RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 19-Jul-2021 13:42:24 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/2_msa/Q9H5P4_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/3_mltree/Q9H5P4.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/4_raxmlng_ancestral/Q9H5P4 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626691344 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/2_msa/Q9H5P4_nogap_msa.fasta [00:00:00] Loaded alignment with 978 taxa and 1033 sites WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_F6PUP7_F6PUP7_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_D3Z8K0_D3Z8K0_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A1U7R7R0_A0A1U7R7R0_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3XYN5_M3XYN5_MUSPF_9669 and tr_G1PHA5_G1PHA5_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3XYN5_M3XYN5_MUSPF_9669 and tr_G3I1F8_G3I1F8_CRIGR_10029 are exactly identical! WARNING: Sequences tr_M3XYN5_M3XYN5_MUSPF_9669 and tr_G1TD05_G1TD05_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3XYN5_M3XYN5_MUSPF_9669 and tr_J9NRG7_J9NRG7_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XYN5_M3XYN5_MUSPF_9669 and tr_W5Q220_W5Q220_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3XYN5_M3XYN5_MUSPF_9669 and tr_I3N6Q0_I3N6Q0_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3XYN5_M3XYN5_MUSPF_9669 and tr_H0XFC0_H0XFC0_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3XYN5_M3XYN5_MUSPF_9669 and sp_Q6QA76_PDZ11_PIG_9823 are exactly identical! WARNING: Sequences tr_M3XYN5_M3XYN5_MUSPF_9669 and tr_D2H899_D2H899_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XYN5_M3XYN5_MUSPF_9669 and sp_Q32LE7_PDZ11_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3XYN5_M3XYN5_MUSPF_9669 and tr_A0A2I2U069_A0A2I2U069_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XYN5_M3XYN5_MUSPF_9669 and tr_A0A091DH97_A0A091DH97_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3XYN5_M3XYN5_MUSPF_9669 and tr_A0A2U3YY08_A0A2U3YY08_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2I3G2R5_A0A2I3G2R5_NOMLE_61853 and tr_G3QUS8_G3QUS8_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3G2R5_A0A2I3G2R5_NOMLE_61853 and tr_A0A2J8UBE2_A0A2J8UBE2_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3G2R5_A0A2I3G2R5_NOMLE_61853 and tr_H2QYR4_H2QYR4_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3G2R5_A0A2I3G2R5_NOMLE_61853 and sp_Q5EBL8_PDZ11_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3G2R5_A0A2I3G2R5_NOMLE_61853 and tr_G7NRU3_G7NRU3_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3G2R5_A0A2I3G2R5_NOMLE_61853 and tr_F6QWC8_F6QWC8_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3G2R5_A0A2I3G2R5_NOMLE_61853 and tr_G7Q2Y7_G7Q2Y7_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3G2R5_A0A2I3G2R5_NOMLE_61853 and tr_A0A0D9RGT0_A0A0D9RGT0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3G2R5_A0A2I3G2R5_NOMLE_61853 and tr_A0A2K5MBT7_A0A2K5MBT7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3G2R5_A0A2I3G2R5_NOMLE_61853 and tr_A0A2K6CMC1_A0A2K6CMC1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3G2R5_A0A2I3G2R5_NOMLE_61853 and tr_A0A2K5ZH22_A0A2K5ZH22_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3G2R5_A0A2I3G2R5_NOMLE_61853 and tr_A0A2R9C4T3_A0A2R9C4T3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QYI7_G1QYI7_NOMLE_61853 and tr_A0A2J8U7Y0_A0A2J8U7Y0_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QYI7_G1QYI7_NOMLE_61853 and tr_K7D105_K7D105_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QYI7_G1QYI7_NOMLE_61853 and tr_I3NDK1_I3NDK1_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1QYI7_G1QYI7_NOMLE_61853 and tr_H0WTW8_H0WTW8_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1QYI7_G1QYI7_NOMLE_61853 and tr_H0UYM4_H0UYM4_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G1QYI7_G1QYI7_NOMLE_61853 and sp_Q9HAP6_LIN7B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QYI7_G1QYI7_NOMLE_61853 and tr_G3TBU6_G3TBU6_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1QYI7_G1QYI7_NOMLE_61853 and tr_U3D1I7_U3D1I7_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1QYI7_G1QYI7_NOMLE_61853 and tr_F1RIN6_F1RIN6_PIG_9823 are exactly identical! WARNING: Sequences tr_G1QYI7_G1QYI7_NOMLE_61853 and tr_M3WP58_M3WP58_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1QYI7_G1QYI7_NOMLE_61853 and tr_A0A0A0MXE5_A0A0A0MXE5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QYI7_G1QYI7_NOMLE_61853 and tr_A0A0D9S348_A0A0D9S348_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QYI7_G1QYI7_NOMLE_61853 and tr_A0A2K5L6B1_A0A2K5L6B1_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QYI7_G1QYI7_NOMLE_61853 and tr_A0A2K6CP96_A0A2K6CP96_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QYI7_G1QYI7_NOMLE_61853 and tr_A0A2U3WZK3_A0A2U3WZK3_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1QYI7_G1QYI7_NOMLE_61853 and