RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 12-Jul-2021 18:10:54 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/2_msa/Q9P2H5_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/3_mltree/Q9P2H5.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/4_raxmlng_ancestral/Q9P2H5 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626102654 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/2_msa/Q9P2H5_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 1018 sites WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_H0ZC05_H0ZC05_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A0Q3USU9_A0A0Q3USU9_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A093Q5N0_A0A093Q5N0_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A091X2T4_A0A091X2T4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A087QYG9_A0A087QYG9_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A091H938_A0A091H938_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A091HTX7_A0A091HTX7_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A1V4JG08_A0A1V4JG08_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A218VFF5_A0A218VFF5_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A226PWH3_A0A226PWH3_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5P1U8_A0A1D5P1U8_CHICK_9031 and sp_Q5ZM45_UBP48_CHICK_9031 are exactly identical! WARNING: Sequences tr_A0A1D5PK45_A0A1D5PK45_CHICK_9031 and tr_A0A0Q3QM46_A0A0Q3QM46_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_K7G5M8_K7G5M8_PELSI_13735 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_A0A151NNF5_A0A151NNF5_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_A0A1U7SHX4_A0A1U7SHX4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_A0A226NJE1_A0A226NJE1_CALSU_9009 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_G1R9R1_G1R9R1_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and sp_Q5RBQ4_UBP46_PONAB_9601 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_F7EMC3_F7EMC3_MONDO_13616 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and sp_F1M625_UBP46_RAT_10116 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A287DDV5_A0A287DDV5_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and sp_P62068_UBP46_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_U3C385_U3C385_CALJA_9483 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A287B0Z4_A0A287B0Z4_PIG_9823 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A337S537_A0A337S537_FELCA_9685 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A096NYM6_A0A096NYM6_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A0D9QY46_A0A0D9QY46_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A1S3ASK3_A0A1S3ASK3_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A1S3EL05_A0A1S3EL05_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A2K5KPF5_A0A2K5KPF5_CERAT_9531 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A2K6APW0_A0A2K6APW0_MACNE_9545 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A2U3VMR5_A0A2U3VMR5_ODORO_9708 are exactly identical! WARNING: Sequences tr_H2L472_H2L472_ORYLA_8090 and tr_A0A087YIP7_A0A087YIP7_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2LY59_H2LY59_ORYLA_8090 and tr_I3K9G8_I3K9G8_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2LY59_H2LY59_ORYLA_8090 and tr_G3NFJ7_G3NFJ7_GASAC_69293 are exactly identical! WARNING: Sequences tr_H2LY59_H2LY59_ORYLA_8090 and tr_A0A2I4AQD2_A0A2I4AQD2_9TELE_52670 are exactly identical! WARNING: Sequences tr_H2LY59_H2LY59_ORYLA_8090 and tr_A0A2U9CVL9_A0A2U9CVL9_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A2I3HM89_A0A2I3HM89_NOMLE_61853 and tr_G3RU24_G3RU24_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HM89_A0A2I3HM89_NOMLE_61853 and tr_H2N8P6_H2N8P6_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3HM89_A0A2I3HM89_NOMLE_61853 and tr_F1PG27_F1PG27_CANLF_9615 are exactly identical! WARNING: Sequences tr_A0A2I3HM89_A0A2I3HM89_NOMLE_61853 and tr_H2PY94_H2PY94_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HM89_A0A2I3HM89_NOMLE_61853 and sp_Q86UV5_UBP48_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HM89_A0A2I3HM89_NOMLE_61853 and tr_F7H9B6_F7H9B6_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3HM89_A0A2I3HM89_NOMLE_61853 and tr_G3TZC1_G3TZC1_LOXAF_9785 are exactly