RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 17-Jul-2021 11:50:12 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/2_msa/Q9H5P4_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/3_mltree/Q9H5P4 --seed 2 --threads 1 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), NONE/sequential

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/2_msa/Q9H5P4_trimmed_msa.fasta
[00:00:00] Loaded alignment with 978 taxa and 62 sites

WARNING: Sequences tr_B4QJH3_B4QJH3_DROSI_7240 and tr_M9PF56_M9PF56_DROME_7227 are exactly identical!
WARNING: Sequences tr_B4QJH3_B4QJH3_DROSI_7240 and tr_B4HH88_B4HH88_DROSE_7238 are exactly identical!
WARNING: Sequences tr_B4QJH3_B4QJH3_DROSI_7240 and tr_A0A1W4UID3_A0A1W4UID3_DROFC_30025 are exactly identical!
WARNING: Sequences tr_E9HCW1_E9HCW1_DAPPU_6669 and tr_A0A162PRK9_A0A162PRK9_9CRUS_35525 are exactly identical!
WARNING: Sequences tr_E2A6G6_E2A6G6_CAMFO_104421 and tr_A0A158NRL7_A0A158NRL7_ATTCE_12957 are exactly identical!
WARNING: Sequences tr_E2A6G6_E2A6G6_CAMFO_104421 and tr_F4WBL6_F4WBL6_ACREC_103372 are exactly identical!
WARNING: Sequences tr_E2A6G6_E2A6G6_CAMFO_104421 and tr_A0A026WQZ2_A0A026WQZ2_OOCBI_2015173 are exactly identical!
WARNING: Sequences tr_E2A6G6_E2A6G6_CAMFO_104421 and tr_A0A151X5T9_A0A151X5T9_9HYME_64791 are exactly identical!
WARNING: Sequences tr_E2A6G6_E2A6G6_CAMFO_104421 and tr_A0A195DIC9_A0A195DIC9_9HYME_471704 are exactly identical!
WARNING: Sequences tr_E2A6G6_E2A6G6_CAMFO_104421 and tr_A0A195BCZ6_A0A195BCZ6_9HYME_520822 are exactly identical!
WARNING: Sequences tr_E2A6G6_E2A6G6_CAMFO_104421 and tr_A0A195FSU5_A0A195FSU5_9HYME_34720 are exactly identical!
WARNING: Sequences tr_E2A6G6_E2A6G6_CAMFO_104421 and tr_A0A151I784_A0A151I784_9HYME_456900 are exactly identical!
WARNING: Sequences tr_E2AQT5_E2AQT5_CAMFO_104421 and tr_A0A026X351_A0A026X351_OOCBI_2015173 are exactly identical!
WARNING: Sequences tr_E2AQT5_E2AQT5_CAMFO_104421 and tr_A0A151X083_A0A151X083_9HYME_64791 are exactly identical!
WARNING: Sequences tr_E2AQT5_E2AQT5_CAMFO_104421 and tr_A0A151IL88_A0A151IL88_9HYME_456900 are exactly identical!
WARNING: Sequences tr_A0A0R4IEP0_A0A0R4IEP0_DANRE_7955 and tr_W5K616_W5K616_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_A0A1D5PDU5_A0A1D5PDU5_CHICK_9031 and tr_G1MTB7_G1MTB7_MELGA_9103 are exactly identical!
WARNING: Sequences tr_A0A1D5PDU5_A0A1D5PDU5_CHICK_9031 and tr_A0A091VZ47_A0A091VZ47_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A1D5PLX5_A0A1D5PLX5_CHICK_9031 and tr_K7GDA8_K7GDA8_PELSI_13735 are exactly identical!
WARNING: Sequences tr_A0A1D5PLX5_A0A1D5PLX5_CHICK_9031 and tr_H0YY97_H0YY97_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_A0A1D5PLX5_A0A1D5PLX5_CHICK_9031 and tr_U3J764_U3J764_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_A0A1D5PLX5_A0A1D5PLX5_CHICK_9031 and tr_A0A0Q3MI58_A0A0Q3MI58_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_A0A1D5PLX5_A0A1D5PLX5_CHICK_9031 and tr_A0A091FN26_A0A091FN26_CORBR_85066 are exactly identical!
WARNING: Sequences tr_A0A1D5PLX5_A0A1D5PLX5_CHICK_9031 and tr_A0A091J2F8_A0A091J2F8_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_A0A1D5PLX5_A0A1D5PLX5_CHICK_9031 and tr_A0A091UIG9_A0A091UIG9_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A1D5PLX5_A0A1D5PLX5_CHICK_9031 and tr_A0A087R7Q7_A0A087R7Q7_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A1D5PLX5_A0A1D5PLX5_CHICK_9031 and tr_A0A093HG00_A0A093HG00_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A0A1D5PLX5_A0A1D5PLX5_CHICK_9031 and tr_A0A091W6U8_A0A091W6U8_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A1D5PLX5_A0A1D5PLX5_CHICK_9031 and tr_A0A099YUT3_A0A099YUT3_TINGU_94827 are exactly identical!
WARNING: Sequences tr_A0A1D5PLX5_A0A1D5PLX5_CHICK_9031 and tr_A0A091IZQ7_A0A091IZQ7_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A1D5PLX5_A0A1D5PLX5_CHICK_9031 and tr_A0A1V4J6L8_A0A1V4J6L8_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A1D5PLX5_A0A1D5PLX5_CHICK_9031 and tr_A0A218U9L4_A0A218U9L4_9PASE_299123 are exactly identical!
WARNING: Sequences tr_A0A1D5PLX5_A0A1D5PLX5_CHICK_9031 and tr_A0A226NGA9_A0A226NGA9_CALSU_9009 are exactly identical!
WARNING: Sequences tr_A0A1D5PLX5_A0A1D5PLX5_CHICK_9031 and tr_A0A226PKP9_A0A226PKP9_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A1D5PNF9_A0A1D5PNF9_CHICK_9031 and tr_G1N919_G1N919_MELGA_9103 are exactly identical!
WARNING: Sequences tr_A0A1D5PNF9_A0A1D5PNF9_CHICK_9031 and tr_A0A226MPR7_A0A226MPR7_CALSU_9009 are exactly identical!
WARNING: Sequences tr_A0A1D5PNF9_A0A1D5PNF9_CHICK_9031 and tr_A0A226PB46_A0A226PB46_COLVI_9014 are exactly identical!
WARNING: Sequences tr_E1C930_E1C930_CHICK_9031 and tr_G1N5I9_G1N5I9_MELGA_9103 are exactly identical!
WARNING: Sequences tr_E1C930_E1C930_CHICK_9031 and tr_A0A226PM64_A0A226PM64_COLVI_9014 are exactly identical!
WARNING: Sequences tr_F1NV17_F1NV17_CHICK_9031 and tr_G1NCU2_G1NCU2_MELGA_9103 are exactly identical!
WARNING: Sequences tr_F1NV17_F1NV17_CHICK_9031 and tr_H0ZIG0_H0ZIG0_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_F1NV17_F1NV17_CHICK_9031 and tr_U3K1Y9_U3K1Y9_FICAL_59894 are exactly identical!
WARNING: Sequences tr_F1NV17_F1NV17_CHICK_9031 and tr_A0A0Q3T9X1_A0A0Q3T9X1_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_F1NV17_F1NV17_CHICK_9031 and tr_A0A091EXI2_A0A091EXI2_CORBR_85066 are exactly identical!
WARNING: Sequences tr_F1NV17_F1NV17_CHICK_9031 and tr_A0A091JUR9_A0A091JUR9_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_F1NV17_F1NV17_CHICK_9031 and tr_A0A093PJ56_A0A093PJ56_9PASS_328815 are exactly identical!
WARNING: Sequences tr_F1NV17_F1NV17_CHICK_9031 and tr_A0A087QZA9_A0A087QZA9_APTFO_9233 are exactly identical!
WARNING: Sequences tr_F1NV17_F1NV17_CHICK_9031 and tr_A0A093H9E3_A0A093H9E3_STRCA_441894 are exactly identical!
WARNING: Sequences tr_F1NV17_F1NV17_CHICK_9031 and tr_A0A091G3X4_A0A091G3X4_9AVES_55661 are exactly identical!
WARNING: Sequences tr_F1NV17_F1NV17_CHICK_9031 and tr_A0A0A0A013_A0A0A0A013_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_F1NV17_F1NV17_CHICK_9031 and tr_A0A2I0LGP6_A0A2I0LGP6_COLLI_8932 are exactly identical!
WARNING: Sequences tr_F1NV17_F1NV17_CHICK_9031 and tr_A0A093H6I3_A0A093H6I3_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_F1NV17_F1NV17_CHICK_9031 and tr_A0A091HSY3_A0A091HSY3_CALAN_9244 are exactly identical!
WARNING: Sequences tr_F1NV17_F1NV17_CHICK_9031 and tr_A0A1V4KIL2_A0A1V4KIL2_PATFA_372326 are exactly identical!
WARNING: Sequences tr_F1NV17_F1NV17_CHICK_9031 and tr_A0A218V8I7_A0A218V8I7_9PASE_299123 are exactly identical!
WARNING: Sequences tr_F1NV17_F1NV17_CHICK_9031 and tr_A0A226NIT8_A0A226NIT8_CALSU_9009 are exactly identical!
WARNING: Sequences tr_F1NV17_F1NV17_CHICK_9031 and tr_A0A226PQX6_A0A226PQX6_COLVI_9014 are exactly identical!
WARNING: Sequences sp_Q5ZIK2_PDZ11_CHICK_9031 and tr_G1MRU8_G1MRU8_MELGA_9103 are exactly identical!
WARNING: Sequences sp_Q5ZIK2_PDZ11_CHICK_9031 and tr_H0YWL8_H0YWL8_TAEGU_59729 are exactly identical!
WARNING: Sequences sp_Q5ZIK2_PDZ11_CHICK_9031 and tr_U3JND2_U3JND2_FICAL_59894 are exactly identical!
WARNING: Sequences sp_Q5ZIK2_PDZ11_CHICK_9031 and tr_A0A151NP26_A0A151NP26_ALLMI_8496 are exactly identical!
WARNING: Sequences sp_Q5ZIK2_PDZ11_CHICK_9031 and tr_A0A0Q3M215_A0A0Q3M215_AMAAE_12930 are exactly identical!
WARNING: Sequences sp_Q5ZIK2_PDZ11_CHICK_9031 and tr_A0A091E9A5_A0A091E9A5_CORBR_85066 are exactly identical!
WARNING: Sequences sp_Q5ZIK2_PDZ11_CHICK_9031 and tr_A0A091IU47_A0A091IU47_EGRGA_188379 are exactly identical!
WARNING: Sequences sp_Q5ZIK2_PDZ11_CHICK_9031 and tr_A0A093PSI2_A0A093PSI2_9PASS_328815 are exactly identical!
WARNING: Sequences sp_Q5ZIK2_PDZ11_CHICK_9031 and tr_A0A091V425_A0A091V425_NIPNI_128390 are exactly identical!
WARNING: Sequences sp_Q5ZIK2_PDZ11_CHICK_9031 and tr_A0A087RIW2_A0A087RIW2_APTFO_9233 are exactly identical!
WARNING: Sequences sp_Q5ZIK2_PDZ11_CHICK_9031 and tr_A0A093HYS9_A0A093HYS9_STRCA_441894 are exactly identical!
WARNING: Sequences sp_Q5ZIK2_PDZ11_CHICK_9031 and tr_A0A099ZDX0_A0A099ZDX0_TINGU_94827 are exactly identical!
WARNING: Sequences sp_Q5ZIK2_PDZ11_CHICK_9031 and tr_A0A0A0AAN4_A0A0A0AAN4_CHAVO_50402 are exactly identical!
WARNING: Sequences sp_Q5ZIK2_PDZ11_CHICK_9031 and tr_A0A093GCR6_A0A093GCR6_DRYPU_118200 are exactly identical!
WARNING: Sequences sp_Q5ZIK2_PDZ11_CHICK_9031 and tr_A0A091IGT5_A0A091IGT5_CALAN_9244 are exactly identical!
WARNING: Sequences sp_Q5ZIK2_PDZ11_CHICK_9031 and tr_A0A1U7RUI9_A0A1U7RUI9_ALLSI_38654 are exactly identical!
WARNING: Sequences sp_Q5ZIK2_PDZ11_CHICK_9031 and tr_A0A1V4KY27_A0A1V4KY27_PATFA_372326 are exactly identical!
WARNING: Sequences sp_Q5ZIK2_PDZ11_CHICK_9031 and tr_A0A218UJ19_A0A218UJ19_9PASE_299123 are exactly identical!
WARNING: Sequences sp_Q5ZIK2_PDZ11_CHICK_9031 and tr_A0A226PI27_A0A226PI27_COLVI_9014 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_M3YZR6_M3YZR6_MUSPF_9669 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_G3RRE3_G3RRE3_GORGO_9595 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_H2NBC3_H2NBC3_PONAB_9601 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and sp_Q5RBI7_PDZD7_PONAB_9601 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_E2R754_E2R754_CANLF_9615 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_A0A2I3TDV0_A0A2I3TDV0_PANTR_9598 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_W5Q3P6_W5Q3P6_SHEEP_9940 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_D4AAZ9_D4AAZ9_RAT_10116 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_I3MCT7_I3MCT7_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_H0X7X5_H0X7X5_OTOGA_30611 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and sp_Q9H5P4_PDZD7_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_G3U523_G3U523_LOXAF_9785 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_F7DK13_F7DK13_CALJA_9483 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_F1S8U5_F1S8U5_PIG_9823 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_G1MGU1_G1MGU1_AILME_9646 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_M3WN35_M3WN35_FELCA_9685 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_A0A1S3WKG6_A0A1S3WKG6_ERIEU_9365 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_A0A1S3FAW4_A0A1S3FAW4_DIPOR_10020 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_A0A3Q0D8J4_A0A3Q0D8J4_MESAU_10036 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_A0A2R9BMD0_A0A2R9BMD0_PANPA_9597 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_A0A2U3ZI93_A0A2U3ZI93_ODORO_9708 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_A0A2U3YS68_A0A2U3YS68_LEPWE_9713 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_A0A2Y9D9V5_A0A2Y9D9V5_TRIMA_127582 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_A0A2Y9J3D2_A0A2Y9J3D2_ENHLU_391180 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_A0A2Y9MUW0_A0A2Y9MUW0_DELLE_9749 are exactly identical!
WARNING: Sequences sp_E9Q9W7_PDZD7_MOUSE_10090 and tr_A0A2Y9EG68_A0A2Y9EG68_PHYCD_9755 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_M3XYN5_M3XYN5_MUSPF_9669 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A2I3G2R5_A0A2I3G2R5_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_G1PHA5_G1PHA5_MYOLU_59463 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_G3I1F8_G3I1F8_CRIGR_10029 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_G3QUS8_G3QUS8_GORGO_9595 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A2J8UBE2_A0A2J8UBE2_PONAB_9601 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_G1TD05_G1TD05_RABIT_9986 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_J9NRG7_J9NRG7_CANLF_9615 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_H2QYR4_H2QYR4_PANTR_9598 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_F6PUP7_F6PUP7_HORSE_9796 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_W5Q220_W5Q220_SHEEP_9940 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_D3Z8K0_D3Z8K0_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_I3N6Q0_I3N6Q0_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_H0XFC0_H0XFC0_OTOGA_30611 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_H0UTF1_H0UTF1_CAVPO_10141 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and sp_Q5EBL8_PDZ11_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_G7NRU3_G7NRU3_MACMU_9544 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_G3T6V6_G3T6V6_LOXAF_9785 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_F6QWC8_F6QWC8_CALJA_9483 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and sp_Q6QA76_PDZ11_PIG_9823 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_D2H899_D2H899_AILME_9646 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_G7Q2Y7_G7Q2Y7_MACFA_9541 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and sp_Q32LE7_PDZ11_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A2I2U069_A0A2I2U069_FELCA_9685 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A2I3MGV7_A0A2I3MGV7_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A091DH97_A0A091DH97_FUKDA_885580 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A0D9RGT0_A0A0D9RGT0_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A1S3GE44_A0A1S3GE44_DIPOR_10020 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A3Q0DYV5_A0A3Q0DYV5_TARSY_1868482 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A1U7R7R0_A0A1U7R7R0_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A2K5MBT7_A0A2K5MBT7_CERAT_9531 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A2K6CMC1_A0A2K6CMC1_MACNE_9545 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A2K5ZH22_A0A2K5ZH22_MANLE_9568 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A2R9C4T3_A0A2R9C4T3_PANPA_9597 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A2U3V9K9_A0A2U3V9K9_TURTR_9739 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A2U4CGT1_A0A2U4CGT1_TURTR_9739 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A2U3ZC39_A0A2U3ZC39_ODORO_9708 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A2U3YY08_A0A2U3YY08_LEPWE_9713 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A2Y9MHR5_A0A2Y9MHR5_DELLE_9749 are exactly identical!
WARNING: Sequences sp_Q9CZG9_PDZ11_MOUSE_10090 and tr_A0A2Y9FFT6_A0A2Y9FFT6_PHYCD_9755 are exactly identical!
