RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 09-Jul-2021 19:50:29 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H694/2_msa/Q9H694_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H694/3_mltree/Q9H694 --seed 2 --threads 1 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), NONE/sequential

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H694/2_msa/Q9H694_trimmed_msa.fasta
[00:00:00] Loaded alignment with 632 taxa and 53 sites

WARNING: Sequences tr_A0A1D5P233_A0A1D5P233_CHICK_9031 and tr_G1NB80_G1NB80_MELGA_9103 are exactly identical!
WARNING: Sequences tr_A0A1D5P233_A0A1D5P233_CHICK_9031 and tr_H9G4T1_H9G4T1_ANOCA_28377 are exactly identical!
WARNING: Sequences tr_A0A1D5P233_A0A1D5P233_CHICK_9031 and tr_U3IIK7_U3IIK7_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_A0A1D5P233_A0A1D5P233_CHICK_9031 and tr_A0A151N6H0_A0A151N6H0_ALLMI_8496 are exactly identical!
WARNING: Sequences tr_A0A1D5P233_A0A1D5P233_CHICK_9031 and tr_A0A0Q3TTJ9_A0A0Q3TTJ9_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_A0A1D5P233_A0A1D5P233_CHICK_9031 and tr_A0A091IX68_A0A091IX68_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_A0A1D5P233_A0A1D5P233_CHICK_9031 and tr_A0A093PED9_A0A093PED9_9PASS_328815 are exactly identical!
WARNING: Sequences tr_A0A1D5P233_A0A1D5P233_CHICK_9031 and tr_A0A091VUA3_A0A091VUA3_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A1D5P233_A0A1D5P233_CHICK_9031 and tr_A0A087QIB8_A0A087QIB8_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A1D5P233_A0A1D5P233_CHICK_9031 and tr_A0A093HMT9_A0A093HMT9_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A0A1D5P233_A0A1D5P233_CHICK_9031 and tr_A0A091WLD3_A0A091WLD3_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A1D5P233_A0A1D5P233_CHICK_9031 and tr_A0A099ZTR0_A0A099ZTR0_TINGU_94827 are exactly identical!
WARNING: Sequences tr_A0A1D5P233_A0A1D5P233_CHICK_9031 and tr_A0A091GAM0_A0A091GAM0_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A1D5P233_A0A1D5P233_CHICK_9031 and tr_A0A0A0ACR1_A0A0A0ACR1_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A1D5P233_A0A1D5P233_CHICK_9031 and tr_A0A091I6S9_A0A091I6S9_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A1D5P233_A0A1D5P233_CHICK_9031 and tr_A0A1U8DQ04_A0A1U8DQ04_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A1D5P233_A0A1D5P233_CHICK_9031 and tr_A0A226MXS7_A0A226MXS7_CALSU_9009 are exactly identical!
WARNING: Sequences tr_A0A1D5P233_A0A1D5P233_CHICK_9031 and tr_A0A226P4F0_A0A226P4F0_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and sp_Q99MQ1_BICC1_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_H2LKZ1_H2LKZ1_ORYLA_8090 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_G1RNV6_G1RNV6_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_G1P453_G1P453_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_G3H4M2_G3H4M2_CRIGR_10029 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_G3QRW0_G3QRW0_GORGO_9595 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_H2NAU7_H2NAU7_PONAB_9601 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_G1MUX7_G1MUX7_MELGA_9103 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_G1T5Z1_G1T5Z1_RABIT_9986 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_F1PUI0_F1PUI0_CANLF_9615 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A2I3SD72_A0A2I3SD72_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_F6Z7V1_F6Z7V1_ORNAN_9258 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_F7DSN6_F7DSN6_MONDO_13616 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_F6ZXP4_F6ZXP4_HORSE_9796 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_W5P1S7_W5P1S7_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_D3ZDJ9_D3ZDJ9_RAT_10116 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A3B5QWX7_A0A3B5QWX7_XIPMA_8083 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_I3IVZ9_I3IVZ9_ORENI_8128 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_I3LW33_I3LW33_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_H0WG55_H0WG55_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_H0VTP7_H0VTP7_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and sp_Q9H694_BICC1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_F7EBY3_F7EBY3_MACMU_9544 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_G5BLB8_G5BLB8_HETGA_10181 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_G3P6Q3_G3P6Q3_GASAC_69293 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_G3T0K5_G3T0K5_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_G3WD45_G3WD45_SARHA_9305 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_H0Z5B9_H0Z5B9_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_F6SFQ4_F6SFQ4_CALJA_9483 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A287A174_A0A287A174_PIG_9823 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_G1M433_G1M433_AILME_9646 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_G7PDF3_G7PDF3_MACFA_9541 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_F1MDL5_F1MDL5_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_L5KFQ5_L5KFQ5_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_M3W5H8_M3W5H8_FELCA_9685 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_U3JHT5_U3JHT5_FICAL_59894 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_U3J6C5_U3J6C5_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A3B1J584_A0A3B1J584_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_W5MHJ8_W5MHJ8_LEPOC_7918 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A087YKC9_A0A087YKC9_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A096P576_A0A096P576_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A091E385_A0A091E385_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A0D9R4M7_A0A0D9R4M7_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A151MPL5_A0A151MPL5_ALLMI_8496 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A0Q3MJK6_A0A0Q3MJK6_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A091FBR0_A0A091FBR0_CORBR_85066 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A091J436_A0A091J436_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A093PGR1_A0A093PGR1_9PASS_328815 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A091W790_A0A091W790_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A087QMP6_A0A087QMP6_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A093GNX8_A0A093GNX8_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A091XCN6_A0A091XCN6_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A099YXT3_A0A099YXT3_TINGU_94827 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A091FK24_A0A091FK24_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A093GMQ4_A0A093GMQ4_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A091IG71_A0A091IG71_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A1S3W3V8_A0A1S3W3V8_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A1S3F9X0_A0A1S3F9X0_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A1S3N484_A0A1S3N484_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A1U7U3L7_A0A1U7U3L7_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A1U7SFK3_A0A1U7SFK3_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A1U7QMQ5_A0A1U7QMQ5_MESAU_10036 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A2I4AN30_A0A2I4AN30_9TELE_52670 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A060WHP5_A0A060WHP5_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A060X1W4_A0A060X1W4_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A218U932_A0A218U932_9PASE_299123 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A226MHB1_A0A226MHB1_CALSU_9009 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A226P4I6_A0A226P4I6_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A2D0SA77_A0A2D0SA77_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A2D0SA78_A0A2D0SA78_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A2D0SA80_A0A2D0SA80_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A2K5KW74_A0A2K5KW74_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A2K6ASH4_A0A2K6ASH4_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A2K5ZV19_A0A2K5ZV19_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A2R9B6S8_A0A2R9B6S8_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A2U4BE69_A0A2U4BE69_TURTR_9739 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A2U3VMA8_A0A2U3VMA8_ODORO_9708 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A2U3XVZ4_A0A2U3XVZ4_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A2U9CC29_A0A2U9CC29_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A2Y9D8F6_A0A2Y9D8F6_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A2Y9J2H3_A0A2Y9J2H3_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A2Y9MG81_A0A2Y9MG81_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A2Y9S5N4_A0A2Y9S5N4_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A384CI63_A0A384CI63_URSMA_29073 are exactly identical!
WARNING: Sequences tr_A0A1D5PXG4_A0A1D5PXG4_CHICK_9031 and tr_A0A383Z700_A0A383Z700_BALAS_310752 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_M3Y532_M3Y532_MUSPF_9669 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A2I3GJ34_A0A2I3GJ34_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A2I3GRF8_A0A2I3GRF8_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_G1NYA2_G1NYA2_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_G3QDP6_G3QDP6_GORGO_9595 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_H2PSV6_H2PSV6_PONAB_9601 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_G1KAM7_G1KAM7_ANOCA_28377 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_G1TB53_G1TB53_RABIT_9986 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_F1PSA5_F1PSA5_CANLF_9615 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_K7BDT6_K7BDT6_PANTR_9598 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_F6SIL0_F6SIL0_MONDO_13616 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_F6V0D6_F6V0D6_HORSE_9796 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_W5PN36_W5PN36_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_H0WII5_H0WII5_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and sp_Q68DC2_ANKS6_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_F7A2F6_F7A2F6_MACMU_9544 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_G3WZA3_G3WZA3_SARHA_9305 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_H0ZDW1_H0ZDW1_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_F7GK22_F7GK22_CALJA_9483 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_F1SSF0_F1SSF0_PIG_9823 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_G7PRV1_G7PRV1_MACFA_9541 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_F1MNU9_F1MNU9_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_L5KPX3_L5KPX3_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_M3WAB1_M3WAB1_FELCA_9685 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_U3JRM4_U3JRM4_FICAL_59894 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_U3J3H5_U3J3H5_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A096P121_A0A096P121_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A0D9RF71_A0A0D9RF71_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A151NCT2_A0A151NCT2_ALLMI_8496 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A0Q3MJM0_A0A0Q3MJM0_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A099Z8C2_A0A099Z8C2_TINGU_94827 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A2I0MXX6_A0A2I0MXX6_COLLI_8932 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A1S2ZWA7_A0A1S2ZWA7_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A1U7TF95_A0A1U7TF95_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A3Q0GCV8_A0A3Q0GCV8_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A1V4J836_A0A1V4J836_PATFA_372326 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A218VAB3_A0A218VAB3_9PASE_299123 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A226N855_A0A226N855_CALSU_9009 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A226P2W1_A0A226P2W1_COLVI_9014 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A2K5LHJ6_A0A2K5LHJ6_CERAT_9531 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A2K6DGB4_A0A2K6DGB4_MACNE_9545 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A2K6AKQ2_A0A2K6AKQ2_MANLE_9568 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A2R9CEX3_A0A2R9CEX3_PANPA_9597 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A2U4CGW7_A0A2U4CGW7_TURTR_9739 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A2U3VDB8_A0A2U3VDB8_ODORO_9708 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A2U3YNI7_A0A2U3YNI7_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A2Y9DDV6_A0A2Y9DDV6_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A2Y9J8S4_A0A2Y9J8S4_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A2Y9QEK8_A0A2Y9QEK8_DELLE_9749 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A2Y9SU89_A0A2Y9SU89_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A384DGT3_A0A384DGT3_URSMA_29073 are exactly identical!
WARNING: Sequences tr_E1BQM0_E1BQM0_CHICK_9031 and tr_A0A384BBM2_A0A384BBM2_BALAS_310752 are exactly identical!
WARNING: Sequences sp_Q6GQX6_ANKS6_MOUSE_10090 and tr_G3H7G5_G3H7G5_CRIGR_10029 are exactly identical!
WARNING: Sequences sp_Q6GQX6_ANKS6_MOUSE_10090 and sp_P0C0T2_ANKS6_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q6GQX6_ANKS6_MOUSE_10090 and tr_A0A287DD23_A0A287DD23_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_Q6GQX6_ANKS6_MOUSE_10090 and tr_H0VI29_H0VI29_CAVPO_10141 are exactly identical!
WARNING: Sequences sp_Q6GQX6_ANKS6_MOUSE_10090 and tr_G5AZ19_G5AZ19_HETGA_10181 are exactly identical!
WARNING: Sequences sp_Q6GQX6_ANKS6_MOUSE_10090 and tr_A0A091CPG2_A0A091CPG2_FUKDA_885580 are exactly identical!
