RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 17-Jul-2021 08:40:02 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UD57/2_msa/Q9UD57_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UD57/3_mltree/Q9UD57.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UD57/4_raxmlng_ancestral/Q9UD57 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626500402 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UD57/2_msa/Q9UD57_nogap_msa.fasta [00:00:00] Loaded alignment with 1000 taxa and 310 sites WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A226NNY5_A0A226NNY5_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A226P0E4_A0A226P0E4_COLVI_9014 are exactly identical! WARNING: Sequences sp_P48031_GBX2_MOUSE_10090 and tr_G1RI92_G1RI92_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P48031_GBX2_MOUSE_10090 and tr_H2QJN8_H2QJN8_PANTR_9598 are exactly identical! WARNING: Sequences sp_P48031_GBX2_MOUSE_10090 and sp_P52951_GBX2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P48031_GBX2_MOUSE_10090 and tr_A0A096N887_A0A096N887_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P48031_GBX2_MOUSE_10090 and tr_A0A0D9R1N1_A0A0D9R1N1_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P48031_GBX2_MOUSE_10090 and tr_A0A1U7QMR2_A0A1U7QMR2_MESAU_10036 are exactly identical! WARNING: Sequences sp_P48031_GBX2_MOUSE_10090 and tr_A0A2K5M8U4_A0A2K5M8U4_CERAT_9531 are exactly identical! WARNING: Sequences sp_P48031_GBX2_MOUSE_10090 and tr_A0A2K6CRE5_A0A2K6CRE5_MACNE_9545 are exactly identical! WARNING: Sequences sp_P63157_BARH1_MOUSE_10090 and sp_P63156_BARH1_RAT_10116 are exactly identical! WARNING: Sequences sp_P63157_BARH1_MOUSE_10090 and tr_A0A1U8CWE9_A0A1U8CWE9_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YM78_M3YM78_MUSPF_9669 and tr_A0A2Y9JDE4_A0A2Y9JDE4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A3B3IK57_A0A3B3IK57_ORYLA_8090 and tr_I3K5I0_I3K5I0_ORENI_8128 are exactly identical! WARNING: Sequences tr_G1RH20_G1RH20_NOMLE_61853 and tr_H2N6T3_H2N6T3_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RH20_G1RH20_NOMLE_61853 and tr_H2PZD7_H2PZD7_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RH20_G1RH20_NOMLE_61853 and sp_Q9NY43_BARH2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RH20_G1RH20_NOMLE_61853 and tr_F7CVL1_F7CVL1_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1RH20_G1RH20_NOMLE_61853 and tr_A0A096MND3_A0A096MND3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RH20_G1RH20_NOMLE_61853 and tr_A0A0D9S6S8_A0A0D9S6S8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RH20_G1RH20_NOMLE_61853 and tr_A0A2K5NIZ9_A0A2K5NIZ9_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RH20_G1RH20_NOMLE_61853 and tr_A0A2K6DCN4_A0A2K6DCN4_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RH20_G1RH20_NOMLE_61853 and tr_A0A2K5YJ88_A0A2K5YJ88_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RH20_G1RH20_NOMLE_61853 and tr_A0A2R9B1X9_A0A2R9B1X9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RQV8_G1RQV8_NOMLE_61853 and tr_H0WP37_H0WP37_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1RQV8_G1RQV8_NOMLE_61853 and tr_H0W932_H0W932_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G1RQV8_G1RQV8_NOMLE_61853 and tr_A0A096P0E1_A0A096P0E1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RQV8_G1RQV8_NOMLE_61853 and tr_A0A0D9RR12_A0A0D9RR12_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RQV8_G1RQV8_NOMLE_61853 and tr_A0A2K6E700_A0A2K6E700_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RQV8_G1RQV8_NOMLE_61853 and tr_A0A2K5XR01_A0A2K5XR01_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QZ20_G3QZ20_GORGO_9595 and tr_A0A2J8NAK0_A0A2J8NAK0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QZ20_G3QZ20_GORGO_9595 and sp_Q9BZE3_BARH1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2NFV4_H2NFV4_PONAB_9601 and tr_H2Q542_H2Q542_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2NFV4_H2NFV4_PONAB_9601 and sp_Q9UMQ3_BARX2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2NFV4_H2NFV4_PONAB_9601 