RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 04-Jun-2021 13:39:55 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NWZ3/2_msa/Q9NWZ3_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NWZ3/3_mltree/Q9NWZ3.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NWZ3/4_raxmlng_ancestral/Q9NWZ3 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622803195 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NWZ3/2_msa/Q9NWZ3_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 460 sites WARNING: Sequences sp_Q8GXZ3_PBL8_ARATH_3702 and tr_D7M6D0_D7M6D0_ARALL_81972 are exactly identical! WARNING: Sequences tr_A0A0E0G067_A0A0E0G067_ORYNI_4536 and tr_A2X055_A2X055_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0G067_A0A0E0G067_ORYNI_4536 and tr_A0A0E0CDY3_A0A0E0CDY3_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0G067_A0A0E0G067_ORYNI_4536 and tr_A0A0E0N8W8_A0A0E0N8W8_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0G067_A0A0E0G067_ORYNI_4536 and tr_Q6ZH46_Q6ZH46_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0G431_A0A0E0G431_ORYNI_4536 and tr_A0A0E0NC79_A0A0E0NC79_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0G431_A0A0E0G431_ORYNI_4536 and tr_A0A0D3F2W5_A0A0D3F2W5_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0G431_A0A0E0G431_ORYNI_4536 and tr_A0A0D9YPS3_A0A0D9YPS3_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0GB01_A0A0E0GB01_ORYNI_4536 and tr_A2X859_A2X859_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0GHF5_A0A0E0GHF5_ORYNI_4536 and tr_B8APB2_B8APB2_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0GHF5_A0A0E0GHF5_ORYNI_4536 and tr_A0A0E0NQB6_A0A0E0NQB6_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0GHF5_A0A0E0GHF5_ORYNI_4536 and tr_A0A0D9Z2N8_A0A0D9Z2N8_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0GN21_A0A0E0GN21_ORYNI_4536 and tr_A2Z735_A2Z735_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0GN21_A0A0E0GN21_ORYNI_4536 and tr_I1QUC2_I1QUC2_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0GN21_A0A0E0GN21_ORYNI_4536 and tr_A0A0E0QYV6_A0A0E0QYV6_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0GN21_A0A0E0GN21_ORYNI_4536 and tr_Q7XEV8_Q7XEV8_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0H639_A0A0E0H639_ORYNI_4536 and tr_A0A0E0PE66_A0A0E0PE66_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0H639_A0A0E0H639_ORYNI_4536 and tr_A0A0D9ZQT7_A0A0D9ZQT7_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0H639_A0A0E0H639_ORYNI_4536 and tr_Q7XTU1_Q7XTU1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0HGF5_A0A0E0HGF5_ORYNI_4536 and tr_A2Y664_A2Y664_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0HGF5_A0A0E0HGF5_ORYNI_4536 and tr_I1QDL9_I1QDL9_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0HGF5_A0A0E0HGF5_ORYNI_4536 and tr_A0A0E0PPJ5_A0A0E0PPJ5_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0HGF5_A0A0E0HGF5_ORYNI_4536 and tr_A0A0D3G9F6_A0A0D3G9F6_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0HGF5_A0A0E0HGF5_ORYNI_4536 and tr_A0A0E0A178_A0A0E0A178_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0HGF5_A0A0E0HGF5_ORYNI_4536 and tr_Q6L4U4_Q6L4U4_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0IT42_A0A0E0IT42_ORYNI_4536 and tr_A2XZW7_A2XZW7_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0IT42_A0A0E0IT42_ORYNI_4536 and tr_I1PS33_I1PS33_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0IT42_A0A0E0IT42_ORYNI_4536 and tr_Q75IN0_Q75IN0_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_F7HHC6_F7HHC6_MACMU_9544 and tr_G7PHM6_G7PHM6_MACFA_9541 are exactly identical! WARNING: Sequences tr_I1P301_I1P301_ORYGL_4538 and