RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 09-Jul-2021 12:57:32 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UKL2/2_msa/Q9UKL2_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UKL2/3_mltree/Q9UKL2 --seed 2 --threads 5 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UKL2/2_msa/Q9UKL2_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 302 sites

WARNING: Sequences tr_M3Z771_M3Z771_MUSPF_9669 and tr_A0A2Y9KUL4_A0A2Y9KUL4_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_A0A2I2ZUI7_A0A2I2ZUI7_GORGO_9595 and tr_A0A2J8P6V2_A0A2J8P6V2_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2ZUI7_A0A2I2ZUI7_GORGO_9595 and sp_Q9H255_O51E2_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I2ZUI7_A0A2I2ZUI7_GORGO_9595 and tr_A0A2R8ZJR1_A0A2R8ZJR1_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2Q2Y6_H2Q2Y6_PANTR_9598 and tr_A0A2R8ZMC0_A0A2R8ZMC0_PANPA_9597 are exactly identical!
WARNING: Sequences tr_W5PAT1_W5PAT1_SHEEP_9940 and tr_W5QBA8_W5QBA8_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_F7DZ22_F7DZ22_MACMU_9544 and tr_G7PQY6_G7PQY6_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G7NE26_G7NE26_MACMU_9544 and tr_G7PQW9_G7PQW9_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G7NE26_G7NE26_MACMU_9544 and tr_A0A2K5KQ23_A0A2K5KQ23_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G7NE26_G7NE26_MACMU_9544 and tr_A0A2K6B7U2_A0A2K6B7U2_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G7NE26_G7NE26_MACMU_9544 and tr_A0A2K5XWB5_A0A2K5XWB5_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A1S3A1I6_A0A1S3A1I6_ERIEU_9365 and tr_A0A1S3AED1_A0A1S3AED1_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_A0A226MGI1_A0A226MGI1_CALSU_9009 and tr_A0A226NPS5_A0A226NPS5_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A2K5KNT5_A0A2K5KNT5_CERAT_9531 and tr_A0A2K5XPI8_A0A2K5XPI8_MANLE_9568 are exactly identical!
WARNING: Duplicate sequences found: 14

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UKL2/3_mltree/Q9UKL2.raxml.reduced.phy

Alignment comprises 1 partitions and 302 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 302 / 302
Gaps: 0.47 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UKL2/3_mltree/Q9UKL2.raxml.rba

Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 302 / 24160
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -435327.341212] Initial branch length optimization
[00:00:07 -381158.384978] Model parameter optimization (eps = 10.000000)
[00:01:22 -379049.687080] AUTODETECT spr round 1 (radius: 5)
[00:05:29 -257324.262503] AUTODETECT spr round 2 (radius: 10)
[00:09:52 -170989.822675] AUTODETECT spr round 3 (radius: 15)
[00:14:50 -147309.206796] AUTODETECT spr round 4 (radius: 20)
[00:21:21 -132628.010573] AUTODETECT spr round 5 (radius: 25)
[00:28:00 -131153.380642] SPR radius for FAST iterations: 25 (autodetect)
[00:28:00 -131153.380642] Model parameter optimization (eps = 3.000000)
[00:28:32 -131130.040215] FAST spr round 1 (radius: 25)
[00:32:26 -109417.574606] FAST spr round 2 (radius: 25)
[00:35:28 -108702.489436] FAST spr round 3 (radius: 25)
[00:38:22 -108639.681780] FAST spr round 4 (radius: 25)
[00:40:54 -108628.170771] FAST spr round 5 (radius: 25)
[00:43:21 -108622.581985] FAST spr round 6 (radius: 25)
[00:45:40 -108622.581980] Model parameter optimization (eps = 1.000000)
[00:45:59 -108618.587674] SLOW spr round 1 (radius: 5)
[00:49:40 -108581.442847] SLOW spr round 2 (radius: 5)
[00:53:13 -108574.026861] SLOW spr round 3 (radius: 5)
[00:56:34 -108572.016951] SLOW spr round 4 (radius: 5)
[00:59:49 -108572.016921] SLOW spr round 5 (radius: 10)
[01:03:10 -108572.016921] SLOW spr round 6 (radius: 15)
[01:09:20 -108572.016921] SLOW spr round 7 (radius: 20)
[01:20:23 -108572.016921] SLOW spr round 8 (radius: 25)
[01:29:31] [worker #3] ML tree search #4, logLikelihood: -108566.963949
[01:30:17] [worker #4] ML tree search #5, logLikelihood: -108595.132331
[01:34:48 -108572.016921] Model parameter optimization (eps = 0.100000)

