RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 17-Jun-2021 23:40:27 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q9HC21/2_msa/Q9HC21_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q9HC21/3_mltree/Q9HC21 --seed 2 --threads 6 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (6 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q9HC21/2_msa/Q9HC21_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 367 sites

WARNING: Sequences sp_Q1E7P0_TPC1_COCIM_246410 and tr_A0A0J6Y2Z1_A0A0J6Y2Z1_COCIT_404692 are exactly identical!
WARNING: Sequences tr_B6QJZ7_B6QJZ7_TALMQ_441960 and tr_A0A093XN65_A0A093XN65_TALMA_1077442 are exactly identical!
WARNING: Sequences tr_B2WCC8_B2WCC8_PYRTR_426418 and tr_A0A2W1GF81_A0A2W1GF81_9PLEO_45151 are exactly identical!
WARNING: Sequences tr_G2HIB0_G2HIB0_PANTR_9598 and tr_A0A2R9BB71_A0A2R9BB71_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F9F728_F9F728_FUSOF_660025 and tr_X0C6N5_X0C6N5_FUSOX_1089458 are exactly identical!
WARNING: Sequences tr_F9F728_F9F728_FUSOF_660025 and tr_A0A2H3STI4_A0A2H3STI4_FUSOX_5507 are exactly identical!
WARNING: Sequences tr_C6HR49_C6HR49_AJECH_544712 and tr_F0U6N4_F0U6N4_AJEC8_544711 are exactly identical!
WARNING: Sequences sp_Q2UCW8_TPC1_ASPOR_510516 and tr_A0A1S9DQ07_A0A1S9DQ07_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_A0A0E0FG29_A0A0E0FG29_ORYNI_4536 and tr_B8AD76_B8AD76_ORYSI_39946 are exactly identical!
WARNING: Sequences tr_A0A0E0FG29_A0A0E0FG29_ORYNI_4536 and tr_I1NK47_I1NK47_ORYGL_4538 are exactly identical!
WARNING: Sequences tr_A0A0E0FG29_A0A0E0FG29_ORYNI_4536 and tr_A0A0D3EJG7_A0A0D3EJG7_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_A0A0E0FG29_A0A0E0FG29_ORYNI_4536 and tr_A0A0D9Y341_A0A0D9Y341_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_A0A0E0FG29_A0A0E0FG29_ORYNI_4536 and tr_Q0JQR9_Q0JQR9_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_A0A0E0GTC9_A0A0E0GTC9_ORYNI_4536 and tr_A0A0E0DV03_A0A0E0DV03_9ORYZ_40149 are exactly identical!
WARNING: Sequences tr_A0A0E0GTC9_A0A0E0GTC9_ORYNI_4536 and tr_A0A0E0PRU9_A0A0E0PRU9_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A0A0E0GTC9_A0A0E0GTC9_ORYNI_4536 and tr_A0A0D3GBD6_A0A0D3GBD6_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_A0A0E0GTC9_A0A0E0GTC9_ORYNI_4536 and tr_A0A0E0A3E8_A0A0E0A3E8_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_A0A0E0GTC9_A0A0E0GTC9_ORYNI_4536 and tr_Q6I583_Q6I583_ORYSJ_39947 are exactly identical!
