RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 02-Jul-2021 17:58:05 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9HC78/2_msa/Q9HC78_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9HC78/3_mltree/Q9HC78 --seed 2 --threads 5 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9HC78/2_msa/Q9HC78_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 315 sites

WARNING: Sequences sp_Q8K0L9_ZBT20_MOUSE_10090 and tr_G3SR31_G3SR31_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_M3YPR8_M3YPR8_MUSPF_9669 and tr_A0A2Y9K263_A0A2Y9K263_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_G1RAS0_G1RAS0_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2I2Z5M2_A0A2I2Z5M2_GORGO_9595 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2J8SJ28_A0A2J8SJ28_PONAB_9601 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_J9NZD8_J9NZD8_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_H2R0W5_H2R0W5_PANTR_9598 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_F6UAE9_F6UAE9_HORSE_9796 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_W5PCH7_W5PCH7_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_H0X021_H0X021_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_F7GDG2_F7GDG2_MACMU_9544 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_G5BHZ0_G5BHZ0_HETGA_10181 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_G3TA35_G3TA35_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_U3DKP1_U3DKP1_CALJA_9483 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A287AY13_A0A287AY13_PIG_9823 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_G1LSL0_G1LSL0_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_E1BMZ4_E1BMZ4_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2I2UHS2_A0A2I2UHS2_FELCA_9685 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A096MVU8_A0A096MVU8_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A091DPZ0_A0A091DPZ0_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A0D9S896_A0A0D9S896_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A1S3A3L2_A0A1S3A3L2_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A1S3GP01_A0A1S3GP01_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A1U7U3Z7_A0A1U7U3Z7_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2K5LPR7_A0A2K5LPR7_CERAT_9531 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2K6BKJ1_A0A2K6BKJ1_MACNE_9545 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2K5YGK7_A0A2K5YGK7_MANLE_9568 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2R9BGK0_A0A2R9BGK0_PANPA_9597 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2U3VJB5_A0A2U3VJB5_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2U3Y1N2_A0A2U3Y1N2_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2Y9KFZ4_A0A2Y9KFZ4_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2Y9LKY1_A0A2Y9LKY1_DELLE_9749 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A384CDE3_A0A384CDE3_URSMA_29073 are exactly identical!
WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A383ZJ36_A0A383ZJ36_BALAS_310752 are exactly identical!
WARNING: Sequences tr_G1QTE0_G1QTE0_NOMLE_61853 and tr_G3QIX5_G3QIX5_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1QTE0_G1QTE0_NOMLE_61853 and tr_H2PYV9_H2PYV9_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1QTE0_G1QTE0_NOMLE_61853 and sp_P17025_ZN182_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1QTE0_G1QTE0_NOMLE_61853 and tr_F7A3W7_F7A3W7_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G1QTE0_G1QTE0_NOMLE_61853 and tr_F1RW59_F1RW59_PIG_9823 are exactly identical!
WARNING: Sequences tr_G1QTE0_G1QTE0_NOMLE_61853 and tr_A0A3Q0DNS4_A0A3Q0DNS4_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G1QTE0_G1QTE0_NOMLE_61853 and tr_A0A2Y9MKI8_A0A2Y9MKI8_DELLE_9749 are exactly identical!
