RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 05-Jul-2021 13:35:03 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVI7/2_msa/Q9NVI7_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVI7/3_mltree/Q9NVI7 --seed 2 --threads 4 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVI7/2_msa/Q9NVI7_trimmed_msa.fasta [00:00:00] Loaded alignment with 999 taxa and 195 sites WARNING: Sequences tr_B4QX60_B4QX60_DROSI_7240 and sp_Q9VEX6_ATD3A_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QX60_B4QX60_DROSI_7240 and tr_B4IBY6_B4IBY6_DROSE_7238 are exactly identical! WARNING: Sequences tr_F1QRF8_F1QRF8_DANRE_7955 and tr_H3FK71_H3FK71_PRIPA_54126 are exactly identical! WARNING: Sequences tr_A0A1D5NZS8_A0A1D5NZS8_CHICK_9031 and tr_G1MUW4_G1MUW4_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5NZS8_A0A1D5NZS8_CHICK_9031 and tr_A0A226N075_A0A226N075_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5NZS8_A0A1D5NZS8_CHICK_9031 and tr_A0A226PF48_A0A226PF48_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0C6K0_A0C6K0_PARTE_5888 and tr_A0CMV3_A0CMV3_PARTE_5888 are exactly identical! WARNING: Sequences tr_J3KJY5_J3KJY5_COCIM_246410 and tr_A0A0J6Y263_A0A0J6Y263_COCIT_404692 are exactly identical! WARNING: Sequences tr_B2VWG0_B2VWG0_PYRTR_426418 and tr_A0A2W1DBU6_A0A2W1DBU6_9PLEO_45151 are exactly identical! WARNING: Sequences tr_D8R5V9_D8R5V9_SELML_88036 and tr_D8SG33_D8SG33_SELML_88036 are exactly identical! WARNING: Sequences tr_D8SAZ9_D8SAZ9_SELML_88036 and tr_D8SML6_D8SML6_SELML_88036 are exactly identical! WARNING: Sequences tr_G1N7I8_G1N7I8_MELGA_9103 and tr_A0A226NCW6_A0A226NCW6_CALSU_9009 are exactly identical! WARNING: Sequences tr_G1N7I8_G1N7I8_MELGA_9103 and tr_A0A226PFC0_A0A226PFC0_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A125YZG4_A0A125YZG4_TOXGV_432359 and tr_A0A074SNK4_A0A074SNK4_HAMHA_99158 are exactly identical! WARNING: Sequences sp_P32795_YME1_YEAST_559292 and tr_J6EQ13_J6EQ13_SACK1_226230 are exactly identical! WARNING: Sequences tr_F9FD64_F9FD64_FUSOF_660025 and tr_N4UG46_N4UG46_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9FD64_F9FD64_FUSOF_660025 and tr_X0C562_X0C562_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9FD64_F9FD64_FUSOF_660025 and tr_A0A2H3TXE9_A0A2H3TXE9_FUSOX_5507 are exactly identical! WARNING: Sequences tr_E9EZ63_E9EZ63_METRA_655844 and tr_A0A0D9PAU6_A0A0D9PAU6_METAN_1291518 are exactly identical! WARNING: Sequences tr_G4YLV5_G4YLV5_PHYSP_1094619 and tr_A0A329SZR5_A0A329SZR5_9STRA_29920 are exactly identical! WARNING: Sequences tr_A0A088ARS3_A0A088ARS3_APIME_7460 and tr_A0A2A3E485_A0A2A3E485_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NS55_A0A158NS55_ATTCE_12957 and tr_A0A195BBB6_A0A195BBB6_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A180H2M1_A0A180H2M1_PUCT1_630390 and tr_E3K5R1_E3K5R1_PUCGT_418459 are exactly identical! WARNING: Sequences tr_A0A180H2M1_A0A180H2M1_PUCT1_630390 and tr_A0A2N5UNR0_A0A2N5UNR0_9BASI_200324 are exactly identical! WARNING: Sequences tr_A0A0E0GBN4_A0A0E0GBN4_ORYNI_4536 and tr_A2X8L0_A2X8L0_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0GBN4_A0A0E0GBN4_ORYNI_4536 and tr_A0A0E0NJM3_A0A0E0NJM3_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0GBN4_A0A0E0GBN4_ORYNI_4536 