RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 03-Jun-2021 02:32:27 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9HAN9/2_msa/Q9HAN9_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9HAN9/3_mltree/Q9HAN9.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9HAN9/4_raxmlng_ancestral/Q9HAN9 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622676747 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9HAN9/2_msa/Q9HAN9_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 279 sites WARNING: Sequences sp_Q8BNJ3_NMNA2_MOUSE_10090 and tr_A0A1U7Q6Z4_A0A1U7Q6Z4_MESAU_10036 are exactly identical! WARNING: Sequences tr_G1S8Q0_G1S8Q0_NOMLE_61853 and tr_A0A0A0MXL4_A0A0A0MXL4_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1S8Q0_G1S8Q0_NOMLE_61853 and sp_Q5RBL5_NMNA2_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1S8Q0_G1S8Q0_NOMLE_61853 and tr_A0A1D5QT75_A0A1D5QT75_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1S8Q0_G1S8Q0_NOMLE_61853 and tr_G7NXG5_G7NXG5_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1S8Q0_G1S8Q0_NOMLE_61853 and tr_A0A2I3NCD3_A0A2I3NCD3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1S8Q0_G1S8Q0_NOMLE_61853 and tr_A0A0D9RJM6_A0A0D9RJM6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1S8Q0_G1S8Q0_NOMLE_61853 and tr_A0A2K5MD08_A0A2K5MD08_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1S8Q0_G1S8Q0_NOMLE_61853 and tr_A0A2K6DT59_A0A2K6DT59_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1S8Q0_G1S8Q0_NOMLE_61853 and tr_A0A2K5ZXG9_A0A2K5ZXG9_MANLE_9568 are exactly identical! WARNING: Sequences tr_B6Q9F7_B6Q9F7_TALMQ_441960 and tr_A0A093VKU3_A0A093VKU3_TALMA_1077442 are exactly identical! WARNING: Sequences tr_B2W928_B2W928_PYRTR_426418 and tr_A0A2W1GPZ6_A0A2W1GPZ6_9PLEO_45151 are exactly identical! WARNING: Sequences tr_A0A2I2YBT2_A0A2I2YBT2_GORGO_9595 and sp_Q9HAN9_NMNA1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZG10_A0A2I2ZG10_GORGO_9595 and tr_H2Q0R3_H2Q0R3_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZG10_A0A2I2ZG10_GORGO_9595 and sp_Q9BZQ4_NMNA2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZG10_A0A2I2ZG10_GORGO_9595 and tr_A0A2R8ZV83_A0A2R8ZV83_PANPA_9597 are exactly identical! WARNING: Sequences tr_C0NRV0_C0NRV0_AJECG_447093 and tr_F0UTW6_F0UTW6_AJEC8_544711 are exactly identical! WARNING: Sequences tr_Q1K610_Q1K610_NEUCR_367110 and tr_G4UYZ3_G4UYZ3_NEUT9_510952 are exactly identical! WARNING: Sequences tr_B8NP82_B8NP82_ASPFN_332952 and tr_Q2UMZ5_Q2UMZ5_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8NP82_B8NP82_ASPFN_332952 and tr_A0A1S9D6D4_A0A1S9D6D4_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_A0A179UCM1_A0A179UCM1_BLAGS_559298 and tr_C5GGZ1_C5GGZ1_AJEDR_559297 are exactly identical! WARNING: Sequences tr_J9NZG3_J9NZG3_CANLF_9615 and tr_A0A337S342_A0A337S342_FELCA_9685 are exactly identical! WARNING: Sequences tr_K7BBC4_K7BBC4_PANTR_9598 and tr_A0A2R9C2A2_A0A2R9C2A2_PANPA_9597 are exactly identical! WARNING: Sequences tr_F9FL49_F9FL49_FUSOF_660025 and tr_X0DJ93_X0DJ93_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9FL49_F9FL49_FUSOF_660025 and tr_A0A2H3HVW0_A0A2H3HVW0_FUSOX_327505 are exactly identical! WARNING: Sequences tr_F9FL49_F9FL49_FUSOF_660025 and tr_A0A2K0WTM5_A0A2K0WTM5_GIBNY_42673 are exactly identical! WARNING: Sequences tr_A0A0K0IQ77_A0A0K0IQ77_BRUMA_6279 and tr_A0A0R3QNE8_A0A0R3QNE8_9BILA_42155 are exactly identical! WARNING: Sequences tr_A2QWV6_A2QWV6_ASPNC_425011 and tr_G7XG67_G7XG67_ASPKW_1033177 