RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 14-Jul-2021 20:53:46 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9ULN7/2_msa/Q9ULN7_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9ULN7/3_mltree/Q9ULN7 --seed 2 --threads 5 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9ULN7/2_msa/Q9ULN7_trimmed_msa.fasta
[00:00:00] Loaded alignment with 311 taxa and 346 sites

WARNING: Sequences tr_A0A2I2Y5S4_A0A2I2Y5S4_GORGO_9595 and tr_A0A2I3STV2_A0A2I3STV2_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2Y5S4_A0A2I2Y5S4_GORGO_9595 and sp_A0A1B0GUJ8_PNM8C_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I2Y5S4_A0A2I2Y5S4_GORGO_9595 and tr_A0A2R8ZDZ4_A0A2R8ZDZ4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3QTJ8_G3QTJ8_GORGO_9595 and tr_H2NLR1_H2NLR1_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G3QTJ8_G3QTJ8_GORGO_9595 and tr_H2Q8K5_H2Q8K5_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3QTJ8_G3QTJ8_GORGO_9595 and sp_Q8ND90_PNMA1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3QTJ8_G3QTJ8_GORGO_9595 and tr_A0A2R8ZGL3_A0A2R8ZGL3_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I3S037_A0A2I3S037_PANTR_9598 and sp_Q9UL41_PNMA3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3S037_A0A2I3S037_PANTR_9598 and tr_A0A2R9ATK7_A0A2R9ATK7_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2J8IMP9_A0A2J8IMP9_PANTR_9598 and tr_A0A2R8ZAG4_A0A2R8ZAG4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2Q8T9_H2Q8T9_PANTR_9598 and tr_A0A2R8ZKT0_A0A2R8ZKT0_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A1D5QS80_A0A1D5QS80_MACMU_9544 and tr_A0A2I3MP21_A0A2I3MP21_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A1D5QS80_A0A1D5QS80_MACMU_9544 and tr_A0A0D9S9E0_A0A0D9S9E0_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A1D5QS80_A0A1D5QS80_MACMU_9544 and tr_A0A2K5M6V6_A0A2K5M6V6_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A1D5QS80_A0A1D5QS80_MACMU_9544 and tr_A0A2K6C7Z3_A0A2K6C7Z3_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A1D5QS80_A0A1D5QS80_MACMU_9544 and tr_A0A2K5Y350_A0A2K5Y350_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F7CEG4_F7CEG4_MACMU_9544 and tr_G7PAT4_G7PAT4_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7CEG4_F7CEG4_MACMU_9544 and tr_A0A096MKX0_A0A096MKX0_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F7CEG4_F7CEG4_MACMU_9544 and tr_A0A0D9SDY2_A0A0D9SDY2_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F7CEG4_F7CEG4_MACMU_9544 and tr_A0A2K5KU88_A0A2K5KU88_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F7CEG4_F7CEG4_MACMU_9544 and tr_A0A2K5XJN9_A0A2K5XJN9_MANLE_9568 are exactly identical!
WARNING: Sequences tr_H9FNX3_H9FNX3_MACMU_9544 and tr_G7PCY0_G7PCY0_MACFA_9541 are exactly identical!
WARNING: Sequences tr_H9H5R3_H9H5R3_MACMU_9544 and tr_G7PBC0_G7PBC0_MACFA_9541 are exactly identical!
WARNING: Sequences tr_H9H5R3_H9H5R3_MACMU_9544 and tr_A0A2I3NHV5_A0A2I3NHV5_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_H9H5R3_H9H5R3_MACMU_9544 and tr_A0A2K6AZA0_A0A2K6AZA0_MACNE_9545 are exactly identical!
WARNING: Sequences tr_H9H5R3_H9H5R3_MACMU_9544 and tr_A0A2K5XWQ2_A0A2K5XWQ2_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2I3NHG8_A0A2I3NHG8_PAPAN_9555 and tr_A0A2K6AUY1_A0A2K6AUY1_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A2K5KQ73_A0A2K5KQ73_CERAT_9531 and tr_A0A2K5ZP97_A0A2K5ZP97_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2U3VVI0_A0A2U3VVI0_ODORO_9708 and tr_A0A2U3XHT8_A0A2U3XHT8_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_A0A2U3VVI0_A0A2U3VVI0_ODORO_9708 and tr_A0A384CTR3_A0A384CTR3_URSMA_29073 are exactly identical!
WARNING: Duplicate sequences found: 30

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9ULN7/3_mltree/Q9ULN7.raxml.reduced.phy

Alignment comprises 1 partitions and 346 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 346 / 346
Gaps: 10.60 %
Invariant sites: 0.29 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9ULN7/3_mltree/Q9ULN7.raxml.rba

Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 311 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 346 / 27680
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -186499.963589] Initial branch length optimization
[00:00:01 -154568.067821] Model parameter optimization (eps = 10.000000)
[00:00:29 -153974.413781] AUTODETECT spr round 1 (radius: 5)
[00:01:01 -89941.142495] AUTODETECT spr round 2 (radius: 10)
[00:01:41 -65476.952586] AUTODETECT spr round 3 (radius: 15)
[00:02:30 -53508.052294] AUTODETECT spr round 4 (radius: 20)
[00:03:38 -48838.548829] AUTODETECT spr round 5 (radius: 25)
[00:04:51 -48776.959168] SPR radius for FAST iterations: 25 (autodetect)
[00:04:51 -48776.959168] Model parameter optimization (eps = 3.000000)
[00:05:08 -48592.327132] FAST spr round 1 (radius: 25)
[00:05:40 -40882.768593] FAST spr round 2 (radius: 25)
[00:06:07 -40329.629972] FAST spr round 3 (radius: 25)
[00:06:28 -40327.530148] FAST spr round 4 (radius: 25)
[00:06:48 -40327.529920] Model parameter optimization (eps = 1.000000)
[00:06:55 -40323.697263] SLOW spr round 1 (radius: 5)
[00:07:40 -40297.770895] SLOW spr round 2 (radius: 5)
[00:08:26 -40293.667079] SLOW spr round 3 (radius: 5)
[00:09:07 -40293.666857] SLOW spr round 4 (radius: 10)
[00:09:50 -40293.666856] SLOW spr round 5 (radius: 15)
[00:11:18 -40293.666856] SLOW spr round 6 (radius: 20)
[00:13:37 -40293.666856] SLOW spr round 7 (radius: 25)
[00:14:54] [worker #1] ML tree search #2, logLikelihood: -40302.150101
[00:15:04 -40293.666856] Model parameter optimization (eps = 0.100000)

[00:15:08] [worker #0] ML tree search #1, logLikelihood: -40293.629481

[00:15:08 -184651.581646] Initial branch length optimization
[00:15:10 -154297.460215] Model parameter optimization (eps = 10.000000)
[00:15:36] [worker #4] ML tree search #5, logLikelihood: -40296.427229
[00:15:38 -153556.355042] AUTODETECT spr round 1 (radius: 5)
[00:15:57] [worker #2] ML tree search #3, logLikelihood: -40300.734969
[00:16:10 -87240.342955] AUTODETECT spr round 2 (radius: 10)
[00:16:41] [worker #3] ML tree search #4, logLikelihood: -40294.604707
[00:16:51 -61442.367915] AUTODETECT spr round 3 (radius: 15)
[00:17:45 -49429.714265] AUTODETECT spr round 4 (radius: 20)
[00:18:58 -46006.764583] AUTODETECT spr round 5 (radius: 25)
[00:20:15 -45984.932339] SPR radius for FAST iterations: 25 (autodetect)
[00:20:15 -45984.932339] Model parameter optimization (eps = 3.000000)
[00:20:32 -45818.847000] FAST spr round 1 (radius: 25)
[00:21:09 -40533.876026] FAST spr round 2 (radius: 25)
[00:21:36 -40335.516255] FAST spr round 3 (radius: 25)
[00:22:00 -40320.515939] FAST spr round 4 (radius: 25)
[00:22:20 -40320.515933] Model parameter optimization (eps = 1.000000)
[00:22:26 -40319.396991] SLOW spr round 1 (radius: 5)
[00:23:13 -40302.820266] SLOW spr round 2 (radius: 5)
[00:23:58 -40299.586044] SLOW spr round 3 (radius: 5)
[00:24:43 -40294.860781] SLOW spr round 4 (radius: 5)
[00:25:25 -40294.860723] SLOW spr round 5 (radius: 10)
[00:26:08 -40294.860707] SLOW spr round 6 (radius: 15)
[00:27:38 -40294.860701] SLOW spr round 7 (radius: 20)
[00:29:50 -40294.860699] SLOW spr round 8 (radius: 25)
[00:31:17 -40294.860698] Model parameter optimization (eps = 0.100000)

[00:31:21] [worker #0] ML tree search #6, logLikelihood: -40294.798714

[00:31:21 -181439.188915] Initial branch length optimization
[00:31:23 -149743.705415] Model parameter optimization (eps = 10.000000)
[00:31:38] [worker #2] ML tree search #8, logLikelihood: -40304.620594
[00:31:49 -149078.458023] AUTODETECT spr round 1 (radius: 5)
[00:32:21 -81353.055400] AUTODETECT spr round 2 (radius: 10)
[00:32:29] [worker #3] ML tree search #9, logLikelihood: -40294.133499
[00:32:43] [worker #1] ML tree search #7, logLikelihood: -40299.874948
[00:33:02 -58735.867081] AUTODETECT spr round 3 (radius: 15)
[00:34:02 -46118.772555] AUTODETECT spr round 4 (radius: 20)
[00:34:18] [worker #4] ML tree search #10, logLikelihood: -40294.565774
[00:35:03 -46047.426018] AUTODETECT spr round 5 (radius: 25)
[00:36:16 -46045.148858] SPR radius for FAST iterations: 25 (autodetect)
[00:36:16 -46045.148858] Model parameter optimization (eps = 3.000000)
[00:36:32 -45881.300033] FAST spr round 1 (radius: 25)
[00:37:07 -40406.594936] FAST spr round 2 (radius: 25)
[00:37:33 -40339.385648] FAST spr round 3 (radius: 25)
[00:37:57 -40329.913631] FAST spr round 4 (radius: 25)
[00:38:19 -40325.242428] FAST spr round 5 (radius: 25)
[00:38:39 -40324.927486] FAST spr round 6 (radius: 25)
[00:38:59 -40324.927356] Model parameter optimization (eps = 1.000000)
[00:39:06 -40321.529420] SLOW spr round 1 (radius: 5)
[00:39:53 -40307.832648] SLOW spr round 2 (radius: 5)
[00:40:38 -40301.954200] SLOW spr round 3 (radius: 5)
[00:41:22 -40297.246163] SLOW spr round 4 (radius: 5)
[00:42:03 -40297.245994] SLOW spr round 5 (radius: 10)
[00:42:47 -40297.245989] SLOW spr round 6 (radius: 15)
[00:44:12 -40297.245989] SLOW spr round 7 (radius: 20)
[00:46:37 -40297.245989] SLOW spr round 8 (radius: 25)
[00:47:30] [worker #2] ML tree search #13, logLikelihood: -40294.373420
[00:48:08 -40297.245989] Model parameter optimization (eps = 0.100000)