WARNING: Sequences sp_Q6GQX6_ANKS6_MOUSE_10090 and tr_A0A1S3FQ46_A0A1S3FQ46_DIPOR_10020 are exactly identical!
WARNING: Sequences sp_Q6GQX6_ANKS6_MOUSE_10090 and tr_A0A3Q0D5L1_A0A3Q0D5L1_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q24009_BICC_DROME_7227 and tr_A0A1W4WAQ7_A0A1W4WAQ7_DROFC_30025 are exactly identical!
WARNING: Sequences tr_H2LL01_H2LL01_ORYLA_8090 and tr_I3KNE5_I3KNE5_ORENI_8128 are exactly identical!
WARNING: Sequences tr_H2LL01_H2LL01_ORYLA_8090 and tr_H2S848_H2S848_TAKRU_31033 are exactly identical!
WARNING: Sequences tr_H2LL01_H2LL01_ORYLA_8090 and tr_H3CTL6_H3CTL6_TETNG_99883 are exactly identical!
WARNING: Sequences tr_H2LL01_H2LL01_ORYLA_8090 and tr_A0A087Y2F1_A0A087Y2F1_POEFO_48698 are exactly identical!
WARNING: Sequences tr_H2LL01_H2LL01_ORYLA_8090 and tr_A0A1S3QAL4_A0A1S3QAL4_SALSA_8030 are exactly identical!
WARNING: Sequences tr_H2LL01_H2LL01_ORYLA_8090 and tr_A0A060VWX9_A0A060VWX9_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_B4JEC2_B4JEC2_DROGR_7222 and tr_B4K248_B4K248_DROGR_7222 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_G3HS56_G3HS56_CRIGR_10029 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_F7AG42_F7AG42_MONDO_13616 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_F7BQ25_F7BQ25_HORSE_9796 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and sp_Q5M9H0_ANKS3_RAT_10116 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_I3M2F9_I3M2F9_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_H0XRY2_H0XRY2_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_H0UUB2_H0UUB2_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_F6RYC1_F6RYC1_MACMU_9544 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_G5C0K3_G5C0K3_HETGA_10181 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_G3W146_G3W146_SARHA_9305 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_G1L4S9_G1L4S9_AILME_9646 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_G7Q0E6_G7Q0E6_MACFA_9541 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_E1BFT9_E1BFT9_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_M3W2F3_M3W2F3_FELCA_9685 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_A0A096NLG0_A0A096NLG0_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_A0A091DPS1_A0A091DPS1_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_A0A0D9R9K1_A0A0D9R9K1_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_A0A093G786_A0A093G786_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_A0A3Q0D9K7_A0A3Q0D9K7_MESAU_10036 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_A0A2K5N9B2_A0A2K5N9B2_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_A0A2K6D801_A0A2K6D801_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_A0A2K5ZES6_A0A2K5ZES6_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_A0A2U4ATR4_A0A2U4ATR4_TURTR_9739 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_A0A2U3Z565_A0A2U3Z565_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_A0A2Y9PYC5_A0A2Y9PYC5_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_A0A2Y9FMK3_A0A2Y9FMK3_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_A0A384CKQ8_A0A384CKQ8_URSMA_29073 are exactly identical!
WARNING: Sequences tr_A0A2I3G068_A0A2I3G068_NOMLE_61853 and tr_A0A384A2J4_A0A384A2J4_BALAS_310752 are exactly identical!
WARNING: Sequences tr_G1PQK4_G1PQK4_MYOLU_59463 and tr_E2R5X1_E2R5X1_CANLF_9615 are exactly identical!
WARNING: Sequences tr_G1PQK4_G1PQK4_MYOLU_59463 and tr_L5KIU8_L5KIU8_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_A0A2I2Y617_A0A2I2Y617_GORGO_9595 and tr_K7B882_K7B882_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2Y617_A0A2I2Y617_GORGO_9595 and sp_Q6ZW76_ANKS3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I2Y617_A0A2I2Y617_GORGO_9595 and tr_F6QU63_F6QU63_CALJA_9483 are exactly identical!
WARNING: Sequences tr_A0A2I2Y617_A0A2I2Y617_GORGO_9595 and tr_F1RK68_F1RK68_PIG_9823 are exactly identical!
WARNING: Sequences tr_A0A2I2Y617_A0A2I2Y617_GORGO_9595 and tr_A0A2R9C0R4_A0A2R9C0R4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I2Y617_A0A2I2Y617_GORGO_9595 and tr_A0A2U3W5C8_A0A2U3W5C8_ODORO_9708 are exactly identical!
WARNING: Sequences tr_H9G5Q6_H9G5Q6_ANOCA_28377 and tr_A0A1L8FIS1_A0A1L8FIS1_XENLA_8355 are exactly identical!
WARNING: Sequences tr_Q29KC7_Q29KC7_DROPS_46245 and tr_B4H9D2_B4H9D2_DROPE_7234 are exactly identical!
WARNING: Sequences tr_Q21593_Q21593_CAEEL_6239 and tr_A0A2H2HYF2_A0A2H2HYF2_CAEJA_281687 are exactly identical!
WARNING: Sequences tr_M4AX06_M4AX06_XIPMA_8083 and tr_I3KVL5_I3KVL5_ORENI_8128 are exactly identical!
WARNING: Sequences tr_A0A088AW86_A0A088AW86_APIME_7460 and tr_A0A2A3EFG7_A0A2A3EFG7_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A158NH18_A0A158NH18_ATTCE_12957 and tr_A0A151XDL7_A0A151XDL7_9HYME_64791 are exactly identical!
WARNING: Sequences tr_A0A158NH18_A0A158NH18_ATTCE_12957 and tr_A0A151J205_A0A151J205_9HYME_471704 are exactly identical!
WARNING: Sequences tr_A0A158NH18_A0A158NH18_ATTCE_12957 and tr_A0A195FNS9_A0A195FNS9_9HYME_34720 are exactly identical!
WARNING: Sequences tr_A0A158NH18_A0A158NH18_ATTCE_12957 and tr_A0A195D177_A0A195D177_9HYME_456900 are exactly identical!
WARNING: Sequences tr_H2T9W2_H2T9W2_TAKRU_31033 and tr_H3DI12_H3DI12_TETNG_99883 are exactly identical!
WARNING: Sequences tr_H2T9W2_H2T9W2_TAKRU_31033 and tr_H3DPY1_H3DPY1_TETNG_99883 are exactly identical!
WARNING: Sequences tr_A0A0E0IKA7_A0A0E0IKA7_ORYNI_4536 and tr_A0A0E0ESL3_A0A0E0ESL3_9ORYZ_40149 are exactly identical!
WARNING: Sequences tr_A0A0E0JA95_A0A0E0JA95_ORYNI_4536 and tr_I1R6D2_I1R6D2_ORYGL_4538 are exactly identical!
WARNING: Sequences tr_A0A0E0JA95_A0A0E0JA95_ORYNI_4536 and tr_A0A0E0RH90_A0A0E0RH90_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A0A0E0JA95_A0A0E0JA95_ORYNI_4536 and tr_A0A0E0BSP4_A0A0E0BSP4_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_A0A0E0JA95_A0A0E0JA95_ORYNI_4536 and tr_Q2QQY1_Q2QQY1_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_A0A0I9R336_A0A0I9R336_BRUMA_6279 and tr_A0A158PSS7_A0A158PSS7_BRUPA_6280 are exactly identical!
WARNING: Sequences tr_A0A0I9R336_A0A0I9R336_BRUMA_6279 and tr_A0A0R3R1Q3_A0A0R3R1Q3_9BILA_42155 are exactly identical!
WARNING: Sequences tr_A0A0K0JHK3_A0A0K0JHK3_BRUMA_6279 and tr_A0A044TEI6_A0A044TEI6_ONCVO_6282 are exactly identical!
WARNING: Sequences tr_A0A0K0JHK3_A0A0K0JHK3_BRUMA_6279 and tr_A0A0N4TK33_A0A0N4TK33_BRUPA_6280 are exactly identical!
WARNING: Sequences tr_A0A0K0JHK3_A0A0K0JHK3_BRUMA_6279 and tr_A0A0R3S2J0_A0A0R3S2J0_9BILA_1147741 are exactly identical!
WARNING: Sequences tr_A0A0K0JHK3_A0A0K0JHK3_BRUMA_6279 and tr_A0A183H958_A0A183H958_9BILA_387005 are exactly identical!
WARNING: Sequences tr_A0A0K0JHK3_A0A0K0JHK3_BRUMA_6279 and tr_A0A182DY89_A0A182DY89_ONCOC_42157 are exactly identical!
WARNING: Sequences tr_A0A0K0JHK3_A0A0K0JHK3_BRUMA_6279 and tr_A0A1I7W0Q2_A0A1I7W0Q2_LOALO_7209 are exactly identical!
WARNING: Sequences tr_E5S657_E5S657_TRISP_6334 and tr_A0A0V0S869_A0A0V0S869_9BILA_6336 are exactly identical!
WARNING: Sequences tr_E5S657_E5S657_TRISP_6334 and tr_A0A0V1CKY0_A0A0V1CKY0_TRIBR_45882 are exactly identical!
WARNING: Sequences tr_E5S657_E5S657_TRISP_6334 and tr_A0A0V0WE56_A0A0V0WE56_9BILA_92179 are exactly identical!
WARNING: Sequences tr_E5S657_E5S657_TRISP_6334 and tr_A0A0V0VDC2_A0A0V0VDC2_9BILA_181606 are exactly identical!
WARNING: Sequences tr_E5S657_E5S657_TRISP_6334 and tr_A0A0V1KZM9_A0A0V1KZM9_9BILA_6335 are exactly identical!
WARNING: Sequences tr_E5S657_E5S657_TRISP_6334 and tr_A0A0V0ZJA3_A0A0V0ZJA3_9BILA_990121 are exactly identical!
WARNING: Sequences tr_E5S657_E5S657_TRISP_6334 and tr_A0A0V1NLQ2_A0A0V1NLQ2_9BILA_92180 are exactly identical!
WARNING: Sequences tr_E5S657_E5S657_TRISP_6334 and tr_A0A0V0TR77_A0A0V0TR77_9BILA_144512 are exactly identical!
WARNING: Sequences tr_E5SMH8_E5SMH8_TRISP_6334 and tr_A0A0V0S1H7_A0A0V0S1H7_9BILA_6336 are exactly identical!
WARNING: Sequences tr_E5SMH8_E5SMH8_TRISP_6334 and tr_A0A0V1D8P0_A0A0V1D8P0_TRIBR_45882 are exactly identical!
WARNING: Sequences tr_E5SMH8_E5SMH8_TRISP_6334 and tr_A0A0V0VW54_A0A0V0VW54_9BILA_181606 are exactly identical!
WARNING: Sequences tr_E5SMH8_E5SMH8_TRISP_6334 and tr_A0A0V1L3K2_A0A0V1L3K2_9BILA_6335 are exactly identical!
WARNING: Sequences tr_E5SMH8_E5SMH8_TRISP_6334 and tr_A0A0V0ZJP0_A0A0V0ZJP0_9BILA_990121 are exactly identical!
WARNING: Sequences tr_E5SMH8_E5SMH8_TRISP_6334 and tr_A0A0V1P2N7_A0A0V1P2N7_9BILA_92180 are exactly identical!
WARNING: Sequences tr_E5SMH8_E5SMH8_TRISP_6334 and tr_A0A0V0TSK8_A0A0V0TSK8_9BILA_144512 are exactly identical!
WARNING: Sequences tr_A2XP36_A2XP36_ORYSI_39946 and tr_A0A0E0P3Y2_A0A0E0P3Y2_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A2XP36_A2XP36_ORYSI_39946 and tr_A0A0D9ZFU7_A0A0D9ZFU7_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_A2XP36_A2XP36_ORYSI_39946 and tr_A0A0D9W1F0_A0A0D9W1F0_9ORYZ_77586 are exactly identical!
WARNING: Sequences tr_A2XP36_A2XP36_ORYSI_39946 and tr_Q84J66_Q84J66_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_Q7PVI4_Q7PVI4_ANOGA_7165 and tr_A0A084WG14_A0A084WG14_ANOSI_74873 are exactly identical!
WARNING: Sequences tr_F4P9S3_F4P9S3_BATDJ_684364 and tr_A0A177WWU5_A0A177WWU5_BATDE_403673 are exactly identical!
WARNING: Sequences tr_K7FSG5_K7FSG5_PELSI_13735 and tr_A0A2I0MF95_A0A2I0MF95_COLLI_8932 are exactly identical!
WARNING: Sequences tr_K7FSG5_K7FSG5_PELSI_13735 and tr_A0A1V4KJS2_A0A1V4KJS2_PATFA_372326 are exactly identical!
WARNING: Sequences tr_G3TEI0_G3TEI0_LOXAF_9785 and tr_A0A2Y9FVL1_A0A2Y9FVL1_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_H0Z035_H0Z035_TAEGU_59729 and tr_U3JP93_U3JP93_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H0Z035_H0Z035_TAEGU_59729 and tr_A0A2I0LP30_A0A2I0LP30_COLLI_8932 are exactly identical!
WARNING: Sequences tr_H0Z035_H0Z035_TAEGU_59729 and tr_A0A1V4KTH2_A0A1V4KTH2_PATFA_372326 are exactly identical!
WARNING: Sequences tr_H0Z035_H0Z035_TAEGU_59729 and tr_A0A218UFK4_A0A218UFK4_9PASE_299123 are exactly identical!
WARNING: Sequences tr_D7M2C0_D7M2C0_ARALL_81972 and tr_R0H021_R0H021_9BRAS_81985 are exactly identical!
WARNING: Sequences tr_I1JXP2_I1JXP2_SOYBN_3847 and tr_I1KBY9_I1KBY9_SOYBN_3847 are exactly identical!
WARNING: Sequences tr_K7KS72_K7KS72_SOYBN_3847 and tr_A0A1S3UMN4_A0A1S3UMN4_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_W5N6V8_W5N6V8_LEPOC_7918 and tr_A0A2I4CZY3_A0A2I4CZY3_9TELE_52670 are exactly identical!
WARNING: Sequences tr_W5N6V8_W5N6V8_LEPOC_7918 and tr_A0A2U9CWC1_A0A2U9CWC1_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_A0A3B6I320_A0A3B6I320_WHEAT_4565 and tr_A0A3B6LYE5_A0A3B6LYE5_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_A0A044UND4_A0A044UND4_ONCVO_6282 and tr_A0A182EM36_A0A182EM36_ONCOC_42157 are exactly identical!
WARNING: Sequences tr_A0A2K6W9P5_A0A2K6W9P5_ONCVO_6282 and tr_A0A182E8F0_A0A182E8F0_ONCOC_42157 are exactly identical!
WARNING: Sequences tr_A0A067DYG9_A0A067DYG9_CITSI_2711 and tr_V4VCV2_V4VCV2_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_A0A067DYG9_A0A067DYG9_CITSI_2711 and tr_A0A2H5QJE7_A0A2H5QJE7_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A067FE27_A0A067FE27_CITSI_2711 and tr_V4T1L0_V4T1L0_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_A0A067FE27_A0A067FE27_CITSI_2711 and tr_A0A2H5Q4S6_A0A2H5Q4S6_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A0V1N4L8_A0A0V1N4L8_9BILA_268474 and tr_A0A0V1HMU2_A0A0V1HMU2_9BILA_268475 are exactly identical!
WARNING: Sequences tr_A0A1S3ZNY9_A0A1S3ZNY9_TOBAC_4097 and tr_A0A1U7WDW8_A0A1U7WDW8_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S4CDY5_A0A1S4CDY5_TOBAC_4097 and tr_A0A314KQ03_A0A314KQ03_NICAT_49451 are exactly identical!
WARNING: Sequences tr_A0A1S4CDY5_A0A1S4CDY5_TOBAC_4097 and tr_A0A1U7VND5_A0A1U7VND5_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S3H5H1_A0A1S3H5H1_LINUN_7574 and tr_A0A1S3KE69_A0A1S3KE69_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3H5H1_A0A1S3H5H1_LINUN_7574 and tr_A0A1S3KFB0_A0A1S3KFB0_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3H5H1_A0A1S3H5H1_LINUN_7574 and tr_A0A2R2MT43_A0A2R2MT43_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3IB48_A0A1S3IB48_LINUN_7574 and tr_A0A1S3IC98_A0A1S3IC98_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3IB48_A0A1S3IB48_LINUN_7574 and tr_A0A2R2MMB1_A0A2R2MMB1_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3NG11_A0A1S3NG11_SALSA_8030 and tr_A0A060VV48_A0A060VV48_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3NG11_A0A1S3NG11_SALSA_8030 and tr_A0A2D0QVQ9_A0A2D0QVQ9_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A1S3NG11_A0A1S3NG11_SALSA_8030 and tr_W5UIB2_W5UIB2_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_B5XCF6_B5XCF6_SALSA_8030 and tr_A0A060WVC7_A0A060WVC7_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A0M4ERR7_A0A0M4ERR7_DROBS_30019 and tr_A0A0M4ESA7_A0A0M4ESA7_DROBS_30019 are exactly identical!
WARNING: Sequences tr_A0A1J6IPW8_A0A1J6IPW8_NICAT_49451 and tr_A0A1U7VKB7_A0A1U7VKB7_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A2G2YFN5_A0A2G2YFN5_CAPAN_4072 and tr_A0A2G3B9L5_A0A2G3B9L5_CAPCH_80379 are exactly identical!
WARNING: Sequences tr_A0A2G2YXM4_A0A2G2YXM4_CAPAN_4072 and tr_A0A2G3BSH1_A0A2G3BSH1_CAPCH_80379 are exactly identical!
WARNING: Sequences tr_A0A2G3A0Q3_A0A2G3A0Q3_CAPAN_4072 and tr_A0A2G3CXL9_A0A2G3CXL9_CAPCH_80379 are exactly identical!
WARNING: Sequences tr_A0A2G8JKF7_A0A2G8JKF7_STIJA_307972 and tr_A0A2G8LNS4_A0A2G8LNS4_STIJA_307972 are exactly identical!
WARNING: Sequences tr_A0A2P5FD20_A0A2P5FD20_TREOI_63057 and tr_A0A2P5DV88_A0A2P5DV88_PARAD_3476 are exactly identical!
WARNING: Duplicate sequences found: 291

