RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 01-Jul-2021 14:50:40 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/2_msa/Q9P2H5_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/3_mltree/Q9P2H5 --seed 2 --threads 5 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/2_msa/Q9P2H5_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 249 sites WARNING: Sequences tr_B4QCW5_B4QCW5_DROSI_7240 and tr_B4HPI9_B4HPI9_DROSE_7238 are exactly identical! WARNING: Sequences sp_A4FUN7_UBP12_DANRE_7955 and tr_A0A2D0PU67_A0A2D0PU67_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_G1NH68_G1NH68_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_H0ZC05_H0ZC05_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_U3I5E8_U3I5E8_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A0Q3USU9_A0A0Q3USU9_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A091FUV4_A0A091FUV4_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A093Q5N0_A0A093Q5N0_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A091X2T4_A0A091X2T4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A087QYG9_A0A087QYG9_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A093I175_A0A093I175_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A091H938_A0A091H938_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A0A0AGB9_A0A0A0AGB9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A2I0MM17_A0A2I0MM17_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A093G8D8_A0A093G8D8_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A091HTX7_A0A091HTX7_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A1V4JG08_A0A1V4JG08_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A218VFF5_A0A218VFF5_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A226MXM8_A0A226MXM8_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5P0C3_A0A1D5P0C3_CHICK_9031 and tr_A0A226PWH3_A0A226PWH3_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5P1U8_A0A1D5P1U8_CHICK_9031 and sp_Q5ZM45_UBP48_CHICK_9031 are exactly identical! WARNING: Sequences tr_A0A1D5P1U8_A0A1D5P1U8_CHICK_9031 and tr_G1N623_G1N623_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5P1U8_A0A1D5P1U8_CHICK_9031 and tr_A0A226MZF8_A0A226MZF8_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5P1U8_A0A1D5P1U8_CHICK_9031 and tr_A0A226PCP9_A0A226PCP9_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5PK45_A0A1D5PK45_CHICK_9031 and tr_G1NQD5_G1NQD5_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PK45_A0A1D5PK45_CHICK_9031 and tr_U3ICF0_U3ICF0_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PK45_A0A1D5PK45_CHICK_9031 and tr_A0A0Q3QM46_A0A0Q3QM46_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A1D5PK45_A0A1D5PK45_CHICK_9031 and tr_A0A091JSW3_A0A091JSW3_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5PK45_A0A1D5PK45_CHICK_9031 and tr_A0A091USC5_A0A091USC5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5PK45_A0A1D5PK45_CHICK_9031 and tr_A0A087QMA2_A0A087QMA2_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5PK45_A0A1D5PK45_CHICK_9031 and tr_A0A093I046_A0A093I046_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5PK45_A0A1D5PK45_CHICK_9031 and tr_A0A091WQX3_A0A091WQX3_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A1D5PK45_A0A1D5PK45_CHICK_9031 and tr_A0A099Z8S8_A0A099Z8S8_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1D5PK45_A0A1D5PK45_CHICK_9031 and tr_A0A0A0AEQ9_A0A0A0AEQ9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5PK45_A0A1D5PK45_CHICK_9031 and tr_A0A093H0M1_A0A093H0M1_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5PK45_A0A1D5PK45_CHICK_9031 and tr_A0A1V4K9U1_A0A1V4K9U1_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_G1N2L7_G1N2L7_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_H9G6I0_H9G6I0_ANOCA_28377 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_K7G5M8_K7G5M8_PELSI_13735 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_H0Z5S9_H0Z5S9_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_U3IL93_U3IL93_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_A0A151NNF5_A0A151NNF5_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_A0A091EX30_A0A091EX30_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_A0A091JW04_A0A091JW04_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_A0A093STI0_A0A093STI0_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_A0A091ULQ1_A0A091ULQ1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_A0A093HV87_A0A093HV87_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_A0A091VIV7_A0A091VIV7_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_A0A099Z2U2_A0A099Z2U2_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_A0A0A0AKC7_A0A0A0AKC7_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_A0A093GK47_A0A093GK47_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_A0A091IEB6_A0A091IEB6_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_A0A1U7SHX4_A0A1U7SHX4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_A0A1V4L007_A0A1V4L007_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_A0A218UUH6_A0A218UUH6_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_A0A226NJE1_A0A226NJE1_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PXG6_A0A1D5PXG6_CHICK_9031 