WARNING: Sequences sp_Q9ES64_USH1C_MOUSE_10090 and tr_Q4KMB9_Q4KMB9_RAT_10116 are exactly identical!
WARNING: Sequences tr_W5JKT4_W5JKT4_ANODA_43151 and tr_Q7Q220_Q7Q220_ANOGA_7165 are exactly identical!
WARNING: Sequences tr_W5JKT4_W5JKT4_ANODA_43151 and tr_A0A084WUI3_A0A084WUI3_ANOSI_74873 are exactly identical!
WARNING: Sequences tr_M3XRC9_M3XRC9_MUSPF_9669 and tr_G1PDA9_G1PDA9_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_M3XRC9_M3XRC9_MUSPF_9669 and tr_A0A286ZPD1_A0A286ZPD1_PIG_9823 are exactly identical!
WARNING: Sequences tr_M3XRC9_M3XRC9_MUSPF_9669 and tr_E1B914_E1B914_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_M3XRC9_M3XRC9_MUSPF_9669 and tr_A0A2Y9J833_A0A2Y9J833_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_G1QYI7_G1QYI7_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_G1QBZ2_G1QBZ2_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_A0A2J8U7Y0_A0A2J8U7Y0_PONAB_9601 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_E2RT69_E2RT69_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_K7D105_K7D105_PANTR_9598 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_I3NDK1_I3NDK1_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_H0WTW8_H0WTW8_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_H0UYM4_H0UYM4_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and sp_Q9HAP6_LIN7B_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_F6ZGS6_F6ZGS6_MACMU_9544 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_G5BAF6_G5BAF6_HETGA_10181 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_G3TBU6_G3TBU6_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_U3D1I7_U3D1I7_CALJA_9483 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_F1RIN6_F1RIN6_PIG_9823 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_G1M7C1_G1M7C1_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and sp_Q2KIB6_LIN7B_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_L5L551_L5L551_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_M3WP58_M3WP58_FELCA_9685 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_A0A0A0MXE5_A0A0A0MXE5_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_A0A0D9S348_A0A0D9S348_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_A0A1U7U8Y7_A0A1U7U8Y7_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_A0A2K5L6B1_A0A2K5L6B1_CERAT_9531 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_A0A2K6CP96_A0A2K6CP96_MACNE_9545 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_A0A2K5ZQR9_A0A2K5ZQR9_MANLE_9568 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_A0A2R9BV51_A0A2R9BV51_PANPA_9597 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_A0A2U3WZK3_A0A2U3WZK3_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_A0A2Y9DWF3_A0A2Y9DWF3_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_A0A2Y9LD54_A0A2Y9LD54_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_A0A2Y9PE17_A0A2Y9PE17_DELLE_9749 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_A0A2Y9TBX9_A0A2Y9TBX9_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_M3XVX4_M3XVX4_MUSPF_9669 and tr_A0A383Z0P1_A0A383Z0P1_BALAS_310752 are exactly identical!
WARNING: Sequences tr_M3Y9T4_M3Y9T4_MUSPF_9669 and tr_I3M2L5_I3M2L5_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_M3Y9T4_M3Y9T4_MUSPF_9669 and tr_M3VVW8_M3VVW8_FELCA_9685 are exactly identical!
WARNING: Sequences tr_M3Y9T4_M3Y9T4_MUSPF_9669 and tr_A0A1S2Z9W7_A0A1S2Z9W7_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_M3Y9T4_M3Y9T4_MUSPF_9669 and tr_A0A383YWE4_A0A383YWE4_BALAS_310752 are exactly identical!
WARNING: Sequences tr_M3YJL2_M3YJL2_MUSPF_9669 and tr_F1Q422_F1Q422_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3YJL2_M3YJL2_MUSPF_9669 and tr_G1MHI5_G1MHI5_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3YJL2_M3YJL2_MUSPF_9669 and tr_A0A2U3ZNS7_A0A2U3ZNS7_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3YJL2_M3YJL2_MUSPF_9669 and tr_A0A2U3X8X4_A0A2U3X8X4_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_M3YJL2_M3YJL2_MUSPF_9669 and tr_A0A2Y9IKR4_A0A2Y9IKR4_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YJL2_M3YJL2_MUSPF_9669 and tr_A0A384CQV5_A0A384CQV5_URSMA_29073 are exactly identical!
WARNING: Sequences tr_M3YPM6_M3YPM6_MUSPF_9669 and tr_F1S9A7_F1S9A7_PIG_9823 are exactly identical!
WARNING: Sequences tr_M3YPM6_M3YPM6_MUSPF_9669 and tr_G1L938_G1L938_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3YPM6_M3YPM6_MUSPF_9669 and tr_A0A2Y9JP93_A0A2Y9JP93_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YPM6_M3YPM6_MUSPF_9669 and tr_A0A384DK45_A0A384DK45_URSMA_29073 are exactly identical!
WARNING: Sequences tr_Q9W443_Q9W443_DROME_7227 and tr_B4I0F6_B4I0F6_DROSE_7238 are exactly identical!
WARNING: Sequences tr_A0A3B3HCX7_A0A3B3HCX7_ORYLA_8090 and tr_I3KQ30_I3KQ30_ORENI_8128 are exactly identical!
WARNING: Sequences tr_A0A3B3HFN9_A0A3B3HFN9_ORYLA_8090 and tr_A0A1S3AJR9_A0A1S3AJR9_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_G1QNS2_G1QNS2_NOMLE_61853 and tr_H0XLT4_H0XLT4_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_G1QNS2_G1QNS2_NOMLE_61853 and tr_A0A1D5QGH4_A0A1D5QGH4_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G1QNS2_G1QNS2_NOMLE_61853 and tr_F7HEC9_F7HEC9_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G1QNS2_G1QNS2_NOMLE_61853 and tr_A0A096MT55_A0A096MT55_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1QNS2_G1QNS2_NOMLE_61853 and tr_A0A0D9R959_A0A0D9R959_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1QNS2_G1QNS2_NOMLE_61853 and tr_A0A1U7TES5_A0A1U7TES5_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G1QNS2_G1QNS2_NOMLE_61853 and tr_A0A2K5M1Z1_A0A2K5M1Z1_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1QNS2_G1QNS2_NOMLE_61853 and tr_A0A2K6BDZ1_A0A2K6BDZ1_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1QNS2_G1QNS2_NOMLE_61853 and tr_A0A2K6AEJ4_A0A2K6AEJ4_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1QNS2_G1QNS2_NOMLE_61853 and tr_A0A2R9AAA9_A0A2R9AAA9_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_G1P8W8_G1P8W8_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A2I2ZQW6_A0A2I2ZQW6_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_K7EW39_K7EW39_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_G1KSK2_G1KSK2_ANOCA_28377 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_G1SXE5_G1SXE5_RABIT_9986 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and sp_F1PBJ0_RPGF2_CANLF_9615 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A2I3SQG1_A0A2I3SQG1_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_F7DCR0_F7DCR0_HORSE_9796 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A287DDU2_A0A287DDU2_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and sp_Q9Y4G8_RPGF2_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A1D5Q4X6_A0A1D5Q4X6_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_G5AQC3_G5AQC3_HETGA_10181 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A2R8MM35_A0A2R8MM35_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A287A643_A0A287A643_PIG_9823 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_G1L6X3_G1L6X3_AILME_9646 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_G8F2H7_G8F2H7_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_L5KC05_L5KC05_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A337S3J3_A0A337S3J3_FELCA_9685 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A2I3M620_A0A2I3M620_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A0D9S1V3_A0A0D9S1V3_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A1S3WKJ6_A0A1S3WKJ6_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A1S3GUK3_A0A1S3GUK3_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A1U7SP24_A0A1U7SP24_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A2K5NLR3_A0A2K5NLR3_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A2K6APC6_A0A2K6APC6_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A2K5YJ32_A0A2K5YJ32_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A2R9ABN9_A0A2R9ABN9_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A2U4ALU5_A0A2U4ALU5_TURTR_9739 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A2Y9KBI7_A0A2Y9KBI7_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A2Y9P6Y1_A0A2Y9P6Y1_DELLE_9749 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A2Y9T0T5_A0A2Y9T0T5_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A384BMI1_A0A384BMI1_URSMA_29073 are exactly identical!
WARNING: Sequences tr_G1R3R1_G1R3R1_NOMLE_61853 and tr_A0A384AA79_A0A384AA79_BALAS_310752 are exactly identical!
WARNING: Sequences tr_G1S4K1_G1S4K1_NOMLE_61853 and tr_G3QMF4_G3QMF4_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1S4K1_G1S4K1_NOMLE_61853 and tr_H2PT61_H2PT61_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1S4K1_G1S4K1_NOMLE_61853 and tr_A0A2I3RTX7_A0A2I3RTX7_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1S4K1_G1S4K1_NOMLE_61853 and sp_Q9P202_WHRN_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1S4K1_G1S4K1_NOMLE_61853 and tr_A0A096P0S4_A0A096P0S4_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1S4K1_G1S4K1_NOMLE_61853 and tr_A0A0D9RKI8_A0A0D9RKI8_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1S4K1_G1S4K1_NOMLE_61853 and tr_A0A2K5NLE4_A0A2K5NLE4_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1S4K1_G1S4K1_NOMLE_61853 and tr_A0A2K5Z0Q5_A0A2K5Z0Q5_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1S4K1_G1S4K1_NOMLE_61853 and tr_A0A2R9BTA8_A0A2R9BTA8_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I2ZWD7_A0A2I2ZWD7_GORGO_9595 and tr_K7AG48_K7AG48_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2ZWD7_A0A2I2ZWD7_GORGO_9595 and tr_A0A287AKT5_A0A287AKT5_PIG_9823 are exactly identical!
WARNING: Sequences tr_G3QT19_G3QT19_GORGO_9595 and tr_K7B8A0_K7B8A0_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3QT19_G3QT19_GORGO_9595 and sp_Q8TEU7_RPGF6_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3QT19_G3QT19_GORGO_9595 and tr_A0A2R8ZNV2_A0A2R8ZNV2_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3RXD4_G3RXD4_GORGO_9595 and tr_H2NE00_H2NE00_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G3RXD4_G3RXD4_GORGO_9595 and tr_H2R5J6_H2R5J6_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3RXD4_G3RXD4_GORGO_9595 and tr_H0WTH9_H0WTH9_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_G3RXD4_G3RXD4_GORGO_9595 and tr_L5L531_L5L531_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_G3RXD4_G3RXD4_GORGO_9595 and tr_A0A337SIC7_A0A337SIC7_FELCA_9685 are exactly identical!
WARNING: Sequences tr_G3RXD4_G3RXD4_GORGO_9595 and tr_A0A1S3GNN6_A0A1S3GNN6_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_G3RXD4_G3RXD4_GORGO_9595 and tr_A0A2R9A2A1_A0A2R9A2A1_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3RXD4_G3RXD4_GORGO_9595 and tr_A0A2Y9SBJ0_A0A2Y9SBJ0_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_G3RXD4_G3RXD4_GORGO_9595 and tr_A0A383ZIE4_A0A383ZIE4_BALAS_310752 are exactly identical!
WARNING: Sequences tr_H2PGG6_H2PGG6_PONAB_9601 and tr_F7HST7_F7HST7_MACMU_9544 are exactly identical!
WARNING: Sequences tr_H2PGG6_H2PGG6_PONAB_9601 and tr_G7P874_G7P874_MACFA_9541 are exactly identical!
WARNING: Sequences tr_H2PGG6_H2PGG6_PONAB_9601 and tr_A0A096MV05_A0A096MV05_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_H2PGG6_H2PGG6_PONAB_9601 and tr_A0A2K5NCL3_A0A2K5NCL3_CERAT_9531 are exactly identical!
WARNING: Sequences tr_H2PGG6_H2PGG6_PONAB_9601 and tr_A0A2K6D5R6_A0A2K6D5R6_MACNE_9545 are exactly identical!
WARNING: Sequences tr_H2PGG6_H2PGG6_PONAB_9601 and tr_A0A2K5XNW7_A0A2K5XNW7_MANLE_9568 are exactly identical!
WARNING: Sequences tr_B5DMW5_B5DMW5_DROPS_46245 and tr_B4NQ89_B4NQ89_DROWI_7260 are exactly identical!
WARNING: Sequences tr_B5DMW5_B5DMW5_DROPS_46245 and tr_B4H096_B4H096_DROPE_7234 are exactly identical!
WARNING: Sequences tr_B5DMW5_B5DMW5_DROPS_46245 and tr_A0A1W4VFR9_A0A1W4VFR9_DROFC_30025 are exactly identical!
WARNING: Sequences tr_F6VM95_F6VM95_MONDO_13616 and tr_G3VSM8_G3VSM8_SARHA_9305 are exactly identical!
WARNING: Sequences tr_F7DE60_F7DE60_MONDO_13616 and tr_G3WKT0_G3WKT0_SARHA_9305 are exactly identical!
WARNING: Sequences tr_F6PTQ0_F6PTQ0_HORSE_9796 and tr_W5Q4J3_W5Q4J3_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_F6VRM5_F6VRM5_HORSE_9796 and tr_A0A286XY93_A0A286XY93_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_F6VRM5_F6VRM5_HORSE_9796 and tr_A0A287AKE5_A0A287AKE5_PIG_9823 are exactly identical!
WARNING: Sequences tr_F6VRM5_F6VRM5_HORSE_9796 and tr_A0A091D2V8_A0A091D2V8_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_F6VRM5_F6VRM5_HORSE_9796 and tr_A0A1L8GJ19_A0A1L8GJ19_XENLA_8355 are exactly identical!
WARNING: Sequences tr_F6VRM5_F6VRM5_HORSE_9796 and tr_Q7ZYU3_Q7ZYU3_XENLA_8355 are exactly identical!
WARNING: Sequences tr_F6VRM5_F6VRM5_HORSE_9796 and tr_A0A3Q0DQ83_A0A3Q0DQ83_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_F6VRM5_F6VRM5_HORSE_9796 and tr_A0A384A104_A0A384A104_BALAS_310752 are exactly identical!
WARNING: Sequences tr_W5NWA7_W5NWA7_SHEEP_9940 and sp_F1MSG6_RPGF2_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_A0A3B5PTL3_A0A3B5PTL3_XIPMA_8083 and tr_A0A087XAE3_A0A087XAE3_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B5Q410_A0A3B5Q410_XIPMA_8083 and tr_A0A087YLB0_A0A087YLB0_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B5Q6R6_A0A3B5Q6R6_XIPMA_8083 and tr_A0A087YMS5_A0A087YMS5_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B5R8B0_A0A3B5R8B0_XIPMA_8083 and tr_A0A087YMC8_A0A087YMC8_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B5RDA0_A0A3B5RDA0_XIPMA_8083 and tr_A0A087XZY7_A0A087XZY7_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A088A1F6_A0A088A1F6_APIME_7460 and tr_A0A2A3EHW2_A0A2A3EHW2_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A088AFZ4_A0A088AFZ4_APIME_7460 and tr_A0A2A3ERS4_A0A2A3ERS4_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A088ANG3_A0A088ANG3_APIME_7460 and tr_A0A0M8ZQK0_A0A0M8ZQK0_9HYME_166423 are exactly identical!
WARNING: Sequences tr_A0A088ANG3_A0A088ANG3_APIME_7460 and tr_A0A2A3EBQ6_A0A2A3EBQ6_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A158NLT9_A0A158NLT9_ATTCE_12957 and tr_A0A151HZM9_A0A151HZM9_9HYME_520822 are exactly identical!
WARNING: Sequences tr_I3JNK4_I3JNK4_ORENI_8128 and tr_H3CG86_H3CG86_TETNG_99883 are exactly identical!
