RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 12-Jul-2021 17:42:34 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVW2/2_msa/Q9NVW2_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVW2/3_mltree/Q9NVW2.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVW2/4_raxmlng_ancestral/Q9NVW2 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626100954 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVW2/2_msa/Q9NVW2_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 624 sites WARNING: Sequences tr_M3XTY6_M3XTY6_MUSPF_9669 and tr_A0A2U3XPC1_A0A2U3XPC1_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XTY6_M3XTY6_MUSPF_9669 and tr_A0A2Y9JN45_A0A2Y9JN45_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XTY6_M3XTY6_MUSPF_9669 and tr_A0A384DEL1_A0A384DEL1_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1QSD2_G1QSD2_NOMLE_61853 and tr_G3QW07_G3QW07_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QSD2_G1QSD2_NOMLE_61853 and tr_H2PBQ8_H2PBQ8_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QSD2_G1QSD2_NOMLE_61853 and sp_Q5RCV8_RNF13_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QSD2_G1QSD2_NOMLE_61853 and tr_H2QNK4_H2QNK4_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QSD2_G1QSD2_NOMLE_61853 and sp_O43567_RNF13_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QSD2_G1QSD2_NOMLE_61853 and tr_H9ELX5_H9ELX5_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QSD2_G1QSD2_NOMLE_61853 and tr_G7NZM7_G7NZM7_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QSD2_G1QSD2_NOMLE_61853 and tr_A0A096MS08_A0A096MS08_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QSD2_G1QSD2_NOMLE_61853 and tr_A0A0D9RGK1_A0A0D9RGK1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QSD2_G1QSD2_NOMLE_61853 and tr_A0A2K6A6Z9_A0A2K6A6Z9_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QSD2_G1QSD2_NOMLE_61853 and tr_A0A2R9BEY4_A0A2R9BEY4_PANPA_9597 are exactly identical! WARNING: Sequences tr_D8RRU9_D8RRU9_SELML_88036 and tr_D8SJQ6_D8SJQ6_SELML_88036 are exactly identical! WARNING: Sequences tr_A0A2I2YT34_A0A2I2YT34_GORGO_9595 and tr_A0A2I3RCP0_A0A2I3RCP0_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2YT34_A0A2I2YT34_GORGO_9595 and tr_F6TTR7_F6TTR7_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I2YT34_A0A2I2YT34_GORGO_9595 and tr_A0A2I3NCK8_A0A2I3NCK8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I2YT34_A0A2I2YT34_GORGO_9595 and tr_A0A2K5MM52_A0A2K5MM52_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I2YT34_A0A2I2YT34_GORGO_9595 and tr_A0A2K6AW22_A0A2K6AW22_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I2YT34_A0A2I2YT34_GORGO_9595 and tr_A0A2K6A5M3_A0A2K6A5M3_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QDA6_G3QDA6_GORGO_9595 and tr_H2QBZ2_H2QBZ2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QDA6_G3QDA6_GORGO_9595 and sp_Q9H6Y7_RN167_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QDA6_G3QDA6_GORGO_9595 and tr_F7EU71_F7EU71_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3QDA6_G3QDA6_GORGO_9595 and tr_G7PT98_G7PT98_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3QDA6_G3QDA6_GORGO_9595 and tr_A0A0D9RKH7_A0A0D9RKH7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3QDA6_G3QDA6_GORGO_9595 and tr_A0A2K5LHF8_A0A2K5LHF8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QDA6_G3QDA6_GORGO_9595 and tr_A0A2K5ZPG2_A0A2K5ZPG2_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QDA6_G3QDA6_GORGO_9595 and tr_A0A2R9BN69_A0A2R9BN69_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QF09_G3QF09_GORGO_9595 and