and tr_A0A0D3F9A1_A0A0D3F9A1_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0GBN4_A0A0E0GBN4_ORYNI_4536 and tr_A0A0D9YWV1_A0A0D9YWV1_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0HFJ2_A0A0E0HFJ2_ORYNI_4536 and tr_B8AYZ7_B8AYZ7_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0HFJ2_A0A0E0HFJ2_ORYNI_4536 and tr_A0A0E0DSG4_A0A0E0DSG4_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0HFJ2_A0A0E0HFJ2_ORYNI_4536 and tr_A0A0E0PNI5_A0A0E0PNI5_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0HFJ2_A0A0E0HFJ2_ORYNI_4536 and tr_A0A0D3G8K4_A0A0D3G8K4_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0HFJ2_A0A0E0HFJ2_ORYNI_4536 and tr_A0A0E0A095_A0A0E0A095_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0HFJ2_A0A0E0HFJ2_ORYNI_4536 and sp_Q0DHL4_FTSH8_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_D0NJ32_D0NJ32_PHYIT_403677 and tr_A0A329RZQ7_A0A329RZQ7_9STRA_29920 are exactly identical! WARNING: Sequences tr_A0A1P6C0U4_A0A1P6C0U4_BRUMA_6279 and tr_A0A0N4SWT5_A0A0N4SWT5_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A1CYX0_A1CYX0_NEOFI_331117 and tr_A0A397I1L9_A0A397I1L9_9EURO_41047 are exactly identical! WARNING: Sequences tr_F7G5J0_F7G5J0_MACMU_9544 and tr_A0A2K6CFN9_A0A2K6CFN9_MACNE_9545 are exactly identical! WARNING: Sequences tr_B8AH99_B8AH99_ORYSI_39946 and tr_A0A0E0NJV3_A0A0E0NJV3_ORYRU_4529 are exactly identical! WARNING: Sequences tr_B8AH99_B8AH99_ORYSI_39946 and tr_A0A0D3F9H1_A0A0D3F9H1_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_B8AH99_B8AH99_ORYSI_39946 and tr_A0A0D9YX47_A0A0D9YX47_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_B8AH99_B8AH99_ORYSI_39946 and tr_Q6YV37_Q6YV37_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_H0ZBZ8_H0ZBZ8_TAEGU_59729 and tr_A0A091F443_A0A091F443_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZBZ8_H0ZBZ8_TAEGU_59729 and tr_A0A218USW4_A0A218USW4_9PASE_299123 are exactly identical! WARNING: Sequences tr_A8XPV8_A8XPV8_CAEBR_6238 and tr_A0A2G5UCM7_A0A2G5UCM7_9PELO_1611254 are exactly identical! WARNING: Sequences tr_A8XU00_A8XU00_CAEBR_6238 and tr_A0A2G5UVG8_A0A2G5UVG8_9PELO_1611254 are exactly identical! WARNING: Sequences tr_G1L2P6_G1L2P6_AILME_9646 and tr_A0A2U3X5Y4_A0A2U3X5Y4_ODORO_9708 are exactly identical! WARNING: Sequences tr_B3RZM6_B3RZM6_TRIAD_10228 and tr_A0A369RZ81_A0A369RZ81_9METZ_287889 are exactly identical! WARNING: Sequences tr_L8FSF0_L8FSF0_PSED2_658429 and tr_A0A094DUD6_A0A094DUD6_9PEZI_1420912 are exactly identical! WARNING: Sequences tr_L8FSF0_L8FSF0_PSED2_658429 and tr_A0A1B8GLL3_A0A1B8GLL3_9PEZI_342668 are exactly identical! WARNING: Sequences tr_L8FSF0_L8FSF0_PSED2_658429 and tr_A0A1B8ERS8_A0A1B8ERS8_9PEZI_1622149 are exactly identical! WARNING: Sequences tr_L2FER2_L2FER2_COLFN_1213859 and tr_T0LWY9_T0LWY9_COLGC_1237896 are exactly identical! WARNING: Sequences tr_A0A287EAM8_A0A287EAM8_HORVV_112509 and tr_A0A287UIE0_A0A287UIE0_HORVV_112509 are exactly identical! WARNING: Sequences tr_A0A287G6S2_A0A287G6S2_HORVV_112509 and tr_M7YTZ9_M7YTZ9_TRIUA_4572 are exactly identical! WARNING: Sequences tr_A0A287G6S2_A0A287G6S2_HORVV_112509 and tr_A0A3B5Y2G8_A0A3B5Y2G8_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A287G6S2_A0A287G6S2_HORVV_112509 