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H694/3_mltree/Q9H694.raxml.reduced.phy

Alignment comprises 1 partitions and 53 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 53 / 53
Gaps: 2.62 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H694/3_mltree/Q9H694.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 632 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 53 / 4240
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -55003.189636] Initial branch length optimization
[00:00:01 -43455.151831] Model parameter optimization (eps = 10.000000)
[00:00:13 -43409.992493] AUTODETECT spr round 1 (radius: 5)
[00:00:45 -28330.637378] AUTODETECT spr round 2 (radius: 10)
[00:01:21 -21284.520662] AUTODETECT spr round 3 (radius: 15)
[00:02:03 -17400.481443] AUTODETECT spr round 4 (radius: 20)
[00:02:46 -13862.869227] AUTODETECT spr round 5 (radius: 25)
[00:03:31 -13654.693540] SPR radius for FAST iterations: 25 (autodetect)
[00:03:31 -13654.693540] Model parameter optimization (eps = 3.000000)
[00:03:42 -13624.307109] FAST spr round 1 (radius: 25)
[00:04:22 -11623.598369] FAST spr round 2 (radius: 25)
[00:05:00 -11395.319163] FAST spr round 3 (radius: 25)
[00:05:33 -11390.345482] FAST spr round 4 (radius: 25)
[00:06:05 -11390.343688] Model parameter optimization (eps = 1.000000)
[00:06:11 -11388.354164] SLOW spr round 1 (radius: 5)
[00:06:44 -11386.180578] SLOW spr round 2 (radius: 5)
[00:07:18 -11386.178328] SLOW spr round 3 (radius: 10)
[00:07:54 -11385.023336] SLOW spr round 4 (radius: 5)
[00:08:33 -11381.980983] SLOW spr round 5 (radius: 5)
[00:09:08 -11381.836946] SLOW spr round 6 (radius: 5)
[00:09:42 -11381.836430] SLOW spr round 7 (radius: 10)
[00:10:19 -11377.127386] SLOW spr round 8 (radius: 5)
[00:10:56 -11377.127364] SLOW spr round 9 (radius: 10)
[00:11:33 -11366.327452] SLOW spr round 10 (radius: 5)
[00:12:10 -11366.327388] SLOW spr round 11 (radius: 10)
[00:12:46 -11365.232966] SLOW spr round 12 (radius: 5)
[00:13:23 -11365.232950] SLOW spr round 13 (radius: 10)
[00:13:59 -11365.232946] SLOW spr round 14 (radius: 15)
[00:14:43 -11359.761859] SLOW spr round 15 (radius: 5)
[00:15:23 -11356.633559] SLOW spr round 16 (radius: 5)
[00:15:59 -11356.632898] SLOW spr round 17 (radius: 10)
[00:16:35 -11356.632841] SLOW spr round 18 (radius: 15)
[00:17:20 -11356.461084] SLOW spr round 19 (radius: 5)
[00:17:59 -11356.461080] SLOW spr round 20 (radius: 10)
[00:18:39 -11356.461069] SLOW spr round 21 (radius: 15)
[00:19:22 -11356.461062] SLOW spr round 22 (radius: 20)
[00:20:11 -11330.272742] SLOW spr round 23 (radius: 5)
[00:20:52 -11330.270525] SLOW spr round 24 (radius: 10)
[00:21:31 -11330.270507] SLOW spr round 25 (radius: 15)
[00:22:16 -11330.270475] SLOW spr round 26 (radius: 20)
[00:23:06 -11330.270460] SLOW spr round 27 (radius: 25)
[00:23:57 -11328.920807] SLOW spr round 28 (radius: 5)
[00:24:38 -11328.919969] SLOW spr round 29 (radius: 10)
[00:25:18 -11328.919923] SLOW spr round 30 (radius: 15)
[00:26:02 -11328.919895] SLOW spr round 31 (radius: 20)
[00:26:51 -11328.919855] SLOW spr round 32 (radius: 25)
[00:27:42 -11328.919834] Model parameter optimization (eps = 0.100000)

[00:27:48] ML tree search #1, logLikelihood: -11328.105288

[00:27:48 -54987.615436] Initial branch length optimization
[00:27:49 -43497.856699] Model parameter optimization (eps = 10.000000)
[00:28:02 -43383.575406] AUTODETECT spr round 1 (radius: 5)
[00:28:35 -28109.164640] AUTODETECT spr round 2 (radius: 10)
[00:29:10 -20896.934767] AUTODETECT spr round 3 (radius: 15)
[00:29:49 -17112.839398] AUTODETECT spr round 4 (radius: 20)
[00:30:32 -15694.440195] AUTODETECT spr round 5 (radius: 25)
[00:31:14 -14966.195636] SPR radius for FAST iterations: 25 (autodetect)
[00:31:14 -14966.195636] Model parameter optimization (eps = 3.000000)
[00:31:24 -14938.260928] FAST spr round 1 (radius: 25)
[00:32:06 -11937.525244] FAST spr round 2 (radius: 25)
[00:32:42 -11651.702683] FAST spr round 3 (radius: 25)
[00:33:17 -11633.236394] FAST spr round 4 (radius: 25)
[00:33:51 -11586.455149] FAST spr round 5 (radius: 25)
[00:34:24 -11582.105791] FAST spr round 6 (radius: 25)
[00:34:55 -11582.041426] Model parameter optimization (eps = 1.000000)
[00:35:03 -11579.045810] SLOW spr round 1 (radius: 5)
[00:35:36 -11573.975738] SLOW spr round 2 (radius: 5)
[00:36:09 -11568.729335] SLOW spr round 3 (radius: 5)
[00:36:42 -11565.644843] SLOW spr round 4 (radius: 5)
[00:37:14 -11563.734815] SLOW spr round 5 (radius: 5)
[00:37:46 -11563.734795] SLOW spr round 6 (radius: 10)
[00:38:21 -11562.918722] SLOW spr round 7 (radius: 5)
[00:39:00 -11560.554698] SLOW spr round 8 (radius: 5)
[00:39:34 -11560.554438] SLOW spr round 9 (radius: 10)
[00:40:09 -11560.554423] SLOW spr round 10 (radius: 15)
[00:40:56 -11434.860574] SLOW spr round 11 (radius: 5)
[00:41:37 -11430.839463] SLOW spr round 12 (radius: 5)
[00:42:13 -11430.816482] SLOW spr round 13 (radius: 10)
[00:42:48 -11430.813885] SLOW spr round 14 (radius: 15)
[00:43:34 -11429.927761] SLOW spr round 15 (radius: 5)
[00:44:14 -11429.901590] SLOW spr round 16 (radius: 10)
[00:44:53 -11429.901429] SLOW spr round 17 (radius: 15)
[00:45:39 -11429.901268] SLOW spr round 18 (radius: 20)
[00:46:30 -11429.901106] SLOW spr round 19 (radius: 25)
[00:47:27 -11429.431603] SLOW spr round 20 (radius: 5)
[00:48:09 -11429.303654] SLOW spr round 21 (radius: 5)
[00:48:45 -11429.302717] SLOW spr round 22 (radius: 10)
[00:49:21 -11429.302511] SLOW spr round 23 (radius: 15)
[00:50:07 -11429.302347] SLOW spr round 24 (radius: 20)
[00:50:58 -11429.302187] SLOW spr round 25 (radius: 25)
[00:51:54 -11429.302027] Model parameter optimization (eps = 0.100000)

[00:51:58] ML tree search #2, logLikelihood: -11429.109986

[00:51:58 -55545.950282] Initial branch length optimization
[00:51:59 -43877.226670] Model parameter optimization (eps = 10.000000)
[00:52:10 -43728.163929] AUTODETECT spr round 1 (radius: 5)
[00:52:43 -28073.252127] AUTODETECT spr round 2 (radius: 10)
[00:53:18 -21412.473423] AUTODETECT spr round 3 (radius: 15)
[00:53:58 -17195.578274] AUTODETECT spr round 4 (radius: 20)
[00:54:43 -15751.358047] AUTODETECT spr round 5 (radius: 25)
[00:55:36 -13640.445832] SPR radius for FAST iterations: 25 (autodetect)
[00:55:36 -13640.445832] Model parameter optimization (eps = 3.000000)
[00:55:45 -13592.351827] FAST spr round 1 (radius: 25)
[00:56:26 -11489.345499] FAST spr round 2 (radius: 25)
[00:57:02 -11406.826812] FAST spr round 3 (radius: 25)
[00:57:35 -11399.748762] FAST spr round 4 (radius: 25)
[00:58:07 -11398.117042] FAST spr round 5 (radius: 25)
[00:58:38 -11398.116902] Model parameter optimization (eps = 1.000000)
[00:58:45 -11396.216007] SLOW spr round 1 (radius: 5)
[00:59:18 -11394.003592] SLOW spr round 2 (radius: 5)
[00:59:52 -11391.146935] SLOW spr round 3 (radius: 5)
[01:00:24 -11391.145385] SLOW spr round 4 (radius: 10)
[01:01:00 -11386.074716] SLOW spr round 5 (radius: 5)
[01:01:37 -11386.072574] SLOW spr round 6 (radius: 10)
[01:02:13 -11386.072099] SLOW spr round 7 (radius: 15)
[01:02:59 -11375.541199] SLOW spr round 8 (radius: 5)
[01:03:40 -11362.660443] SLOW spr round 9 (radius: 5)
[01:04:16 -11362.498576] SLOW spr round 10 (radius: 5)
[01:04:50 -11357.236068] SLOW spr round 11 (radius: 5)
[01:05:23 -11357.234988] SLOW spr round 12 (radius: 10)
[01:05:58 -11356.819294] SLOW spr round 13 (radius: 5)
[01:06:35 -11356.819039] SLOW spr round 14 (radius: 10)
[01:07:11 -11356.819009] SLOW spr round 15 (radius: 15)
[01:07:56 -11351.698223] SLOW spr round 16 (radius: 5)
[01:08:35 -11351.695135] SLOW spr round 17 (radius: 10)
[01:09:14 -11351.695129] SLOW spr round 18 (radius: 15)
[01:09:57 -11351.695129] SLOW spr round 19 (radius: 20)
[01:10:46 -11343.812504] SLOW spr round 20 (radius: 5)
[01:11:27 -11343.702451] SLOW spr round 21 (radius: 5)
[01:12:03 -11343.701755] SLOW spr round 22 (radius: 10)
[01:12:39 -11343.426556] SLOW spr round 23 (radius: 5)
[01:13:15 -11343.424325] SLOW spr round 24 (radius: 10)
[01:13:51 -11343.423827] SLOW spr round 25 (radius: 15)
[01:14:34 -11343.423671] SLOW spr round 26 (radius: 20)
[01:15:21 -11342.869178] SLOW spr round 27 (radius: 5)
[01:16:01 -11342.869049] SLOW spr round 28 (radius: 10)
[01:16:41 -11342.869019] SLOW spr round 29 (radius: 15)
[01:17:24 -11342.869011] SLOW spr round 30 (radius: 20)
[01:18:11 -11342.869009] SLOW spr round 31 (radius: 25)
[01:19:01 -11342.869009] Model parameter optimization (eps = 0.100000)