and tr_A0A226P6U4_A0A226P6U4_COLVI_9014 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_M3Y320_M3Y320_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_G1R9R1_G1R9R1_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_G1P303_G1P303_MYOLU_59463 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_G3RLX0_G3RLX0_GORGO_9595 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_I6L5A2_I6L5A2_PONAB_9601 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and sp_Q5RBQ4_UBP46_PONAB_9601 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_G1TCV5_G1TCV5_RABIT_9986 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A2I3TI86_A0A2I3TI86_PANTR_9598 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_F7EMC3_F7EMC3_MONDO_13616 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_F6WU07_F6WU07_HORSE_9796 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_W5QB32_W5QB32_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and sp_F1M625_UBP46_RAT_10116 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A287DDV5_A0A287DDV5_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_H0WZ61_H0WZ61_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and sp_P62068_UBP46_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A1D5QNC4_A0A1D5QNC4_MACMU_9544 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_G5AU60_G5AU60_HETGA_10181 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_K7GG80_K7GG80_PELSI_13735 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_G3T9U0_G3T9U0_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_G3WXT0_G3WXT0_SARHA_9305 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_U3C385_U3C385_CALJA_9483 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A287B0Z4_A0A287B0Z4_PIG_9823 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_G1LNG3_G1LNG3_AILME_9646 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_G7P5U2_G7P5U2_MACFA_9541 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_F1MZM8_F1MZM8_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A337S537_A0A337S537_FELCA_9685 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A096NYM6_A0A096NYM6_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A091DUI0_A0A091DUI0_FUKDA_885580 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A0D9QY46_A0A0D9QY46_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A1S3ASK3_A0A1S3ASK3_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A1S3EL05_A0A1S3EL05_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A1U8CVT5_A0A1U8CVT5_ALLSI_38654 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A2K5KPF5_A0A2K5KPF5_CERAT_9531 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A2K6APW0_A0A2K6APW0_MACNE_9545 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A2K5YIL8_A0A2K5YIL8_MANLE_9568 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A2R8ZCI8_A0A2R8ZCI8_PANPA_9597 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A2U3VMR5_A0A2U3VMR5_ODORO_9708 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A2Y9JWH5_A0A2Y9JWH5_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P62069_UBP46_MOUSE_10090 and tr_A0A384A0G7_A0A384A0G7_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3Y9F1_M3Y9F1_MUSPF_9669 and tr_A0A2Y9KE39_A0A2Y9KE39_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YM65_M3YM65_MUSPF_9669 and tr_A0A2Y9KXT3_A0A2Y9KXT3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_A0A2I3HM89_A0A2I3HM89_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_G3RU24_G3RU24_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_H2N8P6_H2N8P6_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_F1PG27_F1PG27_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_H2PY94_H2PY94_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_F6Q2L2_F6Q2L2_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_W5PEW2_W5PEW2_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_H0X4G2_H0X4G2_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and