WARNING: Sequences tr_G3REJ6_G3REJ6_GORGO_9595 and tr_H2RBQ5_H2RBQ5_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3REJ6_G3REJ6_GORGO_9595 and sp_Q5JVG2_ZN484_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3REJ6_G3REJ6_GORGO_9595 and tr_A0A2R9B4T7_A0A2R9B4T7_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_K7EUX3_K7EUX3_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_G1SLC7_G1SLC7_RABIT_9986 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_E2R2Y8_E2R2Y8_CANLF_9615 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_H2R2C4_H2R2C4_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_H0XMI5_H0XMI5_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and sp_Q9HC78_ZBT20_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_F7HP86_F7HP86_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_G5AL40_G5AL40_HETGA_10181 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_F6UEA4_F6UEA4_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_I3L6W1_I3L6W1_PIG_9823 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_G1LFL9_G1LFL9_AILME_9646 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_G7NXM5_G7NXM5_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_F1MDT4_F1MDT4_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_M3WT24_M3WT24_FELCA_9685 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_A0A2I3NGD6_A0A2I3NGD6_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_A0A091E6M0_A0A091E6M0_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_A0A0D9R3N8_A0A0D9R3N8_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_A0A1S3G7M6_A0A1S3G7M6_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_A0A1U7UFJ1_A0A1U7UFJ1_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_A0A2K5NUP6_A0A2K5NUP6_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_A0A2K6D1B4_A0A2K6D1B4_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_A0A2K5YSS5_A0A2K5YSS5_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_A0A2R9B2C7_A0A2R9B2C7_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_A0A2U4AAW5_A0A2U4AAW5_TURTR_9739 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_A0A2U3WYY8_A0A2U3WYY8_ODORO_9708 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_A0A2Y9QYG8_A0A2Y9QYG8_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_A0A2Y9JP08_A0A2Y9JP08_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_A0A2Y9SEW3_A0A2Y9SEW3_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_G3SER6_G3SER6_GORGO_9595 and tr_A0A384A3R9_A0A384A3R9_BALAS_310752 are exactly identical!
WARNING: Sequences tr_H2PSL2_H2PSL2_PONAB_9601 and tr_F6WPL2_F6WPL2_MACMU_9544 are exactly identical!
WARNING: Sequences tr_H2PSL2_H2PSL2_PONAB_9601 and tr_G8F5F8_G8F5F8_MACFA_9541 are exactly identical!
WARNING: Sequences tr_H2PSL2_H2PSL2_PONAB_9601 and tr_A0A096P1R1_A0A096P1R1_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_H2PSL2_H2PSL2_PONAB_9601 and tr_A0A0D9R3R7_A0A0D9R3R7_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_H2PSL2_H2PSL2_PONAB_9601 and tr_A0A2K6DSI0_A0A2K6DSI0_MACNE_9545 are exactly identical!
WARNING: Sequences tr_H2PSL2_H2PSL2_PONAB_9601 and tr_A0A2K6AK49_A0A2K6AK49_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2I3T5G3_A0A2I3T5G3_PANTR_9598 and sp_Q6P2D0_ZFP1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3T5G3_A0A2I3T5G3_PANTR_9598 and tr_A0A2R9ARX2_A0A2R9ARX2_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2J8JLK3_A0A2J8JLK3_PANTR_9598 and tr_A0A2R9A954_A0A2R9A954_PANPA_9597 are exactly identical!
WARNING: Sequences tr_K7AYK2_K7AYK2_PANTR_9598 and tr_A0A2R8ZEX5_A0A2R8ZEX5_PANPA_9597 are exactly identical!
WARNING: Sequences tr_W5PSR5_W5PSR5_SHEEP_9940 and tr_Q29RN3_Q29RN3_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_W5PSR5_W5PSR5_SHEEP_9940 and tr_A0A2U4C0M9_A0A2U4C0M9_TURTR_9739 are exactly identical!
WARNING: Sequences tr_I3LZA1_I3LZA1_ICTTR_43179 and tr_A0A2Y9LR46_A0A2Y9LR46_DELLE_9749 are exactly identical!