[00:48:14] [worker #0] ML tree search #11, logLikelihood: -40297.109690

[00:48:14 -185509.068321] Initial branch length optimization
[00:48:16 -153599.999281] Model parameter optimization (eps = 10.000000)
[00:48:38 -152831.519843] AUTODETECT spr round 1 (radius: 5)
[00:48:41] [worker #3] ML tree search #14, logLikelihood: -40303.474084
[00:48:43] [worker #1] ML tree search #12, logLikelihood: -40294.133854
[00:49:09 -90163.202080] AUTODETECT spr round 2 (radius: 10)
[00:49:49 -59454.502545] AUTODETECT spr round 3 (radius: 15)
[00:50:40 -47453.583772] AUTODETECT spr round 4 (radius: 20)
[00:51:31] [worker #4] ML tree search #15, logLikelihood: -40301.049566
[00:51:50 -46496.745902] AUTODETECT spr round 5 (radius: 25)
[00:53:05 -46444.003877] SPR radius for FAST iterations: 25 (autodetect)
[00:53:05 -46444.003877] Model parameter optimization (eps = 3.000000)
[00:53:22 -46276.870220] FAST spr round 1 (radius: 25)
[00:53:57 -40540.294817] FAST spr round 2 (radius: 25)
[00:54:26 -40334.022476] FAST spr round 3 (radius: 25)
[00:54:51 -40318.715547] FAST spr round 4 (radius: 25)
[00:55:13 -40316.903434] FAST spr round 5 (radius: 25)
[00:55:33 -40316.903409] Model parameter optimization (eps = 1.000000)
[00:55:42 -40313.765538] SLOW spr round 1 (radius: 5)
[00:56:27 -40308.536499] SLOW spr round 2 (radius: 5)
[00:57:12 -40307.849999] SLOW spr round 3 (radius: 5)
[00:57:55 -40307.849157] SLOW spr round 4 (radius: 10)
[00:58:39 -40307.118736] SLOW spr round 5 (radius: 5)
[00:59:42 -40305.461255] SLOW spr round 6 (radius: 5)
[01:00:34 -40301.795832] SLOW spr round 7 (radius: 5)
[01:01:20 -40301.455015] SLOW spr round 8 (radius: 5)
[01:02:02 -40301.454781] SLOW spr round 9 (radius: 10)
[01:02:46 -40300.996987] SLOW spr round 10 (radius: 5)
[01:03:46 -40300.996986] SLOW spr round 11 (radius: 10)
[01:04:37 -40300.996986] SLOW spr round 12 (radius: 15)
[01:06:00] [worker #1] ML tree search #17, logLikelihood: -40293.922385
[01:06:04 -40300.996986] SLOW spr round 13 (radius: 20)
[01:06:30] [worker #4] ML tree search #20, logLikelihood: -40300.628433
[01:07:41] [worker #2] ML tree search #18, logLikelihood: -40299.164573
[01:08:22 -40300.996986] SLOW spr round 14 (radius: 25)
[01:09:48 -40300.996986] Model parameter optimization (eps = 0.100000)

[01:09:54] [worker #0] ML tree search #16, logLikelihood: -40300.651812

[01:10:05] [worker #3] ML tree search #19, logLikelihood: -40298.059826

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.112598,0.514716) (0.088718,0.770559) (0.374050,0.725001) (0.424633,1.418859) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -40293.629481

AIC score: 81837.258962 / AICc score: 864337.258962 / BIC score: 84241.283196
Free parameters (model + branch lengths): 625

WARNING: Number of free parameters (K=625) is larger than alignment size (n=346).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9ULN7/3_mltree/Q9ULN7.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9ULN7/3_mltree/Q9ULN7.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9ULN7/3_mltree/Q9ULN7.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9ULN7/3_mltree/Q9ULN7.raxml.log

Analysis started: 14-Jul-2021 20:53:46 / finished: 14-Jul-2021 22:03:52

Elapsed time: 4205.520 seconds