[01:19:08] ML tree search #3, logLikelihood: -11342.140193

[01:19:08 -55269.337383] Initial branch length optimization
[01:19:09 -43663.302054] Model parameter optimization (eps = 10.000000)
[01:19:20 -43494.462154] AUTODETECT spr round 1 (radius: 5)
[01:19:53 -28442.609545] AUTODETECT spr round 2 (radius: 10)
[01:20:27 -21075.352376] AUTODETECT spr round 3 (radius: 15)
[01:21:09 -15662.420377] AUTODETECT spr round 4 (radius: 20)
[01:21:57 -13831.307020] AUTODETECT spr round 5 (radius: 25)
[01:22:47 -13633.132143] SPR radius for FAST iterations: 25 (autodetect)
[01:22:47 -13633.132143] Model parameter optimization (eps = 3.000000)
[01:22:56 -13587.510296] FAST spr round 1 (radius: 25)
[01:23:38 -11548.875078] FAST spr round 2 (radius: 25)
[01:24:14 -11458.510527] FAST spr round 3 (radius: 25)
[01:24:48 -11323.779500] FAST spr round 4 (radius: 25)
[01:25:22 -11320.770165] FAST spr round 5 (radius: 25)
[01:25:54 -11320.768390] Model parameter optimization (eps = 1.000000)
[01:26:01 -11318.693159] SLOW spr round 1 (radius: 5)
[01:26:35 -11316.616962] SLOW spr round 2 (radius: 5)
[01:27:08 -11316.608294] SLOW spr round 3 (radius: 10)
[01:27:44 -11312.694576] SLOW spr round 4 (radius: 5)
[01:28:23 -11312.224323] SLOW spr round 5 (radius: 5)
[01:28:58 -11312.224100] SLOW spr round 6 (radius: 10)
[01:29:34 -11311.039693] SLOW spr round 7 (radius: 5)
[01:30:13 -11305.579669] SLOW spr round 8 (radius: 5)
[01:30:48 -11305.579659] SLOW spr round 9 (radius: 10)
[01:31:24 -11305.579656] SLOW spr round 10 (radius: 15)
[01:32:10 -11297.760095] SLOW spr round 11 (radius: 5)
[01:32:51 -11297.586659] SLOW spr round 12 (radius: 5)
[01:33:27 -11297.586310] SLOW spr round 13 (radius: 10)
[01:34:04 -11295.297806] SLOW spr round 14 (radius: 5)
[01:34:43 -11293.447363] SLOW spr round 15 (radius: 5)
[01:35:17 -11293.444641] SLOW spr round 16 (radius: 10)
[01:35:53 -11293.444506] SLOW spr round 17 (radius: 15)
[01:36:39 -11290.342674] SLOW spr round 18 (radius: 5)
[01:37:19 -11290.342543] SLOW spr round 19 (radius: 10)
[01:37:59 -11290.342541] SLOW spr round 20 (radius: 15)
[01:38:44 -11290.342540] SLOW spr round 21 (radius: 20)
[01:39:35 -11290.342540] SLOW spr round 22 (radius: 25)
[01:40:29 -11289.863001] SLOW spr round 23 (radius: 5)
[01:41:11 -11289.862515] SLOW spr round 24 (radius: 10)
[01:41:51 -11289.862502] SLOW spr round 25 (radius: 15)
[01:42:36 -11289.862501] SLOW spr round 26 (radius: 20)
[01:43:27 -11289.862500] SLOW spr round 27 (radius: 25)
[01:44:22 -11289.862500] Model parameter optimization (eps = 0.100000)

[01:44:28] ML tree search #4, logLikelihood: -11289.760455

[01:44:28 -54285.135734] Initial branch length optimization
[01:44:29 -42457.907602] Model parameter optimization (eps = 10.000000)
[01:44:41 -42337.941160] AUTODETECT spr round 1 (radius: 5)
[01:45:14 -27425.940572] AUTODETECT spr round 2 (radius: 10)
[01:45:50 -19658.203082] AUTODETECT spr round 3 (radius: 15)
[01:46:33 -15653.238289] AUTODETECT spr round 4 (radius: 20)
[01:47:22 -14400.042435] AUTODETECT spr round 5 (radius: 25)
[01:48:10 -13433.855888] SPR radius for FAST iterations: 25 (autodetect)
[01:48:10 -13433.855888] Model parameter optimization (eps = 3.000000)
[01:48:17 -13403.662394] FAST spr round 1 (radius: 25)
[01:48:57 -11504.621722] FAST spr round 2 (radius: 25)
[01:49:33 -11373.561407] FAST spr round 3 (radius: 25)
[01:50:05 -11353.633009] FAST spr round 4 (radius: 25)
[01:50:36 -11353.632018] Model parameter optimization (eps = 1.000000)
[01:50:45 -11350.227226] SLOW spr round 1 (radius: 5)
[01:51:18 -11348.850480] SLOW spr round 2 (radius: 5)
[01:51:50 -11348.849288] SLOW spr round 3 (radius: 10)
[01:52:25 -11340.690368] SLOW spr round 4 (radius: 5)
[01:53:03 -11340.690173] SLOW spr round 5 (radius: 10)
[01:53:40 -11337.592440] SLOW spr round 6 (radius: 5)
[01:54:19 -11336.746998] SLOW spr round 7 (radius: 5)
[01:54:52 -11336.746814] SLOW spr round 8 (radius: 10)
[01:55:27 -11336.746810] SLOW spr round 9 (radius: 15)
[01:56:13 -11328.705692] SLOW spr round 10 (radius: 5)
[01:56:53 -11328.495391] SLOW spr round 11 (radius: 5)
[01:57:28 -11328.494930] SLOW spr round 12 (radius: 10)
[01:58:03 -11328.494918] SLOW spr round 13 (radius: 15)
[01:58:49 -11328.494918] SLOW spr round 14 (radius: 20)
[01:59:40 -11320.361621] SLOW spr round 15 (radius: 5)
[02:00:20 -11320.361239] SLOW spr round 16 (radius: 10)
[02:00:59 -11320.361232] SLOW spr round 17 (radius: 15)
[02:01:44 -11320.361232] SLOW spr round 18 (radius: 20)
[02:02:34 -11320.361231] SLOW spr round 19 (radius: 25)
[02:03:30 -11320.079095] SLOW spr round 20 (radius: 5)
[02:04:11 -11320.079093] SLOW spr round 21 (radius: 10)
[02:04:51 -11320.079092] SLOW spr round 22 (radius: 15)
[02:05:35 -11320.079092] SLOW spr round 23 (radius: 20)
[02:06:26 -11320.079092] SLOW spr round 24 (radius: 25)
[02:07:21 -11320.079092] Model parameter optimization (eps = 0.100000)

[02:07:27] ML tree search #5, logLikelihood: -11319.865408

[02:07:27 -55100.619757] Initial branch length optimization
[02:07:28 -43469.347516] Model parameter optimization (eps = 10.000000)
[02:07:45 -43276.139603] AUTODETECT spr round 1 (radius: 5)
[02:08:18 -27655.557637] AUTODETECT spr round 2 (radius: 10)
[02:08:53 -21396.986164] AUTODETECT spr round 3 (radius: 15)
[02:09:32 -17940.545038] AUTODETECT spr round 4 (radius: 20)
[02:10:16 -16916.486699] AUTODETECT spr round 5 (radius: 25)
[02:11:09 -15169.971958] SPR radius for FAST iterations: 25 (autodetect)
[02:11:09 -15169.971958] Model parameter optimization (eps = 3.000000)
[02:11:19 -15125.200834] FAST spr round 1 (radius: 25)
[02:12:01 -12284.656988] FAST spr round 2 (radius: 25)
[02:12:38 -11864.931502] FAST spr round 3 (radius: 25)
[02:13:13 -11804.305495] FAST spr round 4 (radius: 25)
[02:13:47 -11784.028908] FAST spr round 5 (radius: 25)
[02:14:20 -11782.361216] FAST spr round 6 (radius: 25)
[02:14:52 -11782.033585] FAST spr round 7 (radius: 25)
[02:15:24 -11782.033185] Model parameter optimization (eps = 1.000000)
[02:15:28 -11781.390079] SLOW spr round 1 (radius: 5)
[02:16:02 -11779.320210] SLOW spr round 2 (radius: 5)
[02:16:36 -11774.456672] SLOW spr round 3 (radius: 5)
[02:17:09 -11771.787600] SLOW spr round 4 (radius: 5)
[02:17:42 -11771.786842] SLOW spr round 5 (radius: 10)
[02:18:18 -11765.133596] SLOW spr round 6 (radius: 5)
[02:18:57 -11762.127755] SLOW spr round 7 (radius: 5)
[02:19:32 -11762.123997] SLOW spr round 8 (radius: 10)
[02:20:08 -11756.900512] SLOW spr round 9 (radius: 5)
[02:20:46 -11756.900067] SLOW spr round 10 (radius: 10)
[02:21:24 -11748.370174] SLOW spr round 11 (radius: 5)
[02:22:02 -11747.993508] SLOW spr round 12 (radius: 5)
[02:22:37 -11747.992663] SLOW spr round 13 (radius: 10)
[02:23:13 -11747.264916] SLOW spr round 14 (radius: 5)
[02:23:51 -11747.264267] SLOW spr round 15 (radius: 10)
[02:24:28 -11747.263654] SLOW spr round 16 (radius: 15)
[02:25:14 -11747.263040] SLOW spr round 17 (radius: 20)
[02:26:06 -11746.168267] SLOW spr round 18 (radius: 5)
[02:26:47 -11746.167612] SLOW spr round 19 (radius: 10)
[02:27:27 -11746.166993] SLOW spr round 20 (radius: 15)
[02:28:13 -11746.166371] SLOW spr round 21 (radius: 20)
[02:29:05 -11746.165837] SLOW spr round 22 (radius: 25)
[02:30:02 -11693.113837] SLOW spr round 23 (radius: 5)
[02:30:46 -11533.460109] SLOW spr round 24 (radius: 5)
[02:31:25 -11486.421997] SLOW spr round 25 (radius: 5)
[02:32:00 -11484.436723] SLOW spr round 26 (radius: 5)
[02:32:32 -11484.436374] SLOW spr round 27 (radius: 10)
[02:33:07 -11484.082859] SLOW spr round 28 (radius: 5)
[02:33:45 -11484.081981] SLOW spr round 29 (radius: 10)
[02:34:21 -11484.081957] SLOW spr round 30 (radius: 15)
[02:35:05 -11483.880034] SLOW spr round 31 (radius: 5)
[02:35:45 -11483.880010] SLOW spr round 32 (radius: 10)
[02:36:23 -11483.880010] SLOW spr round 33 (radius: 15)
[02:37:07 -11483.880010] SLOW spr round 34 (radius: 20)
[02:37:56 -11483.880010] SLOW spr round 35 (radius: 25)
[02:38:49 -11481.712573] SLOW spr round 36 (radius: 5)
[02:39:32 -11477.853496] SLOW spr round 37 (radius: 5)
[02:40:09 -11477.849316] SLOW spr round 38 (radius: 10)
[02:40:45 -11477.849097] SLOW spr round 39 (radius: 15)
[02:41:30 -11476.034669] SLOW spr round 40 (radius: 5)
[02:42:09 -11475.375444] SLOW spr round 41 (radius: 5)
[02:42:45 -11475.374735] SLOW spr round 42 (radius: 10)
[02:43:21 -11475.374692] SLOW spr round 43 (radius: 15)
[02:44:05 -11451.145211] SLOW spr round 44 (radius: 5)
[02:44:46 -11450.109001] SLOW spr round 45 (radius: 5)
[02:45:22 -11450.086133] SLOW spr round 46 (radius: 10)
[02:45:58 -11449.838531] SLOW spr round 47 (radius: 5)
[02:46:36 -11449.837017] SLOW spr round 48 (radius: 10)
[02:47:12 -11449.836827] SLOW spr round 49 (radius: 15)
[02:47:56 -11449.836799] SLOW spr round 50 (radius: 20)
[02:48:43 -11449.836796] SLOW spr round 51 (radius: 25)
[02:49:34 -11449.569436] SLOW spr round 52 (radius: 5)
[02:50:15 -11449.569432] SLOW spr round 53 (radius: 10)
[02:50:55 -11449.569431] SLOW spr round 54 (radius: 15)
[02:51:38 -11449.569431] SLOW spr round 55 (radius: 20)
[02:52:26 -11449.569431] SLOW spr round 56 (radius: 25)
[02:53:17 -11449.569431] Model parameter optimization (eps = 0.100000)

