RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 05-Jul-2021 23:12:36 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9HBL0/2_msa/Q9HBL0_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9HBL0/3_mltree/Q9HBL0 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9HBL0/2_msa/Q9HBL0_trimmed_msa.fasta [00:00:00] Loaded alignment with 913 taxa and 51 sites WARNING: Sequences tr_V7B1R7_V7B1R7_PHAVU_3885 and tr_A0A0L9U215_A0A0L9U215_PHAAN_3914 are exactly identical! WARNING: Sequences tr_V7B1R7_V7B1R7_PHAVU_3885 and tr_A0A1S3TUS3_A0A1S3TUS3_VIGRR_3916 are exactly identical! WARNING: Sequences tr_B4QWL1_B4QWL1_DROSI_7240 and tr_Q9VHC3_Q9VHC3_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QWL1_B4QWL1_DROSI_7240 and tr_B4HJY8_B4HJY8_DROSE_7238 are exactly identical! WARNING: Sequences tr_A0A2R8QQZ0_A0A2R8QQZ0_DANRE_7955 and tr_E7F355_E7F355_DANRE_7955 are exactly identical! WARNING: Sequences tr_E7FC59_E7FC59_DANRE_7955 and tr_H2LP52_H2LP52_ORYLA_8090 are exactly identical! WARNING: Sequences tr_E7FC59_E7FC59_DANRE_7955 and tr_I3KSH4_I3KSH4_ORENI_8128 are exactly identical! WARNING: Sequences tr_E7FC59_E7FC59_DANRE_7955 and tr_A0A3B1JCD4_A0A3B1JCD4_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A1D5PAT9_A0A1D5PAT9_CHICK_9031 and tr_F6REY8_F6REY8_ORNAN_9258 are exactly identical! WARNING: Sequences tr_A0A1D5PAT9_A0A1D5PAT9_CHICK_9031 and tr_F7CA71_F7CA71_MONDO_13616 are exactly identical! WARNING: Sequences tr_A0A1D5PAT9_A0A1D5PAT9_CHICK_9031 and tr_G3W2Q8_G3W2Q8_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A1D5PAT9_A0A1D5PAT9_CHICK_9031 and tr_U3JS24_U3JS24_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5PAT9_A0A1D5PAT9_CHICK_9031 and tr_A0A0Q3PH54_A0A0Q3PH54_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A1D5PAT9_A0A1D5PAT9_CHICK_9031 and tr_A0A218U8I5_A0A218U8I5_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5PMK4_A0A1D5PMK4_CHICK_9031 and sp_Q04205_TENS_CHICK_9031 are exactly identical! WARNING: Sequences tr_A0A1D5PMK4_A0A1D5PMK4_CHICK_9031 and tr_A0A1V4K657_A0A1V4K657_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1L1RSX2_A0A1L1RSX2_CHICK_9031 and tr_G1MRB4_G1MRB4_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1L1RSX2_A0A1L1RSX2_CHICK_9031 and tr_K7FV93_K7FV93_PELSI_13735 are exactly identical! WARNING: Sequences tr_A0A1L1RSX2_A0A1L1RSX2_CHICK_9031 and tr_U3IG18_U3IG18_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1L1RSX2_A0A1L1RSX2_CHICK_9031 and tr_A0A151PH48_A0A151PH48_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A1L1RSX2_A0A1L1RSX2_CHICK_9031 and tr_A0A3Q0H9P7_A0A3Q0H9P7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A1L1RSX2_A0A1L1RSX2_CHICK_9031 and tr_A0A2Y9QLV2_A0A2Y9QLV2_TRIMA_127582 are exactly identical! WARNING: Sequences tr_F1NMI2_F1NMI2_CHICK_9031 and tr_A0A0A0AG97_A0A0A0AG97_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and sp_O08586_PTEN_MOUSE_10090 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_G1RNC7_G1RNC7_NOMLE_61853 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_G3QF16_G3QF16_GORGO_9595 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_H2NAW8_H2NAW8_PONAB_9601 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_G1MS67_G1MS67_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_G1SVU9_G1SVU9_RABIT_9986 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_F1P8M8_F1P8M8_CANLF_9615 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and sp_P60483_PTEN_CANLF_9615 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A2I3TNH3_A0A2I3TNH3_PANTR_9598 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_W5PXK2_W5PXK2_SHEEP_9940 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_O54857_O54857_RAT_10116 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_I3MU41_I3MU41_ICTTR_43179 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and sp_P60484_PTEN_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_F6VBA7_F6VBA7_MACMU_9544 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_G3SVY7_G3SVY7_LOXAF_9785 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_U3F9J7_U3F9J7_CALJA_9483 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_F2Z5H1_F2Z5H1_PIG_9823 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_D2GZ33_D2GZ33_AILME_9646 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_L5JNG2_L5JNG2_PTEAL_9402 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_M3WPL8_M3WPL8_FELCA_9685 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_R0K051_R0K051_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A096P5B4_A0A096P5B4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A091CZE8_A0A091CZE8_FUKDA_885580 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A0D9R3M9_A0A0D9R3M9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A0P7USE5_A0A0P7USE5_9TELE_113540 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A0P7V0R8_A0A0P7V0R8_9TELE_113540 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A151NZY3_A0A151NZY3_ALLMI_8496 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A0Q3MGJ8_A0A0Q3MGJ8_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A093Q4K8_A0A093Q4K8_9PASS_328815 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A091V410_A0A091V410_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A087QU08_A0A087QU08_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A091W8V2_A0A091W8V2_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A099ZKX6_A0A099ZKX6_TINGU_94827 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A099ZZL0_A0A099ZZL0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A093GG33_A0A093GG33_DRYPU_118200 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A091IG12_A0A091IG12_CALAN_9244 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A1S3NES8_A0A1S3NES8_SALSA_8030 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A1U7UMJ6_A0A1U7UMJ6_TARSY_1868482 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A1U7Q4N9_A0A1U7Q4N9_MESAU_10036 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A226P7B4_A0A226P7B4_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A2K5LKR0_A0A2K5LKR0_CERAT_9531 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A2K6B6A9_A0A2K6B6A9_MACNE_9545 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A2K5ZCM7_A0A2K5ZCM7_MANLE_9568 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A2U4BLH0_A0A2U4BLH0_TURTR_9739 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A2U3WLD5_A0A2U3WLD5_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A2U3XMX7_A0A2U3XMX7_LEPWE_9713 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A2Y9D8M5_A0A2Y9D8M5_TRIMA_127582 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A2Y9J259_A0A2Y9J259_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A2Y9N7B6_A0A2Y9N7B6_DELLE_9749 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A2Y9FLR7_A0A2Y9FLR7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A384BYY7_A0A384BYY7_URSMA_29073 are exactly identical! WARNING: Sequences tr_F1NT98_F1NT98_CHICK_9031 and tr_A0A383ZVY4_A0A383ZVY4_BALAS_310752 are exactly identical! WARNING: Sequences tr_E9Q0S6_E9Q0S6_MOUSE_10090 and tr_A0A3Q0CSP0_A0A3Q0CSP0_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q5SSZ5_TENS3_MOUSE_10090 and tr_G3HXX3_G3HXX3_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q5SSZ5_TENS3_MOUSE_10090 and tr_F1LN91_F1LN91_RAT_10116 are exactly identical! WARNING: Sequences sp_Q5SSZ5_TENS3_MOUSE_10090 and tr_A0A1U8CI77_A0A1U8CI77_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_G1PLW2_G1PLW2_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_G3RFX5_G3RFX5_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_A0A2I3REB6_A0A2I3REB6_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_A0A287D508_A0A287D508_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and sp_Q63HR2_TNS2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_A0A1D5QKQ8_A0A1D5QKQ8_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_G5BIH5_G5BIH5_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_G3T3Y0_G3T3Y0_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_F6QXP2_F6QXP2_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_F1SFS5_F1SFS5_PIG_9823 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_G1M090_G1M090_AILME_9646 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_M3VUH7_M3VUH7_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_A0A096N5N6_A0A096N5N6_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_A0A0D9QZT3_A0A0D9QZT3_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_A0A1S3GGH9_A0A1S3GGH9_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_A0A3Q0E9S9_A0A3Q0E9S9_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_A0A1U7Q855_A0A1U7Q855_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_A0A2K5N6E7_A0A2K5N6E7_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_A0A2K6BRB0_A0A2K6BRB0_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_A0A2K5Z6C8_A0A2K5Z6C8_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_A0A2R9B4X9_A0A2R9B4X9_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_A0A2Y9DG84_A0A2Y9DG84_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_A0A2Y9KVS0_A0A2Y9KVS0_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_A0A2Y9MZ83_A0A2Y9MZ83_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q8CGB6_TNS2_MOUSE_10090 and tr_A0A383ZWI0_A0A383ZWI0_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0CUG9_A0CUG9_PARTE_5888 and tr_A0DS60_A0DS60_PARTE_5888 are exactly identical! WARNING: Sequences tr_M3Y486_M3Y486_MUSPF_9669 and tr_M0R671_M0R671_RAT_10116 are exactly identical! WARNING: Sequences tr_M3Y486_M3Y486_MUSPF_9669 and tr_A0A1S2ZER0_A0A1S2ZER0_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3Y486_M3Y486_MUSPF_9669 and tr_A0A2Y9SMS3_A0A2Y9SMS3_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YIQ7_M3YIQ7_MUSPF_9669 and tr_F1PGG9_F1PGG9_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YIQ7_M3YIQ7_MUSPF_9669 and tr_G5BCK3_G5BCK3_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3YIQ7_M3YIQ7_MUSPF_9669 and tr_G1MEF4_G1MEF4_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YIQ7_M3YIQ7_MUSPF_9669 and tr_M3W970_M3W970_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YIQ7_M3YIQ7_MUSPF_9669 and tr_A0A2U3VMN0_A0A2U3VMN0_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YIQ7_M3YIQ7_MUSPF_9669 and tr_A0A2Y9JL92_A0A2Y9JL92_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_G1P9F3_G1P9F3_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_A0A2I2YUW8_A0A2I2YUW8_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_E2RL77_E2RL77_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_H2QJD8_H2QJD8_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_W5QDT8_W5QDT8_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_A0A287DB26_A0A287DB26_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_H0XFI5_H0XFI5_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_A0A286XTS9_A0A286XTS9_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and