WARNING: Sequences tr_I3JNK4_I3JNK4_ORENI_8128 and tr_A0A2U9B0E1_A0A2U9B0E1_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_I3JQU5_I3JQU5_ORENI_8128 and tr_A0A096MFF6_A0A096MFF6_POEFO_48698 are exactly identical!
WARNING: Sequences tr_H2SPE1_H2SPE1_TAKRU_31033 and tr_H3D833_H3D833_TETNG_99883 are exactly identical!
WARNING: Sequences tr_H2TFY8_H2TFY8_TAKRU_31033 and tr_H3CEH8_H3CEH8_TETNG_99883 are exactly identical!
WARNING: Sequences tr_H2TGL8_H2TGL8_TAKRU_31033 and tr_Q4RP78_Q4RP78_TETNG_99883 are exactly identical!
WARNING: Sequences tr_A0A286Y206_A0A286Y206_CAVPO_10141 and tr_H0V3A7_H0V3A7_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_A0A286Y206_A0A286Y206_CAVPO_10141 and tr_H0V3F2_H0V3F2_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_A0A286Y206_A0A286Y206_CAVPO_10141 and tr_H0W5W7_H0W5W7_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_F6Z6H4_F6Z6H4_MACMU_9544 and tr_G7PDS5_G7PDS5_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F6Z6H4_F6Z6H4_MACMU_9544 and tr_A0A096P6A8_A0A096P6A8_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F6Z6H4_F6Z6H4_MACMU_9544 and tr_A0A0D9QZR6_A0A0D9QZR6_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F6Z6H4_F6Z6H4_MACMU_9544 and tr_A0A2K5NKF2_A0A2K5NKF2_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6Z6H4_F6Z6H4_MACMU_9544 and tr_A0A2K6CRP9_A0A2K6CRP9_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6Z6H4_F6Z6H4_MACMU_9544 and tr_A0A2K6AKC2_A0A2K6AKC2_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F7GW68_F7GW68_MACMU_9544 and tr_G7PRL1_G7PRL1_MACFA_9541 are exactly identical!
WARNING: Sequences tr_E5S4S4_E5S4S4_TRISP_6334 and tr_E5S4S6_E5S4S6_TRISP_6334 are exactly identical!
WARNING: Sequences tr_E5S4S4_E5S4S4_TRISP_6334 and tr_E5T075_E5T075_TRISP_6334 are exactly identical!
WARNING: Sequences tr_E5S4S4_E5S4S4_TRISP_6334 and tr_A0A0V0S0H4_A0A0V0S0H4_9BILA_6336 are exactly identical!
WARNING: Sequences tr_E5S4S4_E5S4S4_TRISP_6334 and tr_A0A0V1CFJ3_A0A0V1CFJ3_TRIBR_45882 are exactly identical!
WARNING: Sequences tr_E5S4S4_E5S4S4_TRISP_6334 and tr_A0A0V0WXB5_A0A0V0WXB5_9BILA_92179 are exactly identical!
WARNING: Sequences tr_E5S4S4_E5S4S4_TRISP_6334 and tr_A0A0V0VUG9_A0A0V0VUG9_9BILA_181606 are exactly identical!
WARNING: Sequences tr_E5S4S4_E5S4S4_TRISP_6334 and tr_A0A0V1KSX4_A0A0V1KSX4_9BILA_6335 are exactly identical!
WARNING: Sequences tr_E5S4S4_E5S4S4_TRISP_6334 and tr_A0A0V0ZDX9_A0A0V0ZDX9_9BILA_990121 are exactly identical!
WARNING: Sequences tr_E5S4S4_E5S4S4_TRISP_6334 and tr_A0A0V0XLL9_A0A0V0XLL9_TRIPS_6337 are exactly identical!
WARNING: Sequences tr_E5S4S4_E5S4S4_TRISP_6334 and tr_A0A0V1MIQ9_A0A0V1MIQ9_9BILA_268474 are exactly identical!
WARNING: Sequences tr_E5S4S4_E5S4S4_TRISP_6334 and tr_A0A0V1NLG8_A0A0V1NLG8_9BILA_92180 are exactly identical!
WARNING: Sequences tr_E5S4S4_E5S4S4_TRISP_6334 and tr_A0A0V1GYI9_A0A0V1GYI9_9BILA_268475 are exactly identical!
WARNING: Sequences tr_E5S4S4_E5S4S4_TRISP_6334 and tr_A0A0V0TI57_A0A0V0TI57_9BILA_144512 are exactly identical!
WARNING: Sequences tr_G3N5L3_G3N5L3_GASAC_69293 and tr_A0A0P7TZC4_A0A0P7TZC4_9TELE_113540 are exactly identical!
WARNING: Sequences tr_G3N5L3_G3N5L3_GASAC_69293 and tr_A0A060XK46_A0A060XK46_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_G3PYF5_G3PYF5_GASAC_69293 and tr_A0A3B1K0Q7_A0A3B1K0Q7_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_H0YSU1_H0YSU1_TAEGU_59729 and tr_U3JE69_U3JE69_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H0YSU1_H0YSU1_TAEGU_59729 and tr_A0A218V3N1_A0A218V3N1_9PASE_299123 are exactly identical!
WARNING: Sequences tr_H0Z5S4_H0Z5S4_TAEGU_59729 and tr_U3JK34_U3JK34_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H0Z5S4_H0Z5S4_TAEGU_59729 and tr_A0A091FVZ1_A0A091FVZ1_CORBR_85066 are exactly identical!
WARNING: Sequences tr_H0Z5S4_H0Z5S4_TAEGU_59729 and tr_A0A093PN16_A0A093PN16_9PASS_328815 are exactly identical!
WARNING: Sequences tr_H0Z5S4_H0Z5S4_TAEGU_59729 and tr_A0A218UJS0_A0A218UJS0_9PASE_299123 are exactly identical!
WARNING: Sequences tr_H0ZEN3_H0ZEN3_TAEGU_59729 and tr_U3JDE2_U3JDE2_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H0ZEN3_H0ZEN3_TAEGU_59729 and tr_U3IMG5_U3IMG5_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_H0ZEN3_H0ZEN3_TAEGU_59729 and tr_A0A093GV16_A0A093GV16_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_H0ZEN3_H0ZEN3_TAEGU_59729 and tr_A0A218UTS2_A0A218UTS2_9PASE_299123 are exactly identical!
WARNING: Sequences tr_H0ZIG2_H0ZIG2_TAEGU_59729 and tr_A0A091EB26_A0A091EB26_CORBR_85066 are exactly identical!
WARNING: Sequences tr_H0ZIG2_H0ZIG2_TAEGU_59729 and tr_A0A091VN97_A0A091VN97_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_H0ZIG2_H0ZIG2_TAEGU_59729 and tr_A0A093GWH2_A0A093GWH2_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_H0ZIG2_H0ZIG2_TAEGU_59729 and tr_A0A091HPT4_A0A091HPT4_CALAN_9244 are exactly identical!
WARNING: Sequences tr_H0ZRV1_H0ZRV1_TAEGU_59729 and tr_U3I7J3_U3I7J3_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_A0A0Q9X1S5_A0A0Q9X1S5_DROWI_7260 and tr_A0A0P9AKR2_A0A0P9AKR2_DROAN_7217 are exactly identical!
WARNING: Sequences tr_A0A0Q9X1S5_A0A0Q9X1S5_DROWI_7260 and tr_B4LDL8_B4LDL8_DROVI_7244 are exactly identical!
WARNING: Sequences tr_Q28I41_Q28I41_XENTR_8364 and tr_A0A1L8F6R1_A0A1L8F6R1_XENLA_8355 are exactly identical!
WARNING: Sequences tr_F7HQW5_F7HQW5_CALJA_9483 and tr_A0A2K6CGH5_A0A2K6CGH5_MACNE_9545 are exactly identical!
WARNING: Sequences tr_B4M848_B4M848_DROVI_7244 and tr_B4L6H2_B4L6H2_DROMO_7230 are exactly identical!
WARNING: Sequences tr_U3I068_U3I068_ANAPL_8839 and tr_A0A151PBA9_A0A151PBA9_ALLMI_8496 are exactly identical!
WARNING: Sequences tr_U3I068_U3I068_ANAPL_8839 and tr_A0A0Q3TXF3_A0A0Q3TXF3_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_U3I068_U3I068_ANAPL_8839 and tr_A0A091IZ81_A0A091IZ81_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_U3I068_U3I068_ANAPL_8839 and tr_A0A087R9W9_A0A087R9W9_APTFO_9233 are exactly identical!
WARNING: Sequences tr_U3I068_U3I068_ANAPL_8839 and tr_A0A093JVB1_A0A093JVB1_STRCA_441894 are exactly identical!
WARNING: Sequences tr_U3I068_U3I068_ANAPL_8839 and tr_A0A091WAQ5_A0A091WAQ5_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_U3I068_U3I068_ANAPL_8839 and tr_A0A099ZLJ4_A0A099ZLJ4_TINGU_94827 are exactly identical!
WARNING: Sequences tr_U3I068_U3I068_ANAPL_8839 and tr_A0A091G7G7_A0A091G7G7_9AVES_55661 are exactly identical!
WARNING: Sequences tr_U3I068_U3I068_ANAPL_8839 and tr_A0A0A0B344_A0A0A0B344_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_U3I068_U3I068_ANAPL_8839 and tr_A0A2I0LU16_A0A2I0LU16_COLLI_8932 are exactly identical!
WARNING: Sequences tr_U3I068_U3I068_ANAPL_8839 and tr_A0A093IUR9_A0A093IUR9_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_U3I068_U3I068_ANAPL_8839 and tr_A0A091HX57_A0A091HX57_CALAN_9244 are exactly identical!
WARNING: Sequences tr_U3I068_U3I068_ANAPL_8839 and tr_A0A1V4JT30_A0A1V4JT30_PATFA_372326 are exactly identical!
WARNING: Sequences tr_U3I068_U3I068_ANAPL_8839 and tr_A0A226NEW1_A0A226NEW1_CALSU_9009 are exactly identical!
WARNING: Sequences tr_U3I068_U3I068_ANAPL_8839 and tr_A0A226NT32_A0A226NT32_COLVI_9014 are exactly identical!
WARNING: Sequences tr_U3J8F7_U3J8F7_ANAPL_8839 and tr_A0A099ZZ60_A0A099ZZ60_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A044R1E4_A0A044R1E4_ONCVO_6282 and tr_A0A183HBG0_A0A183HBG0_9BILA_387005 are exactly identical!
WARNING: Sequences tr_A0A0P7TUT5_A0A0P7TUT5_9TELE_113540 and tr_A0A2I4AYN1_A0A2I4AYN1_9TELE_52670 are exactly identical!
WARNING: Sequences tr_A0A0K0FY58_A0A0K0FY58_STRVS_75913 and tr_A0A0N5B839_A0A0N5B839_STREA_174720 are exactly identical!
WARNING: Sequences tr_A0A0R3XBQ4_A0A0R3XBQ4_HYDTA_6205 and tr_A0A0R3VT92_A0A0R3VT92_TAEAS_60517 are exactly identical!
WARNING: Sequences tr_A0A151M753_A0A151M753_ALLMI_8496 and tr_A0A3Q0FW92_A0A3Q0FW92_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151MF63_A0A151MF63_ALLMI_8496 and tr_A0A1U7S4T7_A0A1U7S4T7_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151MVR7_A0A151MVR7_ALLMI_8496 and tr_A0A3Q0HED4_A0A3Q0HED4_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A0Q3P809_A0A0Q3P809_AMAAE_12930 and tr_A0A091V264_A0A091V264_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A0Q3P809_A0A0Q3P809_AMAAE_12930 and tr_A0A087RF39_A0A087RF39_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A0Q3P809_A0A0Q3P809_AMAAE_12930 and tr_A0A2I0MA51_A0A2I0MA51_COLLI_8932 are exactly identical!
WARNING: Sequences tr_A0A0Q3P809_A0A0Q3P809_AMAAE_12930 and tr_A0A1V4KUW0_A0A1V4KUW0_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A091E7F8_A0A091E7F8_CORBR_85066 and tr_A0A091W067_A0A091W067_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A091E7N9_A0A091E7N9_CORBR_85066 and tr_A0A218U8P6_A0A218U8P6_9PASE_299123 are exactly identical!
WARNING: Sequences tr_A0A0N0BKH3_A0A0N0BKH3_9HYME_166423 and tr_A0A154PES2_A0A154PES2_9HYME_178035 are exactly identical!
WARNING: Sequences tr_A0A091J6H7_A0A091J6H7_EGRGA_188379 and tr_A0A091G610_A0A091G610_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A091JNT1_A0A091JNT1_EGRGA_188379 and tr_A0A091IR52_A0A091IR52_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A0N1PGS4_A0A0N1PGS4_PAPMA_76193 and tr_A0A194PU77_A0A194PU77_PAPXU_66420 are exactly identical!
WARNING: Sequences tr_A0A194RLK8_A0A194RLK8_PAPMA_76193 and tr_A0A194PFX9_A0A194PFX9_PAPXU_66420 are exactly identical!
WARNING: Sequences tr_A0A1S3INQ8_A0A1S3INQ8_LINUN_7574 and tr_A0A1S3JAD7_A0A1S3JAD7_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3NGD7_A0A1S3NGD7_SALSA_8030 and tr_A0A060WYD1_A0A060WYD1_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3Q8Q2_A0A1S3Q8Q2_SALSA_8030 and tr_A0A060W410_A0A060W410_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3Q8Q2_A0A1S3Q8Q2_SALSA_8030 and tr_A0A060X2G0_A0A060X2G0_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3SSM7_A0A1S3SSM7_SALSA_8030 and tr_A0A060W9H7_A0A060W9H7_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3STG3_A0A1S3STG3_SALSA_8030 and tr_B5XGE8_B5XGE8_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3STG3_A0A1S3STG3_SALSA_8030 and tr_A0A060XJG2_A0A060XJG2_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1D1VUU3_A0A1D1VUU3_RAMVA_947166 and tr_A0A1D1VUV4_A0A1D1VUV4_RAMVA_947166 are exactly identical!
WARNING: Sequences tr_A0A1D1VUU3_A0A1D1VUU3_RAMVA_947166 and tr_A0A1D1VWF8_A0A1D1VWF8_RAMVA_947166 are exactly identical!
WARNING: Sequences tr_A0A1D1VUU3_A0A1D1VUU3_RAMVA_947166 and tr_A0A1D1VY41_A0A1D1VY41_RAMVA_947166 are exactly identical!
WARNING: Sequences tr_A0A1D1VUU3_A0A1D1VUU3_RAMVA_947166 and tr_A0A1D1W1M7_A0A1D1W1M7_RAMVA_947166 are exactly identical!
WARNING: Sequences tr_A0A1D1VUU3_A0A1D1VUU3_RAMVA_947166 and tr_A0A1D1W2V4_A0A1D1W2V4_RAMVA_947166 are exactly identical!
WARNING: Sequences tr_A0A2I4CSE1_A0A2I4CSE1_9TELE_52670 and tr_A0A2I4D7V1_A0A2I4D7V1_9TELE_52670 are exactly identical!
WARNING: Sequences tr_A0A226MDS6_A0A226MDS6_CALSU_9009 and tr_A0A226PHM6_A0A226PHM6_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A2D0RHM7_A0A2D0RHM7_ICTPU_7998 and tr_A0A2D0RHN1_A0A2D0RHN1_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RHM7_A0A2D0RHM7_ICTPU_7998 and tr_A0A2D0RHN6_A0A2D0RHN6_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RHM7_A0A2D0RHM7_ICTPU_7998 and tr_A0A2D0RHN9_A0A2D0RHN9_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RHM7_A0A2D0RHM7_ICTPU_7998 and tr_A0A2D0RHP3_A0A2D0RHP3_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RHM7_A0A2D0RHM7_ICTPU_7998 and tr_A0A2D0RIR4_A0A2D0RIR4_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RHM7_A0A2D0RHM7_ICTPU_7998 and tr_A0A2D0RJD8_A0A2D0RJD8_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RHM7_A0A2D0RHM7_ICTPU_7998 and tr_A0A2D0RJE3_A0A2D0RJE3_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RY94_A0A2D0RY94_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RY95_A0A2D0RY95_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RY98_A0A2D0RY98_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RY99_A0A2D0RY99_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RYA3_A0A2D0RYA3_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RYA4_A0A2D0RYA4_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RYA5_A0A2D0RYA5_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RYA8_A0A2D0RYA8_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RZ58_A0A2D0RZ58_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RZ63_A0A2D0RZ63_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RZT7_A0A2D0RZT7_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RZU2_A0A2D0RZU2_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0S8Q1_A0A2D0S8Q1_ICTPU_7998 and tr_A0A2D0S8Q4_A0A2D0S8Q4_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0S8Q1_A0A2D0S8Q1_ICTPU_7998 and tr_A0A2D0S8R0_A0A2D0S8R0_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0S8Q1_A0A2D0S8Q1_ICTPU_7998 and tr_A0A2D0S9J5_A0A2D0S9J5_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0SYS3_A0A2D0SYS3_ICTPU_7998 and tr_A0A2D0SYS5_A0A2D0SYS5_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0SYS3_A0A2D0SYS3_ICTPU_7998 and tr_A0A2D0SZ67_A0A2D0SZ67_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0T0Y5_A0A2D0T0Y5_ICTPU_7998 and tr_A0A2D0T1B6_A0A2D0T1B6_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0T8H8_A0A2D0T8H8_ICTPU_7998 and tr_W6A3K2_W6A3K2_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2G8JBS7_A0A2G8JBS7_STIJA_307972 and tr_A0A2G8KLC7_A0A2G8KLC7_STIJA_307972 are exactly identical!
WARNING: Sequences tr_A0A2G8JHU9_A0A2G8JHU9_STIJA_307972 and tr_A0A2G8K1F2_A0A2G8K1F2_STIJA_307972 are exactly identical!
WARNING: Sequences tr_A0A2U4AG23_A0A2U4AG23_TURTR_9739 and tr_A0A2Y9E2B6_A0A2Y9E2B6_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_A0A2U4AG23_A0A2U4AG23_TURTR_9739 and tr_A0A2Y9PMB0_A0A2Y9PMB0_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4AG23_A0A2U4AG23_TURTR_9739 and tr_A0A2Y9ES53_A0A2Y9ES53_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2U4AG23_A0A2U4AG23_TURTR_9739 and tr_A0A384AMK6_A0A384AMK6_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A0A2U3Z9K2_A0A2U3Z9K2_ODORO_9708 and tr_A0A2U3Y8F6_A0A2U3Y8F6_LEPWE_9713 are exactly identical!
WARNING: Duplicate sequences found: 426