[02:53:22] ML tree search #6, logLikelihood: -11449.371042

[02:53:22 -54953.017968] Initial branch length optimization
[02:53:23 -43452.511767] Model parameter optimization (eps = 10.000000)
[02:53:35 -43315.769732] AUTODETECT spr round 1 (radius: 5)
[02:54:08 -28542.461504] AUTODETECT spr round 2 (radius: 10)
[02:54:43 -22161.694574] AUTODETECT spr round 3 (radius: 15)
[02:55:25 -16355.841872] AUTODETECT spr round 4 (radius: 20)
[02:56:09 -14857.322151] AUTODETECT spr round 5 (radius: 25)
[02:56:58 -14284.298940] SPR radius for FAST iterations: 25 (autodetect)
[02:56:58 -14284.298940] Model parameter optimization (eps = 3.000000)
[02:57:06 -14241.565019] FAST spr round 1 (radius: 25)
[02:57:48 -12106.698097] FAST spr round 2 (radius: 25)
[02:58:23 -11817.190428] FAST spr round 3 (radius: 25)
[02:58:56 -11794.734025] FAST spr round 4 (radius: 25)
[02:59:27 -11794.511781] FAST spr round 5 (radius: 25)
[02:59:58 -11794.511438] Model parameter optimization (eps = 1.000000)
[03:00:06 -11792.629324] SLOW spr round 1 (radius: 5)
[03:00:38 -11789.330367] SLOW spr round 2 (radius: 5)
[03:01:12 -11786.000041] SLOW spr round 3 (radius: 5)
[03:01:44 -11785.717922] SLOW spr round 4 (radius: 5)
[03:02:16 -11785.716174] SLOW spr round 5 (radius: 10)
[03:02:51 -11754.138877] SLOW spr round 6 (radius: 5)
[03:03:31 -11702.903595] SLOW spr round 7 (radius: 5)
[03:04:06 -11700.418307] SLOW spr round 8 (radius: 5)
[03:04:38 -11700.417502] SLOW spr round 9 (radius: 10)
[03:05:13 -11700.417261] SLOW spr round 10 (radius: 15)
[03:05:59 -11693.854584] SLOW spr round 11 (radius: 5)
[03:06:40 -11691.287513] SLOW spr round 12 (radius: 5)
[03:07:16 -11691.287159] SLOW spr round 13 (radius: 10)
[03:07:52 -11690.421436] SLOW spr round 14 (radius: 5)
[03:08:31 -11684.511242] SLOW spr round 15 (radius: 5)
[03:09:05 -11684.511065] SLOW spr round 16 (radius: 10)
[03:09:41 -11683.135654] SLOW spr round 17 (radius: 5)
[03:10:19 -11683.133198] SLOW spr round 18 (radius: 10)
[03:10:55 -11683.133009] SLOW spr round 19 (radius: 15)
[03:11:40 -11683.132991] SLOW spr round 20 (radius: 20)
[03:12:34 -11485.794292] SLOW spr round 21 (radius: 5)
[03:13:15 -11485.714329] SLOW spr round 22 (radius: 10)
[03:13:55 -11474.956071] SLOW spr round 23 (radius: 5)
[03:14:32 -11474.684504] SLOW spr round 24 (radius: 5)
[03:15:06 -11474.684478] SLOW spr round 25 (radius: 10)
[03:15:41 -11474.684478] SLOW spr round 26 (radius: 15)
[03:16:26 -11474.684477] SLOW spr round 27 (radius: 20)
[03:17:18 -11474.335046] SLOW spr round 28 (radius: 5)
[03:18:00 -11353.918472] SLOW spr round 29 (radius: 5)
[03:18:37 -11353.213994] SLOW spr round 30 (radius: 5)
[03:19:10 -11353.211520] SLOW spr round 31 (radius: 10)
[03:19:45 -11353.211186] SLOW spr round 32 (radius: 15)
[03:20:30 -11353.211136] SLOW spr round 33 (radius: 20)
[03:21:21 -11353.211127] SLOW spr round 34 (radius: 25)
[03:22:21 -11348.248575] SLOW spr round 35 (radius: 5)
[03:23:02 -11348.030404] SLOW spr round 36 (radius: 5)
[03:23:39 -11348.029102] SLOW spr round 37 (radius: 10)
[03:24:14 -11348.029049] SLOW spr round 38 (radius: 15)
[03:24:59 -11348.029034] SLOW spr round 39 (radius: 20)
[03:25:48 -11348.029027] SLOW spr round 40 (radius: 25)
[03:26:43 -11347.374331] SLOW spr round 41 (radius: 5)
[03:27:24 -11347.319955] SLOW spr round 42 (radius: 10)
[03:28:04 -11347.319933] SLOW spr round 43 (radius: 15)
[03:28:47 -11347.319931] SLOW spr round 44 (radius: 20)
[03:29:37 -11347.319931] SLOW spr round 45 (radius: 25)
[03:30:31 -11347.319930] Model parameter optimization (eps = 0.100000)

[03:30:37] ML tree search #7, logLikelihood: -11346.803708

[03:30:37 -55176.713622] Initial branch length optimization
[03:30:38 -43664.124302] Model parameter optimization (eps = 10.000000)
[03:30:55 -43463.372062] AUTODETECT spr round 1 (radius: 5)
[03:31:28 -28301.000948] AUTODETECT spr round 2 (radius: 10)
[03:32:04 -20967.722309] AUTODETECT spr round 3 (radius: 15)
[03:32:45 -16361.501979] AUTODETECT spr round 4 (radius: 20)
[03:33:31 -14641.593930] AUTODETECT spr round 5 (radius: 25)
[03:34:22 -13453.539625] SPR radius for FAST iterations: 25 (autodetect)
[03:34:22 -13453.539625] Model parameter optimization (eps = 3.000000)
[03:34:29 -13429.062514] FAST spr round 1 (radius: 25)
[03:35:10 -11595.076381] FAST spr round 2 (radius: 25)
[03:35:45 -11472.502743] FAST spr round 3 (radius: 25)
[03:36:17 -11466.797805] FAST spr round 4 (radius: 25)
[03:36:48 -11466.796649] Model parameter optimization (eps = 1.000000)
[03:36:55 -11462.868354] SLOW spr round 1 (radius: 5)
[03:37:27 -11459.627340] SLOW spr round 2 (radius: 5)
[03:38:00 -11458.220662] SLOW spr round 3 (radius: 5)
[03:38:31 -11458.220607] SLOW spr round 4 (radius: 10)
[03:39:06 -11453.905081] SLOW spr round 5 (radius: 5)
[03:39:44 -11450.838541] SLOW spr round 6 (radius: 5)
[03:40:18 -11448.236910] SLOW spr round 7 (radius: 5)
[03:40:50 -11448.236871] SLOW spr round 8 (radius: 10)
[03:41:25 -11448.236871] SLOW spr round 9 (radius: 15)
[03:42:10 -11435.429483] SLOW spr round 10 (radius: 5)
[03:42:49 -11432.797249] SLOW spr round 11 (radius: 5)
[03:43:25 -11432.794653] SLOW spr round 12 (radius: 10)
[03:43:59 -11432.794436] SLOW spr round 13 (radius: 15)
[03:44:43 -11431.436965] SLOW spr round 14 (radius: 5)
[03:45:22 -11431.436943] SLOW spr round 15 (radius: 10)
[03:46:00 -11431.436942] SLOW spr round 16 (radius: 15)
[03:46:43 -11431.436942] SLOW spr round 17 (radius: 20)
[03:47:32 -11431.436942] SLOW spr round 18 (radius: 25)
[03:48:20 -11431.436942] Model parameter optimization (eps = 0.100000)

[03:48:27] ML tree search #8, logLikelihood: -11431.304745

[03:48:27 -54451.740683] Initial branch length optimization
[03:48:27 -43102.620752] Model parameter optimization (eps = 10.000000)
[03:48:44 -42958.551161] AUTODETECT spr round 1 (radius: 5)
[03:49:16 -27116.711718] AUTODETECT spr round 2 (radius: 10)
[03:49:52 -20690.902927] AUTODETECT spr round 3 (radius: 15)
[03:50:33 -17550.951790] AUTODETECT spr round 4 (radius: 20)
[03:51:27 -15162.216512] AUTODETECT spr round 5 (radius: 25)
[03:52:20 -14382.455069] SPR radius for FAST iterations: 25 (autodetect)
[03:52:20 -14382.455069] Model parameter optimization (eps = 3.000000)
[03:52:29 -14364.364428] FAST spr round 1 (radius: 25)
[03:53:11 -12208.735300] FAST spr round 2 (radius: 25)
[03:53:47 -11978.007420] FAST spr round 3 (radius: 25)
[03:54:20 -11967.937866] FAST spr round 4 (radius: 25)
[03:54:52 -11967.640323] FAST spr round 5 (radius: 25)
[03:55:23 -11967.640176] Model parameter optimization (eps = 1.000000)
[03:55:29 -11963.044702] SLOW spr round 1 (radius: 5)
[03:56:02 -11962.348959] SLOW spr round 2 (radius: 5)
[03:56:34 -11962.348790] SLOW spr round 3 (radius: 10)
[03:57:13 -11953.749427] SLOW spr round 4 (radius: 5)
[03:57:50 -11953.749111] SLOW spr round 5 (radius: 10)
[03:58:27 -11953.748949] SLOW spr round 6 (radius: 15)
[03:59:12 -11947.975314] SLOW spr round 7 (radius: 5)
[03:59:52 -11947.974793] SLOW spr round 8 (radius: 10)
[04:00:32 -11947.974586] SLOW spr round 9 (radius: 15)
[04:01:16 -11947.974412] SLOW spr round 10 (radius: 20)
[04:02:07 -11945.895644] SLOW spr round 11 (radius: 5)
[04:02:48 -11945.895369] SLOW spr round 12 (radius: 10)
[04:03:29 -11945.895092] SLOW spr round 13 (radius: 15)
[04:04:12 -11945.894931] SLOW spr round 14 (radius: 20)
[04:05:03 -11945.894798] SLOW spr round 15 (radius: 25)
[04:05:59 -11942.763755] SLOW spr round 16 (radius: 5)
[04:06:41 -11942.214140] SLOW spr round 17 (radius: 5)
[04:07:18 -11942.213175] SLOW spr round 18 (radius: 10)
[04:07:55 -11940.973928] SLOW spr round 19 (radius: 5)
[04:08:32 -11940.972980] SLOW spr round 20 (radius: 10)
[04:09:09 -11940.972826] SLOW spr round 21 (radius: 15)
[04:09:53 -11940.972681] SLOW spr round 22 (radius: 20)
[04:10:44 -11940.972536] SLOW spr round 23 (radius: 25)
[04:11:40 -11940.972391] Model parameter optimization (eps = 0.100000)

[04:11:43] ML tree search #9, logLikelihood: -11940.962494

[04:11:43 -54971.072197] Initial branch length optimization
[04:11:44 -43551.295792] Model parameter optimization (eps = 10.000000)
[04:11:57 -43352.952315] AUTODETECT spr round 1 (radius: 5)
[04:12:29 -28625.675560] AUTODETECT spr round 2 (radius: 10)
[04:13:05 -20001.708279] AUTODETECT spr round 3 (radius: 15)
[04:13:47 -15609.834580] AUTODETECT spr round 4 (radius: 20)
[04:14:37 -13898.274179] AUTODETECT spr round 5 (radius: 25)
[04:15:20 -13449.953209] SPR radius for FAST iterations: 25 (autodetect)
[04:15:20 -13449.953209] Model parameter optimization (eps = 3.000000)
[04:15:30 -13411.154776] FAST spr round 1 (radius: 25)
[04:16:10 -11591.487787] FAST spr round 2 (radius: 25)
[04:16:45 -11476.216582] FAST spr round 3 (radius: 25)
[04:17:18 -11436.600936] FAST spr round 4 (radius: 25)
[04:17:50 -11435.691100] FAST spr round 5 (radius: 25)
[04:18:21 -11435.690915] Model parameter optimization (eps = 1.000000)
[04:18:28 -11434.296763] SLOW spr round 1 (radius: 5)
[04:19:01 -11430.816182] SLOW spr round 2 (radius: 5)
[04:19:34 -11429.784101] SLOW spr round 3 (radius: 5)
[04:20:06 -11429.192198] SLOW spr round 4 (radius: 5)
[04:20:38 -11429.191980] SLOW spr round 5 (radius: 10)
[04:21:13 -11427.410476] SLOW spr round 6 (radius: 5)
[04:21:51 -11426.165616] SLOW spr round 7 (radius: 5)
[04:22:25 -11426.154002] SLOW spr round 8 (radius: 10)
[04:23:01 -11425.678599] SLOW spr round 9 (radius: 5)
[04:23:37 -11425.678599] SLOW spr round 10 (radius: 10)
[04:24:14 -11425.678599] SLOW spr round 11 (radius: 15)
[04:24:59 -11420.725190] SLOW spr round 12 (radius: 5)
[04:25:37 -11420.724609] SLOW spr round 13 (radius: 10)
[04:26:16 -11418.006570] SLOW spr round 14 (radius: 5)
[04:26:53 -11418.004975] SLOW spr round 15 (radius: 10)
[04:27:29 -11416.555718] SLOW spr round 16 (radius: 5)
[04:28:05 -11416.555636] SLOW spr round 17 (radius: 10)
[04:28:42 -11416.555634] SLOW spr round 18 (radius: 15)
[04:29:27 -11416.555634] SLOW spr round 19 (radius: 20)
[04:30:17 -11385.998044] SLOW spr round 20 (radius: 5)
[04:30:59 -11298.480812] SLOW spr round 21 (radius: 5)
[04:31:35 -11297.090328] SLOW spr round 22 (radius: 5)
[04:32:08 -11297.090290] SLOW spr round 23 (radius: 10)
[04:32:43 -11297.090285] SLOW spr round 24 (radius: 15)
[04:33:29 -11288.974389] SLOW spr round 25 (radius: 5)
[04:34:09 -11288.963494] SLOW spr round 26 (radius: 10)
[04:34:47 -11288.962037] SLOW spr round 27 (radius: 15)
[04:35:33 -11288.961422] SLOW spr round 28 (radius: 20)
[04:36:23 -11287.431234] SLOW spr round 29 (radius: 5)
[04:37:03 -11287.431065] SLOW spr round 30 (radius: 10)
[04:37:44 -11287.431015] SLOW spr round 31 (radius: 15)
[04:38:29 -11287.430994] SLOW spr round 32 (radius: 20)
[04:39:19 -11287.430985] SLOW spr round 33 (radius: 25)
[04:40:11 -11285.112732] SLOW spr round 34 (radius: 5)
[04:40:52 -11279.686605] SLOW spr round 35 (radius: 5)
[04:41:31 -11275.924123] SLOW spr round 36 (radius: 5)
[04:42:04 -11275.900298] SLOW spr round 37 (radius: 10)
[04:42:39 -11275.900261] SLOW spr round 38 (radius: 15)
[04:43:24 -11275.900260] SLOW spr round 39 (radius: 20)
[04:44:14 -11275.900260] SLOW spr round 40 (radius: 25)
[04:45:09 -11272.389404] SLOW spr round 41 (radius: 5)
[04:45:50 -11272.082758] SLOW spr round 42 (radius: 5)
[04:46:27 -11272.081062] SLOW spr round 43 (radius: 10)
[04:47:02 -11272.080582] SLOW spr round 44 (radius: 15)
[04:47:48 -11272.080444] SLOW spr round 45 (radius: 20)
[04:48:39 -11272.080404] SLOW spr round 46 (radius: 25)
[04:49:34 -11272.080393] Model parameter optimization (eps = 0.100000)