are exactly identical! WARNING: Sequences tr_A2QWV6_A2QWV6_ASPNC_425011 and tr_G3YAQ3_G3YAQ3_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A2QWV6_A2QWV6_ASPNC_425011 and tr_A0A100IJL6_A0A100IJL6_ASPNG_5061 are exactly identical! WARNING: Sequences tr_A2QWV6_A2QWV6_ASPNC_425011 and tr_A0A146FSJ7_A0A146FSJ7_9EURO_1069201 are exactly identical! WARNING: Sequences tr_A2QWV6_A2QWV6_ASPNC_425011 and tr_A0A1L9N1G7_A0A1L9N1G7_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A2QWV6_A2QWV6_ASPNC_425011 and tr_A0A1L9V247_A0A1L9V247_9EURO_767769 are exactly identical! WARNING: Sequences tr_A2QWV6_A2QWV6_ASPNC_425011 and tr_A0A317WC28_A0A317WC28_9EURO_1448314 are exactly identical! WARNING: Sequences tr_A2QWV6_A2QWV6_ASPNC_425011 and tr_A0A319BEU2_A0A319BEU2_9EURO_1450533 are exactly identical! WARNING: Sequences tr_F4P9A9_F4P9A9_BATDJ_684364 and tr_A0A177WXM9_A0A177WXM9_BATDE_403673 are exactly identical! WARNING: Sequences tr_F9X138_F9X138_ZYMTI_336722 and tr_A0A0F4GJR3_A0A0F4GJR3_9PEZI_1047168 are exactly identical! WARNING: Sequences tr_F9X138_F9X138_ZYMTI_336722 and tr_A0A1X7RFJ1_A0A1X7RFJ1_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_G2YSF8_G2YSF8_BOTF4_999810 and tr_M7UCS4_M7UCS4_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_F2SDP5_F2SDP5_TRIRC_559305 and tr_A0A178EV24_A0A178EV24_TRIRU_5551 are exactly identical! WARNING: Sequences tr_S0DPR4_S0DPR4_GIBF5_1279085 and tr_A0A365N7A8_A0A365N7A8_GIBIN_948311 are exactly identical! WARNING: Sequences tr_V2XDT1_V2XDT1_MONRO_1381753 and tr_A0A0W0FVS1_A0A0W0FVS1_9AGAR_221103 are exactly identical! WARNING: Sequences tr_A0A067F7D5_A0A067F7D5_CITSI_2711 and tr_V4WGN9_V4WGN9_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A078FIP7_A0A078FIP7_BRANA_3708 and tr_A0A0D3B3A6_A0A0D3B3A6_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078GVG6_A0A078GVG6_BRANA_3708 and tr_A0A0D3EBH4_A0A0D3EBH4_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A094F846_A0A094F846_9PEZI_1420912 and tr_A0A1B8GPI4_A0A1B8GPI4_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A0F0I8Z4_A0A0F0I8Z4_ASPPU_1403190 and tr_A0A2G7FFR6_A0A2G7FFR6_9EURO_656916 are exactly identical! WARNING: Sequences tr_A0A0M8PF19_A0A0M8PF19_9EURO_229535 and tr_A0A0G4PA23_A0A0G4PA23_PENCA_1429867 are exactly identical! WARNING: Sequences tr_A0A0M8PF19_A0A0M8PF19_9EURO_229535 and tr_A0A117NNJ2_A0A117NNJ2_9EURO_48697 are exactly identical! WARNING: Sequences tr_A0A0M8PF19_A0A0M8PF19_9EURO_229535 and tr_A0A1V6NAP1_A0A1V6NAP1_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A0M8PF19_A0A0M8PF19_9EURO_229535 and tr_A0A1V6Q9Q3_A0A1V6Q9Q3_9EURO_60172 are exactly identical! WARNING: Sequences tr_A0A0A1N7E5_A0A0A1N7E5_9FUNG_58291 and tr_A0A367JQJ3_A0A367JQJ3_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A0V0RYP1_A0A0V0RYP1_9BILA_6336 and tr_A0A0V1D4H8_A0A0V1D4H8_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0RYP1_A0A0V0RYP1_9BILA_6336 and tr_A0A0V0WMJ8_A0A0V0WMJ8_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0RYP1_A0A0V0RYP1_9BILA_6336 and tr_A0A0V0VFL1_A0A0V0VFL1_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0RYP1_A0A0V0RYP1_9BILA_6336 and tr_A0A0V1PF43_A0A0V1PF43_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0RYP1_A0A0V0RYP1_9BILA_6336 and tr_A0A0V0UIB8_A0A0V0UIB8_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1N618_A0A0V1N618_9BILA_268474 and tr_A0A0V1HW01_A0A0V1HW01_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0P1BEQ1_A0A0P1BEQ1_9BASI_401625 and tr_A0A316VP31_A0A316VP31_9BASI_1522189 