sp_Q86UV5_UBP48_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_F7H9B6_F7H9B6_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_G5BI08_G5BI08_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_G3TZC1_G3TZC1_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_F1SU01_F1SU01_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_G1M752_G1M752_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_G7NUV5_G7NUV5_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_M3WUY4_M3WUY4_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_A0A091EBC1_A0A091EBC1_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_A0A0D9S8B3_A0A0D9S8B3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_A0A1S3GPJ0_A0A1S3GPJ0_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_A0A3Q0E8A4_A0A3Q0E8A4_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_A0A2K5Z4K7_A0A2K5Z4K7_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_A0A2R9A2H4_A0A2R9A2H4_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_A0A2U4BLZ8_A0A2U4BLZ8_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_A0A2Y9DM32_A0A2Y9DM32_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_A0A2Y9K964_A0A2Y9K964_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_A0A2Y9LK33_A0A2Y9LK33_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_A0A2Y9EZI8_A0A2Y9EZI8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_A0A384CE35_A0A384CE35_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YX85_M3YX85_MUSPF_9669 and tr_A0A383ZJ16_A0A383ZJ16_BALAS_310752 are exactly identical! WARNING: Sequences tr_C5Y9P6_C5Y9P6_SORBI_4558 and tr_K3Y860_K3Y860_SETIT_4555 are exactly identical! WARNING: Sequences tr_C5Y9P6_C5Y9P6_SORBI_4558 and tr_B6TEU9_B6TEU9_MAIZE_4577 are exactly identical! WARNING: Sequences tr_C5Y9P6_C5Y9P6_SORBI_4558 and tr_A0A2T7CVQ9_A0A2T7CVQ9_9POAL_1504633 are exactly identical! WARNING: Sequences tr_H2L472_H2L472_ORYLA_8090 and tr_I3J4K7_I3J4K7_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2L472_H2L472_ORYLA_8090 and tr_A0A087YIP7_A0A087YIP7_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2L472_H2L472_ORYLA_8090 and tr_A0A2I4CZZ7_A0A2I4CZZ7_9TELE_52670 are exactly identical! WARNING: Sequences tr_H2LY59_H2LY59_ORYLA_8090 and tr_I3K9G8_I3K9G8_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2LY59_H2LY59_ORYLA_8090 and tr_H2SGM4_H2SGM4_TAKRU_31033 are exactly identical! WARNING: Sequences tr_H2LY59_H2LY59_ORYLA_8090 and tr_H3D599_H3D599_TETNG_99883 are exactly identical! WARNING: Sequences tr_H2LY59_H2LY59_ORYLA_8090 and tr_G3NFJ7_G3NFJ7_GASAC_69293 are exactly identical! WARNING: Sequences tr_H2LY59_H2LY59_ORYLA_8090 and tr_A0A087XQ67_A0A087XQ67_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2LY59_H2LY59_ORYLA_8090 and tr_A0A2I4AQD2_A0A2I4AQD2_9TELE_52670 are exactly identical! WARNING: Sequences tr_H2LY59_H2LY59_ORYLA_8090 and tr_A0A2U9CVL9_A0A2U9CVL9_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A2I3HF04_A0A2I3HF04_NOMLE_61853 and tr_H2NJG9_H2NJG9_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3HF04_A0A2I3HF04_NOMLE_61853 and tr_G1SSC1_G1SSC1_RABIT_9986 are exactly identical! WARNING: Sequences tr_A0A2I3HF04_A0A2I3HF04_NOMLE_61853 and tr_A0A2I3RPX2_A0A2I3RPX2_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HF04_A0A2I3HF04_NOMLE_61853 and sp_O75317_UBP12_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HF04_A0A2I3HF04_NOMLE_61853 and tr_F7EEX6_F7EEX6_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3HF04_A0A2I3HF04_NOMLE_61853 and tr_A0A2R8PJ37_A0A2R8PJ37_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3HF04_A0A2I3HF04_NOMLE_61853 and tr_F1RTK0_F1RTK0_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A2I3HF04_A0A2I3HF04_NOMLE_61853 and sp_A5D9H7_UBP12_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A2I3HF04_A0A2I3HF04_NOMLE_61853 and tr_A0A2I3MWQ1_A0A2I3MWQ1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3HF04_A0A2I3HF04_NOMLE_61853 and tr_A0A2K5MZG5_A0A2K5MZG5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3HF04_A0A2I3HF04_NOMLE_61853 and tr_A0A2K6D8Z9_A0A2K6D8Z9_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3HF04_A0A2I3HF04_NOMLE_61853 and tr_A0A2K5YTL2_A0A2K5YTL2_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3HF04_A0A2I3HF04_NOMLE_61853 and tr_A0A2R8ZDS4_A0A2R8ZDS4_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3HF04_A0A2I3HF04_NOMLE_61853 and tr_A0A2U4BGU6_A0A2U4BGU6_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2I3HF04_A0A2I3HF04_NOMLE_61853 and tr_A0A2Y9NFK3_A0A2Y9NFK3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2I3HF04_A0A2I3HF04_NOMLE_61853 and tr_A0A2Y9SSU4_A0A2Y9SSU4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2I3HF04_A0A2I3HF04_NOMLE_61853 and tr_A0A383YNC9_A0A383YNC9_BALAS_310752 are exactly identical! WARNING: Sequences tr_G1NWT9_G1NWT9_MYOLU_59463 and tr_L5JT79_L5JT79_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1P9F2_G1P9F2_MYOLU_59463 and tr_E2RG22_E2RG22_CANLF_9615 