and tr_A0A3B5YZX2_A0A3B5YZX2_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A287G6S2_A0A287G6S2_HORVV_112509 and tr_A0A3B5ZYH9_A0A3B5ZYH9_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M4D5D5_M4D5D5_BRARP_51351 and tr_A0A078JGN1_A0A078JGN1_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4D5D5_M4D5D5_BRARP_51351 and tr_A0A0D3A1I0_A0A0D3A1I0_BRAOL_109376 are exactly identical! WARNING: Sequences tr_M8AQH9_M8AQH9_TRIUA_4572 and tr_A0A3B6NSE6_A0A3B6NSE6_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M8AQH9_M8AQH9_TRIUA_4572 and tr_A0A3B6QGK3_A0A3B6QGK3_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M8B109_M8B109_TRIUA_4572 and tr_A0A3B6NR47_A0A3B6NR47_WHEAT_4565 are exactly identical! WARNING: Sequences tr_U3IJ67_U3IJ67_ANAPL_8839 and tr_A0A0Q3QRV3_A0A0Q3QRV3_AMAAE_12930 are exactly identical! WARNING: Sequences tr_U3IJ67_U3IJ67_ANAPL_8839 and tr_A0A091FUC5_A0A091FUC5_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3IJ67_U3IJ67_ANAPL_8839 and tr_A0A087QS93_A0A087QS93_APTFO_9233 are exactly identical! WARNING: Sequences tr_M2U4K4_M2U4K4_COCH5_701091 and tr_W6YC40_W6YC40_COCCA_930089 are exactly identical! WARNING: Sequences tr_V2WWA0_V2WWA0_MONRO_1381753 and tr_A0A0W0F6L3_A0A0W0F6L3_9AGAR_221103 are exactly identical! WARNING: Sequences tr_V2XVN0_V2XVN0_MONRO_1381753 and tr_A0A0W0G444_A0A0W0G444_9AGAR_221103 are exactly identical! WARNING: Sequences tr_W2QYD3_W2QYD3_PHYPN_761204 and tr_A0A0W8DJ00_A0A0W8DJ00_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2QYD3_W2QYD3_PHYPN_761204 and tr_W2MJP0_W2MJP0_PHYPR_4792 are exactly identical! WARNING: Sequences tr_W2R2W4_W2R2W4_PHYPN_761204 and tr_A0A0W8CKH0_A0A0W8CKH0_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2R2W4_W2R2W4_PHYPN_761204 and tr_W2KNC4_W2KNC4_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A015K4U0_A0A015K4U0_9GLOM_1432141 and tr_A0A2I1H720_A0A2I1H720_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015K4U0_A0A015K4U0_9GLOM_1432141 and tr_A0A2H5SAQ0_A0A2H5SAQ0_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A044QNY6_A0A044QNY6_ONCVO_6282 and tr_A0A182EIM9_A0A182EIM9_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A044US75_A0A044US75_ONCVO_6282 and tr_A0A182EGB5_A0A182EGB5_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A067E8N9_A0A067E8N9_CITSI_2711 and tr_A0A2H5QC46_A0A2H5QC46_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A067GW85_A0A067GW85_CITSI_2711 and tr_A0A2H5NRI6_A0A2H5NRI6_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A096NZZ6_A0A096NZZ6_PAPAN_9555 and tr_A0A2K5YDA3_A0A2K5YDA3_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A078HDP0_A0A078HDP0_BRANA_3708 and tr_A0A0D3BEG7_A0A0D3BEG7_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078HXD3_A0A078HXD3_BRANA_3708 and tr_A0A0D3CN49_A0A0D3CN49_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078IQ34_A0A078IQ34_BRANA_3708 and tr_A0A0D3E3B0_A0A0D3E3B0_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A067CEY7_A0A067CEY7_SAPPC_695850 and tr_T0QVA8_T0QVA8_9STRA_1156394 are exactly identical! WARNING: Sequences tr_A0A067CEY7_A0A067CEY7_SAPPC_695850 and tr_A0A1V9ZMH6_A0A1V9ZMH6_9STRA_1202772 are exactly identical! WARNING: Sequences tr_A0A0B2USM9_A0A0B2USM9_TOXCA_6265 and