WARNING: Sequences tr_F6PP83_F6PP83_MACMU_9544 and tr_G7Q1N0_G7Q1N0_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F6PP83_F6PP83_MACMU_9544 and tr_A0A2K5N5Y3_A0A2K5N5Y3_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6PP83_F6PP83_MACMU_9544 and tr_A0A2K6DPA7_A0A2K6DPA7_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6PP83_F6PP83_MACMU_9544 and tr_A0A2K5XNG6_A0A2K5XNG6_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F6YLL1_F6YLL1_MACMU_9544 and tr_G7PZ18_G7PZ18_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7D328_F7D328_MACMU_9544 and tr_G7Q2M0_G7Q2M0_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7D328_F7D328_MACMU_9544 and tr_A0A2I3N8I2_A0A2I3N8I2_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F7D328_F7D328_MACMU_9544 and tr_A0A0D9RM98_A0A0D9RM98_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F7D328_F7D328_MACMU_9544 and tr_A0A2K5LV43_A0A2K5LV43_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F7D328_F7D328_MACMU_9544 and tr_A0A2K6E2S4_A0A2K6E2S4_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7D328_F7D328_MACMU_9544 and tr_A0A2K5XRB6_A0A2K5XRB6_MANLE_9568 are exactly identical!
WARNING: Sequences tr_H0ZT54_H0ZT54_TAEGU_59729 and tr_U3I4M8_U3I4M8_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_H0ZT54_H0ZT54_TAEGU_59729 and tr_A0A091EMZ3_A0A091EMZ3_CORBR_85066 are exactly identical!
WARNING: Sequences tr_H0ZT54_H0ZT54_TAEGU_59729 and tr_A0A093PTP5_A0A093PTP5_9PASS_328815 are exactly identical!
WARNING: Sequences tr_H0ZT54_H0ZT54_TAEGU_59729 and tr_A0A087QL70_A0A087QL70_APTFO_9233 are exactly identical!
WARNING: Sequences tr_H0ZT54_H0ZT54_TAEGU_59729 and tr_A0A2I0MS59_A0A2I0MS59_COLLI_8932 are exactly identical!
WARNING: Sequences tr_H0ZT54_H0ZT54_TAEGU_59729 and tr_A0A093I687_A0A093I687_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_H0ZT54_H0ZT54_TAEGU_59729 and tr_A0A091I876_A0A091I876_CALAN_9244 are exactly identical!
WARNING: Sequences tr_H0ZT54_H0ZT54_TAEGU_59729 and tr_A0A1V4J362_A0A1V4J362_PATFA_372326 are exactly identical!
WARNING: Sequences tr_H0ZT54_H0ZT54_TAEGU_59729 and tr_A0A218VD04_A0A218VD04_9PASE_299123 are exactly identical!
WARNING: Sequences tr_G1M2F0_G1M2F0_AILME_9646 and tr_A0A384C652_A0A384C652_URSMA_29073 are exactly identical!
WARNING: Sequences tr_A0A096NS05_A0A096NS05_PAPAN_9555 and tr_A0A0D9QUP7_A0A0D9QUP7_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A0A0MU74_A0A0A0MU74_PAPAN_9555 and tr_A0A0D9S6E5_A0A0D9S6E5_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A0A0MU74_A0A0A0MU74_PAPAN_9555 and tr_A0A2K6DGH3_A0A2K6DGH3_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A0A0MW60_A0A0A0MW60_PAPAN_9555 and tr_A0A0D9S667_A0A0D9S667_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A151MD35_A0A151MD35_ALLMI_8496 and tr_A0A3Q0G7J5_A0A3Q0G7J5_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151P3Y5_A0A151P3Y5_ALLMI_8496 and tr_A0A1U7RQK2_A0A1U7RQK2_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A091JF88_A0A091JF88_EGRGA_188379 and tr_A0A091X0D5_A0A091X0D5_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A091JF88_A0A091JF88_EGRGA_188379 and tr_A0A087RJE9_A0A087RJE9_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A091JF88_A0A091JF88_EGRGA_188379 and tr_A0A093HWH9_A0A093HWH9_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A0A091JF88_A0A091JF88_EGRGA_188379 and tr_A0A0A0ADZ7_A0A0A0ADZ7_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A1S3L1M5_A0A1S3L1M5_SALSA_8030 and tr_A0A060WWQ5_A0A060WWQ5_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A226N4N8_A0A226N4N8_CALSU_9009 and tr_A0A226PVC6_A0A226PVC6_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A2D0QBK4_A0A2D0QBK4_ICTPU_7998 and tr_A0A2D0QD78_A0A2D0QD78_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2K5MPF9_A0A2K5MPF9_CERAT_9531 and tr_A0A2K5YBB4_A0A2K5YBB4_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2U3V332_A0A2U3V332_TURTR_9739 and tr_A0A2Y9MHT8_A0A2Y9MHT8_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U3V332_A0A2U3V332_TURTR_9739 and tr_A0A2Y9S5Z1_A0A2Y9S5Z1_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2U3WBF6_A0A2U3WBF6_ODORO_9708 and tr_A0A2Y9IH85_A0A2Y9IH85_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_A0A2U3ZD98_A0A2U3ZD98_ODORO_9708 and tr_A0A2U3XL71_A0A2U3XL71_LEPWE_9713 are exactly identical!
WARNING: Duplicate sequences found: 125