WARNING: Sequences sp_A2R5A0_TPC1_ASPNC_425011 and tr_G3XY14_G3XY14_ASPNA_380704 are exactly identical!
WARNING: Sequences sp_A2R5A0_TPC1_ASPNC_425011 and tr_A0A319B9J5_A0A319B9J5_9EURO_1450533 are exactly identical!
WARNING: Sequences tr_G7NGP5_G7NGP5_MACMU_9544 and tr_G7PST1_G7PST1_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G7XU81_G7XU81_ASPKW_1033177 and tr_A0A146FWU2_A0A146FWU2_9EURO_1069201 are exactly identical!
WARNING: Sequences tr_B8A8T3_B8A8T3_ORYSI_39946 and tr_I1NUY8_I1NUY8_ORYGL_4538 are exactly identical!
WARNING: Sequences tr_B8A8T3_B8A8T3_ORYSI_39946 and tr_Q5JMQ9_Q5JMQ9_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_G2Y442_G2Y442_BOTF4_999810 and tr_M7U402_M7U402_BOTF1_1290391 are exactly identical!
WARNING: Sequences tr_M4C748_M4C748_BRARP_51351 and tr_A0A078F3Y6_A0A078F3Y6_BRANA_3708 are exactly identical!
WARNING: Sequences tr_W2QT24_W2QT24_PHYPN_761204 and tr_W2K1H8_W2K1H8_PHYPR_4792 are exactly identical!
WARNING: Sequences tr_A0A015JWW4_A0A015JWW4_9GLOM_1432141 and tr_A0A2H5S105_A0A2H5S105_RHIID_747089 are exactly identical!
WARNING: Sequences tr_A0A067F386_A0A067F386_CITSI_2711 and tr_V4S4W4_V4S4W4_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_A0A078J5H0_A0A078J5H0_BRANA_3708 and tr_A0A0D3B5H8_A0A0D3B5H8_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_A0A0D2PNC9_A0A0D2PNC9_GOSRA_29730 and tr_A0A1U8JQP6_A0A1U8JQP6_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0F8X1T3_A0A0F8X1T3_9EURO_308745 and tr_A0A2T5LUQ0_A0A2T5LUQ0_9EURO_1392256 are exactly identical!
WARNING: Sequences tr_A0A0A1NZS7_A0A0A1NZS7_9FUNG_58291 and tr_A0A367JHP5_A0A367JHP5_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A0A1P1U6_A0A0A1P1U6_9FUNG_58291 and tr_A0A0A1P896_A0A0A1P896_9FUNG_58291 are exactly identical!
WARNING: Sequences tr_A0A0V1CMG4_A0A0V1CMG4_TRIBR_45882 and tr_A0A0V1PPI8_A0A0V1PPI8_9BILA_92180 are exactly identical!
WARNING: Sequences tr_A0A0V1CMG4_A0A0V1CMG4_TRIBR_45882 and tr_A0A0V0TVF8_A0A0V0TVF8_9BILA_144512 are exactly identical!
WARNING: Sequences tr_A0A161Y597_A0A161Y597_9PEZI_708197 and tr_A0A162N420_A0A162N420_9PEZI_1573173 are exactly identical!
WARNING: Sequences tr_A0A1S3YVM2_A0A1S3YVM2_TOBAC_4097 and tr_A0A1U7XUH5_A0A1U7XUH5_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S4C8C6_A0A1S4C8C6_TOBAC_4097 and tr_A0A1U7VLU8_A0A1U7VLU8_NICSY_4096 are exactly identical!
WARNING: Duplicate sequences found: 39