tr_A0A0B2VP65_A0A0B2VP65_TOXCA_6265 are exactly identical! WARNING: Sequences tr_A0A0D2SND6_A0A0D2SND6_GOSRA_29730 and tr_A0A1U8IXH6_A0A1U8IXH6_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0K0FBM0_A0A0K0FBM0_STRVS_75913 and tr_A0A0N5BH26_A0A0N5BH26_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A151N4F6_A0A151N4F6_ALLMI_8496 and tr_A0A1U7RR60_A0A1U7RR60_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0S7DV19_A0A0S7DV19_9EURO_293939 and tr_A0A2I1CKN6_A0A2I1CKN6_9EURO_1392255 are exactly identical! WARNING: Sequences tr_A0A0W8BXB9_A0A0W8BXB9_PHYNI_4790 and tr_W2JYW5_W2JYW5_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A091URR1_A0A091URR1_NIPNI_128390 and tr_A0A1V4K1F9_A0A1V4K1F9_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0WST2_A0A0V0WST2_9BILA_92179 and tr_A0A0V0VJ55_A0A0V0VJ55_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0WST2_A0A0V0WST2_9BILA_92179 and tr_A0A0V1L936_A0A0V1L936_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0WST2_A0A0V0WST2_9BILA_92179 and tr_A0A0V0ZRN8_A0A0V0ZRN8_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0WST2_A0A0V0WST2_9BILA_92179 and tr_A0A0V0U8Y5_A0A0V0U8Y5_9BILA_144512 are exactly identical! WARNING: Sequences tr_I1RKB3_I1RKB3_GIBZE_229533 and tr_A0A2T4GV25_A0A2T4GV25_FUSCU_5516 are exactly identical! WARNING: Sequences tr_A0A166RTT9_A0A166RTT9_9PEZI_708197 and tr_A0A162Q6E6_A0A162Q6E6_9PEZI_1573173 are exactly identical! WARNING: Sequences tr_A0A164R878_A0A164R878_9HOMO_1314777 and tr_A0A166HJ98_A0A166HJ98_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A164T1W5_A0A164T1W5_9HOMO_1314777 and tr_A0A166DSD6_A0A166DSD6_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A165AIF1_A0A165AIF1_9HOMO_1314777 and tr_A0A166ITY2_A0A166ITY2_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A165EAL1_A0A165EAL1_EXIGL_1314781 and tr_A0A165FLV1_A0A165FLV1_EXIGL_1314781 are exactly identical! WARNING: Sequences tr_A0A195DCU4_A0A195DCU4_9HYME_471704 and tr_A0A195FVK7_A0A195FVK7_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A1S3XKW7_A0A1S3XKW7_TOBAC_4097 and tr_A0A1U7VIR7_A0A1U7VIR7_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3YMY0_A0A1S3YMY0_TOBAC_4097 and tr_A0A1U7VLB2_A0A1U7VLB2_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4A4N3_A0A1S4A4N3_TOBAC_4097 and tr_A0A314KHV3_A0A314KHV3_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S4C6K4_A0A1S4C6K4_TOBAC_4097 and tr_A0A1U7X0T9_A0A1U7X0T9_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4CF47_A0A1S4CF47_TOBAC_4097 and tr_A0A1U7VJ15_A0A1U7VJ15_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3LBQ3_A0A1S3LBQ3_SALSA_8030 and tr_A0A060WP14_A0A060WP14_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1V8UQL3_A0A1V8UQL3_9PEZI_1974281 and tr_A0A1V8UZM3_A0A1V8UZM3_9PEZI_1974281 are exactly identical! WARNING: Sequences tr_A0A1V8UQL3_A0A1V8UQL3_9PEZI_1974281 and tr_A0A1V8TAK5_A0A1V8TAK5_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A1V8UQL3_A0A1V8UQL3_9PEZI_1974281 and tr_A0A1V8TNP2_A0A1V8TNP2_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A2H3DSN3_A0A2H3DSN3_ARMGA_47427 and tr_A0A2H3C439_A0A2H3C439_9AGAR_1076256 are exactly identical! WARNING: Sequences tr_A0A2H3DSN3_A0A2H3DSN3_ARMGA_47427 and tr_A0A284R8K1_A0A284R8K1_9AGAR_47428 