RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 12-Jul-2021 17:31:19 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UHX1/2_msa/Q9UHX1_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UHX1/3_mltree/Q9UHX1.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UHX1/4_raxmlng_ancestral/Q9UHX1 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626100279 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UHX1/2_msa/Q9UHX1_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 559 sites WARNING: Sequences tr_A0A1D5NV31_A0A1D5NV31_CHICK_9031 and tr_G1NK67_G1NK67_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5NV31_A0A1D5NV31_CHICK_9031 and tr_R0KTS6_R0KTS6_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5NV31_A0A1D5NV31_CHICK_9031 and tr_A0A0Q3LSX5_A0A0Q3LSX5_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A1D5NV31_A0A1D5NV31_CHICK_9031 and tr_A0A091ULT5_A0A091ULT5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5NV31_A0A1D5NV31_CHICK_9031 and tr_A0A087QTA8_A0A087QTA8_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5NV31_A0A1D5NV31_CHICK_9031 and tr_A0A0A0A4I0_A0A0A0A4I0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5NV31_A0A1D5NV31_CHICK_9031 and tr_A0A091HSR3_A0A091HSR3_CALAN_9244 are exactly identical! WARNING: Sequences sp_Q3UEB3_PUF60_MOUSE_10090 and sp_Q9WV25_PUF60_RAT_10116 are exactly identical! WARNING: Sequences tr_M3YSJ7_M3YSJ7_MUSPF_9669 and tr_G1LYP7_G1LYP7_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YSJ7_M3YSJ7_MUSPF_9669 and tr_A0A2I2UUL7_A0A2I2UUL7_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YSJ7_M3YSJ7_MUSPF_9669 and tr_A0A2Y9ITF7_A0A2Y9ITF7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3HMJ8_A0A2I3HMJ8_NOMLE_61853 and tr_A0A2I2ZC99_A0A2I2ZC99_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HMJ8_A0A2I3HMJ8_NOMLE_61853 and sp_Q9UHX1_PUF60_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HMJ8_A0A2I3HMJ8_NOMLE_61853 and tr_A0A1D5QV23_A0A1D5QV23_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3HMJ8_A0A2I3HMJ8_NOMLE_61853 and tr_A0A2K5MFC0_A0A2K5MFC0_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3HMJ8_A0A2I3HMJ8_NOMLE_61853 and tr_A0A2K6BRI7_A0A2K6BRI7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3HMJ8_A0A2I3HMJ8_NOMLE_61853 and tr_A0A2R9AA46_A0A2R9AA46_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q1DXH0_PABP_COCIM_246410 and tr_E9DFJ0_E9DFJ0_COCPS_443226 are exactly identical! WARNING: Sequences tr_B6QBT2_B6QBT2_TALMQ_441960 and tr_A0A093VB82_A0A093VB82_TALMA_1077442 are exactly identical! WARNING: Sequences tr_G3QN25_G3QN25_GORGO_9595 and tr_H2N7W0_H2N7W0_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QN25_G3QN25_GORGO_9595 and tr_H2QZS4_H2QZS4_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QN25_G3QN25_GORGO_9595 and tr_A0A2R9CJF4_A0A2R9CJF4_PANPA_9597 are exactly identical! WARNING: Sequences tr_Q29FG8_Q29FG8_DROPS_46245 and tr_B4H1B8_B4H1B8_DROPE_7234 are exactly identical! WARNING: Sequences tr_W5QFP1_W5QFP1_SHEEP_9940 and tr_A0A286ZIZ4_A0A286ZIZ4_PIG_9823 are exactly identical! WARNING: Sequences tr_J4ULE3_J4ULE3_BEAB2_655819 and tr_A0A0A2VVW9_A0A0A2VVW9_BEABA_1245745 are exactly identical! WARNING: Sequences tr_J4ULE3_J4ULE3_BEAB2_655819 and tr_A0A2N6NIM9_A0A2N6NIM9_BEABA_176275 are exactly identical! WARNING: Sequences tr_A0A158NVT8_A0A158NVT8_ATTCE_12957 and tr_A0A195BB57_A0A195BB57_9HYME_520822 are exactly identical! WARNING: Sequences sp_Q2UK72_PABP_ASPOR_510516 and tr_A0A1S9DLW3_A0A1S9DLW3_ASPOZ_5062 are exactly identical! WARNING: Sequences sp_A2Q848_PABP_ASPNC_425011 and tr_A0A146FQY9_A0A146FQY9_9EURO_1069201 are exactly identical! WARNING: Sequences tr_F6QKE0_F6QKE0_MACMU_9544 and tr_A0A096NDE7_A0A096NDE7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6QKE0_F6QKE0_MACMU_9544 and tr_A0A0D9S7P0_A0A0D9S7P0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6QKE0_F6QKE0_MACMU_9544 and tr_A0A2K5NNJ0_A0A2K5NNJ0_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6QKE0_F6QKE0_MACMU_9544 and tr_A0A2K6DWS0_A0A2K6DWS0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6QKE0_F6QKE0_MACMU_9544 and tr_A0A2K5ZZ67_A0A2K5ZZ67_MANLE_9568 are exactly identical! WARNING: Sequences tr_G7XP18_G7XP18_ASPKW_1033177 and tr_G3XRJ6_G3XRJ6_ASPNA_380704 are exactly identical! WARNING: Sequences tr_G7XP18_G7XP18_ASPKW_1033177 and tr_A0A100I2A4_A0A100I2A4_ASPNG_5061 are exactly identical! WARNING: Sequences tr_G7XP18_G7XP18_ASPKW_1033177 and tr_A0A1L9NCY5_A0A1L9NCY5_ASPTU_767770 are exactly identical! WARNING: Sequences tr_G7XP18_G7XP18_ASPKW_1033177 and tr_A0A317WGG0_A0A317WGG0_9EURO_1448314 are exactly identical! WARNING: Sequences tr_G7XP18_G7XP18_ASPKW_1033177 and tr_A0A318ZWN0_A0A318ZWN0_9EURO_1450533 are exactly identical! WARNING: Sequences tr_G5C4Y5_G5C4Y5_HETGA_10181 and tr_A0A091DK51_A0A091DK51_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G3SL64_G3SL64_LOXAF_9785 and tr_A0A2Y9N8D9_A0A2Y9N8D9_DELLE_9749 are exactly identical! WARNING: Sequences tr_F4WTD4_F4WTD4_ACREC_103372 and tr_A0A151IYR9_A0A151IYR9_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A0E0QP07_A0A0E0QP07_ORYRU_4529 and tr_Q6H443_Q6H443_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_G2YIW5_G2YIW5_BOTF4_999810 and tr_M7UAI6_M7UAI6_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_F2SQN1_F2SQN1_TRIRC_559305 and tr_A0A178EWR5_A0A178EWR5_TRIRU_5551 are exactly identical! WARNING: Sequences tr_A0A0D2XH20_A0A0D2XH20_FUSO4_426428 and tr_X0DXG8_X0DXG8_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_A0A0D2XH20_A0A0D2XH20_FUSO4_426428 and tr_A0A2H3TDJ3_A0A2H3TDJ3_FUSOX_5507 are exactly identical! WARNING: Sequences tr_A0A0D2XH20_A0A0D2XH20_FUSO4_426428 and tr_A0A2H3GZ10_A0A2H3GZ10_FUSOX_327505 are exactly identical! WARNING: Sequences tr_S0ECN3_S0ECN3_GIBF5_1279085 and tr_A0A365NFN8_A0A365NFN8_GIBIN_948311 are exactly identical! WARNING: Sequences tr_W2RI05_W2RI05_PHYPN_761204 and tr_A0A0W8C9W7_A0A0W8C9W7_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2RI05_W2RI05_PHYPN_761204 and tr_W2JUE6_W2JUE6_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A3B6KH71_A0A3B6KH71_WHEAT_4565 and tr_A0A3B6LKS5_A0A3B6LKS5_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A3B6KH71_A0A3B6KH71_WHEAT_4565 and tr_A0A3B6MQA1_A0A3B6MQA1_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A015LJ51_A0A015LJ51_9GLOM_1432141 and tr_A0A2I1FYG3_A0A2I1FYG3_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A044TDF5_A0A044TDF5_ONCVO_6282 and tr_A0A182E4Y4_A0A182E4Y4_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A094F7W0_A0A094F7W0_9PEZI_1420912 and tr_A0A1B8GDJ8_A0A1B8GDJ8_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A094F7W0_A0A094F7W0_9PEZI_1420912 and tr_A0A1B8EL08_A0A1B8EL08_9PEZI_1622149 are exactly identical! WARNING: Sequences tr_A0A0D9R949_A0A0D9R949_CHLSB_60711 and