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9HC78/3_mltree/Q9HC78.raxml.reduced.phy

Alignment comprises 1 partitions and 315 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 315 / 315
Gaps: 16.75 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9HC78/3_mltree/Q9HC78.raxml.rba

Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 315 / 25200
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -489637.726451] Initial branch length optimization
[00:00:10 -429808.398650] Model parameter optimization (eps = 10.000000)
[00:01:17 -429224.477105] AUTODETECT spr round 1 (radius: 5)
[00:05:47 -325737.430377] AUTODETECT spr round 2 (radius: 10)
[00:11:00 -266222.006704] AUTODETECT spr round 3 (radius: 15)
[00:16:39 -241059.581943] AUTODETECT spr round 4 (radius: 20)
[00:22:46 -228871.349688] AUTODETECT spr round 5 (radius: 25)
[00:30:50 -224539.474892] SPR radius for FAST iterations: 25 (autodetect)
[00:30:50 -224539.474892] Model parameter optimization (eps = 3.000000)
[00:31:37 -224361.150355] FAST spr round 1 (radius: 25)
[00:42:19 -211875.575148] FAST spr round 2 (radius: 25)
[00:49:18 -210880.454371] FAST spr round 3 (radius: 25)
[00:54:43 -210723.413980] FAST spr round 4 (radius: 25)
[00:59:23 -210662.394519] FAST spr round 5 (radius: 25)
[01:03:27 -210643.816748] FAST spr round 6 (radius: 25)
[01:07:05 -210640.563522] FAST spr round 7 (radius: 25)
[01:10:30 -210640.563293] Model parameter optimization (eps = 1.000000)
[01:10:57 -210635.572284] SLOW spr round 1 (radius: 5)
[01:15:49 -210539.593811] SLOW spr round 2 (radius: 5)
[01:20:23 -210519.917135] SLOW spr round 3 (radius: 5)
[01:24:51 -210517.220727] SLOW spr round 4 (radius: 5)
[01:29:13 -210505.850815] SLOW spr round 5 (radius: 5)
[01:33:28 -210504.309168] SLOW spr round 6 (radius: 5)
[01:37:42 -210504.309136] SLOW spr round 7 (radius: 10)
[01:42:23 -210474.813340] SLOW spr round 8 (radius: 5)
[01:47:56 -210454.942567] SLOW spr round 9 (radius: 5)
[01:52:42 -210454.942075] SLOW spr round 10 (radius: 10)
[01:57:29 -210451.549827] SLOW spr round 11 (radius: 5)
[02:02:45 -210450.906921] SLOW spr round 12 (radius: 5)
[02:07:30 -210450.906752] SLOW spr round 13 (radius: 10)
[02:12:16 -210445.220332] SLOW spr round 14 (radius: 5)
[02:17:40 -210437.254099] SLOW spr round 15 (radius: 5)
[02:22:24 -210437.253492] SLOW spr round 16 (radius: 10)
[02:27:03 -210437.253422] SLOW spr round 17 (radius: 15)
[02:34:52 -210437.236600] SLOW spr round 18 (radius: 20)
[02:46:16 -210437.236469] SLOW spr round 19 (radius: 25)
[03:00:39 -210437.236465] Model parameter optimization (eps = 0.100000)