[04:49:39] ML tree search #10, logLikelihood: -11271.719407

[04:49:39 -54976.769134] Initial branch length optimization
[04:49:40 -43370.845722] Model parameter optimization (eps = 10.000000)
[04:49:54 -43218.487838] AUTODETECT spr round 1 (radius: 5)
[04:50:26 -27414.604803] AUTODETECT spr round 2 (radius: 10)
[04:51:02 -19714.570875] AUTODETECT spr round 3 (radius: 15)
[04:51:42 -15420.383180] AUTODETECT spr round 4 (radius: 20)
[04:52:28 -13365.376979] AUTODETECT spr round 5 (radius: 25)
[04:53:20 -12960.333094] SPR radius for FAST iterations: 25 (autodetect)
[04:53:20 -12960.333094] Model parameter optimization (eps = 3.000000)
[04:53:29 -12931.841380] FAST spr round 1 (radius: 25)
[04:54:12 -11501.634570] FAST spr round 2 (radius: 25)
[04:54:49 -11419.084615] FAST spr round 3 (radius: 25)
[04:55:22 -11411.404767] FAST spr round 4 (radius: 25)
[04:55:55 -11406.517800] FAST spr round 5 (radius: 25)
[04:56:28 -11400.846771] FAST spr round 6 (radius: 25)
[04:56:59 -11400.846635] Model parameter optimization (eps = 1.000000)
[04:57:05 -11399.183220] SLOW spr round 1 (radius: 5)
[04:57:37 -11398.264909] SLOW spr round 2 (radius: 5)
[04:58:11 -11397.311364] SLOW spr round 3 (radius: 5)
[04:58:43 -11396.708837] SLOW spr round 4 (radius: 5)
[04:59:16 -11396.708608] SLOW spr round 5 (radius: 10)
[04:59:53 -11392.869061] SLOW spr round 6 (radius: 5)
[05:00:32 -11388.157528] SLOW spr round 7 (radius: 5)
[05:01:07 -11388.155034] SLOW spr round 8 (radius: 10)
[05:01:44 -11388.154084] SLOW spr round 9 (radius: 15)
[05:02:30 -11386.408355] SLOW spr round 10 (radius: 5)
[05:03:11 -11384.458857] SLOW spr round 11 (radius: 5)
[05:03:47 -11383.142023] SLOW spr round 12 (radius: 5)
[05:04:20 -11383.141995] SLOW spr round 13 (radius: 10)
[05:04:56 -11383.141958] SLOW spr round 14 (radius: 15)
[05:05:41 -11383.141935] SLOW spr round 15 (radius: 20)
[05:06:31 -11382.473336] SLOW spr round 16 (radius: 5)
[05:07:12 -11382.473325] SLOW spr round 17 (radius: 10)
[05:07:52 -11380.013168] SLOW spr round 18 (radius: 5)
[05:08:29 -11380.011137] SLOW spr round 19 (radius: 10)
[05:09:05 -11380.011004] SLOW spr round 20 (radius: 15)
[05:09:49 -11380.010990] SLOW spr round 21 (radius: 20)
[05:10:37 -11380.010972] SLOW spr round 22 (radius: 25)
[05:11:29 -11378.715823] SLOW spr round 23 (radius: 5)
[05:12:10 -11378.715743] SLOW spr round 24 (radius: 10)
[05:12:51 -11378.715724] SLOW spr round 25 (radius: 15)
[05:13:35 -11378.715712] SLOW spr round 26 (radius: 20)
[05:14:22 -11378.715708] SLOW spr round 27 (radius: 25)
[05:15:12 -11378.715706] Model parameter optimization (eps = 0.100000)

[05:15:20] ML tree search #11, logLikelihood: -11378.044808

[05:15:20 -54493.790525] Initial branch length optimization
[05:15:20 -43003.317171] Model parameter optimization (eps = 10.000000)
[05:15:30 -42843.365645] AUTODETECT spr round 1 (radius: 5)
[05:16:03 -27809.444973] AUTODETECT spr round 2 (radius: 10)
[05:16:39 -20738.944011] AUTODETECT spr round 3 (radius: 15)
[05:17:22 -16984.412206] AUTODETECT spr round 4 (radius: 20)
[05:18:07 -14573.380253] AUTODETECT spr round 5 (radius: 25)
[05:18:59 -13684.568530] SPR radius for FAST iterations: 25 (autodetect)
[05:18:59 -13684.568530] Model parameter optimization (eps = 3.000000)
[05:19:09 -13629.641696] FAST spr round 1 (radius: 25)
[05:19:50 -11602.458997] FAST spr round 2 (radius: 25)
[05:20:25 -11492.956803] FAST spr round 3 (radius: 25)
[05:20:59 -11484.293118] FAST spr round 4 (radius: 25)
[05:21:31 -11484.036120] FAST spr round 5 (radius: 25)
[05:22:02 -11484.003294] Model parameter optimization (eps = 1.000000)
[05:22:09 -11479.867775] SLOW spr round 1 (radius: 5)
[05:22:43 -11477.049806] SLOW spr round 2 (radius: 5)
[05:23:17 -11475.959696] SLOW spr round 3 (radius: 5)
[05:23:50 -11475.959075] SLOW spr round 4 (radius: 10)
[05:24:27 -11448.667341] SLOW spr round 5 (radius: 5)
[05:25:06 -11443.903429] SLOW spr round 6 (radius: 5)
[05:25:40 -11443.901840] SLOW spr round 7 (radius: 10)
[05:26:17 -11442.431211] SLOW spr round 8 (radius: 5)
[05:26:56 -11439.484177] SLOW spr round 9 (radius: 5)
[05:27:31 -11439.484053] SLOW spr round 10 (radius: 10)
[05:28:07 -11439.483998] SLOW spr round 11 (radius: 15)
[05:28:53 -11439.483868] SLOW spr round 12 (radius: 20)
[05:29:41 -11437.312530] SLOW spr round 13 (radius: 5)
[05:30:22 -11436.854896] SLOW spr round 14 (radius: 5)
[05:30:58 -11436.854836] SLOW spr round 15 (radius: 10)
[05:31:34 -11436.854809] SLOW spr round 16 (radius: 15)
[05:32:19 -11436.854745] SLOW spr round 17 (radius: 20)
[05:33:07 -11436.854720] SLOW spr round 18 (radius: 25)
[05:33:57 -11371.565685] SLOW spr round 19 (radius: 5)
[05:34:40 -11344.905967] SLOW spr round 20 (radius: 5)
[05:35:17 -11343.738421] SLOW spr round 21 (radius: 5)
[05:35:50 -11343.738189] SLOW spr round 22 (radius: 10)
[05:36:26 -11343.738163] SLOW spr round 23 (radius: 15)
[05:37:10 -11343.738159] SLOW spr round 24 (radius: 20)
[05:37:57 -11343.738154] SLOW spr round 25 (radius: 25)
[05:38:47 -11342.937329] SLOW spr round 26 (radius: 5)
[05:39:28 -11342.850601] SLOW spr round 27 (radius: 10)
[05:40:09 -11342.850581] SLOW spr round 28 (radius: 15)
[05:40:54 -11342.850575] SLOW spr round 29 (radius: 20)
[05:41:42 -11342.850571] SLOW spr round 30 (radius: 25)
[05:42:33 -11342.850566] Model parameter optimization (eps = 0.100000)

[05:42:36] ML tree search #12, logLikelihood: -11342.797792

[05:42:36 -54485.487601] Initial branch length optimization
[05:42:37 -42877.684597] Model parameter optimization (eps = 10.000000)
[05:42:48 -42774.381452] AUTODETECT spr round 1 (radius: 5)
[05:43:20 -28701.917179] AUTODETECT spr round 2 (radius: 10)
[05:43:56 -20759.660206] AUTODETECT spr round 3 (radius: 15)
[05:44:36 -17261.190018] AUTODETECT spr round 4 (radius: 20)
[05:45:20 -14744.513171] AUTODETECT spr round 5 (radius: 25)
[05:46:12 -14078.277681] SPR radius for FAST iterations: 25 (autodetect)
[05:46:12 -14078.277681] Model parameter optimization (eps = 3.000000)
[05:46:21 -14037.853577] FAST spr round 1 (radius: 25)
[05:47:01 -11869.431403] FAST spr round 2 (radius: 25)
[05:47:36 -11698.663900] FAST spr round 3 (radius: 25)
[05:48:10 -11682.832594] FAST spr round 4 (radius: 25)
[05:48:42 -11681.838089] FAST spr round 5 (radius: 25)
[05:49:14 -11681.767652] Model parameter optimization (eps = 1.000000)
[05:49:19 -11680.367334] SLOW spr round 1 (radius: 5)
[05:49:52 -11672.935266] SLOW spr round 2 (radius: 5)
[05:50:25 -11672.370953] SLOW spr round 3 (radius: 5)
[05:50:57 -11672.370813] SLOW spr round 4 (radius: 10)
[05:51:33 -11661.190509] SLOW spr round 5 (radius: 5)
[05:52:11 -11660.875511] SLOW spr round 6 (radius: 5)
[05:52:47 -11659.130842] SLOW spr round 7 (radius: 5)
[05:53:21 -11658.864670] SLOW spr round 8 (radius: 5)
[05:53:54 -11658.721596] SLOW spr round 9 (radius: 5)
[05:54:26 -11658.721501] SLOW spr round 10 (radius: 10)
[05:55:02 -11657.002906] SLOW spr round 11 (radius: 5)
[05:55:40 -11657.002052] SLOW spr round 12 (radius: 10)
[05:56:17 -11656.137369] SLOW spr round 13 (radius: 5)
[05:56:55 -11656.086074] SLOW spr round 14 (radius: 10)
[05:57:32 -11656.085764] SLOW spr round 15 (radius: 15)
[05:58:16 -11653.390870] SLOW spr round 16 (radius: 5)
[05:58:56 -11653.389896] SLOW spr round 17 (radius: 10)
[05:59:35 -11653.389546] SLOW spr round 18 (radius: 15)
[06:00:19 -11650.594597] SLOW spr round 19 (radius: 5)
[06:01:00 -11650.593998] SLOW spr round 20 (radius: 10)
[06:01:39 -11650.593745] SLOW spr round 21 (radius: 15)
[06:02:22 -11650.593496] SLOW spr round 22 (radius: 20)
[06:03:12 -11648.101775] SLOW spr round 23 (radius: 5)
[06:03:53 -11648.101354] SLOW spr round 24 (radius: 10)
[06:04:33 -11648.101093] SLOW spr round 25 (radius: 15)
[06:05:16 -11648.100825] SLOW spr round 26 (radius: 20)
[06:06:06 -11648.100553] SLOW spr round 27 (radius: 25)
[06:07:01 -11648.100278] Model parameter optimization (eps = 0.100000)

[06:07:07] ML tree search #13, logLikelihood: -11647.991531

[06:07:07 -54941.636944] Initial branch length optimization
[06:07:07 -43427.915900] Model parameter optimization (eps = 10.000000)
[06:07:18 -43276.871555] AUTODETECT spr round 1 (radius: 5)
[06:07:51 -28512.009286] AUTODETECT spr round 2 (radius: 10)
[06:08:26 -20312.373171] AUTODETECT spr round 3 (radius: 15)
[06:09:05 -16883.765717] AUTODETECT spr round 4 (radius: 20)
[06:09:50 -14844.275713] AUTODETECT spr round 5 (radius: 25)
[06:10:37 -13914.124199] SPR radius for FAST iterations: 25 (autodetect)
[06:10:37 -13914.124199] Model parameter optimization (eps = 3.000000)
[06:10:50 -13869.924792] FAST spr round 1 (radius: 25)
[06:11:32 -11759.185208] FAST spr round 2 (radius: 25)
[06:12:09 -11521.714591] FAST spr round 3 (radius: 25)
[06:12:42 -11511.909576] FAST spr round 4 (radius: 25)
[06:13:14 -11511.778737] FAST spr round 5 (radius: 25)
[06:13:45 -11511.776258] Model parameter optimization (eps = 1.000000)
[06:13:56 -11506.741796] SLOW spr round 1 (radius: 5)
[06:14:29 -11501.553350] SLOW spr round 2 (radius: 5)
[06:15:02 -11500.098511] SLOW spr round 3 (radius: 5)
[06:15:35 -11495.908043] SLOW spr round 4 (radius: 5)
[06:16:08 -11495.907851] SLOW spr round 5 (radius: 10)
[06:16:43 -11495.513508] SLOW spr round 6 (radius: 5)
[06:17:22 -11495.513316] SLOW spr round 7 (radius: 10)
[06:18:00 -11492.172930] SLOW spr round 8 (radius: 5)
[06:18:38 -11433.642062] SLOW spr round 9 (radius: 5)
[06:19:12 -11433.641127] SLOW spr round 10 (radius: 10)
[06:19:49 -11433.575573] SLOW spr round 11 (radius: 15)
[06:20:34 -11397.142565] SLOW spr round 12 (radius: 5)
[06:21:14 -11396.857704] SLOW spr round 13 (radius: 5)
[06:21:51 -11396.857433] SLOW spr round 14 (radius: 10)
[06:22:28 -11395.280554] SLOW spr round 15 (radius: 5)
[06:23:05 -11395.249332] SLOW spr round 16 (radius: 10)
[06:23:42 -11388.640513] SLOW spr round 17 (radius: 5)
[06:24:20 -11388.640491] SLOW spr round 18 (radius: 10)
[06:24:56 -11388.640471] SLOW spr round 19 (radius: 15)
[06:25:41 -11387.018018] SLOW spr round 20 (radius: 5)
[06:26:21 -11386.354227] SLOW spr round 21 (radius: 5)
[06:26:56 -11385.480179] SLOW spr round 22 (radius: 5)
[06:27:29 -11385.480047] SLOW spr round 23 (radius: 10)
[06:28:04 -11385.480042] SLOW spr round 24 (radius: 15)
[06:28:50 -11380.953575] SLOW spr round 25 (radius: 5)
[06:29:29 -11379.701369] SLOW spr round 26 (radius: 5)
[06:30:05 -11379.700594] SLOW spr round 27 (radius: 10)
[06:30:40 -11379.700563] SLOW spr round 28 (radius: 15)
[06:31:26 -11379.700546] SLOW spr round 29 (radius: 20)
[06:32:16 -11376.736713] SLOW spr round 30 (radius: 5)
[06:32:57 -11376.736711] SLOW spr round 31 (radius: 10)
[06:33:36 -11376.736711] SLOW spr round 32 (radius: 15)
[06:34:21 -11376.736711] SLOW spr round 33 (radius: 20)
[06:35:12 -11376.736711] SLOW spr round 34 (radius: 25)
[06:36:03 -11376.736711] Model parameter optimization (eps = 0.100000)