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q9HC21/3_mltree/Q9HC21.raxml.reduced.phy

Alignment comprises 1 partitions and 367 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 367 / 367
Gaps: 16.21 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q9HC21/3_mltree/Q9HC21.raxml.rba

Parallelization scheme autoconfig: 6 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 367 / 29360
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -613967.559739] Initial branch length optimization
[00:00:14 -518249.940480] Model parameter optimization (eps = 10.000000)
[00:01:48 -516082.232220] AUTODETECT spr round 1 (radius: 5)
[00:06:52 -372360.293288] AUTODETECT spr round 2 (radius: 10)
[00:13:10 -284232.056541] AUTODETECT spr round 3 (radius: 15)
[00:19:14 -237442.401909] AUTODETECT spr round 4 (radius: 20)
[00:29:54 -219334.176120] AUTODETECT spr round 5 (radius: 25)
[00:38:14 -212978.263394] SPR radius for FAST iterations: 25 (autodetect)
[00:38:14 -212978.263394] Model parameter optimization (eps = 3.000000)
[00:38:59 -212545.766046] FAST spr round 1 (radius: 25)
[00:47:19 -185616.832914] FAST spr round 2 (radius: 25)
[00:52:43 -184479.250277] FAST spr round 3 (radius: 25)
[00:56:26 -184426.337814] FAST spr round 4 (radius: 25)
[00:59:48 -184413.437880] FAST spr round 5 (radius: 25)
[01:02:49 -184412.173601] FAST spr round 6 (radius: 25)
[01:05:44 -184412.173594] Model parameter optimization (eps = 1.000000)
[01:06:01 -184410.472371] SLOW spr round 1 (radius: 5)
[01:10:50 -184332.007484] SLOW spr round 2 (radius: 5)
[01:18:50 -184328.556382] SLOW spr round 3 (radius: 5)
[01:24:41 -184327.813684] SLOW spr round 4 (radius: 5)
[01:32:15 -184327.813664] SLOW spr round 5 (radius: 10)
[01:36:54 -184322.661904] SLOW spr round 6 (radius: 5)
[01:47:39 -184322.382633] SLOW spr round 7 (radius: 5)
[01:56:40 -184322.382487] SLOW spr round 8 (radius: 10)
[02:01:11 -184322.382485] SLOW spr round 9 (radius: 15)
[02:15:24] [worker #2] ML tree search #3, logLikelihood: -184325.936506
[02:16:16 -184318.102178] SLOW spr round 10 (radius: 5)
[02:25:21 -184303.615900] SLOW spr round 11 (radius: 5)
[02:30:07] [worker #3] ML tree search #4, logLikelihood: -184276.962610
[02:34:43 -184299.126408] SLOW spr round 12 (radius: 5)
[02:37:28] [worker #1] ML tree search #2, logLikelihood: -184299.010677
[02:39:07 -184299.126278] SLOW spr round 13 (radius: 10)
[02:43:30 -184299.126275] SLOW spr round 14 (radius: 15)
[02:52:41 -184283.825151] SLOW spr round 15 (radius: 5)
[02:59:34] [worker #5] ML tree search #6, logLikelihood: -184282.173261
[03:00:16 -184283.683283] SLOW spr round 16 (radius: 5)
[03:09:40 -184283.683256] SLOW spr round 17 (radius: 10)
[03:18:46 -184283.683256] SLOW spr round 18 (radius: 15)
[03:29:13] [worker #4] ML tree search #5, logLikelihood: -184301.262287
[03:35:58 -184283.683256] SLOW spr round 19 (radius: 20)
[04:06:49 -184283.683256] SLOW spr round 20 (radius: 25)
[04:23:59 -184283.683256] Model parameter optimization (eps = 0.100000)