[03:00:49] [worker #0] ML tree search #1, logLikelihood: -210437.157084

[03:00:50 -486887.207071] Initial branch length optimization
[03:01:00 -427390.486978] Model parameter optimization (eps = 10.000000)
[03:02:09 -426825.888972] AUTODETECT spr round 1 (radius: 5)
[03:06:34 -322477.713555] AUTODETECT spr round 2 (radius: 10)
[03:11:43 -264795.717916] AUTODETECT spr round 3 (radius: 15)
[03:12:18] [worker #3] ML tree search #4, logLikelihood: -210022.523082
[03:17:08 -238246.305666] AUTODETECT spr round 4 (radius: 20)
[03:22:20] [worker #4] ML tree search #5, logLikelihood: -210073.285553
[03:24:04 -228248.586691] AUTODETECT spr round 5 (radius: 25)
[03:32:00 -224232.711834] SPR radius for FAST iterations: 25 (autodetect)
[03:32:00 -224232.711834] Model parameter optimization (eps = 3.000000)
[03:32:57 -223976.494371] FAST spr round 1 (radius: 25)
[03:44:00 -211563.777067] FAST spr round 2 (radius: 25)
[03:51:01 -210829.067031] FAST spr round 3 (radius: 25)
[03:56:41 -210711.573162] FAST spr round 4 (radius: 25)
[04:01:14 -210657.026322] FAST spr round 5 (radius: 25)
[04:05:09 -210650.706639] FAST spr round 6 (radius: 25)
[04:08:47 -210649.082833] FAST spr round 7 (radius: 25)
[04:12:16 -210645.851149] FAST spr round 8 (radius: 25)
[04:15:38 -210645.851102] Model parameter optimization (eps = 1.000000)
[04:16:05 -210636.705479] SLOW spr round 1 (radius: 5)
[04:20:51 -210561.185635] SLOW spr round 2 (radius: 5)
[04:25:24 -210554.688940] SLOW spr round 3 (radius: 5)
[04:29:56 -210551.567056] SLOW spr round 4 (radius: 5)
[04:34:19 -210549.568906] SLOW spr round 5 (radius: 5)
[04:38:39 -210549.568777] SLOW spr round 6 (radius: 10)
[04:43:20 -210542.599271] SLOW spr round 7 (radius: 5)
[04:48:46 -210539.178662] SLOW spr round 8 (radius: 5)
[04:53:46 -210538.518559] SLOW spr round 9 (radius: 5)
[04:58:21 -210538.505729] SLOW spr round 10 (radius: 10)
[05:03:25 -210528.244289] SLOW spr round 11 (radius: 5)
[05:07:18] [worker #2] ML tree search #3, logLikelihood: -210233.468427
[05:08:54 -210525.481642] SLOW spr round 12 (radius: 5)
[05:13:57 -210518.284995] SLOW spr round 13 (radius: 5)
[05:18:45 -210516.767221] SLOW spr round 14 (radius: 5)
[05:22:52 -210516.767164] SLOW spr round 15 (radius: 10)
[05:27:28 -210516.767119] SLOW spr round 16 (radius: 15)
[05:35:37 -210503.936992] SLOW spr round 17 (radius: 5)
[05:41:26 -210490.092205] SLOW spr round 18 (radius: 5)
[05:46:35 -210477.031307] SLOW spr round 19 (radius: 5)
[05:51:18 -210474.003445] SLOW spr round 20 (radius: 5)
[05:55:45 -210474.003363] SLOW spr round 21 (radius: 10)
[06:00:19 -210474.003356] SLOW spr round 22 (radius: 15)
[06:08:18 -210474.003355] SLOW spr round 23 (radius: 20)
[06:21:05 -210470.076381] SLOW spr round 24 (radius: 5)
[06:26:38 -210468.430889] SLOW spr round 25 (radius: 5)
[06:31:37 -210467.760275] SLOW spr round 26 (radius: 5)
[06:32:42] [worker #1] ML tree search #2, logLikelihood: -210766.804617
[06:36:16 -210467.760268] SLOW spr round 27 (radius: 10)
[06:40:57 -210467.760268] SLOW spr round 28 (radius: 15)
[06:48:51 -210467.760268] SLOW spr round 29 (radius: 20)
[07:01:44 -210467.760268] SLOW spr round 30 (radius: 25)
[07:16:42 -210453.729557] SLOW spr round 31 (radius: 5)
[07:22:37 -210331.038131] SLOW spr round 32 (radius: 5)
[07:27:57 -210290.284793] SLOW spr round 33 (radius: 5)
[07:32:49 -210236.928548] SLOW spr round 34 (radius: 5)
[07:37:17 -210236.928179] SLOW spr round 35 (radius: 10)
[07:41:53 -210236.928170] SLOW spr round 36 (radius: 15)
[07:49:48 -210236.928170] SLOW spr round 37 (radius: 20)
[08:02:35 -210236.783787] SLOW spr round 38 (radius: 5)
[08:08:06 -210236.782623] SLOW spr round 39 (radius: 10)
[08:11:31] [worker #4] ML tree search #10, logLikelihood: -210087.244752
[08:13:57 -210236.782580] SLOW spr round 40 (radius: 15)
[08:19:48 -210236.782578] SLOW spr round 41 (radius: 20)
[08:30:08 -210236.782577] SLOW spr round 42 (radius: 25)
[08:41:59 -210236.782577] Model parameter optimization (eps = 0.100000)