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/3_mltree/Q9H5P4.raxml.reduced.phy

Alignment comprises 1 partitions and 62 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 62 / 62
Gaps: 2.65 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/3_mltree/Q9H5P4.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 978 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 62 / 4960
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -102691.499219] Initial branch length optimization
[00:00:01 -85569.037788] Model parameter optimization (eps = 10.000000)
[00:00:21 -85234.655884] AUTODETECT spr round 1 (radius: 5)
[00:01:43 -49365.280188] AUTODETECT spr round 2 (radius: 10)
[00:03:11 -32560.077670] AUTODETECT spr round 3 (radius: 15)
[00:04:42 -27194.754800] AUTODETECT spr round 4 (radius: 20)
[00:06:22 -24717.694560] AUTODETECT spr round 5 (radius: 25)
[00:08:32 -22745.904768] SPR radius for FAST iterations: 25 (autodetect)
[00:08:32 -22745.904768] Model parameter optimization (eps = 3.000000)
[00:08:52 -22702.864884] FAST spr round 1 (radius: 25)
[00:10:18 -17745.721691] FAST spr round 2 (radius: 25)
[00:11:33 -17041.607206] FAST spr round 3 (radius: 25)
[00:12:45 -16963.189942] FAST spr round 4 (radius: 25)
[00:13:55 -16957.961591] FAST spr round 5 (radius: 25)
[00:15:02 -16944.799257] FAST spr round 6 (radius: 25)
[00:16:09 -16944.798748] Model parameter optimization (eps = 1.000000)
[00:16:19 -16943.298833] SLOW spr round 1 (radius: 5)
[00:17:34 -16937.718055] SLOW spr round 2 (radius: 5)
[00:18:48 -16937.433085] SLOW spr round 3 (radius: 5)
[00:20:00 -16937.432821] SLOW spr round 4 (radius: 10)
[00:21:16 -16935.897330] SLOW spr round 5 (radius: 5)
[00:22:45 -16916.295776] SLOW spr round 6 (radius: 5)
[00:24:06 -16914.284948] SLOW spr round 7 (radius: 5)
[00:25:19 -16914.284920] SLOW spr round 8 (radius: 10)
[00:26:35 -16914.284919] SLOW spr round 9 (radius: 15)
[00:28:09 -16912.445942] SLOW spr round 10 (radius: 5)
[00:29:38 -16912.445841] SLOW spr round 11 (radius: 10)
[00:31:01 -16910.639114] SLOW spr round 12 (radius: 5)
[00:32:25 -16910.638398] SLOW spr round 13 (radius: 10)
[00:33:43 -16910.638372] SLOW spr round 14 (radius: 15)
[00:35:17 -16909.710924] SLOW spr round 15 (radius: 5)
[00:36:45 -16909.710913] SLOW spr round 16 (radius: 10)
[00:38:07 -16909.710903] SLOW spr round 17 (radius: 15)
[00:39:39 -16909.710894] SLOW spr round 18 (radius: 20)
[00:41:39 -16907.627408] SLOW spr round 19 (radius: 5)
[00:43:10 -16907.127247] SLOW spr round 20 (radius: 5)
[00:44:31 -16906.194799] SLOW spr round 21 (radius: 5)
[00:45:50 -16893.460380] SLOW spr round 22 (radius: 5)
[00:47:03 -16893.432589] SLOW spr round 23 (radius: 10)
[00:48:19 -16893.432587] SLOW spr round 24 (radius: 15)
[00:49:53 -16893.432586] SLOW spr round 25 (radius: 20)
[00:51:52 -16893.432585] SLOW spr round 26 (radius: 25)
[00:54:21 -16882.628874] SLOW spr round 27 (radius: 5)
[00:55:55 -16728.748562] SLOW spr round 28 (radius: 5)
[00:57:17 -16728.748256] SLOW spr round 29 (radius: 10)
[00:58:34 -16728.748234] SLOW spr round 30 (radius: 15)
[01:00:08 -16728.748232] SLOW spr round 31 (radius: 20)
[01:02:08 -16728.748231] SLOW spr round 32 (radius: 25)
[01:04:39 -16728.748230] Model parameter optimization (eps = 0.100000)