sp_Q9NVW2_RNF12_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2J8T0C7_A0A2J8T0C7_PONAB_9601 and tr_F1PLL1_F1PLL1_CANLF_9615 are exactly identical! WARNING: Sequences tr_A0A2J8T0C7_A0A2J8T0C7_PONAB_9601 and tr_G5BZI4_G5BZI4_HETGA_10181 are exactly identical! WARNING: Sequences tr_A0A2J8T0C7_A0A2J8T0C7_PONAB_9601 and tr_Q3SZS9_Q3SZS9_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A2J8T0C7_A0A2J8T0C7_PONAB_9601 and tr_A0A0D9REA2_A0A0D9REA2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2J8T0C7_A0A2J8T0C7_PONAB_9601 and tr_A0A2Y9FR51_A0A2Y9FR51_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2J8T0C7_A0A2J8T0C7_PONAB_9601 and tr_A0A384DGA1_A0A384DGA1_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1NER0_G1NER0_MELGA_9103 and tr_A0A226P162_A0A226P162_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1P629_F1P629_CANLF_9615 and tr_A0A2Y9IN47_A0A2Y9IN47_ENHLU_391180 are exactly identical! WARNING: Sequences tr_H2Q7B4_H2Q7B4_PANTR_9598 and sp_Q9Y252_RNF6_HUMAN_9606 are exactly identical! WARNING: Sequences tr_W5P3L5_W5P3L5_SHEEP_9940 and sp_Q0VD51_RNF13_BOVIN_9913 are exactly identical! WARNING: Sequences tr_I3M5F5_I3M5F5_ICTTR_43179 and tr_G3T5J1_G3T5J1_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q9H0F5_RNF38_HUMAN_9606 and tr_F6U3Y8_F6U3Y8_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q9H0F5_RNF38_HUMAN_9606 and tr_G1LU07_G1LU07_AILME_9646 are exactly identical! WARNING: Sequences sp_Q9H0F5_RNF38_HUMAN_9606 and tr_G7PRX5_G7PRX5_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q9H0F5_RNF38_HUMAN_9606 and tr_A0A2R9BFL4_A0A2R9BFL4_PANPA_9597 are exactly identical! WARNING: Sequences tr_J3LDV1_J3LDV1_ORYBR_4533 and tr_A0A0E0G883_A0A0E0G883_ORYNI_4536 are exactly identical! WARNING: Sequences tr_J3LDV1_J3LDV1_ORYBR_4533 and tr_I1P1B2_I1P1B2_ORYGL_4538 are exactly identical! WARNING: Sequences tr_J3LDV1_J3LDV1_ORYBR_4533 and tr_A0A0E0NGE5_A0A0E0NGE5_ORYRU_4529 are exactly identical! WARNING: Sequences tr_J3LDV1_J3LDV1_ORYBR_4533 and tr_A0A0D3F6F0_A0A0D3F6F0_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_J3LDV1_J3LDV1_ORYBR_4533 and tr_A0A0D9YTN9_A0A0D9YTN9_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_J3LDV1_J3LDV1_ORYBR_4533 and tr_A0A0E0K155_A0A0E0K155_ORYPU_4537 are exactly identical! WARNING: Sequences tr_J3LDV1_J3LDV1_ORYBR_4533 and tr_Q0E0D6_Q0E0D6_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0ICL7_A0A0E0ICL7_ORYNI_4536 and tr_A2YVP9_A2YVP9_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0ICL7_A0A0E0ICL7_ORYNI_4536 and tr_I1QJ34_I1QJ34_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0ICL7_A0A0E0ICL7_ORYNI_4536 and tr_A0A0E0QJN3_A0A0E0QJN3_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0ICL7_A0A0E0ICL7_ORYNI_4536 and tr_A0A0E0AW05_A0A0E0AW05_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_F6XZY0_F6XZY0_MACMU_9544 and tr_G7PVW0_G7PVW0_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7H8F3_F7H8F3_MACMU_9544 and tr_A0A2K6AUK3_A0A2K6AUK3_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7H8F3_F7H8F3_MACMU_9544 and tr_A0A2K5ZMT5_A0A2K5ZMT5_MANLE_9568 are exactly identical! WARNING: Sequences tr_F4WV10_F4WV10_ACREC_103372 and tr_A0A151J1N6_A0A151J1N6_9HYME_471704 are exactly identical! WARNING: Sequences tr_B3RIX0_B3RIX0_TRIAD_10228 and tr_A0A369RVA2_A0A369RVA2_9METZ_287889 are exactly identical! WARNING: Sequences tr_B3S369_B3S369_TRIAD_10228 and tr_A0A369S2C0_A0A369S2C0_9METZ_287889 are exactly identical! WARNING: Sequences tr_W2QH31_W2QH31_PHYPN_761204 and tr_W2LK28_W2LK28_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A015KBJ0_A0A015KBJ0_9GLOM_1432141 