[08:42:36] [worker #0] ML tree search #6, logLikelihood: -210235.688113

[08:42:36 -489803.705086] Initial branch length optimization
[08:42:41 -429886.751780] Model parameter optimization (eps = 10.000000)
[08:43:40 -429160.989024] AUTODETECT spr round 1 (radius: 5)
[08:47:17 -325120.652677] AUTODETECT spr round 2 (radius: 10)
[08:51:29 -260406.995743] AUTODETECT spr round 3 (radius: 15)
[08:56:10 -233362.078693] AUTODETECT spr round 4 (radius: 20)
[09:01:32 -227417.032400] AUTODETECT spr round 5 (radius: 25)
[09:08:53 -226407.744783] SPR radius for FAST iterations: 25 (autodetect)
[09:08:53 -226407.744783] Model parameter optimization (eps = 3.000000)
[09:09:38 -226174.036634] FAST spr round 1 (radius: 25)
[09:11:17] [worker #2] ML tree search #8, logLikelihood: -210237.054833
[09:20:30 -212730.207147] FAST spr round 2 (radius: 25)
[09:27:29 -212106.329458] FAST spr round 3 (radius: 25)
[09:27:32] [worker #3] ML tree search #9, logLikelihood: -210159.876809
[09:33:14 -211991.546751] FAST spr round 4 (radius: 25)
[09:38:07 -211911.085827] FAST spr round 5 (radius: 25)
[09:41:41 -211865.516617] FAST spr round 6 (radius: 25)
[09:44:56 -211333.034962] FAST spr round 7 (radius: 25)
[09:48:11 -211300.807825] FAST spr round 8 (radius: 25)
[09:51:14 -211287.581753] FAST spr round 9 (radius: 25)
[09:53:59 -211287.295683] FAST spr round 10 (radius: 25)
[09:56:42 -211287.295603] Model parameter optimization (eps = 1.000000)
[09:57:03 -211281.534836] SLOW spr round 1 (radius: 5)
[10:00:56 -211170.000906] SLOW spr round 2 (radius: 5)
[10:04:48 -211153.623799] SLOW spr round 3 (radius: 5)
[10:08:31 -211150.343585] SLOW spr round 4 (radius: 5)
[10:12:09 -211150.340428] SLOW spr round 5 (radius: 10)
[10:16:07 -211126.341431] SLOW spr round 6 (radius: 5)
[10:20:43 -211113.957337] SLOW spr round 7 (radius: 5)
[10:25:00 -211105.751094] SLOW spr round 8 (radius: 5)
[10:28:52 -211104.881754] SLOW spr round 9 (radius: 5)
[10:32:32 -211104.881565] SLOW spr round 10 (radius: 10)
[10:36:34 -211085.830357] SLOW spr round 11 (radius: 5)
[10:41:04 -211078.512569] SLOW spr round 12 (radius: 5)
[10:45:02 -211078.511561] SLOW spr round 13 (radius: 10)
[10:49:05 -211078.511488] SLOW spr round 14 (radius: 15)
[10:56:03 -211048.900264] SLOW spr round 15 (radius: 5)
[10:59:21] [worker #4] ML tree search #15, logLikelihood: -210681.237218
[11:00:38 -211041.102827] SLOW spr round 16 (radius: 5)
[11:04:48 -211040.219156] SLOW spr round 17 (radius: 5)