are exactly identical! WARNING: Sequences tr_A0A2G3A470_A0A2G3A470_CAPAN_4072 and tr_A0A2G3D1X9_A0A2G3D1X9_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2U1KKB2_A0A2U1KKB2_ARTAN_35608 and tr_A0A2U1M8L3_A0A2U1M8L3_ARTAN_35608 are exactly identical! WARNING: Sequences tr_A0A319BYW8_A0A319BYW8_9EURO_1448315 and tr_A0A2V5JA28_A0A2V5JA28_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A319BYW8_A0A319BYW8_9EURO_1448315 and tr_A0A2V5ILG0_A0A2V5ILG0_9EURO_1450538 are exactly identical! WARNING: Duplicate sequences found: 117 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVI7/3_mltree/Q9NVI7.raxml.reduced.phy Alignment comprises 1 partitions and 195 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 195 / 195 Gaps: 2.70 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVI7/3_mltree/Q9NVI7.raxml.rba Parallelization scheme autoconfig: 4 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 999 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 195 / 15600 [00:00:00] Data distribution: max. searches per worker: 5 Starting ML tree search with 20 distinct starting trees [00:00:00 -360526.601059] Initial branch length optimization [00:00:04 -290721.331272] Model parameter optimization (eps = 10.000000) [00:00:54 -290110.075126] AUTODETECT spr round 1 (radius: 5) [00:03:37 -194570.532077] AUTODETECT spr round 2 (radius: 10) [00:06:40 -146755.931530] AUTODETECT spr round 3 (radius: 15) [00:10:10 -112688.358042] AUTODETECT spr round 4 (radius: 20) [00:13:34 -102333.743164] AUTODETECT spr round 5 (radius: 25) [00:17:49 -97788.370913] SPR radius for FAST iterations: 25 (autodetect) [00:17:50 -97788.370913] Model parameter optimization (eps = 3.000000) [00:18:15 -97540.426173] FAST spr round 1 (radius: 25) [00:21:43 -75634.659919] FAST spr round 2 (radius: 25) [00:24:03 -71173.071328] FAST spr round 3 (radius: 25) [00:26:00 -70569.448309] FAST spr round 4 (radius: 25) [00:27:48 -70549.982961] FAST spr round 5 (radius: 25) [00:29:27 -70549.459202] FAST spr round 6 (radius: 25) [00:31:06 -70549.459161] Model parameter optimization (eps = 1.000000) [00:31:23 -70544.569487] SLOW spr round 1 (radius: 5) [00:33:43 -70528.577906] SLOW spr round 2 (radius: 5) [00:36:01 -70526.160781] SLOW spr round 3 (radius: 5) [00:38:18 -70525.333207] SLOW spr round 4 (radius: 5) [00:40:34 -70525.333171] SLOW spr round 5 (radius: 10) [00:42:49 -70523.498157] SLOW spr round 6 (radius: 5) [00:45:41 -70523.498138] SLOW spr round 7 (radius: 10) [00:48:10 -70523.498133] SLOW spr round 8 (radius: 15) [00:51:49 -70521.560544] SLOW spr round 9 (radius: 5) [00:54:46 -70520.128017] SLOW spr round 10 (radius: 5) [00:57:23 -70520.127740] SLOW spr round 11 (radius: 10) [00:59:38 -70520.127733] SLOW spr round 12 (radius: 15) [01:00:26] [worker #1] ML tree search #2, logLikelihood: -70536.967602 [01:03:08 -70520.127732] SLOW spr round 13 (radius: 20) [01:08:45 -70520.127730] SLOW spr round 14 (radius: 25) [01:12:16] [worker #3] ML tree search #4, logLikelihood: -80223.164531 [01:15:31 -70519.978624] SLOW spr round 15 (radius: 5) [01:18:45 -70519.978308] SLOW spr round 16 (radius: 10) [01:21:38 -70519.978304] SLOW spr round 17 (radius: 15) [01:23:24] [worker #2] ML tree search #3, logLikelihood: -70526.539245 [01:25:25 -70519.978303] SLOW spr round 18 (radius: 20) [01:31:27 -70519.978302] SLOW spr round 19 (radius: 25) [01:38:28 -70519.978301] Model parameter optimization (eps = 0.100000) [01:38:34] [worker #0] ML tree search #1, logLikelihood: -70519.955848 [01:38:34 -360261.019462] Initial branch length optimization [01:38:39 -289032.865220] Model parameter optimization (eps = 10.000000) [01:39:25 -288497.800840] AUTODETECT spr round 1 (radius: 5) [01:42:24 -192288.760110] AUTODETECT spr round 2 (radius: 10) [01:45:35 -148160.461208] AUTODETECT spr round 3 (radius: 15) [01:49:10 -122247.071543] AUTODETECT spr round 4 (radius: 20) [01:52:58 -110620.537409] AUTODETECT spr round 5 (radius: 25) [01:56:01] [worker #1] ML tree search #6, logLikelihood: -78115.237466 [01:57:07 -100312.393713] SPR radius for FAST iterations: 25 (autodetect) [01:57:07 -100312.393713] Model parameter optimization (eps = 3.000000) [01:57:36 -100090.989027] FAST spr round 1 (radius: 25) [02:00:59 -78785.035257] FAST spr round 2 (radius: 25) [02:03:36 -75841.940829] FAST spr round 3 (radius: 25) [02:05:48 -72233.495130] FAST spr round 4 (radius: 25) [02:07:49 -70960.229609] FAST spr round 5 (radius: 25) [02:09:49 -70627.637212] FAST spr round 6 (radius: 25) [02:11:47 -70584.458839] FAST spr round 7 (radius: 25) [02:13:35 -70583.137865] FAST spr round 8 (radius: 25) [02:15:22 -70583.137759] Model parameter optimization (eps = 1.000000) [02:15:40 -70576.014217] SLOW spr round 1 (radius: 5) [02:18:09 -70554.531191] SLOW spr round 2 (radius: 5) [02:20:37 -70549.522400] SLOW spr round 3 (radius: 5) [02:23:03 -70546.517361] SLOW spr round 4 (radius: 5) [02:25:27 -70540.181102] SLOW spr round 5 (radius: 5) [02:27:48 -70540.179973] SLOW spr round 6 (radius: 10) [02:30:10 -70537.809115] SLOW spr round 7 (radius: 5) [02:33:16 -70534.944618] SLOW spr round 8 (radius: 5) [02:36:01 -70533.894695] SLOW spr round 9 (radius: 5) [02:38:32 -70533.502582] SLOW spr round 10 (radius: 5) [02:40:55 -70533.501051] SLOW spr round 11 (radius: 10) [02:43:16 -70533.035712] SLOW spr round 12 (radius: 5) [02:46:10] [worker #3] ML tree search #8, logLikelihood: -70504.738082 [02:46:17 -70533.035442] SLOW spr round 13 (radius: 10) [02:48:55 -70533.035385] SLOW spr round 14 (radius: 15) [02:52:39 -70533.035343] SLOW spr round 15 (radius: 20) [02:58:13 -70533.035311] SLOW spr round 16 (radius: 25) [02:58:55] [worker #2] ML tree search #7, logLikelihood: -70525.159396 [03:04:58 -70533.035284] Model parameter optimization (eps = 0.100000) [03:05:07] [worker #0] ML tree search #5, logLikelihood: -70532.804921 [03:05:07 -361243.021897] Initial branch length optimization [03:05:12 -290382.688850] Model parameter optimization (eps = 10.000000) [03:05:19] [worker #1] ML tree search #10, logLikelihood: -71139.881866 [03:05:56 -289854.791753] AUTODETECT spr round 1 (radius: 5) [03:08:52 -194333.038294] AUTODETECT spr round 2 (radius: 10) [03:12:08 -147061.430892] AUTODETECT spr round 3 (radius: 15) [03:15:32 -121357.443836] AUTODETECT spr round 4 (radius: 20) [03:19:09 -106105.867599] AUTODETECT spr round 5 (radius: 25) [03:23:12 -102189.943755] SPR radius for FAST iterations: 25 (autodetect) [03:23:12 -102189.943755] Model parameter