RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 04-Jun-2021 13:46:35 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NQU5/2_msa/Q9NQU5_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NQU5/3_mltree/Q9NQU5.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NQU5/4_raxmlng_ancestral/Q9NQU5 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622803595 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NQU5/2_msa/Q9NQU5_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 681 sites WARNING: Sequences tr_B4QYA7_B4QYA7_DROSI_7240 and tr_B4I4F1_B4I4F1_DROSE_7238 are exactly identical! WARNING: Sequences tr_F1N8W8_F1N8W8_CHICK_9031 and tr_G1N3Y2_G1N3Y2_MELGA_9103 are exactly identical! WARNING: Sequences sp_Q8CIN4_PAK2_MOUSE_10090 and sp_Q64303_PAK2_RAT_10116 are exactly identical! WARNING: Sequences tr_G9KF16_G9KF16_MUSPF_9669 and tr_A0A2U3YGT3_A0A2U3YGT3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G9KF16_G9KF16_MUSPF_9669 and tr_A0A2Y9KC05_A0A2Y9KC05_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G9KF16_G9KF16_MUSPF_9669 and tr_A0A384DHR0_A0A384DHR0_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YWY4_M3YWY4_MUSPF_9669 and tr_A0A2Y9KDZ3_A0A2Y9KDZ3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3H1C6_A0A2I3H1C6_NOMLE_61853 and tr_A0A2I2ZK29_A0A2I2ZK29_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3H1C6_A0A2I3H1C6_NOMLE_61853 and tr_H2PWH8_H2PWH8_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3H1C6_A0A2I3H1C6_NOMLE_61853 and sp_Q7YQL4_PAK3_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3H1C6_A0A2I3H1C6_NOMLE_61853 and sp_O75914_PAK3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3H1C6_A0A2I3H1C6_NOMLE_61853 and tr_A0A2R8ZSV4_A0A2R8ZSV4_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3H6Y7_A0A2I3H6Y7_NOMLE_61853 and tr_H2NER3_H2NER3_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3H6Y7_A0A2I3H6Y7_NOMLE_61853 and sp_Q13153_PAK1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3H6Y7_A0A2I3H6Y7_NOMLE_61853 and tr_F7GZK8_F7GZK8_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3GSK4_G3GSK4_CRIGR_10029 and tr_A0A3Q0CUC8_A0A3Q0CUC8_MESAU_10036 are exactly identical! WARNING: Sequences tr_J3KIR3_J3KIR3_COCIM_246410 and tr_A0A0J7AV16_A0A0J7AV16_COCIT_404692 are exactly identical! WARNING: Sequences tr_B2W9G0_B2W9G0_PYRTR_426418 and tr_A0A2W1FYG6_A0A2W1FYG6_9PLEO_45151 are exactly identical! WARNING: Sequences tr_G3QKW6_G3QKW6_GORGO_9595 and tr_H2Q4G3_H2Q4G3_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1TUX8_G1TUX8_RABIT_9986 and tr_F7DUY7_F7DUY7_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1TUX8_G1TUX8_RABIT_9986 and tr_W5Q8L5_W5Q8L5_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G1TUX8_G1TUX8_RABIT_9986 and tr_I3MDM0_I3MDM0_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1TUX8_G1TUX8_RABIT_9986 and tr_F6XUQ0_F6XUQ0_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1TUX8_G1TUX8_RABIT_9986 and tr_G5C7Y8_G5C7Y8_HETGA_10181 are exactly identical! WARNING: Sequences tr_G1TUX8_G1TUX8_RABIT_9986 and tr_F6VGN4_F6VGN4_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1TUX8_G1TUX8_RABIT_9986 and tr_G1M071_G1M071_AILME_9646 are exactly identical! WARNING: Sequences tr_G1TUX8_G1TUX8_RABIT_9986 and tr_G7Q3H1_G7Q3H1_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1TUX8_G1TUX8_RABIT_9986 and tr_A0A2I3LTI6_A0A2I3LTI6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1TUX8_G1TUX8_RABIT_9986 and tr_A0A3Q0EI49_A0A3Q0EI49_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1TUX8_G1TUX8_RABIT_9986 and tr_A0A2K5MQE5_A0A2K5MQE5_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1TUX8_G1TUX8_RABIT_9986 and