identical! WARNING: Sequences tr_A0A2I3HM89_A0A2I3HM89_NOMLE_61853 and tr_A0A0D9S8B3_A0A0D9S8B3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3HM89_A0A2I3HM89_NOMLE_61853 and tr_A0A2R9A2H4_A0A2R9A2H4_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2NJG9_H2NJG9_PONAB_9601 and sp_O75317_UBP12_HUMAN_9606 are exactly identical! WARNING: Sequences tr_I6L5A2_I6L5A2_PONAB_9601 and tr_A0A384A0G7_A0A384A0G7_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2I3RPX2_A0A2I3RPX2_PANTR_9598 and tr_A0A2R8ZDS4_A0A2R8ZDS4_PANPA_9597 are exactly identical! WARNING: Sequences tr_K7ALA5_K7ALA5_PANTR_9598 and tr_A0A2R9A6E3_A0A2R9A6E3_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6WU07_F6WU07_HORSE_9796 and tr_H0WZ61_H0WZ61_OTOGA_30611 are exactly identical! WARNING: Sequences tr_F6WU07_F6WU07_HORSE_9796 and tr_G5AU60_G5AU60_HETGA_10181 are exactly identical! WARNING: Sequences tr_I3MH73_I3MH73_ICTTR_43179 and tr_G3SZK6_G3SZK6_LOXAF_9785 are exactly identical! WARNING: Sequences tr_I3MH73_I3MH73_ICTTR_43179 and tr_G3WU90_G3WU90_SARHA_9305 are exactly identical! WARNING: Sequences tr_I3MH73_I3MH73_ICTTR_43179 and tr_A0A337S8T1_A0A337S8T1_FELCA_9685 are exactly identical! WARNING: Sequences tr_I3MH73_I3MH73_ICTTR_43179 and tr_A0A2U3WYL2_A0A2U3WYL2_ODORO_9708 are exactly identical! WARNING: Sequences tr_H2SGM4_H2SGM4_TAKRU_31033 and tr_H3D599_H3D599_TETNG_99883 are exactly identical! WARNING: Sequences tr_J3LYF9_J3LYF9_ORYBR_4533 and tr_A2XU37_A2XU37_ORYSI_39946 are exactly identical! WARNING: Sequences tr_J3LYF9_J3LYF9_ORYBR_4533 and tr_I1PLS5_I1PLS5_ORYGL_4538 are exactly identical! WARNING: Sequences tr_J3LYF9_J3LYF9_ORYBR_4533 and tr_A0A0E0P9Y0_A0A0E0P9Y0_ORYRU_4529 are exactly identical! WARNING: Sequences tr_J3LYF9_J3LYF9_ORYBR_4533 and tr_A0A0D3FWI1_A0A0D3FWI1_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_J3LYF9_J3LYF9_ORYBR_4533 and tr_A0A0E0KRB1_A0A0E0KRB1_ORYPU_4537 are exactly identical! WARNING: Sequences tr_J3LYF9_J3LYF9_ORYBR_4533 and tr_Q0JCS2_Q0JCS2_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0G281_A0A0E0G281_ORYNI_4536 and tr_A2XDE6_A2XDE6_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0G281_A0A0E0G281_ORYNI_4536 and tr_I1P8E2_I1P8E2_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0G281_A0A0E0G281_ORYNI_4536 and tr_A0A0E0CWH3_A0A0E0CWH3_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0G281_A0A0E0G281_ORYNI_4536 and tr_A0A0E0NQU3_A0A0E0NQU3_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0G281_A0A0E0G281_ORYNI_4536 and tr_A0A0D3FEU5_A0A0D3FEU5_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0G281_A0A0E0G281_ORYNI_4536 and tr_A0A0D9Z391_A0A0D9Z391_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0G281_A0A0E0G281_ORYNI_4536 and tr_Q8H7M6_Q8H7M6_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_F6Q231_F6Q231_MACMU_9544 and tr_G7P6C3_G7P6C3_MACFA_9541 are exactly identical! WARNING: Sequences tr_H9EXL0_H9EXL0_MACMU_9544 and tr_A0A096NT88_A0A096NT88_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H9EXL0_H9EXL0_MACMU_9544 and tr_A0A2K5NX51_A0A2K5NX51_CERAT_9531 are exactly identical! WARNING: Sequences tr_H9EXL0_H9EXL0_MACMU_9544 and tr_A0A2K6AH76_A0A2K6AH76_MANLE_9568 are exactly identical! WARNING: Sequences tr_F4PE09_F4PE09_BATDJ_684364 and tr_A0A177WI39_A0A177WI39_BATDE_403673 are exactly identical! WARNING: Sequences tr_H0Z5S9_H0Z5S9_TAEGU_59729 and tr_A0A218UUH6_A0A218UUH6_9PASE_299123 are exactly identical! WARNING: Sequences tr_M4D2E7_M4D2E7_BRARP_51351 and tr_A0A078JQ01_A0A078JQ01_BRANA_3708 are exactly identical! WARNING: Sequences tr_M7ZA75_M7ZA75_TRIUA_4572 and tr_A0A3B6B228_A0A3B6B228_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A2I3MWQ1_A0A2I3MWQ1_PAPAN_9555 and tr_A0A2K6D8Z9_A0A2K6D8Z9_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3MWQ1_A0A2I3MWQ1_PAPAN_9555 and tr_A0A2K5YTL2_A0A2K5YTL2_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0D9S156_A0A0D9S156_CHLSB_60711 and tr_A0A2K6CAL9_A0A2K6CAL9_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0A0KXS5_A0A0A0KXS5_CUCSA_3659 and tr_A0A1S3C0V6_A0A1S3C0V6_CUCME_3656 are exactly identical! WARNING: Sequences tr_A0A0D2RQ24_A0A0D2RQ24_GOSRA_29730 and tr_A0A1U8N7L0_A0A1U8N7L0_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A091EX30_A0A091EX30_CORBR_85066 