[06:36:08] ML tree search #14, logLikelihood: -11376.544215

[06:36:08 -55203.363985] Initial branch length optimization
[06:36:09 -43371.586017] Model parameter optimization (eps = 10.000000)
[06:36:22 -43202.022466] AUTODETECT spr round 1 (radius: 5)
[06:36:54 -28660.953608] AUTODETECT spr round 2 (radius: 10)
[06:37:31 -22308.139678] AUTODETECT spr round 3 (radius: 15)
[06:38:12 -17162.135025] AUTODETECT spr round 4 (radius: 20)
[06:38:56 -15734.484376] AUTODETECT spr round 5 (radius: 25)
[06:39:50 -14376.595902] SPR radius for FAST iterations: 25 (autodetect)
[06:39:50 -14376.595902] Model parameter optimization (eps = 3.000000)
[06:40:00 -14325.941046] FAST spr round 1 (radius: 25)
[06:40:41 -11682.874436] FAST spr round 2 (radius: 25)
[06:41:17 -11543.176610] FAST spr round 3 (radius: 25)
[06:41:51 -11532.765467] FAST spr round 4 (radius: 25)
[06:42:23 -11531.825228] FAST spr round 5 (radius: 25)
[06:42:55 -11531.824627] Model parameter optimization (eps = 1.000000)
[06:43:03 -11527.850671] SLOW spr round 1 (radius: 5)
[06:43:37 -11525.767090] SLOW spr round 2 (radius: 5)
[06:44:10 -11525.465335] SLOW spr round 3 (radius: 5)
[06:44:43 -11525.464878] SLOW spr round 4 (radius: 10)
[06:45:18 -11522.146836] SLOW spr round 5 (radius: 5)
[06:45:56 -11522.138964] SLOW spr round 6 (radius: 10)
[06:46:34 -11522.138706] SLOW spr round 7 (radius: 15)
[06:47:20 -11487.861786] SLOW spr round 8 (radius: 5)
[06:48:00 -11487.794126] SLOW spr round 9 (radius: 10)
[06:48:40 -11486.513587] SLOW spr round 10 (radius: 5)
[06:49:18 -11485.939202] SLOW spr round 11 (radius: 5)
[06:49:51 -11485.939200] SLOW spr round 12 (radius: 10)
[06:50:27 -11485.939200] SLOW spr round 13 (radius: 15)
[06:51:13 -11485.939200] SLOW spr round 14 (radius: 20)
[06:52:08 -11480.537216] SLOW spr round 15 (radius: 5)
[06:52:51 -11475.816404] SLOW spr round 16 (radius: 5)
[06:53:28 -11475.126087] SLOW spr round 17 (radius: 5)
[06:54:02 -11475.125371] SLOW spr round 18 (radius: 10)
[06:54:37 -11475.125252] SLOW spr round 19 (radius: 15)
[06:55:24 -11475.125228] SLOW spr round 20 (radius: 20)
[06:56:18 -11475.125223] SLOW spr round 21 (radius: 25)
[06:57:20 -11472.942879] SLOW spr round 22 (radius: 5)
[06:58:02 -11469.710249] SLOW spr round 23 (radius: 5)
[06:58:40 -11469.698248] SLOW spr round 24 (radius: 10)
[06:59:16 -11469.472040] SLOW spr round 25 (radius: 5)
[06:59:54 -11469.471951] SLOW spr round 26 (radius: 10)
[07:00:31 -11469.471946] SLOW spr round 27 (radius: 15)
[07:01:17 -11469.471945] SLOW spr round 28 (radius: 20)
[07:02:11 -11469.471945] SLOW spr round 29 (radius: 25)
[07:03:12 -11469.471945] Model parameter optimization (eps = 0.100000)

[07:03:17] ML tree search #15, logLikelihood: -11469.248629

[07:03:17 -55171.553107] Initial branch length optimization
[07:03:17 -43368.597866] Model parameter optimization (eps = 10.000000)
[07:03:29 -43267.764992] AUTODETECT spr round 1 (radius: 5)
[07:04:02 -27665.115879] AUTODETECT spr round 2 (radius: 10)
[07:04:38 -20508.964229] AUTODETECT spr round 3 (radius: 15)
[07:05:18 -15745.276104] AUTODETECT spr round 4 (radius: 20)
[07:06:00 -14783.411294] AUTODETECT spr round 5 (radius: 25)
[07:06:46 -14156.044254] SPR radius for FAST iterations: 25 (autodetect)
[07:06:46 -14156.044254] Model parameter optimization (eps = 3.000000)
[07:06:54 -14119.727941] FAST spr round 1 (radius: 25)
[07:07:36 -11653.762012] FAST spr round 2 (radius: 25)
[07:08:13 -11383.266273] FAST spr round 3 (radius: 25)
[07:08:47 -11354.860138] FAST spr round 4 (radius: 25)
[07:09:18 -11353.450197] FAST spr round 5 (radius: 25)
[07:09:49 -11353.189463] FAST spr round 6 (radius: 25)
[07:10:20 -11353.188684] Model parameter optimization (eps = 1.000000)
[07:10:26 -11349.796050] SLOW spr round 1 (radius: 5)
[07:10:58 -11344.890995] SLOW spr round 2 (radius: 5)
[07:11:31 -11344.196232] SLOW spr round 3 (radius: 5)
[07:12:03 -11343.873666] SLOW spr round 4 (radius: 5)
[07:12:36 -11343.873376] SLOW spr round 5 (radius: 10)
[07:13:13 -11284.136171] SLOW spr round 6 (radius: 5)
[07:13:51 -11280.894518] SLOW spr round 7 (radius: 5)
[07:14:26 -11280.072485] SLOW spr round 8 (radius: 5)
[07:14:59 -11277.325654] SLOW spr round 9 (radius: 5)
[07:15:31 -11277.325478] SLOW spr round 10 (radius: 10)
[07:16:06 -11277.325250] SLOW spr round 11 (radius: 15)
[07:16:53 -11276.765508] SLOW spr round 12 (radius: 5)
[07:17:32 -11276.765319] SLOW spr round 13 (radius: 10)
[07:18:11 -11270.506763] SLOW spr round 14 (radius: 5)
[07:18:48 -11270.504750] SLOW spr round 15 (radius: 10)
[07:19:24 -11270.504621] SLOW spr round 16 (radius: 15)
[07:20:10 -11270.504585] SLOW spr round 17 (radius: 20)
[07:21:04 -11270.504571] SLOW spr round 18 (radius: 25)
[07:21:59 -11270.504535] Model parameter optimization (eps = 0.100000)

[07:22:05] ML tree search #16, logLikelihood: -11270.318760

[07:22:05 -54959.824475] Initial branch length optimization
[07:22:06 -42944.627886] Model parameter optimization (eps = 10.000000)
[07:22:18 -42776.056525] AUTODETECT spr round 1 (radius: 5)
[07:22:50 -26915.102532] AUTODETECT spr round 2 (radius: 10)
[07:23:25 -20723.740459] AUTODETECT spr round 3 (radius: 15)
[07:24:05 -16944.742998] AUTODETECT spr round 4 (radius: 20)
[07:24:47 -15066.912024] AUTODETECT spr round 5 (radius: 25)
[07:25:31 -13989.293458] SPR radius for FAST iterations: 25 (autodetect)
[07:25:31 -13989.293458] Model parameter optimization (eps = 3.000000)
[07:25:40 -13938.218058] FAST spr round 1 (radius: 25)
[07:26:21 -11518.660187] FAST spr round 2 (radius: 25)
[07:26:57 -11439.447774] FAST spr round 3 (radius: 25)
[07:27:30 -11433.394965] FAST spr round 4 (radius: 25)
[07:28:01 -11433.394909] Model parameter optimization (eps = 1.000000)
[07:28:07 -11431.477939] SLOW spr round 1 (radius: 5)
[07:28:40 -11426.403310] SLOW spr round 2 (radius: 5)
[07:29:11 -11426.369179] SLOW spr round 3 (radius: 10)
[07:29:47 -11422.311417] SLOW spr round 4 (radius: 5)
[07:30:25 -11420.407742] SLOW spr round 5 (radius: 5)
[07:30:59 -11419.783201] SLOW spr round 6 (radius: 5)
[07:31:31 -11419.782971] SLOW spr round 7 (radius: 10)
[07:32:06 -11418.600250] SLOW spr round 8 (radius: 5)
[07:32:43 -11418.598918] SLOW spr round 9 (radius: 10)
[07:33:20 -11412.218230] SLOW spr round 10 (radius: 5)
[07:33:58 -11406.612331] SLOW spr round 11 (radius: 5)
[07:34:32 -11406.611029] SLOW spr round 12 (radius: 10)
[07:35:07 -11406.610995] SLOW spr round 13 (radius: 15)
[07:35:52 -11404.957932] SLOW spr round 14 (radius: 5)
[07:36:31 -11404.956833] SLOW spr round 15 (radius: 10)
[07:37:08 -11404.956630] SLOW spr round 16 (radius: 15)
[07:37:53 -11404.956593] SLOW spr round 17 (radius: 20)
[07:38:44 -11403.260982] SLOW spr round 18 (radius: 5)
[07:39:24 -11403.259464] SLOW spr round 19 (radius: 10)
[07:40:04 -11402.290907] SLOW spr round 20 (radius: 5)
[07:40:41 -11401.215032] SLOW spr round 21 (radius: 5)
[07:41:16 -11397.922831] SLOW spr round 22 (radius: 5)
[07:41:49 -11397.922780] SLOW spr round 23 (radius: 10)
[07:42:24 -11392.396309] SLOW spr round 24 (radius: 5)
[07:43:03 -11387.781932] SLOW spr round 25 (radius: 5)
[07:43:37 -11384.119398] SLOW spr round 26 (radius: 5)
[07:44:10 -11384.119373] SLOW spr round 27 (radius: 10)
[07:44:45 -11384.119373] SLOW spr round 28 (radius: 15)
[07:45:31 -11384.119373] SLOW spr round 29 (radius: 20)
[07:46:22 -11379.055401] SLOW spr round 30 (radius: 5)
[07:47:02 -11379.043222] SLOW spr round 31 (radius: 10)
[07:47:41 -11379.043038] SLOW spr round 32 (radius: 15)
[07:48:26 -11379.043032] SLOW spr round 33 (radius: 20)
[07:49:15 -11379.043032] SLOW spr round 34 (radius: 25)
[07:50:08 -11355.081339] SLOW spr round 35 (radius: 5)
[07:50:50 -11301.023509] SLOW spr round 36 (radius: 5)
[07:51:27 -11301.023353] SLOW spr round 37 (radius: 10)
[07:52:02 -11301.023352] SLOW spr round 38 (radius: 15)
[07:52:48 -11301.023352] SLOW spr round 39 (radius: 20)
[07:53:40 -11299.997481] SLOW spr round 40 (radius: 5)
[07:54:20 -11299.072751] SLOW spr round 41 (radius: 5)
[07:54:56 -11299.072450] SLOW spr round 42 (radius: 10)
[07:55:32 -11299.072414] SLOW spr round 43 (radius: 15)
[07:56:17 -11299.072408] SLOW spr round 44 (radius: 20)
[07:57:07 -11299.072407] SLOW spr round 45 (radius: 25)
[07:58:00 -11299.072406] Model parameter optimization (eps = 0.100000)