sp_Q9HBL0_TENS1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_G5AZK0_G5AZK0_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_F6ZA44_F6ZA44_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_K7GSF1_K7GSF1_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_G1L9E1_G1L9E1_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_E1BNT5_E1BNT5_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_L5L0F3_L5L0F3_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_A0A2I2V1I8_A0A2I2V1I8_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_A0A2I3M562_A0A2I3M562_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_A0A091CQ40_A0A091CQ40_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_A0A0D9R9F0_A0A0D9R9F0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_A0A1S3GW83_A0A1S3GW83_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_A0A1U7UT19_A0A1U7UT19_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_A0A2K5MAS5_A0A2K5MAS5_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_A0A2K6DWN4_A0A2K6DWN4_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_A0A2K5Z1T0_A0A2K5Z1T0_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_A0A2R9CCQ4_A0A2R9CCQ4_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_A0A2U3ZI64_A0A2U3ZI64_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_A0A2U3YPG9_A0A2U3YPG9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_A0A2Y9JL55_A0A2Y9JL55_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_A0A2Y9MMY7_A0A2Y9MMY7_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_A0A2Y9EE20_A0A2Y9EE20_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YYJ2_M3YYJ2_MUSPF_9669 and tr_A0A384C1T1_A0A384C1T1_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Z3A4_M3Z3A4_MUSPF_9669 and tr_A0A2Y9KJF2_A0A2Y9KJF2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A3B3IJX9_A0A3B3IJX9_ORYLA_8090 and tr_G3NIV6_G3NIV6_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A3B3IJX9_A0A3B3IJX9_ORYLA_8090 and tr_W5ME69_W5ME69_LEPOC_7918 are exactly identical! WARNING: Sequences tr_A0A3B3IJX9_A0A3B3IJX9_ORYLA_8090 and tr_A0A1S3LKV9_A0A1S3LKV9_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A3B3IJX9_A0A3B3IJX9_ORYLA_8090 and tr_A0A2I4C5N0_A0A2I4C5N0_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A3B3IJX9_A0A3B3IJX9_ORYLA_8090 and tr_A0A2D0SI54_A0A2D0SI54_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A3B3IJX9_A0A3B3IJX9_ORYLA_8090 and tr_A0A2D0SI55_A0A2D0SI55_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A3B3IJX9_A0A3B3IJX9_ORYLA_8090 and tr_A0A2D0SI66_A0A2D0SI66_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A3B3IJX9_A0A3B3IJX9_ORYLA_8090 and tr_A0A2D0SIS0_A0A2D0SIS0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A3B3IJX9_A0A3B3IJX9_ORYLA_8090 and tr_A0A2D0SIS6_A0A2D0SIS6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A3B3IJX9_A0A3B3IJX9_ORYLA_8090 and tr_A0A2D0SJC1_A0A2D0SJC1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A3B3IJX9_A0A3B3IJX9_ORYLA_8090 and tr_A0A2U9C0H0_A0A2U9C0H0_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H2N2G7_H2N2G7_ORYLA_8090 and tr_A0A2I4CFK1_A0A2I4CFK1_9TELE_52670 are exactly identical! WARNING: Sequences tr_D8RCM2_D8RCM2_SELML_88036 and tr_D8T531_D8T531_SELML_88036 are exactly identical! WARNING: Sequences tr_G3QLN8_G3QLN8_GORGO_9595 and tr_F1PQ78_F1PQ78_CANLF_9615 are exactly identical! WARNING: Sequences tr_G3QLN8_G3QLN8_GORGO_9595 and tr_H2R126_H2R126_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QLN8_G3QLN8_GORGO_9595 and tr_F7DBQ5_F7DBQ5_HORSE_9796 are exactly identical! WARNING: Sequences tr_G3QLN8_G3QLN8_GORGO_9595 and sp_Q68CZ2_TENS3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QLN8_G3QLN8_GORGO_9595 and tr_F6T1G8_F6T1G8_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3QLN8_G3QLN8_GORGO_9595 and tr_A0A2R8PAP2_A0A2R8PAP2_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3QLN8_G3QLN8_GORGO_9595 and tr_G1M894_G1M894_AILME_9646 are exactly identical! WARNING: Sequences tr_G3QLN8_G3QLN8_GORGO_9595 and tr_M3W879_M3W879_FELCA_9685 are exactly identical! WARNING: Sequences tr_G3QLN8_G3QLN8_GORGO_9595 and tr_A0A0D9RTC1_A0A0D9RTC1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3QLN8_G3QLN8_GORGO_9595 and tr_A0A2K5MYD3_A0A2K5MYD3_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QLN8_G3QLN8_GORGO_9595 and tr_A0A2K6DGZ1_A0A2K6DGZ1_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3QLN8_G3QLN8_GORGO_9595 and tr_A0A2K5XUQ5_A0A2K5XUQ5_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QLN8_G3QLN8_GORGO_9595 and tr_A0A2U3W185_A0A2U3W185_ODORO_9708 are exactly identical! WARNING: Sequences tr_G3R2K7_G3R2K7_GORGO_9595 and tr_K7BYE2_K7BYE2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R2K7_G3R2K7_GORGO_9595 and sp_Q8IZW8_TENS4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R2K7_G3R2K7_GORGO_9595 and tr_A0A2R8ZYL3_A0A2R8ZYL3_PANPA_9597 are exactly identical! WARNING: Sequences tr_B5DYC5_B5DYC5_DROPS_46245 and tr_B4GFJ3_B4GFJ3_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A2I3TVJ9_A0A2I3TVJ9_PANTR_9598 and tr_A0A2R9C452_A0A2R9C452_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6U920_F6U920_HORSE_9796 and tr_A0A384AKT6_A0A384AKT6_BALAS_310752 are exactly identical! WARNING: Sequences tr_F7BIK2_F7BIK2_HORSE_9796 and tr_A0A091CTJ8_A0A091CTJ8_FUKDA_885580 are exactly identical! WARNING: Sequences tr_W5PSK5_W5PSK5_SHEEP_9940 and tr_F1ST78_F1ST78_PIG_9823 are exactly identical! WARNING: Sequences tr_W5PSK5_W5PSK5_SHEEP_9940 and tr_E1BFE8_E1BFE8_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PSK5_W5PSK5_SHEEP_9940 and tr_A0A2Y9PZW8_A0A2Y9PZW8_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5PSK5_W5PSK5_SHEEP_9940 and tr_A0A2Y9RX11_A0A2Y9RX11_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5PSK5_W5PSK5_SHEEP_9940 and tr_A0A384AK59_A0A384AK59_BALAS_310752 are exactly identical! WARNING: Sequences tr_W5Q5J2_W5Q5J2_SHEEP_9940 and tr_E1BGX7_E1BGX7_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A3B5QCR3_A0A3B5QCR3_XIPMA_8083 and tr_A0A087XGN7_A0A087XGN7_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QU87_A0A3B5QU87_XIPMA_8083 and tr_I3JRG3_I3JRG3_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B5QU87_A0A3B5QU87_XIPMA_8083 and tr_A0A087XIA7_A0A087XIA7_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4A4C3_M4A4C3_XIPMA_8083 and tr_I3JJL2_I3JJL2_ORENI_8128 are exactly identical! WARNING: Sequences tr_M4A4C3_M4A4C3_XIPMA_8083 and tr_A0A087Y8X9_A0A087Y8X9_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4A4C3_M4A4C3_XIPMA_8083 and tr_A0A2I4C8M1_A0A2I4C8M1_9TELE_52670 are exactly identical! WARNING: Sequences tr_M4AEU0_M4AEU0_XIPMA_8083 and tr_A0A087YCR2_A0A087YCR2_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AR09_M4AR09_XIPMA_8083 and tr_A0A087X466_A0A087X466_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AR09_M4AR09_XIPMA_8083 and tr_A0A2U9BJ45_A0A2U9BJ45_SCOMX_52904 are exactly identical! WARNING: Sequences tr_K4BEQ2_K4BEQ2_SOLLC_4081 and tr_M1C488_M1C488_SOLTU_4113 are exactly identical! WARNING: Sequences tr_A0A158NCZ8_A0A158NCZ8_ATTCE_12957 and tr_E2C9V9_E2C9V9_HARSA_610380 are exactly identical! WARNING: Sequences tr_A0A158NCZ8_A0A158NCZ8_ATTCE_12957 and tr_A0A151WYM1_A0A151WYM1_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NCZ8_A0A158NCZ8_ATTCE_12957 and tr_A0A195D8M1_A0A195D8M1_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NCZ8_A0A158NCZ8_ATTCE_12957 and tr_A0A195F7E6_A0A195F7E6_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NCZ8_A0A158NCZ8_ATTCE_12957 and tr_A0A195D0J3_A0A195D0J3_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A158NH16_A0A158NH16_ATTCE_12957 and tr_A0A151J1Z4_A0A151J1Z4_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NH16_A0A158NH16_ATTCE_12957 and tr_A0A195B6F6_A0A195B6F6_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NH16_A0A158NH16_ATTCE_12957 and tr_A0A195D1D6_A0A195D1D6_9HYME_456900 are exactly identical! WARNING: Sequences tr_H0X9S8_H0X9S8_OTOGA_30611 and tr_A0A1U7U5W9_A0A1U7U5W9_TARSY_1868482 are exactly identical! WARNING: Sequences tr_H0XQZ6_H0XQZ6_OTOGA_30611 and tr_K7FNZ3_K7FNZ3_PELSI_13735 are exactly identical! WARNING: Sequences tr_H0XQZ6_H0XQZ6_OTOGA_30611 and tr_F1MDX9_F1MDX9_BOVIN_9913 are exactly identical! WARNING: Sequences tr_H0XQZ6_H0XQZ6_OTOGA_30611 and tr_A0A2I0LX60_A0A2I0LX60_COLLI_8932 are exactly identical! WARNING: Sequences tr_H2S7Z1_H2S7Z1_TAKRU_31033 and tr_H3BZQ3_H3BZQ3_TETNG_99883 are exactly identical! WARNING: Sequences tr_H2TY37_H2TY37_TAKRU_31033 and tr_G3NZ24_G3NZ24_GASAC_69293 are exactly identical! WARNING: Sequences sp_Q9LT75_PTN2A_ARATH_3702 and tr_D7L9Z1_D7L9Z1_ARALL_81972 are exactly identical! WARNING: Sequences sp_Q9LT75_PTN2A_ARATH_3702 and tr_M4E0X3_M4E0X3_BRARP_51351 are exactly identical! WARNING: Sequences sp_Q9LT75_PTN2A_ARATH_3702 and tr_M4E0X4_M4E0X4_BRARP_51351 are exactly identical! WARNING: Sequences sp_Q9LT75_PTN2A_ARATH_3702 and tr_M4FAU4_M4FAU4_BRARP_51351 are exactly identical! WARNING: Sequences sp_Q9LT75_PTN2A_ARATH_3702 and tr_A0A078I7W4_A0A078I7W4_BRANA_3708 are exactly identical! WARNING: Sequences sp_Q9LT75_PTN2A_ARATH_3702 and tr_A0A078IM94_A0A078IM94_BRANA_3708 are exactly identical! WARNING: Sequences sp_Q9LT75_PTN2A_ARATH_3702 and tr_A0A078JE56_A0A078JE56_BRANA_3708 are exactly identical! WARNING: Sequences sp_Q9LT75_PTN2A_ARATH_3702 and tr_R0I2F8_R0I2F8_9BRAS_81985 are exactly identical! WARNING: Sequences sp_Q9LT75_PTN2A_ARATH_3702 and tr_V4NNA2_V4NNA2_EUTSA_72664 are exactly identical! WARNING: Sequences sp_Q9LT75_PTN2A_ARATH_3702 and tr_A0A0D3ACB5_A0A0D3ACB5_BRAOL_109376 are exactly identical! WARNING: Sequences sp_Q9LT75_PTN2A_ARATH_3702 and tr_A0A0D3CIG7_A0A0D3CIG7_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A0K0JDF3_A0A0K0JDF3_BRUMA_6279 and tr_A0A158PQC6_A0A158PQC6_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0K0JJN6_A0A0K0JJN6_BRUMA_6279 and tr_A0A044TDW8_A0A044TDW8_ONCVO_6282 are exactly identical! WARNING: Sequences tr_A0A0K0JJN6_A0A0K0JJN6_BRUMA_6279 and tr_A0A0N4TK56_A0A0N4TK56_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0K0JJN6_A0A0K0JJN6_BRUMA_6279 and tr_A0A183GZT3_A0A183GZT3_9BILA_387005 are exactly identical! WARNING: Sequences tr_A0A0K0JJN6_A0A0K0JJN6_BRUMA_6279 and tr_A0A182DXQ9_A0A182DXQ9_ONCOC_42157 are exactly identical! WARNING: Sequences tr_F7HEZ7_F7HEZ7_MACMU_9544 and tr_G7PUP0_G7PUP0_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7HEZ7_F7HEZ7_MACMU_9544 and tr_A0A0D9S312_A0A0D9S312_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7HEZ7_F7HEZ7_MACMU_9544 and tr_A0A2K6DH04_A0A2K6DH04_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3SLZ9_G3SLZ9_LOXAF_9785 and tr_A0A2Y9R657_A0A2Y9R657_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G3TRR6_G3TRR6_LOXAF_9785 and tr_A0A2Y9G390_A0A2Y9G390_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H0Z3J8_H0Z3J8_TAEGU_59729 and tr_A0A091ER46_A0A091ER46_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0Z3J8_H0Z3J8_TAEGU_59729 and tr_A0A093GV28_A0A093GV28_STRCA_441894 are exactly identical! WARNING: Sequences tr_H0Z3J8_H0Z3J8_TAEGU_59729 and tr_A0A218UIW4_A0A218UIW4_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1B8Y519_A0A1B8Y519_XENTR_8364 and tr_F6RYQ7_F6RYQ7_XENTR_8364 are exactly identical! WARNING: Sequences tr_A0A1B8Y519_A0A1B8Y519_XENTR_8364 and tr_A0A1L8ENR6_A0A1L8ENR6_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A1B8Y519_A0A1B8Y519_XENTR_8364 and tr_A0A1L8EVF4_A0A1L8EVF4_XENLA_8355 are exactly identical! WARNING: Sequences tr_B1H2U0_B1H2U0_XENTR_8364 and tr_A0A1L8FIH0_A0A1L8FIH0_XENLA_8355 are exactly identical! WARNING: Sequences