAU3_A0A096NAU3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2Q772_H2Q772_PANTR_9598 and tr_A0A2K5L1P0_A0A2K5L1P0_CERAT_9531 are exactly identical! WARNING: Sequences tr_K7AZD4_K7AZD4_PANTR_9598 and tr_A0A2R9BZZ4_A0A2R9BZZ4_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q498S8_FZD8_RAT_10116 and tr_A0A2U3X3T3_A0A2U3X3T3_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q498S8_FZD8_RAT_10116 and tr_A0A2Y9KE38_A0A2Y9KE38_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A088A6V2_A0A088A6V2_APIME_7460 and tr_A0A2A3EBH9_A0A2A3EBH9_APICC_94128 are exactly identical! WARNING: Sequences sp_Q9H461_FZD8_HUMAN_9606 and tr_F7G2Z5_F7G2Z5_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A1D5Q1B1_A0A1D5Q1B1_MACMU_9544 and tr_A0A096MVT8_A0A096MVT8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5Q1B1_A0A1D5Q1B1_MACMU_9544 and tr_A0A2K5KR10_A0A2K5KR10_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5Q1B1_A0A1D5Q1B1_MACMU_9544 and tr_A0A2K6BE62_A0A2K6BE62_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6QL95_F6QL95_MACMU_9544 and tr_G7PCZ7_G7PCZ7_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6QL95_F6QL95_MACMU_9544 and tr_A0A096N2M5_A0A096N2M5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6QL95_F6QL95_MACMU_9544 and tr_A0A0D9RTP7_A0A0D9RTP7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6QL95_F6QL95_MACMU_9544 and tr_A0A2K5ZWR3_A0A2K5ZWR3_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6SV99_F6SV99_MACMU_9544 and tr_G7PCG6_G7PCG6_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6SV99_F6SV99_MACMU_9544 and tr_A0A096P0Y9_A0A096P0Y9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6SV99_F6SV99_MACMU_9544 and tr_A0A0D9RHL0_A0A0D9RHL0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6SV99_F6SV99_MACMU_9544 and tr_A0A2K6DUK2_A0A2K6DUK2_MACNE_9545 are exactly identical! WARNING: Sequences tr_E5S837_E5S837_TRISP_6334 and tr_A0A0V0SJL5_A0A0V0SJL5_9BILA_6336 are exactly identical! WARNING: Sequences tr_G3U8W9_G3U8W9_LOXAF_9785 and tr_A0A0D9SCP4_A0A0D9SCP4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G0MFK4_G0MFK4_CAEBE_135651 and tr_G0P1S7_G0P1S7_CAEBE_135651 are exactly identical! WARNING: Sequences tr_M3X1P3_M3X1P3_FELCA_9685 and tr_A0A1U8BMJ3_A0A1U8BMJ3_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3X1P3_M3X1P3_FELCA_9685 and tr_A0A2U3WFB1_A0A2U3WFB1_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3X1P3_M3X1P3_FELCA_9685 and tr_A0A2U3XWS6_A0A2U3XWS6_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3X1P3_M3X1P3_FELCA_9685 and tr_A0A2Y9L2N8_A0A2Y9L2N8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A096N7F2_A0A096N7F2_PAPAN_9555 and tr_A0A0D9SBP9_A0A0D9SBP9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096N7F2_A0A096N7F2_PAPAN_9555 and tr_A0A2K5KJX2_A0A2K5KJX2_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096P631_A0A096P631_PAPAN_9555 and tr_A0A2K5M6D0_A0A2K5M6D0_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A091EHX8_A0A091EHX8_CORBR_85066 and tr_A0A099ZKQ8_A0A099ZKQ8_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091IR30_A0A091IR30_EGRGA_188379 and tr_A0A093HV50_A0A093HV50_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091IR30_A0A091IR30_EGRGA_188379 and tr_A0A0A0B0A9_A0A0A0B0A9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A093QDY8_A0A093QDY8_9PASS_328815 and tr_A0A0A0A6F2_A0A0A0A6F2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A087QSK5_A0A087QSK5_APTFO_9233 and tr_A0A0A0APG0_A0A0A0APG0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A087QV50_A0A087QV50_APTFO_9233 and tr_A0A093GJY3_A0A093GJY3_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A0V1CZT3_A0A0V1CZT3_TRIBR_45882 and tr_A0A0V0X0E5_A0A0V0X0E5_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1CZT3_A0A0V1CZT3_TRIBR_45882 and tr_A0A0V1P3S7_A0A0V1P3S7_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1CZT3_A0A0V1CZT3_TRIBR_45882 and tr_A0A0V0TCZ9_A0A0V0TCZ9_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1D8S7_A0A0V1D8S7_TRIBR_45882 and tr_A0A0V0VX50_A0A0V0VX50_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1D8S7_A0A0V1D8S7_TRIBR_45882 and tr_A0A0V1NJR8_A0A0V1NJR8_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1D8S7_A0A0V1D8S7_TRIBR_45882 and tr_A0A0V0THD6_A0A0V0THD6_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A1I7TR15_A0A1I7TR15_9PELO_1561998 and tr_A0A1I7TR16_A0A1I7TR16_9PELO_1561998 are exactly identical! WARNING: Sequences tr_A0A226MKE2_A0A226MKE2_CALSU_9009 and tr_A0A226P293_A0A226P293_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2U4A9D3_A0A2U4A9D3_TURTR_9739 and tr_A0A2Y9SPN4_A0A2Y9SPN4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4BN63_A0A2U4BN63_TURTR_9739 and tr_A0A2Y9MML7_A0A2Y9MML7_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BN63_A0A2U4BN63_TURTR_9739 and tr_A0A2Y9EX37_A0A2Y9EX37_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4BN72_A0A2U4BN72_TURTR_9739 and tr_A0A2Y9N1H2_A0A2Y9N1H2_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BUM2_A0A2U4BUM2_TURTR_9739 and tr_A0A2U4BUM5_A0A2U4BUM5_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2U3X0S6_A0A2U3X0S6_ODORO_9708 and tr_A0A2U3Y8T6_A0A2U3Y8T6_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3ZSF8_A0A2U3ZSF8_ODORO_9708 and tr_A0A2Y9IQR6_A0A2Y9IQR6_ENHLU_391180 are exactly identical! WARNING: Duplicate sequences found: 99 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9ULV1/4_raxmlng_ancestral/Q9ULV1.raxml.reduced.phy Alignment comprises 1 partitions and 537 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 537 Gaps: 13.86 % Invariant sites: 0.93 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9ULV1/4_raxmlng_ancestral/Q9ULV1.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9ULV1/3_mltree/Q9ULV1.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 135 / 10800 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -134838.729913 [00:00:00 -134838.729913] Initial branch length optimization [00:00:01 -133742.930868] Model parameter optimization (eps = 0.100000) [00:00:36] Tree #1, final logLikelihood: -133223.395542 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.260157,0.341559) (0.250231,0.515761) (0.294922,0.899694) (0.194689,2.654191) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9ULV1/4_raxmlng_ancestral/Q9ULV1.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9ULV1/4_raxmlng_ancestral/Q9ULV1.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9ULV1/4_raxmlng_ancestral/Q9ULV1.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9ULV1/4_raxmlng_ancestral/Q9ULV1.raxml.log Analysis started: 03-Jun-2021 02:01:54 / finished: 03-Jun-2021 02:02:35 Elapsed time: 41.190 seconds Consumed energy: 3.170 Wh