tr_A0A2Y9LD54_A0A2Y9LD54_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I2ZQW6_A0A2I2ZQW6_GORGO_9595 and tr_A0A2K5YJ32_A0A2K5YJ32_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3SQG1_A0A2I3SQG1_PANTR_9598 and tr_A0A1D5Q4X6_A0A1D5Q4X6_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3SQG1_A0A2I3SQG1_PANTR_9598 and tr_A0A2I3M620_A0A2I3M620_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3SQG1_A0A2I3SQG1_PANTR_9598 and tr_A0A0D9S1V3_A0A0D9S1V3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3SQG1_A0A2I3SQG1_PANTR_9598 and tr_A0A2K6APC6_A0A2K6APC6_MACNE_9545 are exactly identical! WARNING: Sequences tr_K7B8A0_K7B8A0_PANTR_9598 and tr_A0A2R8ZNV2_A0A2R8ZNV2_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2TFY8_H2TFY8_TAKRU_31033 and tr_H3CEH8_H3CEH8_TETNG_99883 are exactly identical! WARNING: Sequences sp_Q9Y4G8_RPGF2_HUMAN_9606 and tr_G8F2H7_G8F2H7_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3T6V6_G3T6V6_LOXAF_9785 and tr_A0A2U3V9K9_A0A2U3V9K9_TURTR_9739 are exactly identical! WARNING: Sequences tr_G3T6V6_G3T6V6_LOXAF_9785 and tr_A0A2Y9MHR5_A0A2Y9MHR5_DELLE_9749 are exactly identical! WARNING: Sequences tr_G3T6V6_G3T6V6_LOXAF_9785 and tr_A0A2Y9FFT6_A0A2Y9FFT6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A091E9A5_A0A091E9A5_CORBR_85066 and tr_A0A093PSI2_A0A093PSI2_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091E9A5_A0A091E9A5_CORBR_85066 and tr_A0A093HYS9_A0A093HYS9_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091FVZ1_A0A091FVZ1_CORBR_85066 and tr_A0A093PN16_A0A093PN16_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091IU47_A0A091IU47_EGRGA_188379 and tr_A0A091V425_A0A091V425_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091IU47_A0A091IU47_EGRGA_188379 and tr_A0A087RIW2_A0A087RIW2_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091IU47_A0A091IU47_EGRGA_188379 and tr_A0A091IGT5_A0A091IGT5_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091IZ81_A0A091IZ81_EGRGA_188379 and tr_A0A087R9W9_A0A087R9W9_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091IZ81_A0A091IZ81_EGRGA_188379 and tr_A0A093JVB1_A0A093JVB1_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091IZ81_A0A091IZ81_EGRGA_188379 and tr_A0A091WAQ5_A0A091WAQ5_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091IZ81_A0A091IZ81_EGRGA_188379 and tr_A0A0A0B344_A0A0A0B344_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091J6H7_A0A091J6H7_EGRGA_188379 and tr_A0A091G610_A0A091G610_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A194RLK8_A0A194RLK8_PAPMA_76193 and tr_A0A194PFX9_A0A194PFX9_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A1D1VY41_A0A1D1VY41_RAMVA_947166 and tr_A0A1D1W1M7_A0A1D1W1M7_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A2D0RHM7_A0A2D0RHM7_ICTPU_7998 and tr_A0A2D0RJE3_A0A2D0RJE3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RHN1_A0A2D0RHN1_ICTPU_7998 and tr_A0A2D0RHN9_A0A2D0RHN9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RHN1_A0A2D0RHN1_ICTPU_7998 and tr_A0A2D0RJD8_A0A2D0RJD8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RY98_A0A2D0RY98_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RYA3_A0A2D0RYA3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RZ58_A0A2D0RZ58_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RZ63_A0A2D0RZ63_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RZT7_A0A2D0RZT7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RYA5_A0A2D0RYA5_ICTPU_7998 and tr_A0A2D0RZU2_A0A2D0RZU2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5NCL3_A0A2K5NCL3_CERAT_9531 and tr_A0A2K5XNW7_A0A2K5XNW7_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4AG23_A0A2U4AG23_TURTR_9739 and tr_A0A2Y9PMB0_A0A2Y9PMB0_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 79 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/4_raxmlng_ancestral/Q9H5P4.raxml.reduced.phy Alignment comprises 1 partitions and 1033 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 1033 Gaps: 54.36 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/4_raxmlng_ancestral/Q9H5P4.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/3_mltree/Q9H5P4.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 259 / 20720 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -351486.708440 [00:00:00 -351486.708440] Initial branch length optimization [00:00:02 -265574.591690] Model parameter optimization (eps = 0.100000) [00:01:21] Tree #1, final logLikelihood: -264799.239278 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.050873,0.229646) (0.050002,0.279223) (0.390400,0.692094) (0.508725,1.384169) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/4_raxmlng_ancestral/Q9H5P4.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/4_raxmlng_ancestral/Q9H5P4.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/4_raxmlng_ancestral/Q9H5P4.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/4_raxmlng_ancestral/Q9H5P4.raxml.log Analysis started: 19-Jul-2021 13:42:24 / finished: 19-Jul-2021 13:43:54 Elapsed time: 90.121 seconds