tr_F6VAY9_F6VAY9_XENTR_8364 and tr_A0A1L8HN76_A0A1L8HN76_XENLA_8355 are exactly identical! WARNING: Sequences tr_F7BHL4_F7BHL4_XENTR_8364 and tr_A0A1L8HIK2_A0A1L8HIK2_XENLA_8355 are exactly identical! WARNING: Sequences tr_G1LZ63_G1LZ63_AILME_9646 and tr_A0A2U3ZES4_A0A2U3ZES4_ODORO_9708 are exactly identical! WARNING: Sequences tr_B3RS82_B3RS82_TRIAD_10228 and tr_A0A369SHT0_A0A369SHT0_9METZ_287889 are exactly identical! WARNING: Sequences tr_U3JMZ6_U3JMZ6_FICAL_59894 and tr_A0A218VB35_A0A218VB35_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3KFF0_U3KFF0_FICAL_59894 and tr_A0A2I0M4S6_A0A2I0M4S6_COLLI_8932 are exactly identical! WARNING: Sequences tr_U3KFF0_U3KFF0_FICAL_59894 and tr_A0A1V4JV74_A0A1V4JV74_PATFA_372326 are exactly identical! WARNING: Sequences tr_W2R251_W2R251_PHYPN_761204 and tr_A0A0W8CGE1_A0A0W8CGE1_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2R251_W2R251_PHYPN_761204 and tr_W2KLZ1_W2KLZ1_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A044S0M8_A0A044S0M8_ONCVO_6282 and tr_A0A183H9D3_A0A183H9D3_9BILA_387005 are exactly identical! WARNING: Sequences tr_A0A067GB44_A0A067GB44_CITSI_2711 and tr_V4SUR1_V4SUR1_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A096P5H3_A0A096P5H3_PAPAN_9555 and tr_A0A2K5ZSP0_A0A2K5ZSP0_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A078HJI8_A0A078HJI8_BRANA_3708 and tr_A0A0D2ZQD2_A0A0D2ZQD2_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A0D2S978_A0A0D2S978_GOSRA_29730 and tr_A0A1U8JYA5_A0A1U8JYA5_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2S978_A0A0D2S978_GOSRA_29730 and tr_A0A1U8L2Z4_A0A1U8L2Z4_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0K0FU84_A0A0K0FU84_STRVS_75913 and tr_A0A0N5BAP0_A0A0N5BAP0_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A151NJE3_A0A151NJE3_ALLMI_8496 and tr_A0A1U7SI58_A0A1U7SI58_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NP54_A0A151NP54_ALLMI_8496 and tr_A0A3Q0FMN6_A0A3Q0FMN6_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0R3QCG9_A0A0R3QCG9_9BILA_42155 and tr_A0A0R3RNL4_A0A0R3RNL4_9BILA_1147741 are exactly identical! WARNING: Sequences tr_A0A091J591_A0A091J591_EGRGA_188379 and tr_A0A1S3Q4A5_A0A1S3Q4A5_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A091VAR4_A0A091VAR4_NIPNI_128390 and tr_A0A087QGZ8_A0A087QGZ8_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A0C9LTU9_A0A0C9LTU9_9FUNG_91626 and tr_A0A162YVK8_A0A162YVK8_MUCCL_747725 are exactly identical! WARNING: Sequences tr_A0A0V0SCD0_A0A0V0SCD0_9BILA_6336 and tr_A0A0V1CFI9_A0A0V1CFI9_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0SCD0_A0A0V0SCD0_9BILA_6336 and tr_A0A0V0W2F5_A0A0V0W2F5_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0SCD0_A0A0V0SCD0_9BILA_6336 and tr_A0A0V0USZ2_A0A0V0USZ2_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0SCD0_A0A0V0SCD0_9BILA_6336 and tr_A0A0V1NZH4_A0A0V1NZH4_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0SCD0_A0A0V0SCD0_9BILA_6336 and tr_A0A0V0TRV4_A0A0V0TRV4_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A1S3ZC23_A0A1S3ZC23_TOBAC_4097 and tr_A0A1U7XBT9_A0A1U7XBT9_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3L924_A0A1S3L924_SALSA_8030 and tr_A0A060YNU7_A0A060YNU7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3LAT4_A0A1S3LAT4_SALSA_8030 and tr_A0A060W668_A0A060W668_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3N465_A0A1S3N465_SALSA_8030 and tr_A0A060W1E7_A0A060W1E7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3R433_A0A1S3R433_SALSA_8030 and tr_A0A060VWU5_A0A060VWU5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226NN31_A0A226NN31_CALSU_9009 and tr_A0A226PNI8_A0A226PNI8_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0RB61_A0A2D0RB61_ICTPU_7998 and tr_A0A2D0RCC9_A0A2D0RCC9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RZP4_A0A2D0RZP4_ICTPU_7998 and tr_A0A2D0RZQ1_A0A2D0RZQ1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RZP4_A0A2D0RZP4_ICTPU_7998 and tr_A0A2D0S185_A0A2D0S185_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4BGA0_A0A2U4BGA0_TURTR_9739 and tr_A0A2Y9N6U2_A0A2Y9N6U2_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3WCS7_A0A2U3WCS7_ODORO_9708 and tr_A0A2U3YD35_A0A2U3YD35_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2Y9LYE9_A0A2Y9LYE9_DELLE_9749 and tr_A0A2Y9F060_A0A2Y9F060_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 276 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9HBL0/3_mltree/Q9HBL0.raxml.reduced.phy Alignment comprises 1 partitions and 51 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 51 / 51 Gaps: 8.00 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9HBL0/3_mltree/Q9HBL0.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 913 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 51 / 4080 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -75040.436472] Initial branch length optimization [00:00:01 -62008.530411] Model parameter optimization (eps = 10.000000) [00:00:17 -61707.505841] AUTODETECT spr round 1 (radius: 5) [00:01:19 -42241.250342] AUTODETECT spr round 2 (radius: 10) [00:02:17 -29873.026092] AUTODETECT spr round 3 (radius: 15) [00:03:31 -24424.763160] AUTODETECT spr round 4 (radius: 20) [00:04:53 -22130.776105] AUTODETECT spr round 5 (radius: 25) [00:06:36 -21349.435400] SPR radius for FAST iterations: 25 (autodetect) [00:06:36 -21349.435400] Model parameter optimization (eps = 3.000000) [00:06:48 -21315.372897] FAST spr round 1 (radius: 25) [00:08:01 -18492.657786] FAST spr round 2 (radius: 25) [00:09:04 -18255.260796] FAST spr round 3 (radius: 25) [00:10:04 -18228.660732] FAST spr round 4 (radius: 25) [00:10:53 -18223.781032] FAST spr round 5 (radius: 25) [00:11:50 -18222.080827] FAST spr round 6 (radius: 25) [00:12:49 -18222.079358] Model parameter optimization (eps = 1.000000) [00:13:00 -18216.517325] SLOW spr round 1 (radius: 5) [00:14:02 -18211.431737] SLOW spr round 2 (radius: 5) [00:15:05 -18203.129838] SLOW spr round 3 (radius: 5) [00:16:11 -18203.041974] SLOW spr round 4 (radius: 10) [00:17:20 -18197.722691] SLOW spr round 5 (radius: 5) [00:18:34 -18197.634484] SLOW spr round 6 (radius: 10) [00:19:47 -18197.634223] SLOW spr round 7 (radius: 15) [00:21:12 -18192.325510] SLOW spr round 8 (radius: 5) [00:22:29 -18182.933504] SLOW spr round 9 (radius: 5) [00:23:38 -18180.476297] SLOW spr round 10 (radius: 5) [00:24:43 -18180.476146] SLOW spr round 11 (radius: 10) [00:25:51 -18180.476121] SLOW spr round 12 (radius: 15) [00:27:12 -18180.476117] SLOW spr round 13 (radius: 20) [00:28:53 -18176.744133] SLOW spr round 14 (radius: 5) [00:30:09 -18176.729035] SLOW spr round 15 (radius: 10) [00:31:22 -18175.688612] SLOW spr round 16 (radius: 5) [00:32:34 -18175.688158] SLOW spr round 17 (radius: 10) [00:33:43 -18175.688155] SLOW spr round 18 (radius: 15) [00:35:04 -18175.688155] SLOW spr round 19 (radius: 20) [00:36:44 -18173.981330] SLOW spr round 20 (radius: 5) [00:38:01 -18173.080236] SLOW spr round 21 (radius: 5) [00:39:11 -18173.080200] SLOW spr round 22 (radius: 10) [00:40:19 -18173.080200] SLOW spr round 23 (radius: 15) [00:41:40 -18173.080200] SLOW spr round 24 (radius: 20) [00:43:18 -18173.080200] SLOW spr round 25 (radius: 25) [00:45:17 -18172.124564] SLOW spr round 26 (radius: 5) [00:46:34 -18172.124520] SLOW spr round 27 (radius: 10) [00:47:48 -18172.124520] SLOW spr round 28 (radius: 15) [00:49:08 -18172.124520] SLOW spr round 29 (radius: 20) [00:50:47 -18172.124520] SLOW spr round 30 (radius: 25) [00:52:45 -18172.124520] Model parameter optimization (eps = 0.100000) [00:52:52] ML tree search #1, logLikelihood: -18170.428439 [00:52:52 -76353.288391] Initial branch length optimization [00:52:53 -63200.553101] Model parameter optimization (eps = 10.000000) [00:53:18 -62853.400991] AUTODETECT spr round 1 (radius: 5) [00:54:20 -43648.837030] AUTODETECT spr round 2 (radius: 10) [00:55:28 -31808.453479] AUTODETECT spr round 3 (radius: 15) [00:56:43 -25728.362881] AUTODETECT spr round 4 (radius: 20) [00:58:06 -23190.727423] AUTODETECT spr round 5 (radius: 25) [00:59:42 -21789.439550] SPR radius for FAST iterations: 25 (autodetect) [00:59:42 -21789.439550] Model parameter optimization (eps = 3.000000) [00:59:54 -21734.768506] FAST spr round 1 (radius: 25) [01:01:14 -18662.085326] FAST spr round 2 (radius: 25) [01:02:20 -18344.625969] FAST spr round 3 (radius: 25) [01:03:24 -18272.823005] FAST spr round 4 (radius: 25) [01:04:24 -18266.395163] FAST spr round 5 (radius: 25) [01:05:23 -18265.908132] FAST spr round 6 (radius: 25) [01:06:22 -18265.907819] Model parameter optimization (eps = 1.000000) [01:06:32 -18260.889979] SLOW spr round 1 (radius: 5) [01:07:35 -18254.149520] SLOW spr round 2 (radius: 5) [01:08:38 -18253.590510] SLOW spr round 3 (radius: 5) [01:09:42 -18253.589461] SLOW spr round 4 (radius: 10) [01:10:49 -18247.787852] SLOW spr round 5 (radius: 5) [01:12:02 -18246.759934] SLOW spr round 6 (radius: 5) [01:13:11 -18246.757373] SLOW spr round 7 (radius: 10) [01:14:20 -18246.756562] SLOW spr round 8 (radius: 15) [01:15:43 -18231.942888] SLOW spr round 9 (radius: 5) [01:17:00 -18218.739077] SLOW spr round 10 (radius: 5) [01:18:09 -18218.654201] SLOW spr round 11 (radius: 10) [01:19:18 -18217.273711] SLOW spr round 12 (radius: 5) [01:20:30 -18215.923511] SLOW spr round 13 (radius: 5) [01:21:40 -18212.371103] SLOW spr round 14 (radius: 5) [01:22:46 -18212.279550] SLOW spr round 15 (radius: 10) [01:23:53 -18212.279244] SLOW spr round 16 (radius: 15) [01:25:15 -18211.503079] SLOW spr round 17 (radius: 5) [01:26:29 -18211.498088] SLOW spr round 18 (radius: 10) [01:27:40 -18211.497858] SLOW spr round 19 (radius: 15) [01:29:00 -18211.497774] SLOW spr round 20 (radius: 20) [01:30:32 -18210.703427] SLOW spr round 21 (radius: 5) [01:31:50 -18210.362989] SLOW spr round 22 (radius: 5) [01:33:01 -18210.360974] SLOW spr round 23 (radius: 10) [01:34:10 -18210.280456] SLOW spr round 24 (radius: 15) [01:35:29 -18210.278702] SLOW spr round 25 (radius: 20) [01:36:59 -18208.380666] SLOW spr round 26 (radius: 5) [01:38:16 -18208.374816] SLOW spr round 27 (radius: 10) [01:39:29 -18208.374767] SLOW spr round 28 (radius: 15) [01:40:49 -18208.374739] SLOW spr round 29 (radius: 20) [01:42:20 -18208.374716] SLOW spr round 30 (radius: 25) [01:44:09 -18192.236012] SLOW spr round 31 (radius: 5) [01:45:26 -18192.185299] SLOW spr round 32 (radius: 10) [01:46:38 -18192.185214] SLOW spr round 33 (radius: 15) [01:47:58 -18192.185182] SLOW spr round 34 (radius: 20) [01:49:29 -18192.185160] SLOW spr round 35 (radius: 25) [01:51:14 -18192.185139] Model parameter optimization (eps = 0.100000) [01:51:19] ML tree search #2, logLikelihood: -18192.042278 [01:51:19 -75655.480077] Initial branch length optimization [01:51:20 -62327.698275] Model parameter optimization (eps = 10.000000) [01:51:35 -62022.738529] AUTODETECT spr round 1 (radius: 5) [01:52:38 -42576.212275] AUTODETECT spr round 2 (radius: 10) [01:53:46 -30473.069122] AUTODETECT spr round 3 (radius: 15) [01:55:01 -24543.069253] AUTODETECT spr round 4 (radius: 20) [01:56:24 -22258.723960] AUTODETECT spr round 5 (radius: 25) [01:57:58 -21271.609161] SPR radius for FAST iterations: 25 (autodetect) [01:57:58 -21271.609161] Model parameter optimization (eps = 3.000000) [01:58:13 -21214.721794] FAST spr round 1 (radius: 25) [01:59:31 -18507.209546] FAST spr round 2 (radius: 25) [02:00:39 -18299.446350] FAST spr round 3 (radius: 25) [02:01:42 -18215.806220] FAST spr round 4 (radius: 25) [02:02:41 -18205.982696] FAST spr round 5 (radius: 25) [02:03:39 -18205.982665] Model parameter optimization (eps = 1.000000) [02:03:48 -18203.362731] SLOW spr round 1 (radius: 5) [02:04:53 -18197.570801] SLOW spr round 2 (radius: 5) [02:05:56 -18197.569267] SLOW spr round 3 (radius: 10) [02:07:02 -18193.110213] SLOW spr round 4 (radius: 5) [02:08:15 -18184.067960] SLOW spr round 5 (radius: 5) [02:09:23 -18182.347868] SLOW spr round 6 (radius: 5) [02:10:27 -18182.347290] SLOW spr round 7 (radius: 10) [02:11:35 -18182.014738] SLOW spr round 8 (radius: 5) [02:12:47 -18182.014560] SLOW spr round 9 (radius: 10) [02:13:58 -18181.452780] SLOW spr round 10 (radius: 5) [02:15:08 -18181.452725] SLOW spr round 11 (radius: 10) [02:16:19 -18181.452685] SLOW spr round 12 (radius: 15) [02:17:41 -18137.387903] SLOW spr round 13 (radius: 5) [02:18:58 -18133.046323] SLOW spr round 14 (radius: 5) [02:20:09 -18133.045808] SLOW spr round 15 (radius: 10) [02:21:18 -18133.045798] SLOW spr round 16 (radius: 15) [02:22:39 -18131.129938] SLOW spr round 17 (radius: 5) [02:23:54 -18131.129933] SLOW spr round 18 (radius: 10) [02:25:05 -18131.045300] SLOW spr round 19 (radius: 15) [02:26:28 -18129.821083] SLOW spr round 20 (radius: 5) [02:27:45 -18129.377343] SLOW spr round 21 (radius: 5) [02:28:54 -18129.376765] SLOW spr round 22 (radius: 10) [02:30:03 -18129.376547] SLOW spr round 23 (radius: 15) [02:31:23 -18129.376433] SLOW spr round 24 (radius: 20) [02:33:00 -18128.851888] SLOW spr round 25 (radius: 5) [02:34:18 -18128.382495] SLOW spr round 26 (radius: 5) [02:35:28 -18128.382103] SLOW spr round 27 (radius: 10) [02:36:38 -18127.729624] SLOW spr round 28 (radius: 5) [02:37:49 -18127.729556] SLOW spr round 29 (radius: 10) [02:38:59 -18127.729529] SLOW spr round 30 (radius: 15) [02:40:20 -18127.729525] SLOW spr round 31 (radius: 20) [02:41:56 -18127.729522] SLOW spr round 32 (radius: 25) [02:43:52 -18127.729521] Model parameter optimization (eps = 0.100000) [02:44:02] ML tree search #3, logLikelihood: -18126.027615 [02:44:03 -75683.686366] Initial branch length optimization [02:44:03 -62552.006357] Model parameter optimization (eps = 10.000000) [02:44:21 -62189.938084] AUTODETECT spr round 1 (radius: 5) [02:45:24 -42402.807948] AUTODETECT spr round 2 (radius: 10) [02:46:30 -32171.153809] AUTODETECT spr round 3 (radius: 15) [02:47:46 -27167.307964] AUTODETECT spr round 4 (radius: 20) [02:49:09 -23497.678541] AUTODETECT spr round 5 (radius: 25) [02:50:35 -21673.174322] SPR radius for FAST iterations: 25 (autodetect) [02:50:35 -21673.174322] Model parameter optimization (eps = 3.000000) [02:50:47 -21630.963640] FAST spr round 1 (radius: 25) [02:52:00 -18822.256847] FAST spr round 2 (radius: 25) [02:53:06 -18385.707747] FAST spr round 3 (radius: 25) [02:54:10 -18301.377212] FAST spr round 4 (radius: 25) [02:55:13 -18291.981959] FAST spr round 5 (radius: 25) [02:56:12 -18289.767667] FAST spr round 6 (radius: 25) [02:57:10 -18289.677380] Model parameter optimization (eps = 1.000000) [02:57:20 -18285.881995] SLOW spr round 1 (radius: 5) [02:58:24 -18270.160247] SLOW spr round 2 (radius: 5) [02:59:28 -18260.809141] SLOW spr round 3 (radius: 5) [03:00:31 -18260.090217] SLOW spr round 4 (radius: 5) [03:01:34 -18260.014679] SLOW spr round 5 (radius: 10) [03:02:41 -18258.626323] SLOW spr round 6 (radius: 5) [03:03:54 -18258.625459] SLOW spr round 7 (radius: 10) [03:05:05 -18258.625374] SLOW spr round 8 (radius: 15) [03:06:29 -18251.975263] SLOW spr round 9 (radius: 5) [03:07:45 -18247.780053] SLOW spr round 10 (radius: 5) [03:08:56 -18241.572337] SLOW spr round 11 (radius: 5) [03:10:03 -18241.187040] SLOW spr round 12 (radius: 5) [03:11:07 -18241.187004] SLOW spr round 13 (radius: 10) [03:12:16 -18237.719056] SLOW spr round 14 (radius: 5) [03:13:30 -18237.667265] SLOW spr round 15 (radius: 10) [03:14:40 -18237.666871] SLOW spr round 16 (radius: 15) [03:16:00 -18236.859637] SLOW spr round 17 (radius: 5) [03:17:14 -18236.859506] SLOW spr round 18 (radius: 10) [03:18:27 -18236.859500] SLOW spr round 19 (radius: 15) [03:19:49 -18234.478537] SLOW spr round 20 (radius: 5) [03:21:05 -18157.034265] SLOW spr round 21 (radius: 5) [03:22:14 -18157.031763] SLOW spr round 22 (radius: 10) [03:23:23 -18157.031228] SLOW spr round 23 (radius: 15) [03:24:44 -18157.031060] SLOW spr round 24 (radius: 20) [03:26:26 -18156.396842] SLOW spr round 25 (radius: 5) [03:27:43 -18156.358715] SLOW spr round 26 (radius: 10) [03:28:56 -18156.357909] SLOW spr round 27 (radius: 15) [03:30:16 -18156.357908] SLOW spr round 28 (radius: 20) [03:31:55 -18156.357908] SLOW spr round 29 (radius: 25) [03:33:57 -18156.357908] Model parameter optimization (eps = 0.100000) [03:34:06] ML tree search #4, logLikelihood: -18150.829318 [03:34:06 -75544.019283] Initial branch length optimization [03:34:07 -62604.164302] Model parameter optimization (eps = 10.000000) [03:34:22 -62389.563302] AUTODETECT spr round 1 (radius: 5) [03:35:24 -42303.077196] AUTODETECT spr round 2 (radius: 10) [03:36:30 -29915.962226] AUTODETECT spr round 3 (radius: 15) [03:37:44 -24835.683155] AUTODETECT spr round 4 (radius: 20) [03:39:07 -23085.857571] AUTODETECT spr round 5 (radius: 25) [03:40:45 -22476.217316] SPR radius for FAST iterations: 25 (autodetect) [03:40:45 -22476.217316] Model parameter optimization (eps = 3.000000) [03:41:00 -22384.739240] FAST spr round 1 (radius: 25) [03:42:16 -19098.688547] FAST spr round 2 (radius: 25) [03:43:23 -18849.380746] FAST spr round 3 (radius: 25) [03:44:26 -18836.547764] FAST spr round 4 (radius: 25) [03:45:25 -18832.826210] FAST spr round 5 (radius: 25) [03:46:22 -18832.825136] Model parameter optimization (eps = 1.000000) [03:46:35 -18827.795761] SLOW spr round 1 (radius: 5) [03:47:23 -18821.560917] SLOW spr round 2 (radius: 5) [03:48:12 -18821.329900] SLOW spr round 3 (radius: 5) [03:49:06 -18821.329765] SLOW spr round 4 (radius: 10) [03:50:07 -18819.576111] SLOW spr round 5 (radius: 5) [03:51:15 -18810.112254] SLOW spr round 6 (radius: 5) [03:52:19 -18809.449482] SLOW spr round 7 (radius: 5) [03:53:18 -18809.445744] SLOW spr round 8 (radius: 10) [03:54:20 -18802.279046] SLOW spr round 9 (radius: 5) [03:55:28 -18799.113428] SLOW spr round 10 (radius: 5) [03:56:31 -18798.644040] SLOW spr round 11 (radius: 5) [03:57:31 -18798.274084] SLOW spr round 12 (radius: 5) [03:58:28 -18798.273918] SLOW spr round 13 (radius: 10) [03:59:28 -18798.273883] SLOW spr round 14 (radius: 15) [04:00:41 -18793.572679] SLOW spr round 15 (radius: 5) [04:01:49 -18793.360524] SLOW spr round 16 (radius: 5) [04:02:52 -18791.320459] SLOW spr round 17 (radius: 5) [04:03:51 -18791.320398] SLOW spr round 18 (radius: 10) [04:04:50 -18791.320370] SLOW spr round 19 (radius: 15) [04:05:59 -18791.320370] SLOW spr round 20 (radius: 20) [04:07:23 -18791.320370] SLOW spr round 21 (radius: 25) [04:08:53 -18752.747996] SLOW spr round 22 (radius: 5) [04:10:02 -18752.645141] SLOW spr round 23 (radius: 5) [04:11:04 -18752.645127] SLOW spr round 24 (radius: 10) [04:12:06 -18752.645016] SLOW spr round 25 (radius: 15) [04:13:19 -18752.642239] SLOW spr round 26 (radius: 20) [04:14:44 -18752.642187] SLOW spr round 27 (radius: 25) [04:16:18 -18742.471315] SLOW spr round 28 (radius: 5) [04:17:28 -18742.470841] SLOW spr round 29 (radius: 10) [04:18:34 -18742.470804] SLOW spr round 30 (radius: 15) [04:19:45 -18742.470803] SLOW spr round 31 (radius: 20) [04:21:11 -18742.470803] SLOW spr round 32 (radius: 25) [04:22:47 -18742.470803] Model parameter optimization (eps = 0.100000) [04:22:57] ML tree search #5, logLikelihood: -18741.735007 [04:22:57 -75695.128388] Initial branch length optimization [04:22:58 -62632.859312] Model parameter optimization (eps = 10.000000) [04:23:11 -62380.506414] AUTODETECT spr round 1 (radius: 5) [04:24:08 -42231.684710] AUTODETECT spr round 2 (radius: 10) [04:25:09 -31575.068030] AUTODETECT spr round 3 (radius: 15) [04:26:16 -26451.674804] AUTODETECT spr round 4 (radius: 20) [04:27:30 -25307.383894] AUTODETECT spr round 5 (radius: 25) [04:29:01 -23810.484892] SPR radius for FAST iterations: 25 (autodetect) [04:29:01 -23810.484892] Model parameter optimization (eps = 3.000000) [04:29:16 -23769.115316] FAST spr round 1 (radius: 25) [04:30:26 -18891.633748] FAST spr round 2 (radius: 25) [04:31:27 -18401.232856] FAST spr round 3 (radius: 25) [04:32:26 -18318.735583] FAST spr round 4 (radius: 25) [04:33:21 -18308.131893] FAST spr round 5 (radius: 25) [04:34:14 -18306.998959] FAST spr round 6 (radius: 25) [04:35:07 -18306.998933] Model parameter optimization (eps = 1.000000) [04:35:19 -18294.910557] SLOW spr round 1 (radius: 5) [04:36:16 -18285.129709] SLOW spr round 2 (radius: 5) [04:37:15 -18280.992412] SLOW spr round 3 (radius: 5) [04:38:14 -18280.188773] SLOW spr round 4 (radius: 5) [04:39:12 -18280.187508] SLOW spr round 5 (radius: 10) [04:40:13 -18276.157981] SLOW spr round 6 (radius: 5) [04:41:20 -18273.220252] SLOW spr round 7 (radius: 5) [04:42:23 -18273.217700] SLOW spr round 8 (radius: 10) [04:43:24 -18272.815763] SLOW spr round 9 (radius: 5) [04:44:30 -18272.815100] SLOW spr round 10 (radius: 10) [04:45:34 -18272.707180] SLOW spr round 11 (radius: 5) [04:46:38 -18272.707014] SLOW spr round 12 (radius: 10) [04:47:42 -18272.706906] SLOW spr round 13 (radius: 15) [04:48:56 -18269.189694] SLOW spr round 14 (radius: 5) [04:50:05 -18269.188246] SLOW spr round 15 (radius: 10) [04:51:12 -18269.188048] SLOW spr round 16 (radius: 15) [04:52:25 -18269.187996] SLOW spr round 17 (radius: 20) [04:53:51 -18268.878381] SLOW spr round 18 (radius: 5) [04:55:01 -18268.877149] SLOW spr round 19 (radius: 10) [04:56:06 -18268.877148] SLOW spr round 20 (radius: 15) [04:57:19 -18268.877148] SLOW spr round 21 (radius: 20) [04:58:43 -18268.877148] SLOW spr round 22 (radius: 25) [05:00:21 -18267.582111] SLOW spr round 23 (radius: 5) [05:01:31 -18267.581637] SLOW spr round 24 (radius: 10) [05:02:37 -18267.581635] SLOW spr round 25 (radius: 15) [05:03:50 -18267.581635] SLOW spr round 26 (radius: 20) [05:05:13 -18267.581635] SLOW spr round 27 (radius: 25) [05:06:50 -18267.016386] SLOW spr round 28 (radius: 5) [05:08:00 -18267.016362] SLOW spr round 29 (radius: 10) [05:09:05 -18267.016362] SLOW spr round 30 (radius: 15) [05:10:17 -18267.016362] SLOW spr round 31 (radius: 20) [05:11:40 -18267.016362] SLOW spr round 32 (radius: 25) [05:13:18 -18267.016362] Model parameter optimization (eps = 0.100000) [05:13:27] ML tree search #6, logLikelihood: -18263.783309 [05:13:27 -75987.226725] Initial branch length optimization [05:13:28 -62646.802092] Model parameter optimization (eps = 10.000000) [05:13:55 -62095.302722] AUTODETECT spr round 1 (radius: 5) [05:14:52 -44291.342407] AUTODETECT spr round 2 (radius: 10) [05:15:53 -31834.741668] AUTODETECT spr round 3 (radius: 15) [05:17:01 -27433.476243] AUTODETECT spr round 4 (radius: 20) [05:18:22 -23692.353209] AUTODETECT spr round 5 (radius: 25) [05:19:53 -22363.505142] SPR radius for FAST iterations: 25 (autodetect) [05:19:53 -22363.505142] Model parameter optimization (eps = 3.000000) [05:20:10 -22278.190477] FAST spr round 1 (radius: 25) [05:21:25 -19021.928774] FAST