[01:04:46] ML tree search #1, logLikelihood: -16728.646758

[01:04:46 -102776.582365] Initial branch length optimization
[01:04:47 -85864.962046] Model parameter optimization (eps = 10.000000)
[01:05:09 -85578.067969] AUTODETECT spr round 1 (radius: 5)
[01:06:34 -51228.475083] AUTODETECT spr round 2 (radius: 10)
[01:08:03 -34468.300121] AUTODETECT spr round 3 (radius: 15)
[01:09:37 -27836.257171] AUTODETECT spr round 4 (radius: 20)
[01:11:19 -23726.818979] AUTODETECT spr round 5 (radius: 25)
[01:13:21 -20961.476283] SPR radius for FAST iterations: 25 (autodetect)
[01:13:21 -20961.476283] Model parameter optimization (eps = 3.000000)
[01:13:40 -20917.246689] FAST spr round 1 (radius: 25)
[01:15:05 -17231.241995] FAST spr round 2 (radius: 25)
[01:16:22 -16857.936244] FAST spr round 3 (radius: 25)
[01:17:34 -16830.901966] FAST spr round 4 (radius: 25)
[01:18:43 -16830.136884] FAST spr round 5 (radius: 25)
[01:19:50 -16829.727203] FAST spr round 6 (radius: 25)
[01:20:56 -16829.726375] Model parameter optimization (eps = 1.000000)
[01:21:07 -16824.193064] SLOW spr round 1 (radius: 5)
[01:22:23 -16820.796407] SLOW spr round 2 (radius: 5)
[01:23:38 -16820.537730] SLOW spr round 3 (radius: 5)
[01:24:52 -16820.537716] SLOW spr round 4 (radius: 10)
[01:26:08 -16820.057205] SLOW spr round 5 (radius: 5)
[01:27:36 -16819.257443] SLOW spr round 6 (radius: 5)
[01:28:55 -16819.256231] SLOW spr round 7 (radius: 10)
[01:30:12 -16818.512057] SLOW spr round 8 (radius: 5)
[01:31:38 -16818.408776] SLOW spr round 9 (radius: 5)
[01:32:57 -16818.408694] SLOW spr round 10 (radius: 10)
[01:34:14 -16818.408690] SLOW spr round 11 (radius: 15)
[01:35:50 -16815.843192] SLOW spr round 12 (radius: 5)
[01:37:20 -16815.842411] SLOW spr round 13 (radius: 10)
[01:38:43 -16815.842353] SLOW spr round 14 (radius: 15)
[01:40:17 -16815.842341] SLOW spr round 15 (radius: 20)
[01:42:19 -16815.307329] SLOW spr round 16 (radius: 5)
[01:43:50 -16815.307327] SLOW spr round 17 (radius: 10)
[01:45:14 -16815.307326] SLOW spr round 18 (radius: 15)
[01:46:48 -16812.176178] SLOW spr round 19 (radius: 5)
[01:48:18 -16812.176136] SLOW spr round 20 (radius: 10)
[01:49:41 -16812.176136] SLOW spr round 21 (radius: 15)
[01:51:15 -16812.176135] SLOW spr round 22 (radius: 20)
[01:53:17 -16812.176135] SLOW spr round 23 (radius: 25)
[01:55:53 -16812.176135] Model parameter optimization (eps = 0.100000)

[01:56:00] ML tree search #2, logLikelihood: -16812.093667

[01:56:00 -103184.316458] Initial branch length optimization
[01:56:02 -85658.336898] Model parameter optimization (eps = 10.000000)
[01:56:23 -85336.212366] AUTODETECT spr round 1 (radius: 5)
[01:57:47 -49515.822808] AUTODETECT spr round 2 (radius: 10)
[01:59:15 -33684.302169] AUTODETECT spr round 3 (radius: 15)
[02:00:46 -27374.898712] AUTODETECT spr round 4 (radius: 20)
[02:02:27 -24442.641143] AUTODETECT spr round 5 (radius: 25)
[02:04:12 -23085.154611] SPR radius for FAST iterations: 25 (autodetect)
[02:04:12 -23085.154611] Model parameter optimization (eps = 3.000000)
[02:04:33 -23006.505548] FAST spr round 1 (radius: 25)
[02:05:59 -18159.451892] FAST spr round 2 (radius: 25)
[02:07:14 -16953.258079] FAST spr round 3 (radius: 25)
[02:08:27 -16808.417951] FAST spr round 4 (radius: 25)
[02:09:39 -16750.652459] FAST spr round 5 (radius: 25)
[02:10:47 -16749.610693] FAST spr round 6 (radius: 25)
[02:11:54 -16749.609725] Model parameter optimization (eps = 1.000000)
[02:12:06 -16744.496881] SLOW spr round 1 (radius: 5)
[02:13:22 -16735.977184] SLOW spr round 2 (radius: 5)
[02:14:38 -16735.834603] SLOW spr round 3 (radius: 5)
[02:15:52 -16735.833830] SLOW spr round 4 (radius: 10)
[02:17:10 -16732.416099] SLOW spr round 5 (radius: 5)
[02:18:36 -16732.415506] SLOW spr round 6 (radius: 10)
[02:19:58 -16730.535570] SLOW spr round 7 (radius: 5)
[02:21:24 -16730.535561] SLOW spr round 8 (radius: 10)
[02:22:44 -16730.535560] SLOW spr round 9 (radius: 15)
[02:24:22 -16727.153315] SLOW spr round 10 (radius: 5)
[02:25:53 -16727.153243] SLOW spr round 11 (radius: 10)
[02:27:16 -16727.153239] SLOW spr round 12 (radius: 15)
[02:28:52 -16727.153225] SLOW spr round 13 (radius: 20)
[02:30:59 -16725.474176] SLOW spr round 14 (radius: 5)
[02:32:31 -16725.474173] SLOW spr round 15 (radius: 10)
[02:33:56 -16725.474173] SLOW spr round 16 (radius: 15)
[02:35:31 -16725.474173] SLOW spr round 17 (radius: 20)
[02:37:38 -16725.474173] SLOW spr round 18 (radius: 25)
[02:40:09 -16725.474173] Model parameter optimization (eps = 0.100000)

[02:40:14] ML tree search #3, logLikelihood: -16725.161860

[02:40:15 -103831.503356] Initial branch length optimization
[02:40:16 -86346.922084] Model parameter optimization (eps = 10.000000)
[02:40:48 -86053.174375] AUTODETECT spr round 1 (radius: 5)
[02:42:12 -49911.939894] AUTODETECT spr round 2 (radius: 10)
[02:43:41 -32879.858650] AUTODETECT spr round 3 (radius: 15)
[02:45:12 -27310.670919] AUTODETECT spr round 4 (radius: 20)
[02:46:51 -23615.314501] AUTODETECT spr round 5 (radius: 25)
[02:48:38 -22911.923638] SPR radius for FAST iterations: 25 (autodetect)
[02:48:38 -22911.923638] Model parameter optimization (eps = 3.000000)
[02:48:56 -22839.060424] FAST spr round 1 (radius: 25)
[02:50:27 -18146.087872] FAST spr round 2 (radius: 25)
[02:51:49 -17107.446818] FAST spr round 3 (radius: 25)
[02:53:02 -16858.670884] FAST spr round 4 (radius: 25)
[02:54:13 -16803.571269] FAST spr round 5 (radius: 25)
[02:55:21 -16803.571057] Model parameter optimization (eps = 1.000000)
[02:55:29 -16801.647036] SLOW spr round 1 (radius: 5)
[02:56:46 -16797.172933] SLOW spr round 2 (radius: 5)
[02:58:02 -16796.746281] SLOW spr round 3 (radius: 5)
[02:59:16 -16796.745208] SLOW spr round 4 (radius: 10)
[03:00:34 -16795.141372] SLOW spr round 5 (radius: 5)
[03:02:03 -16793.729807] SLOW spr round 6 (radius: 5)
[03:03:22 -16793.729180] SLOW spr round 7 (radius: 10)
[03:04:41 -16792.568317] SLOW spr round 8 (radius: 5)
[03:06:08 -16792.566836] SLOW spr round 9 (radius: 10)
[03:07:29 -16779.973003] SLOW spr round 10 (radius: 5)
[03:08:56 -16744.835671] SLOW spr round 11 (radius: 5)
[03:10:16 -16737.977281] SLOW spr round 12 (radius: 5)
[03:11:31 -16737.977275] SLOW spr round 13 (radius: 10)
[03:12:49 -16737.977274] SLOW spr round 14 (radius: 15)
[03:14:23 -16734.073736] SLOW spr round 15 (radius: 5)
[03:15:54 -16732.650340] SLOW spr round 16 (radius: 5)
[03:17:16 -16732.650081] SLOW spr round 17 (radius: 10)
[03:18:35 -16732.518443] SLOW spr round 18 (radius: 5)
[03:20:01 -16732.518402] SLOW spr round 19 (radius: 10)
[03:21:21 -16732.518389] SLOW spr round 20 (radius: 15)
[03:22:54 -16732.518389] SLOW spr round 21 (radius: 20)
[03:24:53 -16732.518389] SLOW spr round 22 (radius: 25)
[03:27:27 -16732.061478] SLOW spr round 23 (radius: 5)
[03:29:00 -16732.055970] SLOW spr round 24 (radius: 10)
[03:30:25 -16732.055048] SLOW spr round 25 (radius: 15)
[03:31:59 -16732.054898] SLOW spr round 26 (radius: 20)
[03:34:00 -16732.054874] SLOW spr round 27 (radius: 25)
[03:36:36 -16732.054870] Model parameter optimization (eps = 0.100000)