tr_A0A2K6DAK1_A0A2K6DAK1_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1TUX8_G1TUX8_RABIT_9986 and tr_A0A2K5ZXD8_A0A2K5ZXD8_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1TUX8_G1TUX8_RABIT_9986 and tr_A0A2U4CHT1_A0A2U4CHT1_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1TUX8_G1TUX8_RABIT_9986 and tr_A0A2U3VWF1_A0A2U3VWF1_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1TUX8_G1TUX8_RABIT_9986 and tr_A0A2Y9DRU1_A0A2Y9DRU1_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G1TUX8_G1TUX8_RABIT_9986 and tr_A0A2Y9M4U0_A0A2Y9M4U0_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1TUX8_G1TUX8_RABIT_9986 and tr_A0A2Y9EPB5_A0A2Y9EPB5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1TUX8_G1TUX8_RABIT_9986 and tr_A0A384A728_A0A384A728_BALAS_310752 are exactly identical! WARNING: Sequences tr_B8N4E0_B8N4E0_ASPFN_332952 and sp_Q2ULU3_STE20_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8N4E0_B8N4E0_ASPFN_332952 and tr_A0A1S9DNN6_A0A1S9DNN6_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_A0A2J8MSR9_A0A2J8MSR9_PANTR_9598 and tr_A0A2R8ZLQ7_A0A2R8ZLQ7_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7A4M5_F7A4M5_MONDO_13616 and tr_G3VVJ3_G3VVJ3_SARHA_9305 are exactly identical! WARNING: Sequences tr_F9FL64_F9FL64_FUSOF_660025 and tr_X0CU75_X0CU75_FUSOX_1089458 are exactly identical! WARNING: Sequences sp_P35465_PAK1_RAT_10116 and tr_A0A3Q0EBI9_A0A3Q0EBI9_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A088ABF9_A0A088ABF9_APIME_7460 and tr_A0A2A3E8L3_A0A2A3E8L3_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NKY9_A0A158NKY9_ATTCE_12957 and tr_A0A151I2G7_A0A151I2G7_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NRW3_A0A158NRW3_ATTCE_12957 and tr_A0A195BQW3_A0A195BQW3_9HYME_520822 are exactly identical! WARNING: Sequences sp_Q13177_PAK2_HUMAN_9606 and tr_A0A2R9B9H6_A0A2R9B9H6_PANPA_9597 are exactly identical! WARNING: Sequences tr_A2QW94_A2QW94_ASPNC_425011 and tr_A0A319AAM4_A0A319AAM4_9EURO_1450533 are exactly identical! WARNING: Sequences tr_F7FKL1_F7FKL1_MACMU_9544 and tr_G7PGY7_G7PGY7_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7FKL1_F7FKL1_MACMU_9544 and tr_A0A2K6B4X2_A0A2K6B4X2_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7GWI2_F7GWI2_MACMU_9544 and tr_G7NYS7_G7NYS7_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7GWI2_F7GWI2_MACMU_9544 and tr_A0A096MQ55_A0A096MQ55_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7GWI2_F7GWI2_MACMU_9544 and tr_A0A2K5N5N4_A0A2K5N5N4_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7XAD0_G7XAD0_ASPKW_1033177 and tr_A0A146F9J8_A0A146F9J8_9EURO_1069201 are exactly identical! WARNING: Sequences tr_H0Z1X4_H0Z1X4_TAEGU_59729 and tr_U3JEI2_U3JEI2_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0Z1X4_H0Z1X4_TAEGU_59729 and tr_A0A2I0LS69_A0A2I0LS69_COLLI_8932 are exactly identical! WARNING: Sequences tr_H0Z1X4_H0Z1X4_TAEGU_59729 and tr_A0A218V3T1_A0A218V3T1_9PASE_299123 are exactly identical! WARNING: Sequences tr_G2Y2V0_G2Y2V0_BOTF4_999810 and tr_M7U558_M7U558_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_A0A337SA46_A0A337SA46_FELCA_9685 and tr_A0A2Y9L195_A0A2Y9L195_ENHLU_391180 are exactly identical! WARNING: Sequences tr_S0DPP9_S0DPP9_GIBF5_1279085 and tr_A0A365N7F7_A0A365N7F7_GIBIN_948311 are exactly identical! WARNING: Sequences tr_N4UDT3_N4UDT3_FUSC1_1229664 and tr_A0A2H3T9Q9_A0A2H3T9Q9_FUSOX_5507 are exactly identical! WARNING: Sequences tr_N4UDT3_N4UDT3_FUSC1_1229664 and tr_A0A2H3HLZ8_A0A2H3HLZ8_FUSOX_327505 are exactly identical! WARNING: Sequences tr_A0A096N2S4_A0A096N2S4_PAPAN_9555 and tr_A0A0D9QV01_A0A0D9QV01_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096N2S4_A0A096N2S4_PAPAN_9555 and tr_A0A2K5LUS9_A0A2K5LUS9_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096N2S4_A0A096N2S4_PAPAN_9555 