spr round 2 (radius: 25) [05:22:28 -18724.202088] FAST spr round 3 (radius: 25) [05:23:26 -18668.132806] FAST spr round 4 (radius: 25) [05:24:22 -18661.210352] FAST spr round 5 (radius: 25) [05:25:17 -18656.624337] FAST spr round 6 (radius: 25) [05:26:12 -18652.146550] FAST spr round 7 (radius: 25) [05:27:05 -18651.610962] FAST spr round 8 (radius: 25) [05:27:58 -18651.610620] Model parameter optimization (eps = 1.000000) [05:28:05 -18649.097695] SLOW spr round 1 (radius: 5) [05:29:04 -18645.446645] SLOW spr round 2 (radius: 5) [05:30:02 -18644.063181] SLOW spr round 3 (radius: 5) [05:31:00 -18643.765630] SLOW spr round 4 (radius: 5) [05:31:57 -18643.764699] SLOW spr round 5 (radius: 10) [05:32:58 -18634.701325] SLOW spr round 6 (radius: 5) [05:34:05 -18624.381936] SLOW spr round 7 (radius: 5) [05:35:07 -18621.390658] SLOW spr round 8 (radius: 5) [05:36:05 -18621.389832] SLOW spr round 9 (radius: 10) [05:37:04 -18620.262884] SLOW spr round 10 (radius: 5) [05:38:09 -18620.262873] SLOW spr round 11 (radius: 10) [05:39:12 -18617.566059] SLOW spr round 12 (radius: 5) [05:40:17 -18614.036063] SLOW spr round 13 (radius: 5) [05:41:19 -18608.575988] SLOW spr round 14 (radius: 5) [05:42:15 -18608.575913] SLOW spr round 15 (radius: 10) [05:43:12 -18608.575910] SLOW spr round 16 (radius: 15) [05:44:21 -18608.575856] SLOW spr round 17 (radius: 20) [05:45:41 -18606.736788] SLOW spr round 18 (radius: 5) [05:46:48 -18606.497163] SLOW spr round 19 (radius: 5) [05:47:52 -18606.495364] SLOW spr round 20 (radius: 10) [05:48:52 -18606.495200] SLOW spr round 21 (radius: 15) [05:50:00 -18605.757121] SLOW spr round 22 (radius: 5) [05:51:06 -18605.757117] SLOW spr round 23 (radius: 10) [05:52:08 -18605.757117] SLOW spr round 24 (radius: 15) [05:53:20 -18605.757117] SLOW spr round 25 (radius: 20) [05:54:43 -18605.757117] SLOW spr round 26 (radius: 25) [05:56:17 -18602.159043] SLOW spr round 27 (radius: 5) [05:57:25 -18582.994890] SLOW spr round 28 (radius: 5) [05:58:25 -18582.994624] SLOW spr round 29 (radius: 10) [05:59:24 -18582.994598] SLOW spr round 30 (radius: 15) [06:00:35 -18582.994595] SLOW spr round 31 (radius: 20) [06:01:57 -18582.601567] SLOW spr round 32 (radius: 5) [06:03:04 -18582.600072] SLOW spr round 33 (radius: 10) [06:04:05 -18582.600048] SLOW spr round 34 (radius: 15) [06:05:12 -18582.600048] SLOW spr round 35 (radius: 20) [06:06:31 -18582.600048] SLOW spr round 36 (radius: 25) [06:08:05 -18582.144590] SLOW spr round 37 (radius: 5) [06:09:14 -18582.142387] SLOW spr round 38 (radius: 10) [06:10:19 -18582.142273] SLOW spr round 39 (radius: 15) [06:11:27 -18582.142264] SLOW spr round 40 (radius: 20) [06:12:52 -18582.142261] SLOW spr round 41 (radius: 25) [06:14:31 -18582.142260] Model parameter optimization (eps = 0.100000) [06:14:36] ML tree search #7, logLikelihood: -18582.032398 [06:14:36 -76002.244910] Initial branch length optimization [06:14:37 -62556.914383] Model parameter optimization (eps = 10.000000) [06:14:56 -62270.292545] AUTODETECT spr round 1 (radius: 5) [06:15:52 -43239.855722] AUTODETECT spr round 2 (radius: 10) [06:16:53 -32404.274877] AUTODETECT spr round 3 (radius: 15) [06:18:00 -26179.620689] AUTODETECT spr round 4 (radius: 20) [06:19:19 -23051.475430] AUTODETECT spr round 5 (radius: 25) [06:20:52 -21958.191219] SPR radius for FAST iterations: 25 (autodetect) [06:20:52 -21958.191219] Model parameter optimization (eps = 3.000000) [06:21:05 -21912.320342] FAST spr round 1 (radius: 25) [06:22:14 -18761.616783] FAST spr round 2 (radius: 25) [06:23:14 -18407.641281] FAST spr round 3 (radius: 25) [06:24:10 -18274.068217] FAST spr round 4 (radius: 25) [06:25:04 -18272.935912] FAST spr round 5 (radius: 25) [06:25:57 -18272.934519] Model parameter optimization (eps = 1.000000) [06:26:02 -18270.293909] SLOW spr round 1 (radius: 5) [06:27:01 -18261.988948] SLOW spr round 2 (radius: 5) [06:28:01 -18259.234767] SLOW spr round 3 (radius: 5) [06:28:58 -18258.538875] SLOW spr round 4 (radius: 5) [06:29:56 -18258.272641] SLOW spr round 5 (radius: 5) [06:30:53 -18258.272586] SLOW spr round 6 (radius: 10) [06:31:54 -18250.068277] SLOW spr round 7 (radius: 5) [06:33:03 -18243.346735] SLOW spr round 8 (radius: 5) [06:34:07 -18240.985700] SLOW spr round 9 (radius: 5) [06:35:07 -18240.391912] SLOW spr round 10 (radius: 5) [06:36:06 -18240.391806] SLOW spr round 11 (radius: 10) [06:37:07 -18240.391726] SLOW spr round 12 (radius: 15) [06:38:21 -18239.985270] SLOW spr round 13 (radius: 5) [06:39:29 -18239.984922] SLOW spr round 14 (radius: 10) [06:40:35 -18236.337180] SLOW spr round 15 (radius: 5) [06:41:42 -18234.060946] SLOW spr round 16 (radius: 5) [06:42:45 -18229.691425] SLOW spr round 17 (radius: 5) [06:43:44 -18229.690349] SLOW spr round 18 (radius: 10) [06:44:45 -18226.874054] SLOW spr round 19 (radius: 5) [06:45:53 -18224.091253] SLOW spr round 20 (radius: 5) [06:46:55 -18224.091117] SLOW spr round 21 (radius: 10) [06:47:55 -18224.091095] SLOW spr round 22 (radius: 15) [06:49:09 -18224.091073] SLOW spr round 23 (radius: 20) [06:50:37 -18214.283927] SLOW spr round 24 (radius: 5) [06:51:47 -18213.154848] SLOW spr round 25 (radius: 5) [06:52:51 -18212.946344] SLOW spr round 26 (radius: 5) [06:53:51 -18212.946293] SLOW spr round 27 (radius: 10) [06:54:52 -18212.862673] SLOW spr round 28 (radius: 15) [06:56:05 -18211.606427] SLOW spr round 29 (radius: 5) [06:57:14 -18210.600760] SLOW spr round 30 (radius: 5) [06:58:17 -18210.600483] SLOW spr round 31 (radius: 10) [06:59:21 -18209.804073] SLOW spr round 32 (radius: 5) [07:00:28 -18209.666216] SLOW spr round 33 (radius: 5) [07:01:31 -18209.664344] SLOW spr round 34 (radius: 10) [07:02:33 -18209.664249] SLOW spr round 35 (radius: 15) [07:03:47 -18209.664216] SLOW spr round 36 (radius: 20) [07:05:11 -18209.611549] SLOW spr round 37 (radius: 25) [07:06:46 -18207.689065] SLOW spr round 38 (radius: 5) [07:07:56 -18207.688050] SLOW spr round 39 (radius: 10) [07:09:01 -18207.687820] SLOW spr round 40 (radius: 15) [07:10:13 -18207.687713] SLOW spr round 41 (radius: 20) [07:11:36 -18207.687695] SLOW spr round 42 (radius: 25) [07:13:10 -18207.687687] Model parameter optimization (eps = 0.100000) [07:13:16] ML tree search #8, logLikelihood: -18203.693117 [07:13:17 -75750.900228] Initial branch length optimization [07:13:17 -62811.350173] Model parameter optimization (eps = 10.000000) [07:13:33 -62473.334923] AUTODETECT spr round 1 (radius: 5) [07:14:28 -41960.779659] AUTODETECT spr round 2 (radius: 10) [07:15:29 -31166.547858] AUTODETECT spr round 3 (radius: 15) [07:16:37 -27242.503532] AUTODETECT spr round 4 (radius: 20) [07:17:52 -25641.632401] AUTODETECT spr round 5 (radius: 25) [07:19:14 -24209.129743] SPR radius for FAST iterations: 25 (autodetect) [07:19:14 -24209.129743] Model parameter optimization (eps = 3.000000) [07:19:28 -24170.588843] FAST spr round 1 (radius: 25) [07:20:42 -18893.119603] FAST spr round 2 (radius: 25) [07:21:45 -18430.230960] FAST spr round 3 (radius: 25) [07:22:42 -18407.001346] FAST spr round 4 (radius: 25) [07:23:37 -18398.755963] FAST spr round 5 (radius: 25) [07:24:31 -18396.946622] FAST spr round 6 (radius: 25) [07:25:24 -18394.970726] FAST spr round 7 (radius: 25) [07:26:17 -18393.413879] FAST spr round 8 (radius: 25) [07:27:09 -18393.413473] Model parameter optimization (eps = 1.000000) [07:27:23 -18379.468661] SLOW spr round 1 (radius: 5) [07:28:22 -18375.082958] SLOW spr round 2 (radius: 5) [07:29:20 -18365.915572] SLOW spr round 3 (radius: 5) [07:30:17 -18365.912986] SLOW spr round 4 (radius: 10) [07:31:16 -18362.061648] SLOW spr round 5 (radius: 5) [07:32:22 -18361.392409] SLOW spr round 6 (radius: 5) [07:33:23 -18360.368947] SLOW spr round 7 (radius: 5) [07:34:22 -18359.490136] SLOW spr round 8 (radius: 5) [07:35:20 -18359.489231] SLOW spr round 9 (radius: 10) [07:36:20 -18359.489200] SLOW spr round 10 (radius: 15) [07:37:35 -18355.920133] SLOW spr round 11 (radius: 5) [07:38:44 -18355.857805] SLOW spr round 12 (radius: 10) [07:39:49 -18353.394088] SLOW spr round 13 (radius: 5) [07:40:52 -18353.394064] SLOW spr round 14 (radius: 10) [07:41:53 -18353.394030] SLOW spr round 15 (radius: 15) [07:43:07 -18351.852324] SLOW spr round 16 (radius: 5) [07:44:16 -18351.852194] SLOW spr round 17 (radius: 10) [07:45:20 -18351.852124] SLOW spr round 18 (radius: 15) [07:46:33 -18351.852100] SLOW spr round 19 (radius: 20) [07:48:04 -18348.254678] SLOW spr round 20 (radius: 5) [07:49:13 -18347.224728] SLOW spr round 21 (radius: 5) [07:50:16 -18347.223902] SLOW spr round 22 (radius: 10) [07:51:17 -18347.133851] SLOW spr round 23 (radius: 15) [07:52:30 -18347.133310] SLOW spr round 24 (radius: 20) [07:54:01 -18347.133214] SLOW spr round 25 (radius: 25) [07:55:43 -18346.972564] SLOW spr round 26 (radius: 5) [07:56:52 -18346.747864] SLOW spr round 27 (radius: 5) [07:57:56 -18346.747788] SLOW spr round 28 (radius: 10) [07:58:58 -18346.009269] SLOW spr round 29 (radius: 5) [08:00:02 -18346.009237] SLOW spr round 30 (radius: 10) [08:01:05 -18346.009212] SLOW spr round 31 (radius: 15) [08:02:19 -18346.009188] SLOW spr round 32 (radius: 20) [08:03:50 -18346.009164] SLOW spr round 33 (radius: 25) [08:05:32 -18346.009139] Model parameter optimization (eps = 0.100000) [08:05:38] ML tree search #9, logLikelihood: -18345.550537 [08:05:38 -75722.799345] Initial branch length optimization [08:05:39 -62954.570069] Model parameter optimization (eps = 10.000000) [08:05:55 -62644.009940] AUTODETECT spr round 1 (radius: 5) [08:06:52 -43081.019953] AUTODETECT spr round 2 (radius: 10) [08:07:54 -30060.206479] AUTODETECT spr round 3 (radius: 15) [08:09:03 -24797.741768] AUTODETECT spr round 4 (radius: 20) [08:10:20 -22754.867179] AUTODETECT spr round 5 (radius: 25) [08:11:49 -21961.471073] SPR radius for FAST iterations: 25 (autodetect) [08:11:49 -21961.471073] Model parameter optimization (eps = 3.000000) [08:12:02 -21886.622444] FAST spr round 1 (radius: 25) [08:13:10 -19132.987189] FAST spr round 2 (radius: 25) [08:14:10 -18821.769923] FAST spr round 3 (radius: 25) [08:15:08 -18793.692850] FAST spr round 4 (radius: 25) [08:16:05 -18789.567772] FAST spr round 5 (radius: 25) [08:16:58 -18789.566400] Model parameter optimization (eps = 1.000000) [08:17:05 -18788.434541] SLOW spr round 1 (radius: 5) [08:18:04 -18783.556557] SLOW spr round 2 (radius: 5) [08:19:03 -18779.900896] SLOW spr round 3 (radius: 5) [08:20:01 -18779.351268] SLOW spr round 4 (radius: 5) [08:20:57 -18779.350911] SLOW spr round 5 (radius: 10) [08:22:00 -18776.331182] SLOW spr round 6 (radius: 5) [08:23:07 -18774.282343] SLOW spr round 7 (radius: 5) [08:24:11 -18774.137147] SLOW spr round 8 (radius: 5) [08:25:09 -18774.137115] SLOW spr round 9 (radius: 10) [08:26:10 -18772.376319] SLOW spr round 10 (radius: 5) [08:27:16 -18772.375174] SLOW spr round 11 (radius: 10) [08:28:20 -18772.375071] SLOW spr round 12 (radius: 15) [08:29:36 -18769.606800] SLOW spr round 13 (radius: 5) [08:30:44 -18769.603693] SLOW spr round 14 (radius: 10) [08:31:49 -18769.603657] SLOW spr round 15 (radius: 15) [08:33:02 -18769.603648] SLOW spr round 16 (radius: 20) [08:34:34 -18754.643993] SLOW spr round 17 (radius: 5) [08:35:45 -18725.847453] SLOW spr round 18 (radius: 5) [08:36:50 -18724.599393] SLOW spr round 19 (radius: 5) [08:37:52 -18723.306362] SLOW spr