and tr_F7ALP0_F7ALP0_CALJA_9483 are exactly identical! WARNING: Sequences tr_H2NFV4_H2NFV4_PONAB_9601 and tr_A0A096NDG7_A0A096NDG7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2NFV4_H2NFV4_PONAB_9601 and tr_A0A1U7TWP8_A0A1U7TWP8_TARSY_1868482 are exactly identical! WARNING: Sequences tr_H2NFV4_H2NFV4_PONAB_9601 and tr_A0A2K5NU13_A0A2K5NU13_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2NFV4_H2NFV4_PONAB_9601 and tr_A0A2K6AR14_A0A2K6AR14_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2NFV4_H2NFV4_PONAB_9601 and tr_A0A2R9A129_A0A2R9A129_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1SLB0_G1SLB0_RABIT_9986 and sp_O88181_BARH2_RAT_10116 are exactly identical! WARNING: Sequences tr_G1SLB0_G1SLB0_RABIT_9986 and tr_I3MWD3_I3MWD3_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1SLB0_G1SLB0_RABIT_9986 and tr_G3SUC2_G3SUC2_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1SLB0_G1SLB0_RABIT_9986 and tr_F1S4E7_F1S4E7_PIG_9823 are exactly identical! WARNING: Sequences tr_G1SLB0_G1SLB0_RABIT_9986 and tr_G1LPY4_G1LPY4_AILME_9646 are exactly identical! WARNING: Sequences tr_G1SLB0_G1SLB0_RABIT_9986 and tr_M3X0Z3_M3X0Z3_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1SLB0_G1SLB0_RABIT_9986 and tr_A0A2U3W3J0_A0A2U3W3J0_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1SLB0_G1SLB0_RABIT_9986 and tr_A0A2U3YB90_A0A2U3YB90_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1SLB0_G1SLB0_RABIT_9986 and tr_A0A2Y9DQ22_A0A2Y9DQ22_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G1SLB0_G1SLB0_RABIT_9986 and tr_A0A2Y9J0K4_A0A2Y9J0K4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_B5DKY5_B5DKY5_DROPS_46245 and tr_B4HBI8_B4HBI8_DROPE_7234 are exactly identical! WARNING: Sequences tr_E2QSL9_E2QSL9_CANLF_9615 and tr_I3NBW7_I3NBW7_ICTTR_43179 are exactly identical! WARNING: Sequences tr_E2QSL9_E2QSL9_CANLF_9615 and tr_M3W741_M3W741_FELCA_9685 are exactly identical! WARNING: Sequences tr_E2RC01_E2RC01_CANLF_9615 and tr_F7E252_F7E252_HORSE_9796 are exactly identical! WARNING: Sequences tr_E2RC01_E2RC01_CANLF_9615 and tr_L5KU72_L5KU72_PTEAL_9402 are exactly identical! WARNING: Sequences tr_E2RC01_E2RC01_CANLF_9615 and tr_A0A2U3V6E9_A0A2U3V6E9_TURTR_9739 are exactly identical! WARNING: Sequences tr_E2RC01_E2RC01_CANLF_9615 and tr_A0A2Y9MXJ4_A0A2Y9MXJ4_DELLE_9749 are exactly identical! WARNING: Sequences tr_E2RC01_E2RC01_CANLF_9615 and tr_A0A2Y9EZ26_A0A2Y9EZ26_PHYCD_9755 are exactly identical! WARNING: Sequences tr_H2R4U3_H2R4U3_PANTR_9598 and sp_P50219_MNX1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F6T8B5_F6T8B5_MONDO_13616 and tr_G3VXN4_G3VXN4_SARHA_9305 are exactly identical! WARNING: Sequences tr_B0WX00_B0WX00_CULQU_7176 and tr_B0X769_B0X769_CULQU_7176 are exactly identical! WARNING: Sequences tr_A0A3B5QV28_A0A3B5QV28_XIPMA_8083 and tr_A0A087XD99_A0A087XD99_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A158P1U3_A0A158P1U3_ATTCE_12957 and tr_F4W6R6_F4W6R6_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158P4A0_A0A158P4A0_ATTCE_12957 and tr_A0A195B3V8_A0A195B3V8_9HYME_520822 are exactly identical! WARNING: Sequences tr_E5SE94_E5SE94_TRISP_6334 and tr_E5SEA2_E5SEA2_TRISP_6334 are exactly identical! WARNING: Sequences tr_H0Z5L1_H0Z5L1_TAEGU_59729 and tr_U3JNJ3_U3JNJ3_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZYT4_H0ZYT4_TAEGU_59729 and tr_A0A091FHQ3_A0A091FHQ3_CORBR_85066 are exactly identical! WARNING: Sequences tr_E3LCQ4_E3LCQ4_CAERE_31234 and tr_A0A261CT28_A0A261CT28_9PELO_1503980 are exactly identical! WARNING: Sequences tr_E3LCQ5_E3LCQ5_CAERE_31234 and tr_A0A261CSR2_A0A261CSR2_9PELO_1503980 are exactly identical! WARNING: Sequences sp_A8XJD0_HM30_CAEBR_6238 and tr_A0A2G5SRF9_A0A2G5SRF9_9PELO_1611254 are exactly identical! WARNING: Sequences tr_A0A091EHG0_A0A091EHG0_CORBR_85066 and tr_A0A091FUR1_A0A091FUR1_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091EHG0_A0A091EHG0_CORBR_85066 and tr_A0A093IGR2_A0A093IGR2_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091EHG0_A0A091EHG0_CORBR_85066 and