and tr_A0A2K6E8T4_A0A2K6E8T4_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A096N2S4_A0A096N2S4_PAPAN_9555 and tr_A0A2K5YT75_A0A2K5YT75_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A094EPM8_A0A094EPM8_9PEZI_1420912 and tr_A0A1B8GPC4_A0A1B8GPC4_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A0D9QV87_A0A0D9QV87_CHLSB_60711 and tr_A0A2K5NMW1_A0A2K5NMW1_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0F4GYA7_A0A0F4GYA7_9PEZI_1047168 and tr_A0A1X7RR12_A0A1X7RR12_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_A0A091EQ98_A0A091EQ98_CORBR_85066 and tr_A0A093PYI0_A0A093PYI0_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A093PBA6_A0A093PBA6_9PASS_328815 and tr_A0A091VLY1_A0A091VLY1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A093PBA6_A0A093PBA6_9PASS_328815 and tr_A0A1V4KYG2_A0A1V4KYG2_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A087QI32_A0A087QI32_APTFO_9233 and tr_A0A091G6Q4_A0A091G6Q4_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A087QI32_A0A087QI32_APTFO_9233 and tr_A0A0A0AT87_A0A0A0AT87_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A087RD53_A0A087RD53_APTFO_9233 and tr_A0A0A0AGI4_A0A0A0AGI4_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A100IK12_A0A100IK12_ASPNG_5061 and tr_A0A1L9N191_A0A1L9N191_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A0A151X419_A0A151X419_9HYME_64791 and tr_A0A151IM09_A0A151IM09_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A226N4D6_A0A226N4D6_CALSU_9009 and tr_A0A226PEU4_A0A226PEU4_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0R9J1_A0A2D0R9J1_ICTPU_7998 and tr_A0A2D0RBK2_A0A2D0RBK2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5KLM9_A0A2K5KLM9_CERAT_9531 and tr_A0A2K5XKA4_A0A2K5XKA4_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2K5KYJ0_A0A2K5KYJ0_CERAT_9531 and tr_A0A2K5XMN5_A0A2K5XMN5_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4ABV6_A0A2U4ABV6_TURTR_9739 and tr_A0A2Y9MTT2_A0A2Y9MTT2_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4ABV6_A0A2U4ABV6_TURTR_9739 and tr_A0A2Y9F6X9_A0A2Y9F6X9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3VBI6_A0A2U3VBI6_ODORO_9708 and tr_A0A2U3Y773_A0A2U3Y773_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3VBI6_A0A2U3VBI6_ODORO_9708 and tr_A0A384DEZ9_A0A384DEZ9_URSMA_29073 are exactly identical! WARNING: Duplicate sequences found: 86 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NQU5/4_raxmlng_ancestral/Q9NQU5.raxml.reduced.phy Alignment comprises 1 partitions and 681 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 681 Gaps: 28.98 % Invariant sites: 1.76 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NQU5/4_raxmlng_ancestral/Q9NQU5.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NQU5/3_mltree/Q9NQU5.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 171 / 13680 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -153245.970394 [00:00:00 -153245.970394] Initial branch length optimization [00:00:01 -150349.194117] Model parameter optimization (eps = 0.100000) [00:00:50] Tree #1, final logLikelihood: -149963.704150 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.193206,0.124889) (0.127446,0.193297) (0.222887,0.565578) (0.456461,1.807768) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NQU5/4_raxmlng_ancestral/Q9NQU5.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NQU5/4_raxmlng_ancestral/Q9NQU5.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NQU5/4_raxmlng_ancestral/Q9NQU5.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9NQU5/4_raxmlng_ancestral/Q9NQU5.raxml.log Analysis started: 04-Jun-2021 13:46:35 / finished: 04-Jun-2021 13:47:32 Elapsed time: 56.740 seconds