round 20 (radius: 5) [08:38:50 -18723.305358] SLOW spr round 21 (radius: 10) [08:39:51 -18723.305353] SLOW spr round 22 (radius: 15) [08:41:07 -18722.848800] SLOW spr round 23 (radius: 5) [08:42:16 -18722.789553] SLOW spr round 24 (radius: 10) [08:43:21 -18722.485649] SLOW spr round 25 (radius: 5) [08:44:26 -18722.485619] SLOW spr round 26 (radius: 10) [08:45:29 -18721.558282] SLOW spr round 27 (radius: 5) [08:46:34 -18721.558208] SLOW spr round 28 (radius: 10) [08:47:38 -18721.558208] SLOW spr round 29 (radius: 15) [08:48:54 -18721.558208] SLOW spr round 30 (radius: 20) [08:50:24 -18721.090165] SLOW spr round 31 (radius: 5) [08:51:32 -18718.964190] SLOW spr round 32 (radius: 5) [08:52:34 -18718.964159] SLOW spr round 33 (radius: 10) [08:53:35 -18718.964158] SLOW spr round 34 (radius: 15) [08:54:46 -18718.964158] SLOW spr round 35 (radius: 20) [08:56:10 -18718.964158] SLOW spr round 36 (radius: 25) [08:57:49 -18718.556774] SLOW spr round 37 (radius: 5) [08:58:58 -18718.556740] SLOW spr round 38 (radius: 10) [09:00:03 -18718.556739] SLOW spr round 39 (radius: 15) [09:01:17 -18718.556739] SLOW spr round 40 (radius: 20) [09:02:45 -18718.432191] SLOW spr round 41 (radius: 5) [09:03:54 -18718.432191] SLOW spr round 42 (radius: 10) [09:04:59 -18718.432191] SLOW spr round 43 (radius: 15) [09:06:12 -18718.432191] SLOW spr round 44 (radius: 20) [09:07:42 -18718.432191] SLOW spr round 45 (radius: 25) [09:09:22 -18716.353343] SLOW spr round 46 (radius: 5) [09:10:32 -18700.029393] SLOW spr round 47 (radius: 5) [09:11:34 -18700.028442] SLOW spr round 48 (radius: 10) [09:12:34 -18700.028422] SLOW spr round 49 (radius: 15) [09:13:44 -18700.028421] SLOW spr round 50 (radius: 20) [09:15:07 -18700.028421] SLOW spr round 51 (radius: 25) [09:16:43 -18700.028421] Model parameter optimization (eps = 0.100000) [09:16:50] ML tree search #10, logLikelihood: -18699.767208 [09:16:50 -75747.357689] Initial branch length optimization [09:16:51 -62362.774381] Model parameter optimization (eps = 10.000000) [09:17:18 -61880.138180] AUTODETECT spr round 1 (radius: 5) [09:18:12 -43355.105670] AUTODETECT spr round 2 (radius: 10) [09:19:10 -31427.711162] AUTODETECT spr round 3 (radius: 15) [09:20:16 -24624.465680] AUTODETECT spr round 4 (radius: 20) [09:21:25 -22677.968545] AUTODETECT spr round 5 (radius: 25) [09:22:46 -22131.759046] SPR radius for FAST iterations: 25 (autodetect) [09:22:46 -22131.759046] Model parameter optimization (eps = 3.000000) [09:23:03 -22044.317678] FAST spr round 1 (radius: 25) [09:24:08 -19014.908901] FAST spr round 2 (radius: 25) [09:25:05 -18771.374111] FAST spr round 3 (radius: 25) [09:25:59 -18716.225839] FAST spr round 4 (radius: 25) [09:26:50 -18713.027927] FAST spr round 5 (radius: 25) [09:27:39 -18713.026993] Model parameter optimization (eps = 1.000000) [09:27:45 -18712.024332] SLOW spr round 1 (radius: 5) [09:28:40 -18708.176619] SLOW spr round 2 (radius: 5) [09:29:34 -18707.562205] SLOW spr round 3 (radius: 5) [09:30:27 -18707.560868] SLOW spr round 4 (radius: 10) [09:31:24 -18706.989521] SLOW spr round 5 (radius: 5) [09:32:28 -18704.648759] SLOW spr round 6 (radius: 5) [09:33:27 -18703.159480] SLOW spr round 7 (radius: 5) [09:34:23 -18703.158728] SLOW spr round 8 (radius: 10) [09:35:21 -18702.828929] SLOW spr round 9 (radius: 5) [09:36:23 -18702.821218] SLOW spr round 10 (radius: 10) [09:37:22 -18702.820962] SLOW spr round 11 (radius: 15) [09:38:35 -18696.654305] SLOW spr round 12 (radius: 5) [09:39:42 -18690.040525] SLOW spr round 13 (radius: 5) [09:40:43 -18689.140830] SLOW spr round 14 (radius: 5) [09:41:40 -18689.140456] SLOW spr round 15 (radius: 10) [09:42:38 -18689.140453] SLOW spr round 16 (radius: 15) [09:43:51 -18689.140414] SLOW spr round 17 (radius: 20) [09:45:21 -18687.379606] SLOW spr round 18 (radius: 5) [09:46:28 -18686.817503] SLOW spr round 19 (radius: 5) [09:47:28 -18686.817478] SLOW spr round 20 (radius: 10) [09:48:28 -18686.817452] SLOW spr round 21 (radius: 15) [09:49:39 -18686.817452] SLOW spr round 22 (radius: 20) [09:51:08 -18686.817451] SLOW spr round 23 (radius: 25) [09:52:54 -18680.769590] SLOW spr round 24 (radius: 5) [09:54:01 -18663.013811] SLOW spr round 25 (radius: 5) [09:55:02 -18663.013517] SLOW spr round 26 (radius: 10) [09:56:03 -18662.053575] SLOW spr round 27 (radius: 5) [09:57:05 -18662.053567] SLOW spr round 28 (radius: 10) [09:58:06 -18662.053567] SLOW spr round 29 (radius: 15) [09:59:18 -18662.053567] SLOW spr round 30 (radius: 20) [10:00:48 -18662.053567] SLOW spr round 31 (radius: 25) [10:02:35 -18662.053567] Model parameter optimization (eps = 0.100000) [10:02:45] ML tree search #11, logLikelihood: -18660.931003 [10:02:45 -75314.685451] Initial branch length optimization [10:02:46 -62589.942042] Model parameter optimization (eps = 10.000000) [10:03:20 -62010.485295] AUTODETECT spr round 1 (radius: 5) [10:04:14 -43302.425018] AUTODETECT spr round 2 (radius: 10) [10:05:11 -33004.879885] AUTODETECT spr round 3 (radius: 15) [10:06:15 -27345.498048] AUTODETECT spr round 4 (radius: 20) [10:07:25 -24434.995678] AUTODETECT spr round 5 (radius: 25) [10:08:46 -22703.116833] SPR radius for FAST iterations: 25 (autodetect) [10:08:46 -22703.116833] Model parameter optimization (eps = 3.000000) [10:09:05 -22642.925273] FAST spr round 1 (radius: 25) [10:10:13 -19085.836277] FAST spr round 2 (radius: 25) [10:11:12 -18412.081204] FAST spr round 3 (radius: 25) [10:12:06 -18313.383406] FAST spr round 4 (radius: 25) [10:13:00 -18236.114424] FAST spr round 5 (radius: 25) [10:13:51 -18235.348443] FAST spr round 6 (radius: 25) [10:14:41 -18234.659858] FAST spr round 7 (radius: 25) [10:15:32 -18234.659812] Model parameter optimization (eps = 1.000000) [10:15:41 -18232.560932] SLOW spr round 1 (radius: 5) [10:16:36 -18225.199238] SLOW spr round 2 (radius: 5) [10:17:31 -18222.922102] SLOW spr round 3 (radius: 5) [10:18:26 -18222.921159] SLOW spr round 4 (radius: 10) [10:19:25 -18217.171113] SLOW spr round 5 (radius: 5) [10:20:30 -18209.788884] SLOW spr round 6 (radius: 5) [10:21:31 -18209.755016] SLOW spr round 7 (radius: 10) [10:22:33 -18208.132532] SLOW spr round 8 (radius: 5) [10:23:38 -18207.821959] SLOW spr round 9 (radius: 5) [10:24:37 -18207.821397] SLOW spr round 10 (radius: 10) [10:25:38 -18207.522503] SLOW spr round 11 (radius: 5) [10:26:40 -18207.522440] SLOW spr round 12 (radius: 10) [10:27:41 -18207.522432] SLOW spr round 13 (radius: 15) [10:28:50 -18203.224456] SLOW spr round 14 (radius: 5) [10:29:55 -18203.203016] SLOW spr round 15 (radius: 10) [10:30:57 -18203.191105] SLOW spr round 16 (radius: 15) [10:32:08 -18203.070433] SLOW spr round 17 (radius: 5) [10:33:16 -18202.808645] SLOW spr round 18 (radius: 5) [10:34:16 -18202.808128] SLOW spr round 19 (radius: 10) [10:35:18 -18202.808128] SLOW spr round 20 (radius: 15) [10:36:28 -18202.808128] SLOW spr round 21 (radius: 20) [10:37:52 -18202.477388] SLOW spr round 22 (radius: 5) [10:38:58 -18202.021659] SLOW spr round 23 (radius: 5) [10:39:58 -18202.021621] SLOW spr round 24 (radius: 10) [10:40:58 -18202.021621] SLOW spr round 25 (radius: 15) [10:42:10 -18202.021621] SLOW spr round 26 (radius: 20) [10:43:37 -18202.021618] SLOW spr round 27 (radius: 25) [10:45:20 -18201.743301] SLOW spr round 28 (radius: 5) [10:46:27 -18201.743300] SLOW spr round 29 (radius: 10) [10:47:31 -18201.743300] SLOW spr round 30 (radius: 15) [10:48:43 -18201.743300] SLOW spr round 31 (radius: 20) [10:50:09 -18201.743300] SLOW spr round 32 (radius: 25) [10:51:54 -18201.743300] Model parameter optimization (eps = 0.100000) [10:52:01] ML tree search #12, logLikelihood: -18201.479943 [10:52:01 -75824.652648] Initial branch length optimization [10:52:02 -62790.743891] Model parameter optimization (eps = 10.000000) [10:52:25 -62406.262091] AUTODETECT spr round 1 (radius: 5) [10:53:21 -42946.773201] AUTODETECT spr round 2 (radius: 10) [10:54:22 -30354.184212] AUTODETECT spr round 3 (radius: 15) [10:55:30 -24243.804038] AUTODETECT spr round 4 (radius: 20) [10:56:46 -21908.263622] AUTODETECT spr round 5 (radius: 25) [10:58:11 -21227.214264] SPR radius for FAST iterations: 25 (autodetect) [10:58:11 -21227.214264] Model parameter optimization (eps = 3.000000) [10:58:23 -21177.188779] FAST spr round 1 (radius: 25) [10:59:28 -18430.355212] FAST spr round 2 (radius: 25) [11:00:26 -18259.749794] FAST spr round 3 (radius: 25) [11:01:23 -18188.553742] FAST spr round 4 (radius: 25) [11:02:16 -18182.033479] FAST spr round 5 (radius: 25) [11:03:06 -18178.451783] FAST spr round 6 (radius: 25) [11:03:57 -18176.069458] FAST spr round 7 (radius: 25) [11:04:47 -18176.069369] Model parameter optimization (eps = 1.000000) [11:04:55 -18174.303916] SLOW spr round 1 (radius: 5) [11:05:49 -18166.974618] SLOW spr round 2 (radius: 5) [11:06:44 -18157.947719] SLOW spr round 3 (radius: 5) [11:07:39 -18157.946317] SLOW spr round 4 (radius: 10) [11:08:39 -18144.324932] SLOW spr round 5 (radius: 5) [11:09:42 -18141.121199] SLOW spr round 6 (radius: 5) [11:10:41 -18140.821318] SLOW spr round 7 (radius: 5) [11:11:37 -18140.821207] SLOW spr round 8 (radius: 10) [11:12:36 -18140.821168] SLOW spr round 9 (radius: 15) [11:13:47 -18133.276300] SLOW spr round 10 (radius: 5) [11:14:54 -18132.383181] SLOW spr round 11 (radius: 5) [11:15:54 -18132.382898] SLOW spr round 12 (radius: 10) [11:16:53 -18132.382886] SLOW spr round 13 (radius: 15) [11:18:02 -18129.679718] SLOW spr round 14 (radius: 5) [11:19:08 -18128.798898] SLOW spr round 15 (radius: 5) [11:20:08 -18128.599275] SLOW spr round 16 (radius: 5) [11:21:05 -18128.595301] SLOW spr round 17 (radius: 10) [11:22:02 -18128.594736] SLOW spr round 18 (radius: 15) [11:23:10 -18128.594623] SLOW spr round 19 (radius: 20) [11:24:33 -18126.199760] SLOW spr round 20 (radius: 5) [11:25:39 -18125.431803] SLOW spr round 21 (radius: 5) [11:26:40 -18124.806488] SLOW spr round 22 (radius: 5) [11:27:37 -18124.806429] SLOW spr round 23 (radius: 10) [11:28:34 -18124.806428] SLOW spr round 24 (radius: 15) [11:29:42 -18124.806428] SLOW spr round 25 (radius: 20) [11:31:04 -18124.543148] SLOW spr round 26 (radius: 5) [11:32:11 -18124.538189] SLOW spr round 27 (radius: 10) [11:33:13 -18124.538183] SLOW spr round 28 (radius: 15) [11:34:22 -18124.538183] SLOW spr round 29 (radius: 20) [11:35:45 -18124.538183] SLOW spr round 30 (radius: 25) [11:37:25 -18115.095373] SLOW spr round 31 (radius: 5) [11:38:31 -18115.095286] SLOW spr round 32 (radius: 10) [11:39:34 -18115.095281] SLOW spr round 33 (radius: 15) [11:40:42 -18115.095280] SLOW spr round 34 (radius: 20) [11:42:05 -18115.095277] SLOW spr round 35 (radius: 25) [11:43:42 -18115.095277] Model parameter optimization (eps = 0.100000) [11:43:51] ML tree search #13, logLikelihood: -18114.171599 [11:43:51 -75978.444549] Initial branch length optimization [11:43:52 -62635.490460] Model parameter optimization (eps = 10.000000) [11:44:10 -62384.440426] AUTODETECT spr round 1 (radius: 5) [11:45:03 -43353.590976] AUTODETECT spr round 2 (radius: 10) [11:46:00 -31700.715989] AUTODETECT spr round 3 (radius: 15) [11:47:04 -26061.220057] AUTODETECT spr round 4 (radius: 20) [11:48:13 -23801.523485] AUTODETECT spr round 5 (radius: 25) [11:49:31 -22316.833124] SPR radius for FAST iterations: 25 (autodetect) [11:49:31 -22316.833124] Model parameter optimization (eps = 3.000000) [11:49:45 -22237.473926] FAST spr round 1 (radius: 25) [11:50:50 -18839.230816] FAST spr round 2 (radius: 25) [11:51:48 -18279.794107] FAST spr round 3 (radius: 25) [11:52:41 -18178.829701] FAST spr round 4 (radius: 25) [11:53:32 -18172.687644] FAST spr round 5 (radius: 25) [11:54:17 -18172.687254] Model parameter optimization (eps = 1.000000) [11:54:22 -18167.988142] SLOW spr round 1 (radius: 5) [11:55:10 -18164.384036] SLOW spr round 2 (radius: 5) [11:55:57 -18162.323494] SLOW spr round 3 (radius: 5) [11:56:44 -18161.857106] SLOW spr round 4 (radius: 5) [11:57:30 -18161.857089] SLOW spr round 5 (radius: 10) [11:58:20 -18155.738155] SLOW spr round 6 (radius: 5) [11:59:16 -18150.946126] SLOW spr round 7 (radius: 5) [12:00:06 -18150.943159] SLOW spr round 8 (radius: 10) [12:00:56 -18150.302026] SLOW spr round 9 (radius: 5) [12:01:50 -18150.301924] SLOW spr round 10 (radius: 10) [12:02:42 -18150.301903] SLOW spr round 11 (radius: 15) [12:03:42 -18147.043850] SLOW spr round 12 (radius: 5) [12:04:38 -18147.042874] SLOW spr round 13 (radius: 10) [12:05:32 -18147.042548] SLOW spr round 14 (radius: 15) [12:06:31 -18147.042382] SLOW spr round 15 (radius: 20) [12:07:43 -18145.810905] SLOW spr round 16 (radius: 5) [12:08:41 -18145.767929] SLOW spr round 17 (radius: 10) [12:09:35 -18145.765575] SLOW spr round 18 (radius: 15) [12:10:35 -18145.764394] SLOW spr round 19 (radius: 20) [12:11:46 -18145.763526] SLOW spr round 20 (radius: 25) [12:13:15 -18098.508624] SLOW spr round 21 (radius: 5) [12:14:14 -18096.349441] SLOW spr round 22 (radius: 5) [12:15:07 -18096.323305] SLOW spr round 23 (radius: 10) [12:15:58 -18096.323303] SLOW spr round 24 (radius: 15) [12:16:57 -18096.323303] SLOW spr round 25 (radius: 20) [12:18:09 -18092.382407] SLOW spr round 26 (radius: 5) [12:19:06 -18092.382349] SLOW spr round 27 (radius: 10) [12:20:00 -18092.382349] SLOW spr round 28 (radius: 15) [12:20:58 -18092.382349] SLOW spr round 29 (radius: 20) [12:22:10 -18092.382349] SLOW spr round 30 (radius: 25) [12:23:34 -18092.358669] Model parameter optimization (eps = 0.100000) [12:23:39] ML tree search #14, logLikelihood: -18092.068703 [12:23:39 -75119.933438] Initial branch length optimization [12:23:40 -61775.842942] Model parameter optimization (eps = 10.000000) [12:23:52 -61556.645593] AUTODETECT spr round 1 (radius: 5) [12:24:39 -43239.137378] AUTODETECT spr round 2 (radius: 10) [12:25:30 -31704.104423] AUTODETECT spr round 3 (radius: 15) [12:26:26 -25285.698295] AUTODETECT spr round 4 (radius: 20) [12:27:32 -22965.593205] AUTODETECT spr round 5 (radius: 25) [12:28:41 -22185.371196] SPR radius for FAST iterations: 25 (autodetect) [12:28:41 -22185.371196] Model parameter optimization (eps = 3.000000) [12:28:56 -22103.987824] FAST spr round 1 (radius: 25) [12:29:54 -18734.315422] FAST spr round 2 (radius: 25) [12:30:43 -18378.064982] FAST spr round 3 (radius: 25) [12:31:31 -18303.467990] FAST spr round 4 (radius: 25) [12:32:15 -18299.753257] FAST spr round 5 (radius: 25) [12:32:59 -18299.403557] FAST spr round 6 (radius: 25) [12:33:42 -18299.403230] Model parameter optimization (eps = 1.000000) [12:33:50 -18291.471734] SLOW spr round 1 (radius: 5) [12:34:38 -18278.277106] SLOW spr round 2 (radius: 5) [12:35:26 -18275.308383] SLOW spr round 3 (radius: 5) [12:36:13 -18275.307837] SLOW spr round 4 (radius: 10) [12:37:02 -18274.970467] SLOW spr round 5 (radius: 5) [12:37:57 -18274.433847] SLOW spr round 6 (radius: 5) [12:38:47 -18273.840611] SLOW spr round 7 (radius: 5) [12:39:35 -18273.840594] SLOW spr round 8 (radius: 10) [12:40:25 -18273.840572] SLOW spr round 9 (radius: 15) [12:41:25 -18272.564635] SLOW spr round 10 (radius: 5) [12:42:21 -18271.958092] SLOW spr round 11 (radius: 5) [12:43:12 -18271.957447] SLOW spr round 12 (radius: 10) [12:44:03 -18271.568570] SLOW spr round 13 (radius: 5) [12:44:56 -18271.568528] SLOW spr round 14 (radius: 10) [12:45:48 -18271.360426] SLOW spr round 15 (radius: 5) [12:46:41 -18271.360425] SLOW spr round 16 (radius: 10) [12:47:33 -18271.360425] SLOW spr round 17 (radius: 15) [12:48:33 -18271.360423] SLOW spr round 18 (radius: 20) [12:49:45 -18270.081927] SLOW spr round 19 (radius: 5) [12:50:43 -18270.081720] SLOW spr round 20 (radius: 10) [12:51:39 -18270.081716] SLOW spr round 21 (radius: 15) [12:52:42 -18268.330597] SLOW spr round 22 (radius: 5) [12:53:41 -18268.324463] SLOW spr round 23 (radius: 10) [12:54:37 -18268.322905] SLOW spr round 24 (radius: 15) [12:55:39 -18268.322276] SLOW spr round 25 (radius: 20) [12:56:53 -18268.321994] SLOW spr round 26 (radius: 25) [12:58:21 -18267.407983] SLOW spr round 27 (radius: 5) [12:59:21 -18267.399958] SLOW spr round 28 (radius: 10) [13:00:18 -18267.399956] SLOW spr round 29 (radius: 15) [13:01:21 -18267.399946] SLOW spr round 30 (radius: 20) [13:02:35 -18267.399904] SLOW spr round 31 (radius: 25) [13:04:01 -18267.399904] Model parameter optimization (eps = 0.100000) [13:04:05] ML tree search #15, logLikelihood: -18267.204627 [13:04:05 -75836.843394] Initial branch length optimization [13:04:06 -62828.427451] Model parameter optimization (eps = 10.000000) [13:04:29 -62488.659800] AUTODETECT spr round 1 (radius: 5) [13:05:19 -41694.699291] AUTODETECT spr round 2 (radius: 10) [13:06:13 -32960.484448] AUTODETECT spr round 3 (radius: 15) [13:07:12 -27348.192785] AUTODETECT spr round 4 (radius: 20) [13:08:24 -24404.153387] AUTODETECT spr round 5 (radius: 25) [13:09:49 -22301.075265] SPR radius for FAST iterations: 25 (autodetect) [13:09:49 -22301.075265] Model parameter optimization (eps = 3.000000) [13:09:58 -22263.304574] FAST spr round 1 (radius: 25) [13:10:58 -18671.415840] FAST spr round 2 (radius: 25) [13:11:48 -18340.326561] FAST spr round 3 (radius: 25) [13:12:35 -18313.580369] FAST spr round 4 (radius: 25) [13:13:19 -18309.468639] FAST spr round 5 (radius: 25) [13:14:02 -18309.468329] Model parameter optimization (eps = 1.000000) [13:14:08 -18304.323444] SLOW spr round 1 (radius: 5) [13:14:57 -18300.118075] SLOW spr round 2 (radius: 5) [13:15:45 -18299.649526] SLOW spr round 3 (radius: 5) [13:16:32 -18299.649028] SLOW spr round 4 (radius: 10) [13:17:22 -18298.866805] SLOW spr round 5 (radius: 5) [13:18:18 -18298.388298] SLOW spr round 6 (radius: 5) [13:19:11 -18297.078876] SLOW spr round 7 (radius: 5) [13:20:01 -18297.078331] SLOW spr round 8 (radius: 10) [13:20:53 -18297.078031] SLOW spr round 9 (radius: 15) [13:21:58 -18297.077748] SLOW spr round 10 (radius: 20) [13:23:15 -18294.969579] SLOW spr round 11 (radius: 5) [13:24:16 -18294.383608] SLOW spr round 12 (radius: 5) [13:25:10 -18294.383148] SLOW spr round 13 (radius: 10) [13:26:05 -18294.382783] SLOW spr round 14 (radius: 15) [13:27:10 -18294.382473] SLOW spr round 15 (radius: 20) [13:28:27 -18294.382209] SLOW spr round 16 (radius: 25) [13:29:59 -18290.308824] SLOW spr round 17 (radius: 5) [13:31:01 -18287.332663] SLOW spr round 18 (radius: 5) [13:31:56 -18287.332184] SLOW spr round 19 (radius: 10) [13:32:51 -18283.758379] SLOW spr round 20 (radius: 5) [13:33:49 -18281.849212] SLOW spr round 21 (radius: 5) [13:34:42 -18281.847811] SLOW spr round 22 (radius: 10) [13:35:35 -18281.847673] SLOW spr round 23 (radius: 15) [13:36:39 -18281.397561] SLOW spr round 24 (radius: 5) [13:37:38 -18281.397424] SLOW spr round 25 (radius: 10) [13:38:36 -18280.862632] SLOW spr round 26 (radius: 5) [13:39:32 -18280.862245] SLOW spr round 27 (radius: 10) [13:40:28 -18280.862168] SLOW spr round 28 (radius: 15) [13:41:31 -18280.862105] SLOW spr round 29 (radius: 20) [13:42:46 -18280.069976] SLOW spr round 30 (radius: 5) [13:43:46 -18280.069846] SLOW spr round 31 (radius: 10) [13:44:43 -18280.069806] SLOW spr round 32 (radius: 15) [13:45:47 -18280.069772] SLOW spr round 33 (radius: 20) [13:47:01 -18280.069743] SLOW spr round 34 (radius: 25) [13:48:31 -18279.526632] SLOW spr round 35 (radius: 5) [13:49:31 -18279.485602] SLOW spr round 36 (radius: 10) [13:50:30 -18279.484768] SLOW spr round 37 (radius: 15) [13:51:34 -18279.484758] SLOW spr round 38 (radius: 20) [13:52:49 -18279.484752] SLOW spr round 39 (radius: 25) [13:54:21 -18279.484746] Model parameter optimization (eps = 0.100000) [13:54:31] ML tree search #16, logLikelihood: -18278.499327 [13:54:31 -75668.896987] Initial branch length optimization [13:54:32 -62851.592123] Model parameter optimization (eps = 10.000000) [13:54:45 -62491.472262] AUTODETECT spr round 1 (radius: 5) [13:55:34 -43497.152057] AUTODETECT spr round 2 (radius: 10) [13:56:26 -32483.886948] AUTODETECT spr round 3 (radius: 15) [13:57:22 -27406.467247] AUTODETECT spr round 4 (radius: 20) [13:58:27 -24734.738562] AUTODETECT spr round 5 (radius: 25) [13:59:37 -22895.388132] SPR radius for FAST iterations: 25 (autodetect) [13:59:37 -22895.388132] Model parameter optimization (eps = 3.000000) [13:59:47 -22844.272181] FAST spr round 1 (radius: 25) [14:00:46 -19527.700691] FAST spr round 2 (radius: 25) [14:01:38 -18626.911860] FAST spr round 3 (radius: 25) [14:02:27 -18440.428683] FAST spr round 4 (radius: 25) [14:03:14 -18426.678397] FAST spr round 5 (radius: 25) [14:04:00 -18423.459497] FAST spr round 6 (radius: 25) [14:04:44 -18422.438552] FAST spr round 7 (radius: 25) [14:05:29 -18422.392858] Model parameter optimization (eps = 1.000000) [14:05:38 -18417.299535] SLOW spr round 1 (radius: 5) [14:06:28 -18409.947664] SLOW spr round 2 (radius: 5) [14:07:18 -18399.849005] SLOW spr round 3 (radius: 5) [14:08:09 -18398.396026] SLOW spr round 4 (radius: 5) [14:08:58 -18398.395905] SLOW spr round 5 (radius: 10) [14:09:50 -18396.083935] SLOW spr round 6 (radius: 5) [14:10:48 -18394.101367] SLOW spr round 7 (radius: 5) [14:11:43 -18392.672543] SLOW spr round 8 (radius: 5) [14:12:36 -18391.627188] SLOW spr round 9 (radius: 5) [14:13:27 -18389.117800] SLOW spr round 10 (radius: 5) [14:14:16 -18389.114631] SLOW spr round 11 (radius: 10) [14:15:09 -18389.111433] SLOW spr round 12 (radius: 15) [14:16:13 -18388.691923] SLOW spr round 13 (radius: 5) [14:17:13 -18388.691539] SLOW spr round 14 (radius: 10) [14:18:09 -18386.899528] SLOW spr round 15 (radius: 5) [14:19:04 -18386.899312] SLOW spr round 16 (radius: 10) [14:19:59 -18386.899274] SLOW spr round 17 (radius: 15) [14:21:02 -18386.482103] SLOW spr round 18 (radius: 5) [14:22:01 -18386.481216] SLOW spr round 19 (radius: 10) [14:22:57 -18386.480353] SLOW spr round 20 (radius: 15) [14:24:00 -18386.479490] SLOW spr round 21 (radius: 20) [14:25:13 -18384.972518] SLOW spr round 22 (radius: 5) [14:26:13 -18384.971659] SLOW spr round 23 (radius: 10) [14:27:10 -18384.970803] SLOW spr round 24 (radius: 15) [14:28:12 -18384.969949] SLOW spr round 25 (radius: 20) [14:29:25 -18384.969096] SLOW spr round 26 (radius: 25) [14:30:54 -18380.877150] SLOW spr round 27 (radius: 5) [14:31:56 -18378.908847] SLOW spr round 28 (radius: 5) [14:32:52 -18377.395986] SLOW spr round 29 (radius: 5) [14:33:43 -18377.393873] SLOW spr round 30 (radius: 10) [14:34:35 -18377.393661] SLOW spr round 31 (radius: 15) [14:35:37 -18376.900860] SLOW spr round 32 (radius: 5) [14:36:37 -18373.418236] SLOW spr round 33 (radius: 5) [14:37:33 -18370.976488] SLOW spr round 34 (radius: 5) [14:38:23 -18370.976177] SLOW spr round 35 (radius: 10) [14:39:15 -18370.976125] SLOW spr round 36 (radius: 15) [14:40:17 -18370.976119] SLOW spr round 