[04:24:32] [worker #0] ML tree search #1, logLikelihood: -184282.912992

[04:24:33 -610709.984053] Initial branch length optimization
[04:24:55 -516248.256846] Model parameter optimization (eps = 10.000000)
[04:29:59 -513974.114803] AUTODETECT spr round 1 (radius: 5)
[04:36:40 -374077.792313] AUTODETECT spr round 2 (radius: 10)
[04:44:45 -301660.595077] AUTODETECT spr round 3 (radius: 15)
[04:51:25] [worker #5] ML tree search #12, logLikelihood: -184299.731292
[04:54:30 -257887.877690] AUTODETECT spr round 4 (radius: 20)
[05:03:43] [worker #3] ML tree search #10, logLikelihood: -184292.717285
[05:04:14 -229601.274267] AUTODETECT spr round 5 (radius: 25)
[05:15:28 -222340.292292] SPR radius for FAST iterations: 25 (autodetect)
[05:15:28 -222340.292292] Model parameter optimization (eps = 3.000000)
[05:16:31 -221850.743818] FAST spr round 1 (radius: 25)
[05:17:46] [worker #1] ML tree search #8, logLikelihood: -184301.083404
[05:23:35 -185799.320457] FAST spr round 2 (radius: 25)
[05:28:13 -184494.357332] FAST spr round 3 (radius: 25)
[05:34:35 -184418.063066] FAST spr round 4 (radius: 25)
[05:42:20 -184404.169852] FAST spr round 5 (radius: 25)
[05:50:12 -184403.445252] FAST spr round 6 (radius: 25)
[05:54:32 -184403.445224] Model parameter optimization (eps = 1.000000)
[05:55:43 -184390.477816] SLOW spr round 1 (radius: 5)
[06:05:36 -184350.921010] SLOW spr round 2 (radius: 5)
[06:14:43 -184340.630685] SLOW spr round 3 (radius: 5)
[06:24:33 -184339.230236] SLOW spr round 4 (radius: 5)
[06:26:08] [worker #4] ML tree search #11, logLikelihood: -184289.770037
[06:30:49 -184339.230117] SLOW spr round 5 (radius: 10)
[06:39:26 -184338.432193] SLOW spr round 6 (radius: 5)
[06:52:51 -184333.143267] SLOW spr round 7 (radius: 5)
[06:58:41 -184333.143135] SLOW spr round 8 (radius: 10)
[07:03:17 -184332.598659] SLOW spr round 9 (radius: 5)
[07:08:23] [worker #2] ML tree search #9, logLikelihood: -184278.377665
[07:12:43 -184319.680892] SLOW spr round 10 (radius: 5)
[07:18:35 -184319.680103] SLOW spr round 11 (radius: 10)
[07:23:06 -184319.680010] SLOW spr round 12 (radius: 15)
[07:30:41 -184319.679987] SLOW spr round 13 (radius: 20)
[07:42:15 -184319.679980] SLOW spr round 14 (radius: 25)
[07:50:31] [worker #3] ML tree search #16, logLikelihood: -184322.380689
[07:56:44 -184319.679978] Model parameter optimization (eps = 0.100000)

[07:57:06] [worker #0] ML tree search #7, logLikelihood: -184318.694014

[07:57:06 -616204.491762] Initial branch length optimization
[07:57:21 -520678.500158] Model parameter optimization (eps = 10.000000)
[07:58:57 -518190.230043] AUTODETECT spr round 1 (radius: 5)
[08:01:58] [worker #5] ML tree search #18, logLikelihood: -184316.270564
[08:04:02 -364250.651710] AUTODETECT spr round 2 (radius: 10)
[08:09:46 -269221.414974] AUTODETECT spr round 3 (radius: 15)
[08:15:29 -230833.357840] AUTODETECT spr round 4 (radius: 20)
[08:18:16] [worker #1] ML tree search #14, logLikelihood: -184286.168160
[08:22:03 -214341.012592] AUTODETECT spr round 5 (radius: 25)
[08:29:40 -210177.130803] SPR radius for FAST iterations: 25 (autodetect)
[08:29:40 -210177.130803] Model parameter optimization (eps = 3.000000)
[08:30:29 -209742.732127] FAST spr round 1 (radius: 25)
[08:37:03 -185431.249878] FAST spr round 2 (radius: 25)
[08:41:28 -184504.373279] FAST spr round 3 (radius: 25)
[08:45:16 -184439.519206] FAST spr round 4 (radius: 25)
[08:48:40 -184422.249815] FAST spr round 5 (radius: 25)
[08:51:40 -184422.249763] Model parameter optimization (eps = 1.000000)
[08:52:11 -184412.187677] SLOW spr round 1 (radius: 5)
[08:57:18 -184331.454041] SLOW spr round 2 (radius: 5)
[09:01:57 -184309.117284] SLOW spr round 3 (radius: 5)
[09:06:09 -184307.346583] SLOW spr round 4 (radius: 5)
[09:10:13 -184307.346531] SLOW spr round 5 (radius: 10)
[09:14:30 -184307.346528] SLOW spr round 6 (radius: 15)
[09:17:32] [worker #4] ML tree search #17, logLikelihood: -184320.201804
[09:17:56] [worker #2] ML tree search #15, logLikelihood: -184277.612936
[09:22:46 -184307.346528] SLOW spr round 7 (radius: 20)
[09:34:54 -184307.346528] SLOW spr round 8 (radius: 25)
[09:51:13 -184307.346528] Model parameter optimization (eps = 0.100000)