are exactly identical! WARNING: Sequences tr_G1P9F2_G1P9F2_MYOLU_59463 and tr_F7DJ23_F7DJ23_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1P9F2_G1P9F2_MYOLU_59463 and tr_I3MH73_I3MH73_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1P9F2_G1P9F2_MYOLU_59463 and tr_H0XHS6_H0XHS6_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1P9F2_G1P9F2_MYOLU_59463 and tr_G3SZK6_G3SZK6_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1P9F2_G1P9F2_MYOLU_59463 and tr_G3WU90_G3WU90_SARHA_9305 are exactly identical! WARNING: Sequences tr_G1P9F2_G1P9F2_MYOLU_59463 and tr_F6ZYC1_F6ZYC1_XENTR_8364 are exactly identical! WARNING: Sequences tr_G1P9F2_G1P9F2_MYOLU_59463 and tr_G1L521_G1L521_AILME_9646 are exactly identical! WARNING: Sequences tr_G1P9F2_G1P9F2_MYOLU_59463 and tr_A0A337S8T1_A0A337S8T1_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1P9F2_G1P9F2_MYOLU_59463 and tr_A0A1U7QPB3_A0A1U7QPB3_MESAU_10036 are exactly identical! WARNING: Sequences tr_G1P9F2_G1P9F2_MYOLU_59463 and tr_A0A2U3WYL2_A0A2U3WYL2_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1P9F2_G1P9F2_MYOLU_59463 and tr_A0A2Y9KZ12_A0A2Y9KZ12_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G3H3E7_G3H3E7_CRIGR_10029 and tr_A0A3Q0CPT5_A0A3Q0CPT5_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3I544_G3I544_CRIGR_10029 and tr_A0A1U8C7T4_A0A1U8C7T4_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3R6V0_G3R6V0_GORGO_9595 and tr_A0A0D9RZG5_A0A0D9RZG5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2J8Y212_A0A2J8Y212_PONAB_9601 and tr_H9EXL0_H9EXL0_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2J8Y212_A0A2J8Y212_PONAB_9601 and tr_A0A096NT88_A0A096NT88_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2J8Y212_A0A2J8Y212_PONAB_9601 and tr_A0A0D9S483_A0A0D9S483_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2J8Y212_A0A2J8Y212_PONAB_9601 and tr_A0A2K5NX51_A0A2K5NX51_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2J8Y212_A0A2J8Y212_PONAB_9601 and tr_A0A2K6CGC7_A0A2K6CGC7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2J8Y212_A0A2J8Y212_PONAB_9601 and tr_A0A2K6AH76_A0A2K6AH76_MANLE_9568 are exactly identical! WARNING: Sequences tr_H2NES8_H2NES8_PONAB_9601 and tr_A0A2I3T9K4_A0A2I3T9K4_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2NES8_H2NES8_PONAB_9601 and tr_G7PNB9_G7PNB9_MACFA_9541 are exactly identical! WARNING: Sequences tr_H2NES8_H2NES8_PONAB_9601 and tr_A0A096NB42_A0A096NB42_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2NES8_H2NES8_PONAB_9601 and tr_A0A2K5M5R9_A0A2K5M5R9_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2NES8_H2NES8_PONAB_9601 and tr_A0A2K6DI65_A0A2K6DI65_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2NES8_H2NES8_PONAB_9601 and tr_A0A2K5ZKC6_A0A2K5ZKC6_MANLE_9568 are exactly identical! WARNING: Sequences tr_C1GD78_C1GD78_PARBD_502780 and tr_C1H9S9_C1H9S9_PARBA_502779 are exactly identical! WARNING: Sequences tr_B8NBT0_B8NBT0_ASPFN_332952 and tr_Q2TZG8_Q2TZG8_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8NBT0_B8NBT0_ASPFN_332952 and tr_A0A1S9DDY8_A0A1S9DDY8_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_K7ALA5_K7ALA5_PANTR_9598 and tr_A0A2R9A6E3_A0A2R9A6E3_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6Z9K0_F6Z9K0_MONDO_13616 and tr_G3WIV2_G3WIV2_SARHA_9305 are exactly identical! WARNING: Sequences tr_W5PP50_W5PP50_SHEEP_9940 and tr_F1MP08_F1MP08_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PSZ9_W5PSZ9_SHEEP_9940 and tr_A0A0G2QC35_A0A0G2QC35_RAT_10116 are exactly identical! WARNING: Sequences tr_A0A3B5R4B0_A0A3B5R4B0_XIPMA_8083 and tr_I3JCU4_I3JCU4_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B5R4B0_A0A3B5R4B0_XIPMA_8083 and tr_A0A096LSL6_A0A096LSL6_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088ATC6_A0A088ATC6_APIME_7460 and tr_A0A0N0U5G4_A0A0N0U5G4_9HYME_166423 are exactly identical! WARNING: Sequences tr_A0A088ATC6_A0A088ATC6_APIME_7460 and tr_A0A2A3EIX4_A0A2A3EIX4_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158N9U8_A0A158N9U8_ATTCE_12957 and tr_F4X0X6_F4X0X6_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158N9U8_A0A158N9U8_ATTCE_12957 and tr_E2BFG8_E2BFG8_HARSA_610380 are exactly identical! WARNING: Sequences tr_H2T9C0_H2T9C0_TAKRU_31033 and tr_A0A087YCK3_A0A087YCK3_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2TV46_H2TV46_TAKRU_31033 and tr_H3CWM9_H3CWM9_TETNG_99883 are exactly identical! WARNING: Sequences sp_Q8NB14_UBP38_HUMAN_9606 and tr_A0A2R9CGP9_A0A2R9CGP9_PANPA_9597 are exactly identical! WARNING: Sequences tr_J3LYF9_J3LYF9_ORYBR_4533 and tr_A2XU37_A2XU37_ORYSI_39946 are exactly identical! WARNING: Sequences tr_J3LYF9_J3LYF9_ORYBR_4533 and tr_I1PLS5_I1PLS5_ORYGL_4538 