tr_A0A091I239_A0A091I239_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091J8K4_A0A091J8K4_EGRGA_188379 and tr_A0A091VFZ6_A0A091VFZ6_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091JPD0_A0A091JPD0_EGRGA_188379 and tr_A0A091UUR7_A0A091UUR7_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A0V1CW42_A0A0V1CW42_TRIBR_45882 and tr_A0A0V0V280_A0A0V0V280_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CW42_A0A0V1CW42_TRIBR_45882 and tr_A0A0V1PIC0_A0A0V1PIC0_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1CW42_A0A0V1CW42_TRIBR_45882 and tr_A0A0V0U2J3_A0A0V0U2J3_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1DF76_A0A0V1DF76_TRIBR_45882 and tr_A0A0V0WC09_A0A0V0WC09_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1DF76_A0A0V1DF76_TRIBR_45882 and tr_A0A0V0W039_A0A0V0W039_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1DF76_A0A0V1DF76_TRIBR_45882 and tr_A0A0V1A0Z8_A0A0V1A0Z8_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1DF76_A0A0V1DF76_TRIBR_45882 and tr_A0A0V0U7E1_A0A0V0U7E1_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0XAK9_A0A0V0XAK9_9BILA_92179 and tr_A0A0V1LM10_A0A0V1LM10_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0VKK0_A0A0V0VKK0_9BILA_181606 and tr_A0A0V1PHR6_A0A0V1PHR6_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0VKK0_A0A0V0VKK0_9BILA_181606 and tr_A0A0V0TYQ3_A0A0V0TYQ3_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1EHR3_A0A0V1EHR3_TRIPS_6337 and tr_A0A0V1HFY0_A0A0V1HFY0_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0V1N6J5_A0A0V1N6J5_9BILA_268474 and tr_A0A0V1HIB2_A0A0V1HIB2_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3MXV7_A0A1S3MXV7_SALSA_8030 and tr_A0A060YXD3_A0A060YXD3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3N430_A0A1S3N430_SALSA_8030 and tr_A0A060VU32_A0A060VU32_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3PAJ0_A0A1S3PAJ0_SALSA_8030 and tr_A0A060WHX8_A0A060WHX8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MEG4_A0A226MEG4_CALSU_9009 and tr_A0A226PML7_A0A226PML7_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MHL4_A0A226MHL4_CALSU_9009 and tr_A0A226PN76_A0A226PN76_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2U3V4K3_A0A2U3V4K3_TURTR_9739 and tr_A0A2Y9LPU6_A0A2Y9LPU6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V4K3_A0A2U3V4K3_TURTR_9739 and tr_A0A2Y9EMN4_A0A2Y9EMN4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3V4K3_A0A2U3V4K3_TURTR_9739 and tr_A0A383ZNC1_A0A383ZNC1_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4A555_A0A2U4A555_TURTR_9739 and tr_A0A2Y9NJ17_A0A2Y9NJ17_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3VD22_A0A2U3VD22_ODORO_9708 and tr_A0A2U3YK34_A0A2U3YK34_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 97 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UD57/4_raxmlng_ancestral/Q9UD57.raxml.reduced.phy Alignment comprises 1 partitions and 310 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 310 Gaps: 52.48 % Invariant sites: 0.32 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UD57/4_raxmlng_ancestral/Q9UD57.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UD57/3_mltree/Q9UD57.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 78 / 6240 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -222223.212704 [00:00:00 -222223.212704] Initial branch length optimization [00:00:02 -100950.716310] Model parameter optimization (eps = 0.100000) [00:00:51] Tree #1, final logLikelihood: -100753.985628 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.117325,0.102571) (0.107712,0.146023) (0.220032,0.679512) (0.554932,1.482566) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UD57/4_raxmlng_ancestral/Q9UD57.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UD57/4_raxmlng_ancestral/Q9UD57.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UD57/4_raxmlng_ancestral/Q9UD57.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9UD57/4_raxmlng_ancestral/Q9UD57.raxml.log Analysis started: 17-Jul-2021 08:40:02 / finished: 17-Jul-2021 08:40:56 Elapsed time: 53.988 seconds