[07:58:04] ML tree search #17, logLikelihood: -11298.754569

[07:58:04 -54746.171770] Initial branch length optimization
[07:58:05 -43301.804514] Model parameter optimization (eps = 10.000000)
[07:58:18 -43193.525112] AUTODETECT spr round 1 (radius: 5)
[07:58:50 -28529.917533] AUTODETECT spr round 2 (radius: 10)
[07:59:26 -20665.519425] AUTODETECT spr round 3 (radius: 15)
[08:00:08 -16547.286392] AUTODETECT spr round 4 (radius: 20)
[08:00:54 -15707.116172] AUTODETECT spr round 5 (radius: 25)
[08:01:47 -14927.826734] SPR radius for FAST iterations: 25 (autodetect)
[08:01:47 -14927.826734] Model parameter optimization (eps = 3.000000)
[08:01:54 -14889.304324] FAST spr round 1 (radius: 25)
[08:02:35 -12456.404545] FAST spr round 2 (radius: 25)
[08:03:11 -12171.796115] FAST spr round 3 (radius: 25)
[08:03:46 -12142.401827] FAST spr round 4 (radius: 25)
[08:04:19 -12140.738423] FAST spr round 5 (radius: 25)
[08:04:50 -12140.738294] Model parameter optimization (eps = 1.000000)
[08:04:57 -12138.403039] SLOW spr round 1 (radius: 5)
[08:05:31 -12133.244850] SLOW spr round 2 (radius: 5)
[08:06:05 -12130.905513] SLOW spr round 3 (radius: 5)
[08:06:38 -12130.886129] SLOW spr round 4 (radius: 10)
[08:07:14 -12128.805463] SLOW spr round 5 (radius: 5)
[08:07:54 -12127.840286] SLOW spr round 6 (radius: 5)
[08:08:30 -12126.873087] SLOW spr round 7 (radius: 5)
[08:09:04 -12126.872863] SLOW spr round 8 (radius: 10)
[08:09:40 -12126.872768] SLOW spr round 9 (radius: 15)
[08:10:29 -12126.872681] SLOW spr round 10 (radius: 20)
[08:11:28 -11995.603008] SLOW spr round 11 (radius: 5)
[08:12:10 -11995.495617] SLOW spr round 12 (radius: 5)
[08:12:48 -11995.494074] SLOW spr round 13 (radius: 10)
[08:13:25 -11993.929464] SLOW spr round 14 (radius: 5)
[08:14:04 -11993.928506] SLOW spr round 15 (radius: 10)
[08:14:42 -11993.928460] SLOW spr round 16 (radius: 15)
[08:15:31 -11985.649354] SLOW spr round 17 (radius: 5)
[08:16:13 -11928.574261] SLOW spr round 18 (radius: 5)
[08:16:51 -11921.929266] SLOW spr round 19 (radius: 5)
[08:17:27 -11921.562743] SLOW spr round 20 (radius: 5)
[08:18:00 -11921.561965] SLOW spr round 21 (radius: 10)
[08:18:36 -11921.561943] SLOW spr round 22 (radius: 15)
[08:19:25 -11921.561942] SLOW spr round 23 (radius: 20)
[08:20:25 -11647.102824] SLOW spr round 24 (radius: 5)
[08:21:08 -11607.345904] SLOW spr round 25 (radius: 5)
[08:21:45 -11607.344747] SLOW spr round 26 (radius: 10)
[08:22:22 -11605.922268] SLOW spr round 27 (radius: 5)
[08:23:01 -11605.044608] SLOW spr round 28 (radius: 5)
[08:23:35 -11604.316079] SLOW spr round 29 (radius: 5)
[08:24:08 -11604.312649] SLOW spr round 30 (radius: 10)
[08:24:44 -11604.312537] SLOW spr round 31 (radius: 15)
[08:25:31 -11604.117533] SLOW spr round 32 (radius: 5)
[08:26:11 -11604.102459] SLOW spr round 33 (radius: 10)
[08:26:50 -11604.005938] SLOW spr round 34 (radius: 15)
[08:27:37 -11604.004256] SLOW spr round 35 (radius: 20)
[08:28:32 -11602.739874] SLOW spr round 36 (radius: 5)
[08:29:14 -11602.540496] SLOW spr round 37 (radius: 5)
[08:29:50 -11602.540486] SLOW spr round 38 (radius: 10)
[08:30:26 -11602.540483] SLOW spr round 39 (radius: 15)
[08:31:13 -11602.540482] SLOW spr round 40 (radius: 20)
[08:32:09 -11602.540482] SLOW spr round 41 (radius: 25)
[08:33:09 -11600.374898] SLOW spr round 42 (radius: 5)
[08:33:52 -11599.381376] SLOW spr round 43 (radius: 5)
[08:34:29 -11598.255148] SLOW spr round 44 (radius: 5)
[08:35:03 -11598.253247] SLOW spr round 45 (radius: 10)
[08:35:39 -11598.122337] SLOW spr round 46 (radius: 5)
[08:36:17 -11598.122303] SLOW spr round 47 (radius: 10)
[08:36:54 -11598.122300] SLOW spr round 48 (radius: 15)
[08:37:40 -11598.122299] SLOW spr round 49 (radius: 20)
[08:38:33 -11559.584326] SLOW spr round 50 (radius: 5)
[08:39:14 -11559.584171] SLOW spr round 51 (radius: 10)
[08:39:55 -11533.483429] SLOW spr round 52 (radius: 5)
[08:40:33 -11533.482208] SLOW spr round 53 (radius: 10)
[08:41:10 -11533.338646] SLOW spr round 54 (radius: 5)
[08:41:48 -11533.338020] SLOW spr round 55 (radius: 10)
[08:42:25 -11533.337946] SLOW spr round 56 (radius: 15)
[08:43:10 -11533.337890] SLOW spr round 57 (radius: 20)
[08:44:03 -11533.337836] SLOW spr round 58 (radius: 25)
[08:45:00 -11533.337782] Model parameter optimization (eps = 0.100000)

[08:45:08] ML tree search #18, logLikelihood: -11532.464902

[08:45:08 -54828.651340] Initial branch length optimization
[08:45:09 -43231.200289] Model parameter optimization (eps = 10.000000)
[08:45:22 -43078.831543] AUTODETECT spr round 1 (radius: 5)
[08:45:55 -28397.620925] AUTODETECT spr round 2 (radius: 10)
[08:46:31 -23057.095875] AUTODETECT spr round 3 (radius: 15)
[08:47:14 -17013.521000] AUTODETECT spr round 4 (radius: 20)
[08:48:00 -15758.333394] AUTODETECT spr round 5 (radius: 25)
[08:48:48 -14449.387001] SPR radius for FAST iterations: 25 (autodetect)
[08:48:48 -14449.387001] Model parameter optimization (eps = 3.000000)
[08:48:56 -14407.803571] FAST spr round 1 (radius: 25)
[08:49:38 -12012.898488] FAST spr round 2 (radius: 25)
[08:50:14 -11818.985045] FAST spr round 3 (radius: 25)
[08:50:47 -11810.935485] FAST spr round 4 (radius: 25)
[08:51:19 -11810.808796] FAST spr round 5 (radius: 25)
[08:51:51 -11810.808420] Model parameter optimization (eps = 1.000000)
[08:51:58 -11809.082818] SLOW spr round 1 (radius: 5)
[08:52:31 -11805.940990] SLOW spr round 2 (radius: 5)
[08:53:03 -11805.938706] SLOW spr round 3 (radius: 10)
[08:53:39 -11804.740209] SLOW spr round 4 (radius: 5)
[08:54:17 -11804.739866] SLOW spr round 5 (radius: 10)
[08:54:54 -11799.555878] SLOW spr round 6 (radius: 5)
[08:55:33 -11797.502376] SLOW spr round 7 (radius: 5)
[08:56:08 -11796.819679] SLOW spr round 8 (radius: 5)
[08:56:40 -11796.819627] SLOW spr round 9 (radius: 10)
[08:57:15 -11796.819627] SLOW spr round 10 (radius: 15)
[08:58:03 -11793.577459] SLOW spr round 11 (radius: 5)
[08:58:44 -11793.425872] SLOW spr round 12 (radius: 5)
[08:59:21 -11793.425596] SLOW spr round 13 (radius: 10)
[08:59:57 -11792.237192] SLOW spr round 14 (radius: 5)
[09:00:35 -11792.237153] SLOW spr round 15 (radius: 10)
[09:01:12 -11791.593237] SLOW spr round 16 (radius: 5)
[09:01:50 -11791.592933] SLOW spr round 17 (radius: 10)
[09:02:27 -11791.592928] SLOW spr round 18 (radius: 15)
[09:03:14 -11791.592927] SLOW spr round 19 (radius: 20)
[09:04:10 -11791.175693] SLOW spr round 20 (radius: 5)
[09:04:51 -11791.174048] SLOW spr round 21 (radius: 10)
[09:05:30 -11791.173968] SLOW spr round 22 (radius: 15)
[09:06:17 -11791.173964] SLOW spr round 23 (radius: 20)
[09:07:13 -11791.173963] SLOW spr round 24 (radius: 25)
[09:08:14 -11746.554656] SLOW spr round 25 (radius: 5)
[09:08:57 -11642.603852] SLOW spr round 26 (radius: 5)
[09:09:36 -11513.199756] SLOW spr round 27 (radius: 5)
[09:10:11 -11507.188889] SLOW spr round 28 (radius: 5)
[09:10:43 -11507.188013] SLOW spr round 29 (radius: 10)
[09:11:19 -11430.920294] SLOW spr round 30 (radius: 5)
[09:11:59 -11320.754287] SLOW spr round 31 (radius: 5)
[09:12:33 -11320.753759] SLOW spr round 32 (radius: 10)
[09:13:09 -11320.753744] SLOW spr round 33 (radius: 15)
[09:13:56 -11317.848763] SLOW spr round 34 (radius: 5)
[09:14:35 -11317.848705] SLOW spr round 35 (radius: 10)
[09:15:15 -11314.336668] SLOW spr round 36 (radius: 5)
[09:15:53 -11313.362398] SLOW spr round 37 (radius: 5)
[09:16:27 -11313.360477] SLOW spr round 38 (radius: 10)
[09:17:02 -11313.360473] SLOW spr round 39 (radius: 15)
[09:17:48 -11311.191893] SLOW spr round 40 (radius: 5)
[09:18:28 -11310.385281] SLOW spr round 41 (radius: 5)
[09:19:04 -11310.384160] SLOW spr round 42 (radius: 10)
[09:19:40 -11310.384098] SLOW spr round 43 (radius: 15)
[09:20:24 -11310.384093] SLOW spr round 44 (radius: 20)
[09:21:14 -11310.384093] SLOW spr round 45 (radius: 25)
[09:22:09 -11309.760820] SLOW spr round 46 (radius: 5)
[09:22:51 -11308.548876] SLOW spr round 47 (radius: 5)
[09:23:27 -11308.548074] SLOW spr round 48 (radius: 10)
[09:24:03 -11308.547974] SLOW spr round 49 (radius: 15)
[09:24:47 -11308.547954] SLOW spr round 50 (radius: 20)
[09:25:37 -11308.547951] SLOW spr round 51 (radius: 25)
[09:26:31 -11308.547950] Model parameter optimization (eps = 0.100000)

[09:26:38] ML tree search #19, logLikelihood: -11307.938762

[09:26:38 -54682.894607] Initial branch length optimization
[09:26:39 -43079.963884] Model parameter optimization (eps = 10.000000)
[09:26:53 -42932.579714] AUTODETECT spr round 1 (radius: 5)
[09:27:26 -28884.762149] AUTODETECT spr round 2 (radius: 10)
[09:28:01 -20989.579503] AUTODETECT spr round 3 (radius: 15)
[09:28:40 -17924.553089] AUTODETECT spr round 4 (radius: 20)
[09:29:26 -16403.753815] AUTODETECT spr round 5 (radius: 25)
[09:30:17 -14340.861629] SPR radius for FAST iterations: 25 (autodetect)
[09:30:17 -14340.861629] Model parameter optimization (eps = 3.000000)
[09:30:32 -14298.013688] FAST spr round 1 (radius: 25)
[09:31:16 -12261.189058] FAST spr round 2 (radius: 25)
[09:31:53 -12094.923933] FAST spr round 3 (radius: 25)
[09:32:27 -12086.765439] FAST spr round 4 (radius: 25)
[09:32:59 -12086.764066] Model parameter optimization (eps = 1.000000)
[09:33:05 -12085.510631] SLOW spr round 1 (radius: 5)
[09:33:39 -12083.677655] SLOW spr round 2 (radius: 5)
[09:34:11 -12083.668657] SLOW spr round 3 (radius: 10)
[09:34:47 -12080.904037] SLOW spr round 4 (radius: 5)
[09:35:25 -12080.903745] SLOW spr round 5 (radius: 10)
[09:36:02 -12080.801708] SLOW spr round 6 (radius: 5)
[09:36:40 -12080.801664] SLOW spr round 7 (radius: 10)
[09:37:17 -12080.801634] SLOW spr round 8 (radius: 15)
[09:38:02 -12080.801605] SLOW spr round 9 (radius: 20)
[09:38:54 -12079.025955] SLOW spr round 10 (radius: 5)
[09:39:35 -12079.025881] SLOW spr round 11 (radius: 10)
[09:40:15 -12078.703495] SLOW spr round 12 (radius: 5)
[09:40:53 -12078.703454] SLOW spr round 13 (radius: 10)
[09:41:29 -12078.703430] SLOW spr round 14 (radius: 15)
[09:42:15 -12078.703407] SLOW spr round 15 (radius: 20)
[09:43:07 -12078.703383] SLOW spr round 16 (radius: 25)
[09:44:06 -12078.333729] SLOW spr round 17 (radius: 5)
[09:44:48 -12078.333706] SLOW spr round 18 (radius: 10)
[09:45:28 -12078.333683] SLOW spr round 19 (radius: 15)
[09:46:13 -12078.333661] SLOW spr round 20 (radius: 20)
[09:47:05 -12078.333638] SLOW spr round 21 (radius: 25)
[09:48:04 -12078.333616] Model parameter optimization (eps = 0.100000)

[09:48:09] ML tree search #20, logLikelihood: -12078.176359


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.132658,0.396043) (0.300293,0.418445) (0.397268,0.950718) (0.169782,2.615808) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -11270.318760

AIC score: 25074.637519 / AICc score: 3238186.637519 / BIC score: 27570.997374
Free parameters (model + branch lengths): 1267

WARNING: Number of free parameters (K=1267) is larger than alignment size (n=53).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 316 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H694/3_mltree/Q9H694.raxml.bestTreeCollapsed
Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H694/3_mltree/Q9H694.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H694/3_mltree/Q9H694.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H694/3_mltree/Q9H694.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H694/3_mltree/Q9H694.raxml.log

Analysis started: 09-Jul-2021 19:50:29 / finished: 10-Jul-2021 05:38:39

Elapsed time: 35290.134 seconds