optimization (eps = 3.000000) [03:23:38 -101954.399589] FAST spr round 1 (radius: 25) [03:27:03 -79572.762703] FAST spr round 2 (radius: 25) [03:29:29 -76376.668470] FAST spr round 3 (radius: 25) [03:31:37 -76199.831964] FAST spr round 4 (radius: 25) [03:33:33 -76182.542499] FAST spr round 5 (radius: 25) [03:35:24 -76177.817285] FAST spr round 6 (radius: 25) [03:37:14 -76177.817283] Model parameter optimization (eps = 1.000000) [03:37:33 -76172.804237] SLOW spr round 1 (radius: 5) [03:40:11 -76157.170464] SLOW spr round 2 (radius: 5) [03:42:45 -76150.335928] SLOW spr round 3 (radius: 5) [03:45:13 -76148.485148] SLOW spr round 4 (radius: 5) [03:47:41 -76147.303060] SLOW spr round 5 (radius: 5) [03:50:05 -76147.303023] SLOW spr round 6 (radius: 10) [03:52:31 -76145.573645] SLOW spr round 7 (radius: 5) [03:55:41 -76142.249448] SLOW spr round 8 (radius: 5) [03:58:25 -76142.248533] SLOW spr round 9 (radius: 10) [04:00:56 -76142.248504] SLOW spr round 10 (radius: 15) [04:05:04 -76142.248503] SLOW spr round 11 (radius: 20) [04:05:10] [worker #2] ML tree search #11, logLikelihood: -70511.342339 [04:10:19 -76142.248503] SLOW spr round 12 (radius: 25) [04:16:15 -76142.248502] Model parameter optimization (eps = 0.100000) [04:16:22] [worker #0] ML tree search #9, logLikelihood: -76142.175360 [04:16:22 -362728.562211] Initial branch length optimization [04:16:27 -288122.989342] Model parameter optimization (eps = 10.000000) [04:17:09 -287636.915775] AUTODETECT spr round 1 (radius: 5) [04:19:08] [worker #3] ML tree search #12, logLikelihood: -70504.582861 [04:20:09 -196941.860103] AUTODETECT spr round 2 (radius: 10) [04:23:25 -152324.914807] AUTODETECT spr round 3 (radius: 15) [04:27:00 -115819.017502] AUTODETECT spr round 4 (radius: 20) [04:30:46 -98575.048112] AUTODETECT spr round 5 (radius: 25) [04:34:28 -95476.787994] SPR radius for FAST iterations: 25 (autodetect) [04:34:28 -95476.787994] Model parameter optimization (eps = 3.000000) [04:34:56 -95188.332718] FAST spr round 1 (radius: 25) [04:38:15 -76207.835794] FAST spr round 2 (radius: 25) [04:40:43 -71205.145289] FAST spr round 3 (radius: 25) [04:42:51 -70592.313642] FAST spr round 4 (radius: 25) [04:44:51 -70564.325653] FAST spr round 5 (radius: 25) [04:46:42 -70564.297996] Model parameter optimization (eps = 1.000000) [04:46:58 -70549.833997] SLOW spr round 1 (radius: 5) [04:49:32 -70524.729718] SLOW spr round 2 (radius: 5) [04:52:04 -70518.953769] SLOW spr round 3 (radius: 5) [04:54:31 -70514.631937] SLOW spr round 4 (radius: 5) [04:56:52 -70514.631413] SLOW spr round 5 (radius: 10) [04:59:13 -70512.699883] SLOW spr round 6 (radius: 5) [05:02:15 -70512.699556] SLOW spr round 7 (radius: 10) [05:04:53 -70512.699424] SLOW spr round 8 (radius: 15) [05:05:54] [worker #1] ML tree search #14, logLikelihood: -70513.058353 [05:08:35 -70512.699329] SLOW spr round 9 (radius: 20) [05:14:04 -70512.699259] SLOW spr round 10 (radius: 25) [05:20:35 -70512.699208] Model parameter optimization (eps = 0.100000) [05:20:44] [worker #0] ML tree search #13, logLikelihood: -70512.680871 [05:20:44 -361398.109202] Initial branch length optimization [05:20:49 -287706.005358] Model parameter optimization (eps = 10.000000) [05:21:41 -287091.790350] AUTODETECT