tr_A0A0E0CPL9_A0A0E0CPL9_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_I1P301_I1P301_ORYGL_4538 and tr_A0A0E0NJ14_A0A0E0NJ14_ORYRU_4529 are exactly identical! WARNING: Sequences tr_I1P301_I1P301_ORYGL_4538 and tr_A0A0D9YW93_A0A0D9YW93_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_I1P808_I1P808_ORYGL_4538 and tr_A0A0D3FED6_A0A0D3FED6_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_I1Q5G5_I1Q5G5_ORYGL_4538 and tr_A0A0E0AEN4_A0A0E0AEN4_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_I1Q5G5_I1Q5G5_ORYGL_4538 and tr_Q5Z7P1_Q5Z7P1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_I1QDT4_I1QDT4_ORYGL_4538 and tr_Q5NAV8_Q5NAV8_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0EXK3_A0A0E0EXK3_9ORYZ_40149 and tr_A0A0E0BA99_A0A0E0BA99_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0MU65_A0A0E0MU65_ORYRU_4529 and tr_A0A0D3ELY6_A0A0D3ELY6_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_I1J5M4_I1J5M4_SOYBN_3847 and tr_I1JBN3_I1JBN3_SOYBN_3847 are exactly identical! WARNING: Sequences tr_M4CXA4_M4CXA4_BRARP_51351 and tr_A0A0D3EFV1_A0A0D3EFV1_BRAOL_109376 are exactly identical! WARNING: Sequences tr_M4DXR2_M4DXR2_BRARP_51351 and tr_A0A078GHK9_A0A078GHK9_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4E3P0_M4E3P0_BRARP_51351 and tr_A0A0D3AIS7_A0A0D3AIS7_BRAOL_109376 are exactly identical! WARNING: Sequences tr_M4ECS0_M4ECS0_BRARP_51351 and tr_A0A078JKV0_A0A078JKV0_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4FIK0_M4FIK0_BRARP_51351 and tr_A0A078IAG8_A0A078IAG8_BRANA_3708 are exactly identical! WARNING: Sequences tr_A0A3B6HRI5_A0A3B6HRI5_WHEAT_4565 and tr_A0A3B6IXJ6_A0A3B6IXJ6_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A3B6HRI5_A0A3B6HRI5_WHEAT_4565 and tr_A0A3B6JN04_A0A3B6JN04_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A3B6PHT3_A0A3B6PHT3_WHEAT_4565 and tr_A0A3B6U6A6_A0A3B6U6A6_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A067FLB9_A0A067FLB9_CITSI_2711 and tr_V4UTG8_V4UTG8_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067FLB9_A0A067FLB9_CITSI_2711 and tr_A0A2H5MXL8_A0A2H5MXL8_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A067FLW1_A0A067FLW1_CITSI_2711 and tr_V4S5N1_V4S5N1_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067GDQ6_A0A067GDQ6_CITSI_2711 and tr_V4UJJ4_V4UJJ4_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067H5M5_A0A067H5M5_CITSI_2711 and tr_V4VH45_V4VH45_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067H5M5_A0A067H5M5_CITSI_2711 and tr_A0A2H5N937_A0A2H5N937_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A078GJG6_A0A078GJG6_BRANA_3708 and tr_A0A078ICV5_A0A078ICV5_BRANA_3708 are exactly identical! WARNING: Sequences tr_A0A078HT07_A0A078HT07_BRANA_3708 and tr_A0A0D3AVK5_A0A0D3AVK5_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078IUS2_A0A078IUS2_BRANA_3708 and tr_A0A0D3DR73_A0A0D3DR73_BRAOL_109376 are exactly identical! WARNING: Sequences tr_V4SNN5_V4SNN5_9ROSI_85681 and tr_A0A2H5NZ35_A0A2H5NZ35_CITUN_55188 are exactly identical! WARNING: Sequences tr_V4SYP9_V4SYP9_9ROSI_85681 and tr_A0A2H5P6J7_A0A2H5P6J7_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A0D2Q6X1_A0A0D2Q6X1_GOSRA_29730 and tr_A0A1U8M1S7_A0A1U8M1S7_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2SKM9_A0A0D2SKM9_GOSRA_29730 and tr_A0A1U8LYZ2_A0A1U8LYZ2_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2UEN7_A0A0D2UEN7_GOSRA_29730 and tr_A0A1U8MYG3_A0A1U8MYG3_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A1S3X0J1_A0A1S3X0J1_TOBAC_4097 and tr_A0A1U7WV27_A0A1U7WV27_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3X1N3_A0A1S3X1N3_TOBAC_4097 and tr_A0A1U7YL41_A0A1U7YL41_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3Y6W6_A0A1S3Y6W6_TOBAC_4097 