[03:36:42] ML tree search #4, logLikelihood: -16731.884832

[03:36:42 -102451.812148] Initial branch length optimization
[03:36:43 -85228.517527] Model parameter optimization (eps = 10.000000)
[03:37:06 -84965.726917] AUTODETECT spr round 1 (radius: 5)
[03:38:28 -48820.559824] AUTODETECT spr round 2 (radius: 10)
[03:39:56 -34024.426049] AUTODETECT spr round 3 (radius: 15)
[03:41:29 -26708.855895] AUTODETECT spr round 4 (radius: 20)
[03:43:07 -23297.393163] AUTODETECT spr round 5 (radius: 25)
[03:44:58 -20740.678557] SPR radius for FAST iterations: 25 (autodetect)
[03:44:58 -20740.678557] Model parameter optimization (eps = 3.000000)
[03:45:18 -20715.889065] FAST spr round 1 (radius: 25)
[03:46:41 -17288.422082] FAST spr round 2 (radius: 25)
[03:47:55 -16865.441686] FAST spr round 3 (radius: 25)
[03:49:06 -16790.420701] FAST spr round 4 (radius: 25)
[03:50:16 -16780.892509] FAST spr round 5 (radius: 25)
[03:51:23 -16778.960058] FAST spr round 6 (radius: 25)
[03:52:29 -16778.644391] FAST spr round 7 (radius: 25)
[03:53:35 -16778.644187] Model parameter optimization (eps = 1.000000)
[03:53:49 -16772.541225] SLOW spr round 1 (radius: 5)
[03:55:03 -16767.983295] SLOW spr round 2 (radius: 5)
[03:56:18 -16765.879175] SLOW spr round 3 (radius: 5)
[03:57:34 -16765.621480] SLOW spr round 4 (radius: 5)
[03:58:47 -16765.621467] SLOW spr round 5 (radius: 10)
[04:00:04 -16761.371857] SLOW spr round 6 (radius: 5)
[04:01:31 -16759.872928] SLOW spr round 7 (radius: 5)
[04:02:50 -16759.872566] SLOW spr round 8 (radius: 10)
[04:04:07 -16759.872506] SLOW spr round 9 (radius: 15)
[04:05:45 -16747.987612] SLOW spr round 10 (radius: 5)
[04:07:16 -16747.085017] SLOW spr round 11 (radius: 5)
[04:08:39 -16747.084482] SLOW spr round 12 (radius: 10)
[04:09:58 -16746.539676] SLOW spr round 13 (radius: 5)
[04:11:24 -16746.539592] SLOW spr round 14 (radius: 10)
[04:12:44 -16746.539583] SLOW spr round 15 (radius: 15)
[04:14:20 -16746.539582] SLOW spr round 16 (radius: 20)
[04:16:25 -16746.314256] SLOW spr round 17 (radius: 5)
[04:17:56 -16746.313503] SLOW spr round 18 (radius: 10)
[04:19:23 -16746.313368] SLOW spr round 19 (radius: 15)
[04:20:58 -16746.313343] SLOW spr round 20 (radius: 20)
[04:23:05 -16746.313338] SLOW spr round 21 (radius: 25)
[04:25:44 -16746.313337] Model parameter optimization (eps = 0.100000)

[04:25:47] ML tree search #5, logLikelihood: -16746.289559

[04:25:47 -102804.678244] Initial branch length optimization
[04:25:49 -85444.403371] Model parameter optimization (eps = 10.000000)
[04:26:12 -85178.814483] AUTODETECT spr round 1 (radius: 5)
[04:27:36 -47819.828923] AUTODETECT spr round 2 (radius: 10)
[04:29:02 -32617.492096] AUTODETECT spr round 3 (radius: 15)
[04:30:34 -25767.567548] AUTODETECT spr round 4 (radius: 20)
[04:32:22 -22070.769965] AUTODETECT spr round 5 (radius: 25)
[04:34:12 -20564.633116] SPR radius for FAST iterations: 25 (autodetect)
[04:34:12 -20564.633116] Model parameter optimization (eps = 3.000000)
[04:34:27 -20518.441245] FAST spr round 1 (radius: 25)
[04:35:53 -17625.724026] FAST spr round 2 (radius: 25)
[04:37:09 -17170.517409] FAST spr round 3 (radius: 25)
[04:38:22 -16916.792820] FAST spr round 4 (radius: 25)
[04:39:35 -16884.900525] FAST spr round 5 (radius: 25)
[04:40:45 -16883.024374] FAST spr round 6 (radius: 25)
[04:41:53 -16883.024229] Model parameter optimization (eps = 1.000000)
[04:42:01 -16881.717677] SLOW spr round 1 (radius: 5)
[04:43:20 -16877.835470] SLOW spr round 2 (radius: 5)
[04:44:38 -16875.308415] SLOW spr round 3 (radius: 5)
[04:45:54 -16875.259624] SLOW spr round 4 (radius: 10)
[04:47:14 -16872.393572] SLOW spr round 5 (radius: 5)
[04:48:42 -16868.734229] SLOW spr round 6 (radius: 5)
[04:50:02 -16868.284162] SLOW spr round 7 (radius: 5)
[04:51:18 -16868.284162] SLOW spr round 8 (radius: 10)
[04:52:36 -16868.284162] SLOW spr round 9 (radius: 15)
[04:54:10 -16865.623802] SLOW spr round 10 (radius: 5)
[04:55:41 -16864.828287] SLOW spr round 11 (radius: 5)
[04:57:03 -16864.828197] SLOW spr round 12 (radius: 10)
[04:58:23 -16858.767321] SLOW spr round 13 (radius: 5)
[04:59:52 -16854.955725] SLOW spr round 14 (radius: 5)
[05:01:11 -16854.660060] SLOW spr round 15 (radius: 5)
[05:02:28 -16854.659947] SLOW spr round 16 (radius: 10)
[05:03:46 -16854.659925] SLOW spr round 17 (radius: 15)
[05:05:19 -16854.659919] SLOW spr round 18 (radius: 20)
[05:07:07 -16854.659917] SLOW spr round 19 (radius: 25)
[05:09:18 -16846.345294] SLOW spr round 20 (radius: 5)
[05:10:56 -16752.910013] SLOW spr round 21 (radius: 5)
[05:12:23 -16745.374652] SLOW spr round 22 (radius: 5)
[05:13:44 -16739.194224] SLOW spr round 23 (radius: 5)
[05:15:00 -16734.895169] SLOW spr round 24 (radius: 5)
[05:16:15 -16734.895143] SLOW spr round 25 (radius: 10)
[05:17:34 -16734.895143] SLOW spr round 26 (radius: 15)
[05:19:10 -16734.895143] SLOW spr round 27 (radius: 20)
[05:21:13 -16734.429602] SLOW spr round 28 (radius: 5)
[05:22:48 -16732.343538] SLOW spr round 29 (radius: 5)
[05:24:13 -16732.341848] SLOW spr round 30 (radius: 10)
[05:25:32 -16731.535289] SLOW spr round 31 (radius: 5)
[05:26:59 -16731.535010] SLOW spr round 32 (radius: 10)
[05:28:20 -16731.535008] SLOW spr round 33 (radius: 15)
[05:29:56 -16731.535008] SLOW spr round 34 (radius: 20)
[05:32:00 -16731.535008] SLOW spr round 35 (radius: 25)
[05:34:34 -16731.535008] Model parameter optimization (eps = 0.100000)

[05:34:41] ML tree search #6, logLikelihood: -16731.239511

[05:34:41 -104158.615581] Initial branch length optimization
[05:34:43 -86212.725837] Model parameter optimization (eps = 10.000000)
[05:35:02 -85953.058430] AUTODETECT spr round 1 (radius: 5)
[05:36:25 -48512.937181] AUTODETECT spr round 2 (radius: 10)
[05:37:51 -34680.790028] AUTODETECT spr round 3 (radius: 15)
[05:39:20 -26715.846168] AUTODETECT spr round 4 (radius: 20)
[05:41:02 -23072.515397] AUTODETECT spr round 5 (radius: 25)
[05:42:54 -22317.925997] SPR radius for FAST iterations: 25 (autodetect)
[05:42:54 -22317.925997] Model parameter optimization (eps = 3.000000)
[05:43:12 -22254.182525] FAST spr round 1 (radius: 25)
[05:44:41 -18390.582634] FAST spr round 2 (radius: 25)
[05:46:03 -17576.334735] FAST spr round 3 (radius: 25)
[05:47:17 -17006.994632] FAST spr round 4 (radius: 25)
[05:48:31 -16935.516552] FAST spr round 5 (radius: 25)
[05:49:40 -16920.476778] FAST spr round 6 (radius: 25)
[05:50:46 -16920.476470] Model parameter optimization (eps = 1.000000)
[05:51:02 -16915.831113] SLOW spr round 1 (radius: 5)
[05:52:17 -16912.073474] SLOW spr round 2 (radius: 5)
[05:53:33 -16911.988753] SLOW spr round 3 (radius: 10)
[05:54:55 -16819.404705] SLOW spr round 4 (radius: 5)
[05:56:25 -16766.102895] SLOW spr round 5 (radius: 5)
[05:57:44 -16765.616894] SLOW spr round 6 (radius: 5)
[05:58:59 -16765.616028] SLOW spr round 7 (radius: 10)
[06:00:16 -16765.615924] SLOW spr round 8 (radius: 15)
[06:01:56 -16750.264637] SLOW spr round 9 (radius: 5)
[06:03:27 -16749.830797] SLOW spr round 10 (radius: 5)
[06:04:49 -16749.830340] SLOW spr round 11 (radius: 10)
[06:06:07 -16749.830315] SLOW spr round 12 (radius: 15)
[06:07:44 -16749.306434] SLOW spr round 13 (radius: 5)
[06:09:15 -16749.304798] SLOW spr round 14 (radius: 10)
[06:10:40 -16748.371485] SLOW spr round 15 (radius: 5)
[06:12:04 -16748.371440] SLOW spr round 16 (radius: 10)
[06:13:24 -16748.371430] SLOW spr round 17 (radius: 15)
[06:15:01 -16748.371422] SLOW spr round 18 (radius: 20)
[06:17:12 -16747.066601] SLOW spr round 19 (radius: 5)
[06:18:48 -16732.847358] SLOW spr round 20 (radius: 5)
[06:20:11 -16732.118866] SLOW spr round 21 (radius: 5)
[06:21:27 -16732.118237] SLOW spr round 22 (radius: 10)
[06:22:44 -16732.118218] SLOW spr round 23 (radius: 15)
[06:24:23 -16732.118213] SLOW spr round 24 (radius: 20)
[06:26:38 -16732.118211] SLOW spr round 25 (radius: 25)
[06:29:31 -16731.574472] SLOW spr round 26 (radius: 5)
[06:31:04 -16730.802534] SLOW spr round 27 (radius: 5)
[06:32:29 -16730.345276] SLOW spr round 28 (radius: 5)
[06:33:47 -16730.345130] SLOW spr round 29 (radius: 10)
[06:35:04 -16730.157624] SLOW spr round 30 (radius: 5)
[06:36:30 -16730.157517] SLOW spr round 31 (radius: 10)
[06:37:52 -16729.431699] SLOW spr round 32 (radius: 5)
[06:39:18 -16729.143044] SLOW spr round 33 (radius: 5)
[06:40:36 -16729.142077] SLOW spr round 34 (radius: 10)
[06:41:54 -16729.141215] SLOW spr round 35 (radius: 15)
[06:43:34 -16729.140441] SLOW spr round 36 (radius: 20)
[06:45:47 -16729.139743] SLOW spr round 37 (radius: 25)
[06:48:40 -16729.139110] Model parameter optimization (eps = 0.100000)

[06:48:45] ML tree search #7, logLikelihood: -16729.053409

[06:48:45 -103607.480919] Initial branch length optimization
[06:48:47 -86050.241096] Model parameter optimization (eps = 10.000000)
[06:49:03 -85827.306511] AUTODETECT spr round 1 (radius: 5)
[06:50:25 -47372.824573] AUTODETECT spr round 2 (radius: 10)
[06:51:52 -30787.858594] AUTODETECT spr round 3 (radius: 15)
[06:53:24 -24586.107673] AUTODETECT spr round 4 (radius: 20)
[06:55:02 -22580.422654] AUTODETECT spr round 5 (radius: 25)
[06:56:59 -21061.965883] SPR radius for FAST iterations: 25 (autodetect)
[06:56:59 -21061.965883] Model parameter optimization (eps = 3.000000)
[06:57:16 -21022.844399] FAST spr round 1 (radius: 25)
[06:58:43 -17242.943905] FAST spr round 2 (radius: 25)
[06:59:58 -16934.550149] FAST spr round 3 (radius: 25)
[07:01:10 -16829.143002] FAST spr round 4 (radius: 25)
[07:02:20 -16773.928794] FAST spr round 5 (radius: 25)
[07:03:31 -16759.569060] FAST spr round 6 (radius: 25)
[07:04:39 -16757.129380] FAST spr round 7 (radius: 25)
[07:05:46 -16756.248953] FAST spr round 8 (radius: 25)
[07:06:52 -16756.248794] Model parameter optimization (eps = 1.000000)
[07:07:06 -16747.163883] SLOW spr round 1 (radius: 5)
[07:08:21 -16744.439364] SLOW spr round 2 (radius: 5)
[07:09:35 -16744.438837] SLOW spr round 3 (radius: 10)
[07:10:53 -16740.106842] SLOW spr round 4 (radius: 5)
[07:12:22 -16738.277603] SLOW spr round 5 (radius: 5)
[07:13:41 -16738.277018] SLOW spr round 6 (radius: 10)
[07:14:59 -16736.738530] SLOW spr round 7 (radius: 5)
[07:16:26 -16733.163563] SLOW spr round 8 (radius: 5)
[07:17:45 -16732.713679] SLOW spr round 9 (radius: 5)
[07:19:00 -16732.713564] SLOW spr round 10 (radius: 10)
[07:20:17 -16732.713449] SLOW spr round 11 (radius: 15)
[07:21:57 -16731.535808] SLOW spr round 12 (radius: 5)
[07:23:27 -16731.535691] SLOW spr round 13 (radius: 10)
[07:24:51 -16728.934908] SLOW spr round 14 (radius: 5)
[07:26:16 -16728.934434] SLOW spr round 15 (radius: 10)
[07:27:37 -16728.934313] SLOW spr round 16 (radius: 15)
[07:29:14 -16728.934225] SLOW spr round 17 (radius: 20)
[07:31:26 -16728.934219] SLOW spr round 18 (radius: 25)
[07:34:18 -16728.855568] Model parameter optimization (eps = 0.100000)