37 (radius: 20) [14:41:27 -18370.213319] SLOW spr round 38 (radius: 5) [14:42:26 -18370.213318] SLOW spr round 39 (radius: 10) [14:43:22 -18370.213317] SLOW spr round 40 (radius: 15) [14:44:23 -18370.213317] SLOW spr round 41 (radius: 20) [14:45:34 -18370.213317] SLOW spr round 42 (radius: 25) [14:46:56 -18363.233821] SLOW spr round 43 (radius: 5) [14:47:56 -18363.233817] SLOW spr round 44 (radius: 10) [14:48:52 -18363.233816] SLOW spr round 45 (radius: 15) [14:49:54 -18363.233815] SLOW spr round 46 (radius: 20) [14:51:04 -18363.233815] SLOW spr round 47 (radius: 25) [14:52:26 -18363.233815] Model parameter optimization (eps = 0.100000) [14:52:33] ML tree search #17, logLikelihood: -18362.187257 [14:52:33 -76116.682220] Initial branch length optimization [14:52:34 -62708.932758] Model parameter optimization (eps = 10.000000) [14:52:47 -62385.433258] AUTODETECT spr round 1 (radius: 5) [14:53:36 -42413.239362] AUTODETECT spr round 2 (radius: 10) [14:54:28 -31365.076026] AUTODETECT spr round 3 (radius: 15) [14:55:25 -26888.877354] AUTODETECT spr round 4 (radius: 20) [14:56:36 -22245.993479] AUTODETECT spr round 5 (radius: 25) [14:58:04 -21520.608998] SPR radius for FAST iterations: 25 (autodetect) [14:58:04 -21520.608998] Model parameter optimization (eps = 3.000000) [14:58:17 -21442.510370] FAST spr round 1 (radius: 25) [14:59:17 -18548.126463] FAST spr round 2 (radius: 25) [15:00:08 -18288.521471] FAST spr round 3 (radius: 25) [15:00:56 -18258.909329] FAST spr round 4 (radius: 25) [15:01:43 -18250.215277] FAST spr round 5 (radius: 25) [15:02:28 -18250.213252] Model parameter optimization (eps = 1.000000) [15:02:33 -18249.050793] SLOW spr round 1 (radius: 5) [15:03:22 -18243.641317] SLOW spr round 2 (radius: 5) [15:04:11 -18243.470503] SLOW spr round 3 (radius: 5) [15:05:00 -18243.470293] SLOW spr round 4 (radius: 10) [15:05:51 -18242.425514] SLOW spr round 5 (radius: 5) [15:06:47 -18240.003480] SLOW spr round 6 (radius: 5) [15:07:41 -18239.345850] SLOW spr round 7 (radius: 5) [15:08:32 -18238.996185] SLOW spr round 8 (radius: 5) [15:09:22 -18238.995018] SLOW spr round 9 (radius: 10) [15:10:13 -18238.436283] SLOW spr round 10 (radius: 5) [15:11:08 -18238.436268] SLOW spr round 11 (radius: 10) [15:12:03 -18237.783022] SLOW spr round 12 (radius: 5) [15:12:58 -18237.761379] SLOW spr round 13 (radius: 10) [15:13:52 -18237.761232] SLOW spr round 14 (radius: 15) [15:14:52 -18237.084705] SLOW spr round 15 (radius: 5) [15:15:50 -18237.084665] SLOW spr round 16 (radius: 10) [15:16:45 -18237.084664] SLOW spr round 17 (radius: 15) [15:17:45 -18236.803928] SLOW spr round 18 (radius: 5) [15:18:44 -18236.803846] SLOW spr round 19 (radius: 10) [15:19:39 -18236.803843] SLOW spr round 20 (radius: 15) [15:20:39 -18236.803843] SLOW spr round 21 (radius: 20) [15:21:50 -18233.107100] SLOW spr round 22 (radius: 5) [15:22:51 -18231.818708] SLOW spr round 23 (radius: 5) [15:23:45 -18231.801829] SLOW spr round 24 (radius: 10) [15:24:38 -18230.742529] SLOW spr round 25 (radius: 5) [15:25:33 -18230.742512] SLOW spr round 26 (radius: 10) [15:26:27 -18230.742512] SLOW spr round 27 (radius: 15) [15:27:27 -18230.742512] SLOW spr round 28 (radius: 20) [15:28:36 -18230.742512] SLOW spr round 29 (radius: 25) [15:29:56 -18225.054583] SLOW spr round 30 (radius: 5) [15:30:56 -18225.052601] SLOW spr round 31 (radius: 10) [15:31:53 -18225.052508] SLOW spr round 32 (radius: 15) [15:32:53 -18225.052499] SLOW spr round 33 (radius: 20) [15:34:01 -18225.052498] SLOW spr round 34 (radius: 25) [15:35:20 -18225.052498] Model parameter optimization (eps = 0.100000) [15:35:29] ML tree search #18, logLikelihood: -18223.265520 [15:35:29 -75512.976725] Initial branch length optimization [15:35:30 -62382.957782] Model parameter optimization (eps = 10.000000) [15:35:55 -62099.798236] AUTODETECT spr round 1 (radius: 5) [15:36:43 -43099.489219] AUTODETECT spr round 2 (radius: 10) [15:37:35 -30484.483469] AUTODETECT spr round 3 (radius: 15) [15:38:32 -25480.596325] AUTODETECT spr round 4 (radius: 20) [15:39:37 -23284.448921] AUTODETECT spr round 5 (radius: 25) [15:40:49 -22816.852568] SPR radius for FAST iterations: 25 (autodetect) [15:40:49 -22816.852568] Model parameter optimization (eps = 3.000000) [15:40:58 -22742.713610] FAST spr round 1 (radius: 25) [15:42:01 -19161.593819] FAST spr round 2 (radius: 25) [15:42:52 -18433.100460] FAST spr round 3 (radius: 25) [15:43:40 -18262.370892] FAST spr round 4 (radius: 25) [15:44:26 -18216.243653] FAST spr round 5 (radius: 25) [15:45:11 -18205.302184] FAST spr round 6 (radius: 25) [15:45:54 -18205.302175] Model parameter optimization (eps = 1.000000) [15:46:06 -18197.605552] SLOW spr round 1 (radius: 5) [15:46:55 -18189.576010] SLOW spr round 2 (radius: 5) [15:47:44 -18186.627360] SLOW spr round 3 (radius: 5) [15:48:31 -18186.627013] SLOW spr round 4 (radius: 10) [15:49:22 -18183.270595] SLOW spr round 5 (radius: 5) [15:50:19 -18181.647222] SLOW spr round 6 (radius: 5) [15:51:11 -18181.645852] SLOW spr round 7 (radius: 10) [15:52:04 -18178.818738] SLOW spr round 8 (radius: 5) [15:53:01 -18178.667189] SLOW spr round 9 (radius: 5) [15:53:53 -18178.666896] SLOW spr round 10 (radius: 10) [15:54:45 -18178.118828] SLOW spr round 11 (radius: 5) [15:55:40 -18178.109536] SLOW spr round 12 (radius: 10) [15:56:35 -18177.919182] SLOW spr round 13 (radius: 5) [15:57:30 -18177.919086] SLOW spr round 14 (radius: 10) [15:58:24 -18177.919000] SLOW spr round 15 (radius: 15) [15:59:30 -18175.435729] SLOW spr round 16 (radius: 5) [16:00:28 -18175.435581] SLOW spr round 17 (radius: 10) [16:01:23 -18175.435521] SLOW spr round 18 (radius: 15) [16:02:27 -18175.435465] SLOW spr round 19 (radius: 20) [16:03:51 -18169.703380] SLOW spr round 20 (radius: 5) [16:04:50 -18169.702873] SLOW spr round 21 (radius: 10) [16:05:47 -18169.295372] SLOW spr round 22 (radius: 5) [16:06:41 -18169.295339] SLOW spr round 23 (radius: 10) [16:07:35 -18169.295309] SLOW spr round 24 (radius: 15) [16:08:39 -18169.295282] SLOW spr round 25 (radius: 20) [16:10:00 -18169.015196] SLOW spr round 26 (radius: 5) [16:10:59 -18167.781026] SLOW spr round 27 (radius: 5) [16:11:53 -18167.780984] SLOW spr round 28 (radius: 10) [16:12:46 -18167.780965] SLOW spr round 29 (radius: 15) [16:13:50 -18167.780948] SLOW spr round 30 (radius: 20) [16:15:12 -18166.227747] SLOW spr round 31 (radius: 5) [16:16:11 -18166.227717] SLOW spr round 32 (radius: 10) [16:17:08 -18166.227702] SLOW spr round 33 (radius: 15) [16:18:13 -18166.227690] SLOW spr round 34 (radius: 20) [16:19:34 -18166.227679] SLOW spr round 35 (radius: 25) [16:21:15 -18164.389824] SLOW spr round 36 (radius: 5) [16:22:16 -18157.031751] SLOW spr round 37 (radius: 5) [16:23:10 -18157.031124] SLOW spr round 38 (radius: 10) [16:24:03 -18157.031017] SLOW spr round 39 (radius: 15) [16:25:08 -18157.031002] SLOW spr round 40 (radius: 20) [16:26:31 -18157.030999] SLOW spr round 41 (radius: 25) [16:28:12 -18157.030998] Model parameter optimization (eps = 0.100000) [16:28:16] ML tree search #19, logLikelihood: -18156.904096 [16:28:16 -75909.873130] Initial branch length optimization [16:28:17 -62584.857072] Model parameter optimization (eps = 10.000000) [16:28:30 -62319.690926] AUTODETECT spr round 1 (radius: 5) [16:29:19 -42492.866904] AUTODETECT spr round 2 (radius: 10) [16:30:10 -31021.646196] AUTODETECT spr round 3 (radius: 15) [16:31:12 -24408.453710] AUTODETECT spr round 4 (radius: 20) [16:32:22 -22367.174202] AUTODETECT spr round 5 (radius: 25) [16:33:38 -21408.127153] SPR radius for FAST iterations: 25 (autodetect) [16:33:38 -21408.127153] Model parameter optimization (eps = 3.000000) [16:33:49 -21373.114109] FAST spr round 1 (radius: 25) [16:34:50 -18491.382073] FAST spr round 2 (radius: 25) [16:35:42 -18277.696017] FAST spr round 3 (radius: 25) [16:36:33 -18257.185950] FAST spr round 4 (radius: 25) [16:37:22 -18253.013001] FAST spr round 5 (radius: 25) [16:38:09 -18253.012610] Model parameter optimization (eps = 1.000000) [16:38:17 -18250.939197] SLOW spr round 1 (radius: 5) [16:39:08 -18244.704410] SLOW spr round 2 (radius: 5) [16:40:01 -18243.661974] SLOW spr round 3 (radius: 5) [16:40:53 -18243.661447] SLOW spr round 4 (radius: 10) [16:41:46 -18241.330290] SLOW spr round 5 (radius: 5) [16:42:45 -18240.447228] SLOW spr round 6 (radius: 5) [16:43:37 -18240.447193] SLOW spr round 7 (radius: 10) [16:44:30 -18240.447169] SLOW spr round 8 (radius: 15) [16:45:35 -18239.204464] SLOW spr round 9 (radius: 5) [16:46:33 -18239.200413] SLOW spr round 10 (radius: 10) [16:47:29 -18239.077057] SLOW spr round 11 (radius: 5) [16:48:25 -18239.076942] SLOW spr round 12 (radius: 10) [16:49:19 -18239.076907] SLOW spr round 13 (radius: 15) [16:50:24 -18239.076888] SLOW spr round 14 (radius: 20) [16:51:40 -18235.133375] SLOW spr round 15 (radius: 5) [16:52:42 -18230.811344] SLOW spr round 16 (radius: 5) [16:53:39 -18227.345403] SLOW spr round 17 (radius: 5) [16:54:31 -18227.343217] SLOW spr round 18 (radius: 10) [16:55:24 -18225.349170] SLOW spr round 19 (radius: 5) [16:56:23 -18221.571847] SLOW spr round 20 (radius: 5) [16:57:15 -18221.571347] SLOW spr round 21 (radius: 10) [16:58:07 -18221.370073] SLOW spr round 22 (radius: 5) [16:59:04 -18220.597729] SLOW spr round 23 (radius: 5) [16:59:58 -18218.979055] SLOW spr round 24 (radius: 5) [17:00:48 -18218.977719] SLOW spr round 25 (radius: 10) [17:01:40 -18218.977654] SLOW spr round 26 (radius: 15) [17:02:45 -18217.365466] SLOW spr round 27 (radius: 5) [17:03:43 -18217.365170] SLOW spr round 28 (radius: 10) [17:04:39 -18217.365130] SLOW spr round 29 (radius: 15) [17:05:44 -18171.720318] SLOW spr round 30 (radius: 5) [17:06:44 -18161.514979] SLOW spr round 31 (radius: 5) [17:07:38 -18161.258205] SLOW spr round 32 (radius: 5) [17:08:29 -18161.258196] SLOW spr round 33 (radius: 10) [17:09:22 -18161.258196] SLOW spr round 34 (radius: 15) [17:10:26 -18161.258196] SLOW spr round 35 (radius: 20) [17:11:39 -18161.258194] SLOW spr round 36 (radius: 25) [17:13:03 -18160.496607] SLOW spr round 37 (radius: 5) [17:14:03 -18160.496579] SLOW spr round 38 (radius: 10) [17:15:00 -18160.496578] SLOW spr round 39 (radius: 15) [17:16:03 -18160.496578] SLOW spr round 40 (radius: 20) [17:17:17 -18160.496578] SLOW spr round 41 (radius: 25) [17:18:41 -18160.496578] Model parameter optimization (eps = 0.100000) [17:18:45] ML tree search #20, logLikelihood: -18160.279518 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.211606,0.925015) (0.116531,0.486107) (0.258786,0.624769) (0.413077,1.418461) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -18092.068703 AIC score: 39842.137406 / AICc score: 6733982.137406 / BIC score: 43375.446488 Free parameters (model + branch lengths): 1829 WARNING: Number of free parameters (K=1829) is larger than alignment size (n=51). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9HBL0/3_mltree/Q9HBL0.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9HBL0/3_mltree/Q9HBL0.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9HBL0/3_mltree/Q9HBL0.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9HBL0/3_mltree/Q9HBL0.raxml.log Analysis started: 05-Jul-2021 23:12:36 / finished: 06-Jul-2021 16:31:22 Elapsed time: 62325.928 seconds Consumed energy: 5073.222 Wh (= 25 km in an electric car, or 127 km with an e-scooter!)