[01:35:19] [worker #0] ML tree search #1, logLikelihood: -108570.951276

[01:35:19 -432485.231894] Initial branch length optimization
[01:35:25 -379264.598122] Model parameter optimization (eps = 10.000000)
[01:36:32 -377217.305908] AUTODETECT spr round 1 (radius: 5)
[01:37:40] [worker #1] ML tree search #2, logLikelihood: -108576.370365
[01:40:37 -248303.270073] AUTODETECT spr round 2 (radius: 10)
[01:44:27] [worker #2] ML tree search #3, logLikelihood: -108586.869305
[01:45:02 -169011.220824] AUTODETECT spr round 3 (radius: 15)
[01:49:46 -137721.013567] AUTODETECT spr round 4 (radius: 20)
[01:57:10 -127531.240046] AUTODETECT spr round 5 (radius: 25)
[02:06:55 -126727.812764] SPR radius for FAST iterations: 25 (autodetect)
[02:06:55 -126727.812764] Model parameter optimization (eps = 3.000000)
[02:07:34 -126683.481771] FAST spr round 1 (radius: 25)
[02:11:33 -109418.465102] FAST spr round 2 (radius: 25)
[02:14:44 -108716.319564] FAST spr round 3 (radius: 25)
[02:17:40 -108669.719933] FAST spr round 4 (radius: 25)
[02:20:06 -108668.358632] FAST spr round 5 (radius: 25)
[02:22:29 -108668.358594] Model parameter optimization (eps = 1.000000)
[02:23:02 -108648.221604] SLOW spr round 1 (radius: 5)
[02:26:46 -108616.631072] SLOW spr round 2 (radius: 5)
[02:30:20 -108614.051415] SLOW spr round 3 (radius: 5)
[02:33:46 -108607.164725] SLOW spr round 4 (radius: 5)
[02:37:06 -108607.164052] SLOW spr round 5 (radius: 10)
[02:40:32 -108607.163986] SLOW spr round 6 (radius: 15)
[02:46:36 -108607.163978] SLOW spr round 7 (radius: 20)
[02:57:53 -108607.163977] SLOW spr round 8 (radius: 25)
[03:12:01 -108607.163977] Model parameter optimization (eps = 0.100000)

[03:12:19] [worker #0] ML tree search #6, logLikelihood: -108605.898681

[03:12:19 -430609.465633] Initial branch length optimization
[03:12:27 -378141.287425] Model parameter optimization (eps = 10.000000)
[03:13:32 -376042.463647] AUTODETECT spr round 1 (radius: 5)
[03:16:07] [worker #1] ML tree search #7, logLikelihood: -108585.205462
[03:16:08] [worker #3] ML tree search #9, logLikelihood: -108576.490985
[03:17:02] [worker #4] ML tree search #10, logLikelihood: -108592.367417
[03:17:41 -251593.191685] AUTODETECT spr round 2 (radius: 10)
[03:22:07 -165742.239087] AUTODETECT spr round 3 (radius: 15)
[03:26:34 -142540.686533] AUTODETECT spr round 4 (radius: 20)
[03:31:56] [worker #2] ML tree search #8, logLikelihood: -108579.540623
[03:32:56 -133237.845960] AUTODETECT spr round 5 (radius: 25)
[03:40:36 -126866.572133] SPR radius for FAST iterations: 25 (autodetect)
[03:40:36 -126866.572133] Model parameter optimization (eps = 3.000000)
[03:41:07 -126829.802673] FAST spr round 1 (radius: 25)
[03:45:00 -109461.411913] FAST spr round 2 (radius: 25)
[03:48:00 -108713.361368] FAST spr round 3 (radius: 25)
[03:50:45 -108635.760794] FAST spr round 4 (radius: 25)
[03:53:08 -108627.445712] FAST spr round 5 (radius: 25)
[03:55:27 -108627.445676] Model parameter optimization (eps = 1.000000)
[03:55:49 -108626.228953] SLOW spr round 1 (radius: 5)
[03:59:29 -108587.361174] SLOW spr round 2 (radius: 5)
[04:03:00 -108582.714789] SLOW spr round 3 (radius: 5)
[04:06:18 -108582.530383] SLOW spr round 4 (radius: 5)
[04:09:34 -108582.530368] SLOW spr round 5 (radius: 10)
[04:13:00 -108576.195812] SLOW spr round 6 (radius: 5)
[04:17:33 -108570.153333] SLOW spr round 7 (radius: 5)
[04:21:20 -108568.463925] SLOW spr round 8 (radius: 5)
[04:24:47 -108568.463917] SLOW spr round 9 (radius: 10)
[04:28:13 -108568.463917] SLOW spr round 10 (radius: 15)
[04:34:12 -108568.463917] SLOW spr round 11 (radius: 20)
[04:44:57 -108568.463917] SLOW spr round 12 (radius: 25)
[04:51:23] [worker #1] ML tree search #12, logLikelihood: -108580.544899
[04:52:42] [worker #4] ML tree search #15, logLikelihood: -108565.499178
[04:59:00 -108568.463917] Model parameter optimization (eps = 0.100000)