[07:34:21] ML tree search #8, logLikelihood: -16728.790859

[07:34:21 -103266.035227] Initial branch length optimization
[07:34:23 -85637.088086] Model parameter optimization (eps = 10.000000)
[07:34:40 -85384.408246] AUTODETECT spr round 1 (radius: 5)
[07:36:03 -49207.129338] AUTODETECT spr round 2 (radius: 10)
[07:37:28 -32726.603175] AUTODETECT spr round 3 (radius: 15)
[07:39:01 -25478.199491] AUTODETECT spr round 4 (radius: 20)
[07:40:39 -21356.140528] AUTODETECT spr round 5 (radius: 25)
[07:42:32 -20295.509835] SPR radius for FAST iterations: 25 (autodetect)
[07:42:32 -20295.509835] Model parameter optimization (eps = 3.000000)
[07:42:47 -20259.374125] FAST spr round 1 (radius: 25)
[07:44:15 -17703.706104] FAST spr round 2 (radius: 25)
[07:45:33 -17316.480265] FAST spr round 3 (radius: 25)
[07:46:45 -17293.580964] FAST spr round 4 (radius: 25)
[07:47:56 -17278.992800] FAST spr round 5 (radius: 25)
[07:49:04 -17276.052517] FAST spr round 6 (radius: 25)
[07:50:12 -17275.452930] FAST spr round 7 (radius: 25)
[07:51:19 -17275.451873] Model parameter optimization (eps = 1.000000)
[07:51:32 -17269.580947] SLOW spr round 1 (radius: 5)
[07:52:49 -17256.552205] SLOW spr round 2 (radius: 5)
[07:54:03 -17256.317183] SLOW spr round 3 (radius: 5)
[07:55:17 -17256.315486] SLOW spr round 4 (radius: 10)
[07:56:35 -17255.427618] SLOW spr round 5 (radius: 5)
[07:58:03 -17251.764370] SLOW spr round 6 (radius: 5)
[07:59:25 -17248.438755] SLOW spr round 7 (radius: 5)
[08:00:40 -17248.325039] SLOW spr round 8 (radius: 5)
[08:01:53 -17248.323573] SLOW spr round 9 (radius: 10)
[08:03:11 -17248.323509] SLOW spr round 10 (radius: 15)
[08:04:48 -17248.239068] SLOW spr round 11 (radius: 20)
[08:06:51 -17247.449469] SLOW spr round 12 (radius: 5)
[08:08:25 -17246.762432] SLOW spr round 13 (radius: 5)
[08:09:48 -17246.762145] SLOW spr round 14 (radius: 10)
[08:11:08 -17242.896835] SLOW spr round 15 (radius: 5)
[08:12:33 -17242.896826] SLOW spr round 16 (radius: 10)
[08:13:54 -17242.896824] SLOW spr round 17 (radius: 15)
[08:15:28 -17241.975458] SLOW spr round 18 (radius: 5)
[08:16:59 -17241.975192] SLOW spr round 19 (radius: 10)
[08:18:23 -17241.975133] SLOW spr round 20 (radius: 15)
[08:19:57 -17241.975119] SLOW spr round 21 (radius: 20)
[08:21:59 -17241.975116] SLOW spr round 22 (radius: 25)
[08:24:30 -17225.785785] SLOW spr round 23 (radius: 5)
[08:26:04 -16994.089041] SLOW spr round 24 (radius: 5)
[08:27:30 -16835.232803] SLOW spr round 25 (radius: 5)
[08:28:51 -16750.982235] SLOW spr round 26 (radius: 5)
[08:30:06 -16743.280448] SLOW spr round 27 (radius: 5)
[08:31:20 -16743.279300] SLOW spr round 28 (radius: 10)
[08:32:38 -16742.092120] SLOW spr round 29 (radius: 5)
[08:34:04 -16738.524025] SLOW spr round 30 (radius: 5)
[08:35:23 -16738.523983] SLOW spr round 31 (radius: 10)
[08:36:41 -16738.523982] SLOW spr round 32 (radius: 15)
[08:38:17 -16738.523982] SLOW spr round 33 (radius: 20)
[08:40:22 -16737.322807] SLOW spr round 34 (radius: 5)
[08:41:53 -16737.322802] SLOW spr round 35 (radius: 10)
[08:43:18 -16737.322802] SLOW spr round 36 (radius: 15)
[08:44:52 -16737.322802] SLOW spr round 37 (radius: 20)
[08:46:58 -16737.322802] SLOW spr round 38 (radius: 25)
[08:49:37 -16737.322785] Model parameter optimization (eps = 0.100000)

[08:49:44] ML tree search #9, logLikelihood: -16736.782384

[08:49:44 -102765.653871] Initial branch length optimization
[08:49:46 -85052.210732] Model parameter optimization (eps = 10.000000)
[08:50:04 -84801.296998] AUTODETECT spr round 1 (radius: 5)
[08:51:26 -49856.178417] AUTODETECT spr round 2 (radius: 10)
[08:52:54 -33645.930338] AUTODETECT spr round 3 (radius: 15)
[08:54:26 -27518.960043] AUTODETECT spr round 4 (radius: 20)
[08:56:05 -23521.804157] AUTODETECT spr round 5 (radius: 25)
[08:57:46 -22009.783121] SPR radius for FAST iterations: 25 (autodetect)
[08:57:46 -22009.783121] Model parameter optimization (eps = 3.000000)
[08:58:08 -21961.328286] FAST spr round 1 (radius: 25)
[08:59:34 -18484.370324] FAST spr round 2 (radius: 25)
[09:00:53 -18097.438744] FAST spr round 3 (radius: 25)
[09:02:09 -17636.371888] FAST spr round 4 (radius: 25)
[09:03:21 -17099.269442] FAST spr round 5 (radius: 25)
[09:04:35 -17044.726461] FAST spr round 6 (radius: 25)
[09:05:46 -17030.451746] FAST spr round 7 (radius: 25)
[09:06:54 -17030.449644] Model parameter optimization (eps = 1.000000)
[09:07:12 -17020.567979] SLOW spr round 1 (radius: 5)
[09:08:30 -17013.444460] SLOW spr round 2 (radius: 5)
[09:09:46 -17013.440497] SLOW spr round 3 (radius: 10)
[09:11:07 -16942.667795] SLOW spr round 4 (radius: 5)
[09:12:40 -16858.080426] SLOW spr round 5 (radius: 5)
[09:14:04 -16837.828664] SLOW spr round 6 (radius: 5)
[09:15:22 -16833.128731] SLOW spr round 7 (radius: 5)
[09:16:40 -16832.759397] SLOW spr round 8 (radius: 5)
[09:17:55 -16832.758898] SLOW spr round 9 (radius: 10)
[09:19:13 -16831.805722] SLOW spr round 10 (radius: 5)
[09:20:41 -16831.805499] SLOW spr round 11 (radius: 10)
[09:22:04 -16827.974634] SLOW spr round 12 (radius: 5)
[09:23:32 -16826.786244] SLOW spr round 13 (radius: 5)
[09:24:52 -16826.785754] SLOW spr round 14 (radius: 10)
[09:26:10 -16825.843377] SLOW spr round 15 (radius: 5)
[09:27:37 -16824.881464] SLOW spr round 16 (radius: 5)
[09:28:57 -16824.881458] SLOW spr round 17 (radius: 10)
[09:30:15 -16824.881457] SLOW spr round 18 (radius: 15)
[09:31:55 -16801.840483] SLOW spr round 19 (radius: 5)
[09:33:26 -16801.499689] SLOW spr round 20 (radius: 5)
[09:34:49 -16801.499688] SLOW spr round 21 (radius: 10)
[09:36:07 -16801.499687] SLOW spr round 22 (radius: 15)
[09:37:44 -16801.499687] SLOW spr round 23 (radius: 20)
[09:39:49 -16801.331957] SLOW spr round 24 (radius: 5)
[09:41:21 -16801.331956] SLOW spr round 25 (radius: 10)
[09:42:47 -16801.331956] SLOW spr round 26 (radius: 15)
[09:44:23 -16801.331945] SLOW spr round 27 (radius: 20)
[09:46:28 -16801.331945] SLOW spr round 28 (radius: 25)
[09:49:06 -16800.880360] SLOW spr round 29 (radius: 5)
[09:50:39 -16800.879208] SLOW spr round 30 (radius: 10)
[09:52:06 -16800.879111] SLOW spr round 31 (radius: 15)
[09:53:41 -16800.879097] SLOW spr round 32 (radius: 20)
[09:55:46 -16800.879094] SLOW spr round 33 (radius: 25)
[09:58:23 -16800.879094] Model parameter optimization (eps = 0.100000)

[09:58:31] ML tree search #10, logLikelihood: -16800.571112

[09:58:31 -103352.296687] Initial branch length optimization
[09:58:33 -85988.624232] Model parameter optimization (eps = 10.000000)
[09:58:58 -85755.142829] AUTODETECT spr round 1 (radius: 5)
[10:00:22 -48610.302375] AUTODETECT spr round 2 (radius: 10)
[10:01:48 -31403.552038] AUTODETECT spr round 3 (radius: 15)
[10:03:14 -27497.120280] AUTODETECT spr round 4 (radius: 20)
[10:04:50 -22724.037930] AUTODETECT spr round 5 (radius: 25)
[10:06:40 -21218.423987] SPR radius for FAST iterations: 25 (autodetect)
[10:06:40 -21218.423987] Model parameter optimization (eps = 3.000000)
[10:07:01 -21134.985758] FAST spr round 1 (radius: 25)
[10:08:27 -17471.573194] FAST spr round 2 (radius: 25)
[10:09:43 -16833.458512] FAST spr round 3 (radius: 25)
[10:10:56 -16752.177266] FAST spr round 4 (radius: 25)
[10:12:05 -16744.624912] FAST spr round 5 (radius: 25)
[10:13:13 -16744.624767] Model parameter optimization (eps = 1.000000)
[10:13:25 -16743.295956] SLOW spr round 1 (radius: 5)
[10:14:43 -16736.260095] SLOW spr round 2 (radius: 5)
[10:15:58 -16732.833943] SLOW spr round 3 (radius: 5)
[10:17:12 -16732.833504] SLOW spr round 4 (radius: 10)
[10:18:30 -16732.796915] SLOW spr round 5 (radius: 15)
[10:20:05 -16727.548154] SLOW spr round 6 (radius: 5)
[10:21:36 -16726.036934] SLOW spr round 7 (radius: 5)
[10:22:57 -16726.036578] SLOW spr round 8 (radius: 10)
[10:24:15 -16726.036550] SLOW spr round 9 (radius: 15)
[10:25:50 -16725.531197] SLOW spr round 10 (radius: 5)
[10:27:20 -16725.531192] SLOW spr round 11 (radius: 10)
[10:28:43 -16723.980891] SLOW spr round 12 (radius: 5)
[10:30:07 -16723.980891] SLOW spr round 13 (radius: 10)
[10:31:26 -16723.980890] SLOW spr round 14 (radius: 15)
[10:33:00 -16723.980890] SLOW spr round 15 (radius: 20)
[10:35:02 -16723.180172] SLOW spr round 16 (radius: 5)
[10:36:34 -16723.180141] SLOW spr round 17 (radius: 10)
[10:37:59 -16723.180141] SLOW spr round 18 (radius: 15)
[10:39:32 -16723.180141] SLOW spr round 19 (radius: 20)
[10:41:35 -16723.180141] SLOW spr round 20 (radius: 25)
[10:44:04 -16723.180141] Model parameter optimization (eps = 0.100000)