spr round 1 (radius: 5) [05:24:41 -196751.110303] AUTODETECT spr round 2 (radius: 10) [05:27:52 -146667.183497] AUTODETECT spr round 3 (radius: 15) [05:31:04 -118296.473288] AUTODETECT spr round 4 (radius: 20) [05:34:37 -102300.505572] AUTODETECT spr round 5 (radius: 25) [05:38:09 -95538.823758] SPR radius for FAST iterations: 25 (autodetect) [05:38:09 -95538.823758] Model parameter optimization (eps = 3.000000) [05:38:34 -95346.395340] FAST spr round 1 (radius: 25) [05:40:48] [worker #2] ML tree search #15, logLikelihood: -70541.702773 [05:41:41 -73795.443325] FAST spr round 2 (radius: 25) [05:44:03 -71324.695607] FAST spr round 3 (radius: 25) [05:46:14 -71196.571057] FAST spr round 4 (radius: 25) [05:48:09 -71186.642308] FAST spr round 5 (radius: 25) [05:49:53 -71186.641934] Model parameter optimization (eps = 1.000000) [05:50:11 -71176.048779] SLOW spr round 1 (radius: 5) [05:52:39 -71147.031262] SLOW spr round 2 (radius: 5) [05:55:08 -71142.120327] SLOW spr round 3 (radius: 5) [05:57:36 -71140.574854] SLOW spr round 4 (radius: 5) [05:59:59 -71140.573911] SLOW spr round 5 (radius: 10) [06:02:21 -71140.573286] SLOW spr round 6 (radius: 15) [06:06:16 -71139.404999] SLOW spr round 7 (radius: 5) [06:09:28 -71139.209786] SLOW spr round 8 (radius: 5) [06:12:15 -71136.936333] SLOW spr round 9 (radius: 5) [06:14:47 -71136.936006] SLOW spr round 10 (radius: 10) [06:17:11 -71136.935957] SLOW spr round 11 (radius: 15) [06:21:01 -71136.935925] SLOW spr round 12 (radius: 20) [06:25:42 -71136.209150] SLOW spr round 13 (radius: 5) [06:28:56 -71136.161485] SLOW spr round 14 (radius: 10) [06:31:49 -71136.161234] SLOW spr round 15 (radius: 15) [06:35:14] [worker #3] ML tree search #16, logLikelihood: -70511.548069 [06:35:19 -71136.161213] SLOW spr round 16 (radius: 20) [06:40:09 -71136.161202] SLOW spr round 17 (radius: 25) [06:45:53 -71136.161194] Model parameter optimization (eps = 0.100000) [06:46:06] [worker #0] ML tree search #17, logLikelihood: -71135.743727 [06:56:39] [worker #2] ML tree search #19, logLikelihood: -70522.255117 [07:54:01] [worker #1] ML tree search #18, logLikelihood: -70530.264077 [07:54:32] [worker #3] ML tree search #20, logLikelihood: -70516.347091 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.153150,0.384829) (0.320932,0.381207) (0.315701,0.822738) (0.210217,2.659074) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -70504.582861 AIC score: 145011.165722 / AICc score: 8157015.165722 / BIC score: 151560.437838 Free parameters (model + branch lengths): 2001 WARNING: Number of free parameters (K=2001) is larger than alignment size (n=195). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 137 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVI7/3_mltree/Q9NVI7.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVI7/3_mltree/Q9NVI7.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVI7/3_mltree/Q9NVI7.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVI7/3_mltree/Q9NVI7.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9NVI7/3_mltree/Q9NVI7.raxml.log Analysis started: 05-Jul-2021 13:35:03 / finished: 05-Jul-2021 21:29:36 Elapsed time: 28472.858 seconds Consumed energy: 2325.569 Wh (= 12 km in an electric car, or 58 km with an e-scooter!)