[11:08:36 -211040.218505] SLOW spr round 18 (radius: 10)
[11:12:31 -211036.059172] SLOW spr round 19 (radius: 5)
[11:17:02 -211023.849933] SLOW spr round 20 (radius: 5)
[11:21:01 -211023.183639] SLOW spr round 21 (radius: 5)
[11:24:46 -211023.183114] SLOW spr round 22 (radius: 10)
[11:28:40 -211020.376241] SLOW spr round 23 (radius: 5)
[11:33:06 -211015.379611] SLOW spr round 24 (radius: 5)
[11:37:03 -211015.379281] SLOW spr round 25 (radius: 10)
[11:41:01 -211015.379186] SLOW spr round 26 (radius: 15)
[11:47:49 -211003.108715] SLOW spr round 27 (radius: 5)
[11:52:21 -211000.349815] SLOW spr round 28 (radius: 5)
[11:56:25 -210998.872779] SLOW spr round 29 (radius: 5)
[12:00:14 -210998.188914] SLOW spr round 30 (radius: 5)
[12:03:54 -210998.188901] SLOW spr round 31 (radius: 10)
[12:07:43 -210997.379678] SLOW spr round 32 (radius: 5)
[12:08:40] [worker #1] ML tree search #7, logLikelihood: -210772.994361
[12:12:05 -210996.942942] SLOW spr round 33 (radius: 5)
[12:16:04 -210996.942272] SLOW spr round 34 (radius: 10)
[12:20:05 -210996.942241] SLOW spr round 35 (radius: 15)
[12:21:36] [worker #3] ML tree search #14, logLikelihood: -211949.184753
[12:26:35 -210996.942240] SLOW spr round 36 (radius: 20)
[12:36:16 -210947.248151] SLOW spr round 37 (radius: 5)
[12:41:11 -210866.930475] SLOW spr round 38 (radius: 5)
[12:45:35 -210825.801210] SLOW spr round 39 (radius: 5)
[12:49:31 -210821.457615] SLOW spr round 40 (radius: 5)
[12:53:12 -210820.686550] SLOW spr round 41 (radius: 5)
[12:56:48 -210820.683525] SLOW spr round 42 (radius: 10)
[13:00:30 -210820.683147] SLOW spr round 43 (radius: 15)
[13:07:19 -210810.762371] SLOW spr round 44 (radius: 5)
[13:12:01 -210802.242988] SLOW spr round 45 (radius: 5)
[13:16:05 -210802.241428] SLOW spr round 46 (radius: 10)
[13:20:10 -210794.908400] SLOW spr round 47 (radius: 5)
[13:24:27 -210793.717384] SLOW spr round 48 (radius: 5)
[13:28:22 -210793.717296] SLOW spr round 49 (radius: 10)
[13:32:17 -210793.717292] SLOW spr round 50 (radius: 15)
[13:38:42 -210789.390947] SLOW spr round 51 (radius: 5)
[13:43:10 -210788.213438] SLOW spr round 52 (radius: 5)
[13:47:10 -210788.208962] SLOW spr round 53 (radius: 10)
[13:51:11 -210788.208655] SLOW spr round 54 (radius: 15)
[13:57:32 -210788.208635] SLOW spr round 55 (radius: 20)
[14:00:31] [worker #2] ML tree search #13, logLikelihood: -210053.643838
[14:06:45 -210788.208633] SLOW spr round 56 (radius: 25)
[14:17:12 -210788.208633] Model parameter optimization (eps = 0.100000)