are exactly identical! WARNING: Sequences tr_J3LYF9_J3LYF9_ORYBR_4533 and tr_A0A0E0P9Y0_A0A0E0P9Y0_ORYRU_4529 are exactly identical! WARNING: Sequences tr_J3LYF9_J3LYF9_ORYBR_4533 and tr_A0A0D3FWI1_A0A0D3FWI1_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_J3LYF9_J3LYF9_ORYBR_4533 and tr_A0A0D9ZLJ0_A0A0D9ZLJ0_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_J3LYF9_J3LYF9_ORYBR_4533 and tr_A0A0E0KRB1_A0A0E0KRB1_ORYPU_4537 are exactly identical! WARNING: Sequences tr_J3LYF9_J3LYF9_ORYBR_4533 and tr_Q0JCS2_Q0JCS2_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0G281_A0A0E0G281_ORYNI_4536 and tr_A2XDE6_A2XDE6_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0G281_A0A0E0G281_ORYNI_4536 and tr_I1P8E2_I1P8E2_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0G281_A0A0E0G281_ORYNI_4536 and tr_A0A0E0CWH3_A0A0E0CWH3_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0G281_A0A0E0G281_ORYNI_4536 and tr_A0A0E0NQU3_A0A0E0NQU3_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0G281_A0A0E0G281_ORYNI_4536 and tr_A0A0D3FEU5_A0A0D3FEU5_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0G281_A0A0E0G281_ORYNI_4536 and tr_A0A0D9Z391_A0A0D9Z391_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0G281_A0A0E0G281_ORYNI_4536 and tr_A0A0D9VQK1_A0A0D9VQK1_9ORYZ_77586 are exactly identical! WARNING: Sequences tr_A0A0E0G281_A0A0E0G281_ORYNI_4536 and tr_Q8H7M6_Q8H7M6_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A2QZ56_A2QZ56_ASPNC_425011 and tr_A0A319A7R3_A0A319A7R3_9EURO_1450533 are exactly identical! WARNING: Sequences tr_F6Q231_F6Q231_MACMU_9544 and tr_G7P6C3_G7P6C3_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6Q231_F6Q231_MACMU_9544 and tr_A0A096N633_A0A096N633_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6Q231_F6Q231_MACMU_9544 and tr_A0A0D9S156_A0A0D9S156_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6Q231_F6Q231_MACMU_9544 and tr_A0A2K5NC57_A0A2K5NC57_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6Q231_F6Q231_MACMU_9544 and tr_A0A2K6CAL9_A0A2K6CAL9_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6Q231_F6Q231_MACMU_9544 and tr_A0A2K5Z6J4_A0A2K5Z6J4_MANLE_9568 are exactly identical! WARNING: Sequences tr_G7XHJ9_G7XHJ9_ASPKW_1033177 and tr_A0A146FXT0_A0A146FXT0_9EURO_1069201 are exactly identical! WARNING: Sequences tr_G7XHJ9_G7XHJ9_ASPKW_1033177 and tr_A0A1L9MUK6_A0A1L9MUK6_ASPTU_767770 are exactly identical! WARNING: Sequences tr_G5AVF4_G5AVF4_HETGA_10181 and tr_A0A091DYY8_A0A091DYY8_FUKDA_885580 are exactly identical! WARNING: Sequences tr_F4PE09_F4PE09_BATDJ_684364 and tr_A0A177WI39_A0A177WI39_BATDE_403673 are exactly identical! WARNING: Sequences tr_H0YVZ2_H0YVZ2_TAEGU_59729 and tr_A0A218USX8_A0A218USX8_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZMU7_H0ZMU7_TAEGU_59729 and tr_U3K1W9_U3K1W9_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZMU7_H0ZMU7_TAEGU_59729 and tr_A0A091ELZ1_A0A091ELZ1_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZMU7_H0ZMU7_TAEGU_59729 and tr_A0A093QBM9_A0A093QBM9_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZMU7_H0ZMU7_TAEGU_59729 and tr_A0A218V739_A0A218V739_9PASE_299123 are exactly identical! WARNING: Sequences tr_H3AU68_H3AU68_LATCH_7897 and tr_A0A151MSC2_A0A151MSC2_ALLMI_8496 are exactly identical! WARNING: Sequences tr_I1LNK3_I1LNK3_SOYBN_3847 and tr_A0A151U909_A0A151U909_CAJCA_3821 are exactly identical! WARNING: Sequences tr_A0A080WFU5_A0A080WFU5_TRIRC_559305 and tr_F2PLY0_F2PLY0_TRIEC_559882 are exactly identical! WARNING: Sequences tr_A0A080WFU5_A0A080WFU5_TRIRC_559305 and tr_A0A059J845_A0A059J845_9EURO_1215338 are exactly identical! WARNING: Sequences tr_A0A080WFU5_A0A080WFU5_TRIRC_559305 and tr_A0A178EQD8_A0A178EQD8_TRIRU_5551 are exactly identical! WARNING: Sequences tr_B3RXW2_B3RXW2_TRIAD_10228 and tr_A0A369SIM2_A0A369SIM2_9METZ_287889 are exactly identical! WARNING: Sequences tr_M3WW28_M3WW28_FELCA_9685 and tr_A0A2U3WEZ6_A0A2U3WEZ6_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3WW28_M3WW28_FELCA_9685 and tr_A0A2Y9KHB0_A0A2Y9KHB0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M4D2E7_M4D2E7_BRARP_51351 and tr_A0A078JME2_A0A078JME2_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4D2E7_M4D2E7_BRARP_51351 and tr_A0A078JQ01_A0A078JQ01_BRANA_3708 are exactly identical! WARNING: Sequences tr_M7ZA75_M7ZA75_TRIUA_4572 and tr_A0A3B6B228_A0A3B6B228_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M7ZIQ3_M7ZIQ3_TRIUA_4572 and tr_A0A3B6I185_A0A3B6I185_WHEAT_4565 are exactly identical! WARNING: Sequences tr_U3JM78_U3JM78_FICAL_59894 and tr_A0A218UI95_A0A218UI95_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3ID94_U3ID94_ANAPL_8839 and tr_A0A091JSE6_A0A091JSE6_EGRGA_188379 