tr_A0A2K5ZV27_A0A2K5ZV27_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0F9XAT1_A0A0F9XAT1_TRIHA_5544 and tr_A0A2T4AGK4_A0A2T4AGK4_TRIHA_983964 are exactly identical! WARNING: Sequences tr_A0A0F8TY37_A0A0F8TY37_9EURO_308745 and tr_A0A2T5LWD9_A0A2T5LWD9_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0K0F035_A0A0K0F035_STRVS_75913 and tr_A0A0N5BGK6_A0A0N5BGK6_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0V0SJH9_A0A0V0SJH9_9BILA_6336 and tr_A0A0V0WVK1_A0A0V0WVK1_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0SJH9_A0A0V0SJH9_9BILA_6336 and tr_A0A0V0V8S9_A0A0V0V8S9_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0SJH9_A0A0V0SJH9_9BILA_6336 and tr_A0A0V1LSJ7_A0A0V1LSJ7_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0SJH9_A0A0V0SJH9_9BILA_6336 and tr_A0A0V1P841_A0A0V1P841_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0W9C0_A0A0V0W9C0_9BILA_92179 and tr_A0A0V1L6P3_A0A0V1L6P3_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1AFQ2_A0A0V1AFQ2_9BILA_990121 and tr_A0A0V1P923_A0A0V1P923_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A117NPK5_A0A117NPK5_9EURO_48697 and tr_A0A1V6NJS6_A0A1V6NJS6_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A151WQ56_A0A151WQ56_9HYME_64791 and tr_A0A195C5G5_A0A195C5G5_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A1S4B6E2_A0A1S4B6E2_TOBAC_4097 and tr_A0A1J6IL06_A0A1J6IL06_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S4B6E2_A0A1S4B6E2_TOBAC_4097 and tr_A0A1U7YCY9_A0A1U7YCY9_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4C155_A0A1S4C155_TOBAC_4097 and tr_A0A1U7YBD3_A0A1U7YBD3_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1V8TZW8_A0A1V8TZW8_9PEZI_1974281 and tr_A0A1V8UJ98_A0A1V8UJ98_9PEZI_1974281 are exactly identical! WARNING: Sequences tr_A0A2G5HQU8_A0A2G5HQU8_CERBT_122368 and tr_A0A2S6BUK2_A0A2S6BUK2_9PEZI_357750 are exactly identical! WARNING: Sequences tr_A0A2S7P2K0_A0A2S7P2K0_9HELO_2070414 and tr_A0A2S7QSK6_A0A2S7QSK6_9HELO_2070412 are exactly identical! WARNING: Sequences tr_A0A2V5IQV3_A0A2V5IQV3_9EURO_1450541 and tr_A0A2V5HDY0_A0A2V5HDY0_9EURO_1450538 are exactly identical! WARNING: Duplicate sequences found: 76 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UHX1/4_raxmlng_ancestral/Q9UHX1.raxml.reduced.phy Alignment comprises 1 partitions and 559 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 559 Gaps: 34.92 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UHX1/4_raxmlng_ancestral/Q9UHX1.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UHX1/3_mltree/Q9UHX1.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 140 / 11200 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -172924.070195 [00:00:00 -172924.070195] Initial branch length optimization [00:00:01 -171412.580202] Model parameter optimization (eps = 0.100000) [00:00:52] Tree #1, final logLikelihood: -170380.162066 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.153960,0.518636) (0.115296,1.173067) (0.316813,0.619667) (0.413932,1.421932) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UHX1/4_raxmlng_ancestral/Q9UHX1.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UHX1/4_raxmlng_ancestral/Q9UHX1.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UHX1/4_raxmlng_ancestral/Q9UHX1.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9UHX1/4_raxmlng_ancestral/Q9UHX1.raxml.log Analysis started: 12-Jul-2021 17:31:19 / finished: 12-Jul-2021 17:32:16 Elapsed time: 57.428 seconds Consumed energy: 4.525 Wh