and tr_A0A1U7VVM3_A0A1U7VVM3_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3YHU3_A0A1S3YHU3_TOBAC_4097 and tr_A0A1U7XPM6_A0A1U7XPM6_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3YQZ8_A0A1S3YQZ8_TOBAC_4097 and tr_A0A1S3ZL92_A0A1S3ZL92_TOBAC_4097 are exactly identical! WARNING: Sequences tr_A0A1S3YQZ8_A0A1S3YQZ8_TOBAC_4097 and tr_A0A1U7WE19_A0A1U7WE19_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3ZPD4_A0A1S3ZPD4_TOBAC_4097 and tr_A0A1U7Y3S8_A0A1U7Y3S8_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4A5S5_A0A1S4A5S5_TOBAC_4097 and tr_A0A1U7V3K8_A0A1U7V3K8_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4AFD2_A0A1S4AFD2_TOBAC_4097 and tr_A0A1U7VHQ0_A0A1U7VHQ0_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4AIR9_A0A1S4AIR9_TOBAC_4097 and tr_A0A1U7VRJ2_A0A1U7VRJ2_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4BFG3_A0A1S4BFG3_TOBAC_4097 and tr_A0A1S4CAN5_A0A1S4CAN5_TOBAC_4097 are exactly identical! WARNING: Sequences tr_A0A1S4BFG3_A0A1S4BFG3_TOBAC_4097 and tr_A0A1J6ISP5_A0A1J6ISP5_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S4BFG3_A0A1S4BFG3_TOBAC_4097 and tr_A0A1U7YS80_A0A1U7YS80_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4BUJ9_A0A1S4BUJ9_TOBAC_4097 and tr_A0A1J6IH41_A0A1J6IH41_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S4CL63_A0A1S4CL63_TOBAC_4097 and tr_A0A314L3I5_A0A314L3I5_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S4DKU4_A0A1S4DKU4_TOBAC_4097 and tr_A0A1U7VSB1_A0A1U7VSB1_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3H7I9_A0A1S3H7I9_LINUN_7574 and tr_A0A1S3HAE2_A0A1S3HAE2_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3TCG8_A0A1S3TCG8_VIGRR_3916 and tr_A0A3Q0ETK8_A0A3Q0ETK8_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A1U8EGH5_A0A1U8EGH5_CAPAN_4072 and tr_A0A2G3BK70_A0A2G3BK70_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A1U8H1Z5_A0A1U8H1Z5_CAPAN_4072 and tr_A0A2G3CC65_A0A2G3CC65_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2G2YQ64_A0A2G2YQ64_CAPAN_4072 and tr_A0A2G3BJ45_A0A2G3BJ45_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2U1LHT1_A0A2U1LHT1_ARTAN_35608 and tr_A0A2U1LRU8_A0A2U1LRU8_ARTAN_35608 are exactly identical! WARNING: Sequences tr_A0A2U1M3D1_A0A2U1M3D1_ARTAN_35608 and tr_A0A2U1PWI3_A0A2U1PWI3_ARTAN_35608 are exactly identical! WARNING: Duplicate sequences found: 84 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NWZ3/4_raxmlng_ancestral/Q9NWZ3.raxml.reduced.phy Alignment comprises 1 partitions and 460 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 460 Gaps: 27.93 % Invariant sites: 1.52 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NWZ3/4_raxmlng_ancestral/Q9NWZ3.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NWZ3/3_mltree/Q9NWZ3.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 115 / 9200 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -160939.548829 [00:00:00 -160939.548829] Initial branch length optimization [00:00:01 -160090.550234] Model parameter optimization (eps = 0.100000) [00:00:33] Tree #1, final logLikelihood: -159646.588084 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.150460,0.213440) (0.180458,0.291350) (0.299435,0.864625) (0.369648,1.775775) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NWZ3/4_raxmlng_ancestral/Q9NWZ3.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NWZ3/4_raxmlng_ancestral/Q9NWZ3.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NWZ3/4_raxmlng_ancestral/Q9NWZ3.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NWZ3/4_raxmlng_ancestral/Q9NWZ3.raxml.log Analysis started: 04-Jun-2021 13:39:55 / finished: 04-Jun-2021 13:40:33 Elapsed time: 37.584 seconds