and tr_A0A093STI0_A0A093STI0_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091EX30_A0A091EX30_CORBR_85066 and tr_A0A091VIV7_A0A091VIV7_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091EX30_A0A091EX30_CORBR_85066 and tr_A0A0A0AKC7_A0A0A0AKC7_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091EX30_A0A091EX30_CORBR_85066 and tr_A0A093GK47_A0A093GK47_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091EX30_A0A091EX30_CORBR_85066 and tr_A0A091IEB6_A0A091IEB6_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091EX30_A0A091EX30_CORBR_85066 and tr_A0A226P6U4_A0A226P6U4_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A091FUV4_A0A091FUV4_CORBR_85066 and tr_A0A093I175_A0A093I175_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091FUV4_A0A091FUV4_CORBR_85066 and tr_A0A0A0AGB9_A0A0A0AGB9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091FUV4_A0A091FUV4_CORBR_85066 and tr_A0A093G8D8_A0A093G8D8_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091JSW3_A0A091JSW3_EGRGA_188379 and tr_A0A091USC5_A0A091USC5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JSW3_A0A091JSW3_EGRGA_188379 and tr_A0A087QMA2_A0A087QMA2_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JSW3_A0A091JSW3_EGRGA_188379 and tr_A0A093I046_A0A093I046_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091JSW3_A0A091JSW3_EGRGA_188379 and tr_A0A0A0AEQ9_A0A0A0AEQ9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091JSW3_A0A091JSW3_EGRGA_188379 and tr_A0A093H0M1_A0A093H0M1_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A0L9UAX9_A0A0L9UAX9_PHAAN_3914 and tr_A0A1S3TJ07_A0A1S3TJ07_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A1S3YIS5_A0A1S3YIS5_TOBAC_4097 and tr_A0A1U7XPH6_A0A1U7XPH6_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S2WZU6_A0A1S2WZU6_SALSA_8030 and tr_A0A060XZT4_A0A060XZT4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3QAG9_A0A1S3QAG9_SALSA_8030 and sp_C0HB46_UBP12_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3QAG9_A0A1S3QAG9_SALSA_8030 and tr_A0A060YIJ5_A0A060YIJ5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3VUI8_A0A1S3VUI8_VIGRR_3916 and tr_A0A3Q0EJM5_A0A3Q0EJM5_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A226MZF8_A0A226MZF8_CALSU_9009 and tr_A0A226PCP9_A0A226PCP9_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1U8F3J0_A0A1U8F3J0_CAPAN_4072 and tr_A0A2G3B2Y7_A0A2G3B2Y7_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2K5YIL8_A0A2K5YIL8_MANLE_9568 and tr_A0A2R8ZCI8_A0A2R8ZCI8_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2U4AS04_A0A2U4AS04_TURTR_9739 and tr_A0A2Y9TDI2_A0A2Y9TDI2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4BGU6_A0A2U4BGU6_TURTR_9739 and tr_A0A2Y9NFK3_A0A2Y9NFK3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BGU6_A0A2U4BGU6_TURTR_9739 and tr_A0A2Y9SSU4_A0A2Y9SSU4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9LK33_A0A2Y9LK33_DELLE_9749 and tr_A0A2Y9EZI8_A0A2Y9EZI8_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 110 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/4_raxmlng_ancestral/Q9P2H5.raxml.reduced.phy Alignment comprises 1 partitions and 1018 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 1018 Gaps: 52.87 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/4_raxmlng_ancestral/Q9P2H5.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/3_mltree/Q9P2H5.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 255 / 20400 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -283649.091215 [00:00:00 -283649.091215] Initial branch length optimization [00:00:02 -265985.782775] Model parameter optimization (eps = 0.100000) [00:00:49] Tree #1, final logLikelihood: -265274.585338 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.076523,0.260546) (0.095182,0.264974) (0.350488,0.663341) (0.477807,1.511801) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/4_raxmlng_ancestral/Q9P2H5.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/4_raxmlng_ancestral/Q9P2H5.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/4_raxmlng_ancestral/Q9P2H5.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/4_raxmlng_ancestral/Q9P2H5.raxml.log Analysis started: 12-Jul-2021 18:10:54 / finished: 12-Jul-2021 18:11:52 Elapsed time: 58.128 seconds Consumed energy: 2.806 Wh