are exactly identical! WARNING: Sequences tr_U3ID94_U3ID94_ANAPL_8839 and tr_A0A091GGN7_A0A091GGN7_9AVES_55661 are exactly identical! WARNING: Sequences tr_U3ID94_U3ID94_ANAPL_8839 and tr_A0A2I0M2P5_A0A2I0M2P5_COLLI_8932 are exactly identical! WARNING: Sequences tr_U3ID94_U3ID94_ANAPL_8839 and tr_A0A1V4KNE6_A0A1V4KNE6_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0A0KXS5_A0A0A0KXS5_CUCSA_3659 and tr_A0A1S3C0V6_A0A1S3C0V6_CUCME_3656 are exactly identical! WARNING: Sequences tr_A0A0D2RQ24_A0A0D2RQ24_GOSRA_29730 and tr_A0A1U8N7L0_A0A1U8N7L0_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2SQC5_A0A0D2SQC5_GOSRA_29730 and tr_A0A1U8KA35_A0A1U8KA35_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2SQC5_A0A0D2SQC5_GOSRA_29730 and tr_A0A1U8NU68_A0A1U8NU68_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2U0K4_A0A0D2U0K4_GOSRA_29730 and tr_A0A1U8J545_A0A1U8J545_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2U0K4_A0A0D2U0K4_GOSRA_29730 and tr_A0A1U8J5W3_A0A1U8J5W3_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0F0I0X8_A0A0F0I0X8_ASPPU_1403190 and tr_A0A2G7FJM6_A0A2G7FJM6_9EURO_656916 are exactly identical! WARNING: Sequences tr_A0A151MTS2_A0A151MTS2_ALLMI_8496 and tr_A0A091KF04_A0A091KF04_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A151MTS2_A0A151MTS2_ALLMI_8496 and tr_A0A3Q0GJ84_A0A3Q0GJ84_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0L9UAX9_A0A0L9UAX9_PHAAN_3914 and tr_A0A1S3TJ07_A0A1S3TJ07_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A091VF44_A0A091VF44_NIPNI_128390 and tr_A0A087QMD8_A0A087QMD8_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A2I0M2V4_A0A2I0M2V4_COLLI_8932 and tr_A0A1V4KPG6_A0A1V4KPG6_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A166QHA8_A0A166QHA8_9PEZI_708197 and tr_A0A167AKS3_A0A167AKS3_9PEZI_1573173 are exactly identical! WARNING: Sequences tr_A0A1S3YIS5_A0A1S3YIS5_TOBAC_4097 and tr_A0A314LBI3_A0A314LBI3_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S3YIS5_A0A1S3YIS5_TOBAC_4097 and tr_A0A1U7XPH6_A0A1U7XPH6_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S2WZU6_A0A1S2WZU6_SALSA_8030 and tr_A0A1S3QAG9_A0A1S3QAG9_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S2WZU6_A0A1S2WZU6_SALSA_8030 and sp_C0HB46_UBP12_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S2WZU6_A0A1S2WZU6_SALSA_8030 and tr_A0A060XZT4_A0A060XZT4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S2WZU6_A0A1S2WZU6_SALSA_8030 and tr_A0A060YIJ5_A0A060YIJ5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3PA13_A0A1S3PA13_SALSA_8030 and tr_A0A060YAS6_A0A060YAS6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3PA13_A0A1S3PA13_SALSA_8030 and tr_A0A2U9C461_A0A2U9C461_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A1S3Q733_A0A1S3Q733_SALSA_8030 and tr_A0A060X5E0_A0A060X5E0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3REY1_A0A1S3REY1_SALSA_8030 and tr_A0A1S3SKS0_A0A1S3SKS0_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3S0X9_A0A1S3S0X9_SALSA_8030 and tr_W5UDA6_W5UDA6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1S3S0X9_A0A1S3S0X9_SALSA_8030 and tr_A0A2U9CQX1_A0A2U9CQX1_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A1S3VUI8_A0A1S3VUI8_VIGRR_3916 and tr_A0A3Q0EJM5_A0A3Q0EJM5_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A1B7MVR3_A0A1B7MVR3_9HOMO_1314800 and tr_A0A1J8PF59_A0A1J8PF59_9HOMO_180088 are exactly identical! WARNING: Sequences tr_A0A2H3C5C2_A0A2H3C5C2_9AGAR_1076256 and tr_A0A284QVJ4_A0A284QVJ4_9AGAR_47428 are exactly identical! WARNING: Sequences tr_A0A1U8F3J0_A0A1U8F3J0_CAPAN_4072 and tr_A0A2G3B2Y7_A0A2G3B2Y7_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2U4AM86_A0A2U4AM86_TURTR_9739 and tr_A0A2Y9QIY0_A0A2Y9QIY0_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4AM86_A0A2U4AM86_TURTR_9739 and tr_A0A2Y9EUH1_A0A2Y9EUH1_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4AS04_A0A2U4AS04_TURTR_9739 and tr_A0A2Y9TDI2_A0A2Y9TDI2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4AZ82_A0A2U4AZ82_TURTR_9739 and tr_A0A2Y9P8N5_A0A2Y9P8N5_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 282 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/3_mltree/Q9P2H5.raxml.reduced.phy Alignment comprises 1 partitions and 249 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 249 / 249 Gaps: 3.38 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/3_mltree/Q9P2H5.raxml.rba Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 249 / 19920 [00:00:00] Data distribution: max. searches per worker: 4 Starting ML tree search with 20 distinct starting trees [00:00:00 -454382.596579] Initial branch length optimization [00:00:05 -354749.583602] Model parameter optimization (eps = 