are exactly identical! WARNING: Sequences tr_A0A0E0SH88_A0A0E0SH88_GIBZE_229533 and tr_A0A2T4GCI8_A0A2T4GCI8_FUSCU_5516 are exactly identical! WARNING: Sequences tr_A0A164UM13_A0A164UM13_9HOMO_1314777 and tr_A0A166IKN1_A0A166IKN1_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A194W0C2_A0A194W0C2_9PEZI_105487 and tr_A0A194UN41_A0A194UN41_9PEZI_694573 are exactly identical! WARNING: Sequences tr_A0A1R3RWH6_A0A1R3RWH6_ASPC5_602072 and tr_A0A317WBK8_A0A317WBK8_9EURO_1450535 are exactly identical! WARNING: Sequences tr_A0A1V8UAM0_A0A1V8UAM0_9PEZI_1974281 and tr_A0A1V8TPT5_A0A1V8TPT5_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A2H3D5T0_A0A2H3D5T0_ARMGA_47427 and tr_A0A2H3BTJ8_A0A2H3BTJ8_9AGAR_1076256 are exactly identical! WARNING: Sequences tr_A0A2H3D5T0_A0A2H3D5T0_ARMGA_47427 and tr_A0A284QN30_A0A284QN30_9AGAR_47428 are exactly identical! WARNING: Sequences tr_A0A2D0SGE9_A0A2D0SGE9_ICTPU_7998 and tr_A0A2D0SGF2_A0A2D0SGF2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SGE9_A0A2D0SGE9_ICTPU_7998 and tr_A0A2D0SH34_A0A2D0SH34_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SGE9_A0A2D0SGE9_ICTPU_7998 and tr_A0A2D0SHN7_A0A2D0SHN7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2B7XHQ9_A0A2B7XHQ9_9EURO_2060905 and tr_A0A1J9PWB3_A0A1J9PWB3_9EURO_1658174 are exactly identical! WARNING: Sequences tr_A0A2S7Q4I6_A0A2S7Q4I6_9HELO_2070414 and tr_A0A2S7R3E9_A0A2S7R3E9_9HELO_2070412 are exactly identical! WARNING: Sequences tr_A0A2G4SGG1_A0A2G4SGG1_9FUNG_1340429 and tr_A0A367JB40_A0A367JB40_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A2A3E2M1_A0A2A3E2M1_APICC_94128 and tr_A0A2A3E466_A0A2A3E466_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A2U4CQX7_A0A2U4CQX7_TURTR_9739 and tr_A0A2Y9PQ92_A0A2Y9PQ92_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4CQX7_A0A2U4CQX7_TURTR_9739 and tr_A0A383ZJJ3_A0A383ZJJ3_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A319C006_A0A319C006_9EURO_1448315 and tr_A0A2V5IIS5_A0A2V5IIS5_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A319C006_A0A319C006_9EURO_1448315 and tr_A0A2V5GS82_A0A2V5GS82_9EURO_1450538 are exactly identical! WARNING: Duplicate sequences found: 77 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9HAN9/4_raxmlng_ancestral/Q9HAN9.raxml.reduced.phy Alignment comprises 1 partitions and 279 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 279 Gaps: 16.44 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9HAN9/4_raxmlng_ancestral/Q9HAN9.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9HAN9/3_mltree/Q9HAN9.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 70 / 5600 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -108293.702820 [00:00:00 -108293.702820] Initial branch length optimization [00:00:00 -107306.008861] Model parameter optimization (eps = 0.100000) [00:00:30] Tree #1, final logLikelihood: -107124.645543 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.169319,0.194547) (0.229427,0.324430) (0.266536,0.792931) (0.334718,2.035392) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9HAN9/4_raxmlng_ancestral/Q9HAN9.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9HAN9/4_raxmlng_ancestral/Q9HAN9.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9HAN9/4_raxmlng_ancestral/Q9HAN9.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9HAN9/4_raxmlng_ancestral/Q9HAN9.raxml.log Analysis started: 03-Jun-2021 02:32:27 / finished: 03-Jun-2021 02:33:00 Elapsed time: 33.026 seconds Consumed energy: 2.350 Wh