[14:17:26] [worker #0] ML tree search #11, logLikelihood: -210787.984452

[14:17:26 -486118.498368] Initial branch length optimization
[14:17:34 -426607.166998] Model parameter optimization (eps = 10.000000)
[14:18:26 -426107.066556] AUTODETECT spr round 1 (radius: 5)
[14:21:59 -327645.477984] AUTODETECT spr round 2 (radius: 10)
[14:25:53 -264366.597392] AUTODETECT spr round 3 (radius: 15)
[14:30:17 -236328.764030] AUTODETECT spr round 4 (radius: 20)
[14:35:23 -226479.248072] AUTODETECT spr round 5 (radius: 25)
[14:38:13] [worker #1] ML tree search #12, logLikelihood: -212532.351358
[14:42:09 -223362.380895] SPR radius for FAST iterations: 25 (autodetect)
[14:42:09 -223362.380895] Model parameter optimization (eps = 3.000000)
[14:42:43 -223166.885946] FAST spr round 1 (radius: 25)
[14:50:25 -211360.489229] FAST spr round 2 (radius: 25)
[14:56:02 -210394.325670] FAST spr round 3 (radius: 25)
[14:59:37] [worker #3] ML tree search #19, logLikelihood: -212176.400353
[15:00:32 -210244.442996] FAST spr round 4 (radius: 25)
[15:04:17 -210220.540645] FAST spr round 5 (radius: 25)
[15:07:35 -210212.351503] FAST spr round 6 (radius: 25)
[15:10:34 -210207.056414] FAST spr round 7 (radius: 25)
[15:13:28 -210201.933164] FAST spr round 8 (radius: 25)
[15:16:15 -210198.986306] FAST spr round 9 (radius: 25)
[15:18:51 -210198.986208] Model parameter optimization (eps = 1.000000)
[15:19:02 -210198.042769] SLOW spr round 1 (radius: 5)
[15:22:52 -210131.795734] SLOW spr round 2 (radius: 5)
[15:26:37 -210113.901674] SLOW spr round 3 (radius: 5)
[15:30:10 -210109.522780] SLOW spr round 4 (radius: 5)
[15:33:36 -210109.521417] SLOW spr round 5 (radius: 10)
[15:37:31 -210086.589039] SLOW spr round 6 (radius: 5)
[15:41:58 -210061.099847] SLOW spr round 7 (radius: 5)
[15:46:04 -210045.842113] SLOW spr round 8 (radius: 5)
[15:49:47 -210042.762239] SLOW spr round 9 (radius: 5)
[15:53:16 -210042.695924] SLOW spr round 10 (radius: 10)
[15:56:53 -210036.624386] SLOW spr round 11 (radius: 5)
[15:57:39] [worker #4] ML tree search #20, logLikelihood: -210195.595441
[16:01:04 -210036.623169] SLOW spr round 12 (radius: 10)
[16:05:19 -210034.836985] SLOW spr round 13 (radius: 5)
[16:09:35 -210032.116213] SLOW spr round 14 (radius: 5)
[16:13:22 -210032.053191] SLOW spr round 15 (radius: 10)
[16:17:06 -210032.053124] SLOW spr round 16 (radius: 15)
[16:23:52 -210027.443641] SLOW spr round 17 (radius: 5)
[16:28:47 -210024.481096] SLOW spr round 18 (radius: 5)
[16:33:27 -210023.261185] SLOW spr round 19 (radius: 5)
[16:37:43 -210023.260890] SLOW spr round 20 (radius: 10)
[16:42:01 -210021.256711] SLOW spr round 21 (radius: 5)
[16:46:54 -210021.255593] SLOW spr round 22 (radius: 10)
[16:51:49 -210021.255553] SLOW spr round 23 (radius: 15)
[16:59:03 -210021.255551] SLOW spr round 24 (radius: 20)
[17:10:34 -210020.952247] SLOW spr round 25 (radius: 5)
[17:10:46] [worker #1] ML tree search #17, logLikelihood: -210555.278223
[17:15:39 -210020.952223] SLOW spr round 26 (radius: 10)
[17:20:58 -210020.952223] SLOW spr round 27 (radius: 15)
[17:27:32 -210020.952223] SLOW spr round 28 (radius: 20)
[17:32:58] [worker #2] ML tree search #18, logLikelihood: -210506.882712
[17:38:14 -210020.952223] SLOW spr round 29 (radius: 25)
[17:51:26 -210017.573473] SLOW spr round 30 (radius: 5)
[17:56:40 -210011.097607] SLOW spr round 31 (radius: 5)
[18:00:36 -210011.097372] SLOW spr round 32 (radius: 10)
[18:04:28 -210011.097357] SLOW spr round 33 (radius: 15)
[18:10:43 -210011.097355] SLOW spr round 34 (radius: 20)
[18:20:19 -210011.097355] SLOW spr round 35 (radius: 25)
[18:31:29 -210011.097355] Model parameter optimization (eps = 0.100000)

[18:31:56] [worker #0] ML tree search #16, logLikelihood: -210010.779864


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.198052,0.291073) (0.098377,0.550539) (0.398759,0.902230) (0.304812,1.733590) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -210010.779864

AIC score: 424031.559727 / AICc score: 8468091.559727 / BIC score: 431555.467868
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=315).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9HC78/3_mltree/Q9HC78.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9HC78/3_mltree/Q9HC78.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9HC78/3_mltree/Q9HC78.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9HC78/3_mltree/Q9HC78.raxml.log

Analysis started: 02-Jul-2021 17:58:05 / finished: 03-Jul-2021 12:30:02

Elapsed time: 66716.818 seconds

Consumed energy: 5567.981 Wh (= 28 km in an electric car, or 139 km with an e-scooter!)