and tr_A0A2H5T5L4_A0A2H5T5L4_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A067GS25_A0A067GS25_CITSI_2711 and tr_V4TPD6_V4TPD6_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067GS25_A0A067GS25_CITSI_2711 and tr_A0A2H5N8L0_A0A2H5N8L0_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A096MP75_A0A096MP75_PAPAN_9555 and tr_A0A2K6E9B4_A0A2K6E9B4_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A078HEN4_A0A078HEN4_BRANA_3708 and tr_A0A0D3C041_A0A0D3C041_BRAOL_109376 are exactly identical! WARNING: Sequences tr_V4UBU3_V4UBU3_9ROSI_85681 and tr_A0A2H5P2W0_A0A2H5P2W0_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A151NNM3_A0A151NNM3_ALLMI_8496 and tr_A0A1U7SLP7_A0A1U7SLP7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0Q3PWS1_A0A0Q3PWS1_AMAAE_12930 and tr_A0A091W2B7_A0A091W2B7_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1S3ZU62_A0A1S3ZU62_TOBAC_4097 and tr_A0A1U7WQS1_A0A1U7WQS1_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4AAI4_A0A1S4AAI4_TOBAC_4097 and tr_A0A1U7XGI4_A0A1U7XGI4_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4AH20_A0A1S4AH20_TOBAC_4097 and tr_A0A1U7VHE5_A0A1U7VHE5_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4AK22_A0A1S4AK22_TOBAC_4097 and tr_A0A1U7UZS7_A0A1U7UZS7_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1U8P6L4_A0A1U8P6L4_GOSHI_3635 and tr_A0A1U8PF92_A0A1U8PF92_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A2K5MHB0_A0A2K5MHB0_CERAT_9531 and tr_A0A2K5ZLS0_A0A2K5ZLS0_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4B3D3_A0A2U4B3D3_TURTR_9739 and tr_A0A2Y9NRF4_A0A2Y9NRF4_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4B3D3_A0A2U4B3D3_TURTR_9739 and tr_A0A2Y9FKJ6_A0A2Y9FKJ6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4B9L0_A0A2U4B9L0_TURTR_9739 and tr_A0A2Y9NTW9_A0A2Y9NTW9_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4B9L0_A0A2U4B9L0_TURTR_9739 and tr_A0A384ALH4_A0A384ALH4_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4CGE8_A0A2U4CGE8_TURTR_9739 and tr_A0A2Y9QLD9_A0A2Y9QLD9_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2Y9DCZ4_A0A2Y9DCZ4_TRIMA_127582 and tr_A0A2Y9JFH7_A0A2Y9JFH7_ENHLU_391180 are exactly identical! WARNING: Duplicate sequences found: 83 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVW2/4_raxmlng_ancestral/Q9NVW2.raxml.reduced.phy Alignment comprises 1 partitions and 624 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 624 Gaps: 55.32 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVW2/4_raxmlng_ancestral/Q9NVW2.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVW2/3_mltree/Q9NVW2.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 156 / 12480 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -177469.672449 [00:00:00 -177469.672449] Initial branch length optimization [00:00:01 -168689.215599] Model parameter optimization (eps = 0.100000) [00:00:51] Tree #1, final logLikelihood: -168287.428418 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.052955,0.201903) (0.034586,0.341793) (0.382904,0.677298) (0.529555,1.356134) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVW2/4_raxmlng_ancestral/Q9NVW2.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVW2/4_raxmlng_ancestral/Q9NVW2.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVW2/4_raxmlng_ancestral/Q9NVW2.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVW2/4_raxmlng_ancestral/Q9NVW2.raxml.log Analysis started: 12-Jul-2021 17:42:34 / finished: 12-Jul-2021 17:43:32 Elapsed time: 57.127 seconds Consumed energy: 4.241 Wh