[04:59:14] [worker #0] ML tree search #11, logLikelihood: -108568.057074

[04:59:15 -434120.517468] Initial branch length optimization
[04:59:22 -380311.868387] Model parameter optimization (eps = 10.000000)
[05:01:11 -378176.912642] AUTODETECT spr round 1 (radius: 5)
[05:01:41] [worker #3] ML tree search #14, logLikelihood: -108603.818685
[05:05:20 -252641.584533] AUTODETECT spr round 2 (radius: 10)
[05:09:36 -170551.163647] AUTODETECT spr round 3 (radius: 15)
[05:14:12 -135321.161719] AUTODETECT spr round 4 (radius: 20)
[05:20:18 -128945.369796] AUTODETECT spr round 5 (radius: 25)
[05:20:45] [worker #2] ML tree search #13, logLikelihood: -108591.956589
[05:27:48 -127927.266399] SPR radius for FAST iterations: 25 (autodetect)
[05:27:48 -127927.266399] Model parameter optimization (eps = 3.000000)
[05:28:21 -127861.797882] FAST spr round 1 (radius: 25)
[05:32:12 -109519.853058] FAST spr round 2 (radius: 25)
[05:35:22 -108694.846472] FAST spr round 3 (radius: 25)
[05:38:10 -108655.093786] FAST spr round 4 (radius: 25)
[05:40:34 -108654.643423] FAST spr round 5 (radius: 25)
[05:42:54 -108654.643420] Model parameter optimization (eps = 1.000000)
[05:43:13 -108648.265757] SLOW spr round 1 (radius: 5)
[05:47:01 -108595.515466] SLOW spr round 2 (radius: 5)
[05:50:28 -108589.475045] SLOW spr round 3 (radius: 5)
[05:53:48 -108589.474943] SLOW spr round 4 (radius: 10)
[05:57:16 -108589.474942] SLOW spr round 5 (radius: 15)
[06:03:17 -108589.474942] SLOW spr round 6 (radius: 20)
[06:14:15 -108589.474942] SLOW spr round 7 (radius: 25)
[06:28:44 -108589.474942] Model parameter optimization (eps = 0.100000)

[06:28:52] [worker #0] ML tree search #16, logLikelihood: -108589.473527

[06:34:35] [worker #1] ML tree search #17, logLikelihood: -108586.856921
[06:36:55] [worker #4] ML tree search #20, logLikelihood: -108578.512957
[06:40:51] [worker #3] ML tree search #19, logLikelihood: -108599.156705
[06:51:42] [worker #2] ML tree search #18, logLikelihood: -108579.575159

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.303112,0.461375) (0.330993,0.612735) (0.289861,1.547507) (0.076034,2.745859) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -108565.499178

AIC score: 221140.998355 / AICc score: 8265200.998355 / BIC score: 228580.404525
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=302).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 32 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UKL2/3_mltree/Q9UKL2.raxml.bestTreeCollapsed
Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UKL2/3_mltree/Q9UKL2.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UKL2/3_mltree/Q9UKL2.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UKL2/3_mltree/Q9UKL2.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UKL2/3_mltree/Q9UKL2.raxml.log

Analysis started: 09-Jul-2021 12:57:32 / finished: 09-Jul-2021 19:49:14

Elapsed time: 24702.432 seconds