10.000000) [00:01:15 -354303.174590] AUTODETECT spr round 1 (radius: 5) [00:04:34 -222987.620270] AUTODETECT spr round 2 (radius: 10) [00:08:01 -157609.047850] AUTODETECT spr round 3 (radius: 15) [00:11:25 -131671.096475] AUTODETECT spr round 4 (radius: 20) [00:15:15 -115592.885472] AUTODETECT spr round 5 (radius: 25) [00:19:38 -108399.169973] SPR radius for FAST iterations: 25 (autodetect) [00:19:38 -108399.169973] Model parameter optimization (eps = 3.000000) [00:19:59 -108329.082273] FAST spr round 1 (radius: 25) [00:23:18 -92835.367824] FAST spr round 2 (radius: 25) [00:25:59 -82327.288816] FAST spr round 3 (radius: 25) [00:28:20 -79883.717555] FAST spr round 4 (radius: 25) [00:30:32 -79351.811346] FAST spr round 5 (radius: 25) [00:32:36 -79087.600607] FAST spr round 6 (radius: 25) [00:34:35 -79045.802561] FAST spr round 7 (radius: 25) [00:36:21 -79044.856825] FAST spr round 8 (radius: 25) [00:38:04 -79044.855624] Model parameter optimization (eps = 1.000000) [00:38:20 -79035.272768] SLOW spr round 1 (radius: 5) [00:40:29 -79020.305948] SLOW spr round 2 (radius: 5) [00:42:44 -79020.287319] SLOW spr round 3 (radius: 10) [00:45:13 -79019.282540] SLOW spr round 4 (radius: 5) [00:48:05 -79019.280538] SLOW spr round 5 (radius: 10) [00:50:47 -79019.243046] SLOW spr round 6 (radius: 15) [00:54:10 -79019.242726] SLOW spr round 7 (radius: 20) [00:59:38 -79018.952697] SLOW spr round 8 (radius: 5) [01:02:49 -79018.952511] SLOW spr round 9 (radius: 10) [01:05:44 -79018.952368] SLOW spr round 10 (radius: 15) [01:09:02 -79018.952244] SLOW spr round 11 (radius: 20) [01:12:41] [worker #2] ML tree search #3, logLikelihood: -79019.500786 [01:14:32 -79018.952122] SLOW spr round 12 (radius: 25) [01:19:08] [worker #4] ML tree search #5, logLikelihood: -80359.596649 [01:20:43] [worker #3] ML tree search #4, logLikelihood: -79913.120492 [01:21:19 -79018.951999] Model parameter optimization (eps = 0.100000) [01:21:27] [worker #0] ML tree search #1, logLikelihood: -79018.894637 [01:21:28 -455323.316961] Initial branch length optimization [01:21:32 -354547.157934] Model parameter optimization (eps = 10.000000) [01:22:27 -353961.533051] AUTODETECT spr round 1 (radius: 5) [01:25:42 -211696.412627] AUTODETECT spr round 2 (radius: 10) [01:29:02 -148986.398088] AUTODETECT spr round 3 (radius: 15) [01:32:34 -120778.548832] AUTODETECT spr round 4 (radius: 20) [01:36:40 -105349.324317] AUTODETECT spr round 5 (radius: 25) [01:41:21 -95327.265515] SPR radius for FAST iterations: 25 (autodetect) [01:41:21 -95327.265515] Model parameter optimization (eps = 3.000000) [01:41:44 -95247.780143] FAST spr round 1 (radius: 25) [01:45:08 -81029.180491] FAST spr round 2 (radius: 25) [01:47:45 -79159.560360] FAST spr round 3 (radius: 25) [01:49:58 -79062.020882] FAST spr round 4 (radius: 25) [01:51:59 -79047.123307] FAST spr round 5 (radius: 25) [01:53:53 -79046.431200] FAST spr round 6 (radius: 25) [01:55:43 -79045.603484] FAST spr round 7 (radius: 25) [01:57:30 -79044.947635] FAST spr round 8 (radius: 25) [01:59:16 -79044.946152] Model parameter optimization (eps = 1.000000) [01:59:31 -79040.421857] SLOW spr round 1 (radius: 5) [02:01:45 -79026.450823] SLOW spr round 2 (radius: 5) [02:04:04 -79018.985480] SLOW spr round 3 (radius: 5) [02:05:40] [worker #1] ML tree search #2, logLikelihood: -79031.153993 [02:06:24 -79016.819130] SLOW spr round 4 (radius: 5) [02:08:42 -79016.815699] SLOW spr round 5 (radius: 10) [02:11:15 -79014.737748] SLOW spr round 6 (radius: 5) [02:14:08 -79014.737254] SLOW spr round 7 (radius: 10) [02:16:45 -79014.737089] SLOW spr round 8 (radius: 15) [02:16:56] [worker #2] ML tree search #8, logLikelihood: -79407.125972 [02:20:08 -79014.737014] SLOW spr round 9 (radius: 20) [02:23:37] [worker #4] ML tree search #10, logLikelihood: -79026.993938 [02:25:29 -79014.693941] SLOW spr round 10 (radius: 25) [02:32:04 -79014.693929] Model parameter optimization (eps = 0.100000) [02:32:14] [worker #0] ML tree search #6, logLikelihood: -79014.593347 [02:32:14 -451882.841627] Initial branch length optimization [02:32:18 -351407.505861] Model parameter optimization (eps = 10.000000) [02:33:37 -351190.544718] AUTODETECT spr round 1 (radius: 5) [02:36:52 -212217.693166] AUTODETECT spr round 2 (radius: 10) [02:40:10 -162087.079685] AUTODETECT spr round 3 (radius: 15) [02:43:38 -138766.311724] AUTODETECT spr round 4 (radius: 20) [02:47:33 -121255.671737] AUTODETECT spr round 5 (radius: 25) [02:52:24 -103921.208872] SPR radius for FAST iterations: 25 (autodetect) [02:52:24 -103921.208872] Model parameter optimization (eps = 3.000000) [02:52:49 -103825.923663] FAST spr round 1 (radius: 25) [02:53:54] [worker #3] ML tree search #9, logLikelihood: -79141.825086 [02:56:26 -80333.941822] FAST spr round 2 (radius: 25) [02:59:06 -79129.704236] FAST spr round 3 (radius: 25) [03:01:21 -79072.843967] FAST spr round 4 (radius: 25) [03:03:23 -79065.869204] FAST spr round 5 (radius: 25) [03:05:12 -79063.909934] FAST spr round 6 (radius: 25) [03:06:57 -79063.909796] Model parameter optimization (eps = 1.000000) [03:07:13 -79057.078729] SLOW spr round 1 (radius: 5) [03:09:29 -79037.302486] SLOW spr round 2 (radius: 5) [03:09:43] [worker #1] ML tree search #7, logLikelihood: -79009.656921 [03:11:42 -79034.936569] SLOW spr round 3 (radius: 5) [03:13:53 -79034.936222] SLOW spr round 4 (radius: 10) [03:16:22 -79033.327241] SLOW spr round 5 (radius: 5) [03:19:11 -79030.969274] SLOW spr round 6 (radius: 5) [03:21:37] [worker #2] ML tree search #13, logLikelihood: -79033.711200 [03:21:40 -79030.969107] SLOW spr round 7 (radius: 10) [03:24:10 -79030.968951] SLOW spr round 8 (radius: 15) [03:27:32 -79030.968617] SLOW spr round 9 (radius: 20) [03:32:48 -79030.968461] SLOW spr round 10 (radius: 25) [03:39:24 -79030.968234] Model parameter optimization (eps = 0.100000) [03:39:31] [worker #0] ML tree search #11, logLikelihood: -79030.872039 [03:39:31 -453986.051965] Initial branch length optimization [03:39:37 -352206.618103] Model parameter optimization (eps = 10.000000) [03:40:36 -351946.179970] AUTODETECT spr round 1 (radius: 5) [03:43:50 -220299.827448] AUTODETECT spr round 2 (radius: 10) [03:47:13 -153506.858336] AUTODETECT spr round 3 (radius: 15) [03:49:01] [worker #4] ML tree search #15, logLikelihood: -79041.428076 [03:50:39 -117644.449633] AUTODETECT spr round 4 (radius: 20) [03:54:29 -99263.572015] AUTODETECT spr round 5 (radius: 25) [03:58:08 -94708.536885] SPR radius for FAST iterations: 25 (autodetect) [03:58:08 -94708.536885] Model parameter optimization (eps = 3.000000) [03:58:39 -94600.476270] FAST spr round 1 (radius: 25) [04:02:08 -80391.997177] FAST spr round 2 (radius: 25) [04:04:49 -79799.655660] FAST spr round 3 (radius: 25) [04:07:14 -79510.940742] FAST spr round 4 (radius: 25) [04:09:31 -79134.718798] FAST spr round 5 (radius: 25) [04:11:17] [worker #3] ML tree search #14, logLikelihood: -79016.226393 [04:11:22 -79130.368066] FAST spr round 6 (radius: 25) [04:13:12 -79129.613545] FAST spr round 7 (radius: 25) [04:14:05] [worker #1] ML tree search #12, logLikelihood: -79048.505464 [04:15:00 -79129.612687] Model parameter optimization (eps = 1.000000) [04:15:18 -79126.395867] SLOW spr round 1 (radius: 5) [04:17:35 -79116.084577] SLOW spr round 2 (radius: 5) [04:19:55 -79115.477863] SLOW spr round 3 (radius: 5) [04:22:15 -79114.223660] SLOW spr round 4 (radius: 5) [04:24:29 -79114.223446] SLOW spr round 5 (radius: 10) [04:27:01 -79113.840410] SLOW spr round 6 (radius: 5) [04:29:57 -79106.975142] SLOW spr round 7 (radius: 5) [04:32:35 -79105.191202] SLOW spr round 8 (radius: 5) [04:35:04 -79102.687541] SLOW spr round 9 (radius: 5) [04:37:25 -79100.962051] SLOW spr round 10 (radius: 5) [04:39:41 -79100.961473] SLOW spr round 11 (radius: 10) [04:42:06 -79100.961226] SLOW spr round 12 (radius: 15) [04:43:19] [worker #2] ML tree search #18, logLikelihood: -79020.664622 [04:45:33 -79100.961011] SLOW spr round 13 (radius: 20) [04:50:58 -79100.688808] SLOW spr round 14 (radius: 5) [04:54:06 -79100.688600] SLOW spr round 15 (radius: 10) [04:56:59 -79100.688398] SLOW spr round 16 (radius: 15) [04:58:25] [worker #4] ML tree search #20, logLikelihood: -79018.756336 [05:00:17 -79100.688193] SLOW spr round 17 (radius: 20) [05:05:34 -79100.687984] SLOW spr round 18 (radius: 25) [05:12:08 -79100.687772] Model parameter optimization (eps = 0.100000) [05:12:20] [worker #0] ML tree search #16, logLikelihood: -79099.880687 [05:26:37] [worker #1] ML tree search #17, logLikelihood: -79029.437639 [05:33:45] [worker #3] ML tree search #19, logLikelihood: -79037.964433 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.167439,0.388822) (0.274445,0.464823) (0.336149,1.072580) (0.221968,2.012821) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -79009.656921 AIC score: 162029.313842 / AICc score: 8206089.313842 / BIC score: 169081.806900 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=249). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/3_mltree/Q9P2H5.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/3_mltree/Q9P2H5.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/3_mltree/Q9P2H5.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9P2H5/3_mltree/Q9P2H5.raxml.log Analysis started: 01-Jul-2021 14:50:40 / finished: 01-Jul-2021 20:24:26 Elapsed time: 20025.328 seconds Consumed energy: 1831.077 Wh (= 9 km in an electric car, or 46 km with an e-scooter!)