[09:51:30] [worker #0] ML tree search #13, logLikelihood: -184307.102644

[09:51:30 -618994.567072] Initial branch length optimization
[09:51:44 -524600.027955] Model parameter optimization (eps = 10.000000)
[09:53:49 -522235.426215] AUTODETECT spr round 1 (radius: 5)
[09:58:57 -378378.855902] AUTODETECT spr round 2 (radius: 10)
[10:04:32 -272063.977102] AUTODETECT spr round 3 (radius: 15)
[10:10:36 -223720.448920] AUTODETECT spr round 4 (radius: 20)
[10:17:03 -208659.773068] AUTODETECT spr round 5 (radius: 25)
[10:24:25 -205943.526159] SPR radius for FAST iterations: 25 (autodetect)
[10:24:25 -205943.526159] Model parameter optimization (eps = 3.000000)
[10:25:16 -205592.930302] FAST spr round 1 (radius: 25)
[10:27:25] [worker #1] ML tree search #20, logLikelihood: -184302.063964
[10:31:29 -185120.175704] FAST spr round 2 (radius: 25)
[10:35:59 -184466.360589] FAST spr round 3 (radius: 25)
[10:39:41 -184391.868957] FAST spr round 4 (radius: 25)
[10:42:59 -184360.652830] FAST spr round 5 (radius: 25)
[10:45:55 -184359.593330] FAST spr round 6 (radius: 25)
[10:48:46 -184359.592984] Model parameter optimization (eps = 1.000000)
[10:49:12 -184342.734988] SLOW spr round 1 (radius: 5)
[10:54:01 -184284.054457] SLOW spr round 2 (radius: 5)
[10:58:11 -184284.046950] SLOW spr round 3 (radius: 10)
[11:02:25 -184283.826950] SLOW spr round 4 (radius: 5)
[11:07:49 -184283.014025] SLOW spr round 5 (radius: 5)
[11:12:26 -184283.013991] SLOW spr round 6 (radius: 10)
[11:16:45 -184283.013991] SLOW spr round 7 (radius: 15)
[11:24:13 -184283.013990] SLOW spr round 8 (radius: 20)
[11:35:33 -184283.013990] SLOW spr round 9 (radius: 25)
[11:49:54 -184282.418240] SLOW spr round 10 (radius: 5)
[11:55:40 -184282.418116] SLOW spr round 11 (radius: 10)
[12:00:58 -184282.418112] SLOW spr round 12 (radius: 15)
[12:07:54 -184282.418112] SLOW spr round 13 (radius: 20)
[12:19:42 -184282.418112] SLOW spr round 14 (radius: 25)
[12:33:52 -184282.418112] Model parameter optimization (eps = 0.100000)

[12:34:00] [worker #0] ML tree search #19, logLikelihood: -184282.328385


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.206950,0.424955) (0.321850,0.523662) (0.306683,1.285701) (0.164517,2.122651) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -184276.962610

AIC score: 372563.925220 / AICc score: 8416623.925220 / BIC score: 380394.175725
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=367).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q9HC21/3_mltree/Q9HC21.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q9HC21/3_mltree/Q9HC21.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q9HC21/3_mltree/Q9HC21.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q9HC21/3_mltree/Q9HC21.raxml.log

Analysis started: 17-Jun-2021 23:40:27 / finished: 18-Jun-2021 12:14:28

Elapsed time: 45240.904 seconds