[10:44:08] ML tree search #11, logLikelihood: -16723.155622

[10:44:08 -104071.843083] Initial branch length optimization
[10:44:10 -86807.003386] Model parameter optimization (eps = 10.000000)
[10:44:28 -86527.045693] AUTODETECT spr round 1 (radius: 5)
[10:45:50 -49629.860132] AUTODETECT spr round 2 (radius: 10)
[10:47:16 -32476.418427] AUTODETECT spr round 3 (radius: 15)
[10:48:45 -26399.801434] AUTODETECT spr round 4 (radius: 20)
[10:50:23 -22105.873825] AUTODETECT spr round 5 (radius: 25)
[10:52:08 -20579.350302] SPR radius for FAST iterations: 25 (autodetect)
[10:52:08 -20579.350302] Model parameter optimization (eps = 3.000000)
[10:52:27 -20544.534611] FAST spr round 1 (radius: 25)
[10:53:51 -17372.683877] FAST spr round 2 (radius: 25)
[10:55:07 -17007.207732] FAST spr round 3 (radius: 25)
[10:56:19 -16958.660449] FAST spr round 4 (radius: 25)
[10:57:27 -16955.380709] FAST spr round 5 (radius: 25)
[10:58:34 -16954.631301] FAST spr round 6 (radius: 25)
[10:59:40 -16954.631184] Model parameter optimization (eps = 1.000000)
[10:59:52 -16949.925470] SLOW spr round 1 (radius: 5)
[11:01:09 -16943.554321] SLOW spr round 2 (radius: 5)
[11:02:23 -16943.463988] SLOW spr round 3 (radius: 10)
[11:03:40 -16941.504652] SLOW spr round 4 (radius: 5)
[11:05:05 -16941.504246] SLOW spr round 5 (radius: 10)
[11:06:26 -16941.504114] SLOW spr round 6 (radius: 15)
[11:08:03 -16935.803867] SLOW spr round 7 (radius: 5)
[11:09:33 -16935.800627] SLOW spr round 8 (radius: 10)
[11:10:55 -16935.800625] SLOW spr round 9 (radius: 15)
[11:12:31 -16935.800625] SLOW spr round 10 (radius: 20)
[11:14:36 -16932.386600] SLOW spr round 11 (radius: 5)
[11:16:07 -16932.297006] SLOW spr round 12 (radius: 10)
[11:17:33 -16915.207626] SLOW spr round 13 (radius: 5)
[11:19:00 -16911.624209] SLOW spr round 14 (radius: 5)
[11:20:18 -16911.601053] SLOW spr round 15 (radius: 10)
[11:21:35 -16911.600616] SLOW spr round 16 (radius: 15)
[11:23:12 -16911.600505] SLOW spr round 17 (radius: 20)
[11:25:15 -16909.303140] SLOW spr round 18 (radius: 5)
[11:26:48 -16907.790606] SLOW spr round 19 (radius: 5)
[11:28:10 -16907.790535] SLOW spr round 20 (radius: 10)
[11:29:28 -16907.790495] SLOW spr round 21 (radius: 15)
[11:31:05 -16907.790458] SLOW spr round 22 (radius: 20)
[11:33:08 -16907.790424] SLOW spr round 23 (radius: 25)
[11:35:40 -16843.498683] SLOW spr round 24 (radius: 5)
[11:37:15 -16818.219391] SLOW spr round 25 (radius: 5)
[11:38:42 -16812.433200] SLOW spr round 26 (radius: 5)
[11:40:00 -16812.129265] SLOW spr round 27 (radius: 5)
[11:41:15 -16812.127593] SLOW spr round 28 (radius: 10)
[11:42:32 -16812.127404] SLOW spr round 29 (radius: 15)
[11:44:10 -16762.007772] SLOW spr round 30 (radius: 5)
[11:45:43 -16731.799943] SLOW spr round 31 (radius: 5)
[11:47:05 -16731.795916] SLOW spr round 32 (radius: 10)
[11:48:23 -16731.147001] SLOW spr round 33 (radius: 5)
[11:49:49 -16731.118011] SLOW spr round 34 (radius: 10)
[11:51:09 -16731.117285] SLOW spr round 35 (radius: 15)
[11:52:44 -16731.117233] SLOW spr round 36 (radius: 20)
[11:54:47 -16731.117223] SLOW spr round 37 (radius: 25)
[11:57:21 -16728.739033] SLOW spr round 38 (radius: 5)
[11:58:53 -16728.709127] SLOW spr round 39 (radius: 10)
[12:00:19 -16728.708737] SLOW spr round 40 (radius: 15)
[12:01:53 -16728.708720] SLOW spr round 41 (radius: 20)
[12:03:57 -16728.708716] SLOW spr round 42 (radius: 25)
[12:06:27 -16728.708714] Model parameter optimization (eps = 0.100000)

[12:06:33] ML tree search #12, logLikelihood: -16728.304994

[12:06:33 -103226.417226] Initial branch length optimization
[12:06:35 -86255.915640] Model parameter optimization (eps = 10.000000)
[12:06:54 -86032.913752] AUTODETECT spr round 1 (radius: 5)
[12:08:19 -48748.194708] AUTODETECT spr round 2 (radius: 10)
[12:09:49 -35628.096167] AUTODETECT spr round 3 (radius: 15)
[12:11:22 -28753.848959] AUTODETECT spr round 4 (radius: 20)
[12:13:04 -22656.326290] AUTODETECT spr round 5 (radius: 25)
[12:15:04 -21130.207465] SPR radius for FAST iterations: 25 (autodetect)
[12:15:04 -21130.207465] Model parameter optimization (eps = 3.000000)
[12:15:26 -21068.319404] FAST spr round 1 (radius: 25)
[12:16:50 -17479.389154] FAST spr round 2 (radius: 25)
[12:18:12 -16943.503909] FAST spr round 3 (radius: 25)
[12:19:27 -16816.327279] FAST spr round 4 (radius: 25)
[12:20:40 -16779.454526] FAST spr round 5 (radius: 25)
[12:21:51 -16771.931899] FAST spr round 6 (radius: 25)
[12:22:59 -16766.297187] FAST spr round 7 (radius: 25)
[12:24:07 -16766.297106] Model parameter optimization (eps = 1.000000)
[12:24:23 -16758.325407] SLOW spr round 1 (radius: 5)
[12:25:40 -16754.653148] SLOW spr round 2 (radius: 5)
[12:26:57 -16754.580804] SLOW spr round 3 (radius: 10)
[12:28:15 -16744.363536] SLOW spr round 4 (radius: 5)
[12:29:45 -16740.489307] SLOW spr round 5 (radius: 5)
[12:31:06 -16740.488686] SLOW spr round 6 (radius: 10)
[12:32:24 -16740.488646] SLOW spr round 7 (radius: 15)
[12:34:08 -16736.472762] SLOW spr round 8 (radius: 5)
[12:35:41 -16732.711009] SLOW spr round 9 (radius: 5)
[12:37:04 -16732.261505] SLOW spr round 10 (radius: 5)
[12:38:21 -16732.261486] SLOW spr round 11 (radius: 10)
[12:39:37 -16732.261483] SLOW spr round 12 (radius: 15)
[12:41:20 -16732.261482] SLOW spr round 13 (radius: 20)
[12:43:39 -16732.180970] SLOW spr round 14 (radius: 25)
[12:46:41 -16732.180970] Model parameter optimization (eps = 0.100000)

[12:46:46] ML tree search #13, logLikelihood: -16732.143775

[12:46:46 -103622.731729] Initial branch length optimization
[12:46:48 -86395.980505] Model parameter optimization (eps = 10.000000)
[12:47:07 -86140.237345] AUTODETECT spr round 1 (radius: 5)
[12:48:29 -49702.858365] AUTODETECT spr round 2 (radius: 10)
[12:49:56 -33560.777582] AUTODETECT spr round 3 (radius: 15)
[12:51:26 -26600.328176] AUTODETECT spr round 4 (radius: 20)
[12:53:07 -23798.421349] AUTODETECT spr round 5 (radius: 25)
[12:54:51 -21805.277858] SPR radius for FAST iterations: 25 (autodetect)
[12:54:51 -21805.277858] Model parameter optimization (eps = 3.000000)
[12:55:05 -21739.091075] FAST spr round 1 (radius: 25)
[12:56:34 -17275.678842] FAST spr round 2 (radius: 25)
[12:57:49 -16809.766667] FAST spr round 3 (radius: 25)
[12:59:01 -16761.626596] FAST spr round 4 (radius: 25)
[13:00:09 -16758.296041] FAST spr round 5 (radius: 25)
[13:01:17 -16756.923232] FAST spr round 6 (radius: 25)
[13:02:23 -16756.922869] Model parameter optimization (eps = 1.000000)
[13:02:31 -16754.553200] SLOW spr round 1 (radius: 5)
[13:03:46 -16750.419196] SLOW spr round 2 (radius: 5)
[13:04:59 -16750.314365] SLOW spr round 3 (radius: 5)
[13:06:12 -16750.313657] SLOW spr round 4 (radius: 10)
[13:07:30 -16750.216837] SLOW spr round 5 (radius: 15)
[13:09:09 -16745.307952] SLOW spr round 6 (radius: 5)
[13:10:45 -16734.363302] SLOW spr round 7 (radius: 5)
[13:12:12 -16731.536060] SLOW spr round 8 (radius: 5)
[13:13:34 -16731.117976] SLOW spr round 9 (radius: 5)
[13:14:51 -16731.116819] SLOW spr round 10 (radius: 10)
[13:16:11 -16731.116508] SLOW spr round 11 (radius: 15)
[13:17:54 -16730.586667] SLOW spr round 12 (radius: 5)
[13:19:28 -16730.586628] SLOW spr round 13 (radius: 10)
[13:20:55 -16730.516350] SLOW spr round 14 (radius: 15)
[13:22:36 -16729.266079] SLOW spr round 15 (radius: 5)
[13:24:10 -16729.266071] SLOW spr round 16 (radius: 10)
[13:25:37 -16729.266063] SLOW spr round 17 (radius: 15)
[13:27:17 -16729.266057] SLOW spr round 18 (radius: 20)
[13:29:33 -16727.973503] SLOW spr round 19 (radius: 5)
[13:31:09 -16727.973256] SLOW spr round 20 (radius: 10)
[13:32:38 -16727.973250] SLOW spr round 21 (radius: 15)
[13:34:18 -16727.973245] SLOW spr round 22 (radius: 20)
[13:36:35 -16727.973241] SLOW spr round 23 (radius: 25)
[13:39:19 -16727.973237] Model parameter optimization (eps = 0.100000)

[13:39:23] ML tree search #14, logLikelihood: -16727.949943

[13:39:23 -103475.224194] Initial branch length optimization
[13:39:25 -86019.690275] Model parameter optimization (eps = 10.000000)
[13:39:44 -85769.202278] AUTODETECT spr round 1 (radius: 5)
[13:41:09 -49478.515852] AUTODETECT spr round 2 (radius: 10)
[13:42:39 -33388.186588] AUTODETECT spr round 3 (radius: 15)
[13:44:17 -27124.352461] AUTODETECT spr round 4 (radius: 20)
[13:45:56 -23170.696777] AUTODETECT spr round 5 (radius: 25)
[13:47:51 -21665.104073] SPR radius for FAST iterations: 25 (autodetect)
[13:47:51 -21665.104073] Model parameter optimization (eps = 3.000000)
[13:48:09 -21619.357903] FAST spr round 1 (radius: 25)
[13:49:38 -18027.889913] FAST spr round 2 (radius: 25)
[13:50:57 -17107.905921] FAST spr round 3 (radius: 25)
[13:52:13 -16955.909157] FAST spr round 4 (radius: 25)
[13:53:26 -16944.388857] FAST spr round 5 (radius: 25)
[13:54:37 -16928.232467] FAST spr round 6 (radius: 25)
[13:55:46 -16928.230782] Model parameter optimization (eps = 1.000000)
[13:56:03 -16924.909506] SLOW spr round 1 (radius: 5)
[13:57:21 -16914.937586] SLOW spr round 2 (radius: 5)
[13:58:41 -16910.945761] SLOW spr round 3 (radius: 5)
[14:00:01 -16910.940009] SLOW spr round 4 (radius: 10)
[14:01:22 -16910.435345] SLOW spr round 5 (radius: 5)
[14:02:53 -16910.080375] SLOW spr round 6 (radius: 5)
[14:04:16 -16910.080133] SLOW spr round 7 (radius: 10)
[14:05:38 -16908.488370] SLOW spr round 8 (radius: 5)
[14:07:09 -16908.486709] SLOW spr round 9 (radius: 10)
[14:08:33 -16908.486384] SLOW spr round 10 (radius: 15)
[14:10:15 -16777.857971] SLOW spr round 11 (radius: 5)
[14:11:52 -16743.558823] SLOW spr round 12 (radius: 5)
[14:13:19 -16743.243010] SLOW spr round 13 (radius: 5)
[14:14:39 -16742.529373] SLOW spr round 14 (radius: 5)
[14:15:57 -16742.529282] SLOW spr round 15 (radius: 10)
[14:17:19 -16741.791134] SLOW spr round 16 (radius: 5)
[14:18:51 -16740.478911] SLOW spr round 17 (radius: 5)
[14:20:14 -16740.478161] SLOW spr round 18 (radius: 10)
[14:21:34 -16740.478136] SLOW spr round 19 (radius: 15)
[14:23:13 -16740.478134] SLOW spr round 20 (radius: 20)
[14:25:21 -16736.243897] SLOW spr round 21 (radius: 5)
[14:26:56 -16736.242168] SLOW spr round 22 (radius: 10)
[14:28:24 -16736.242062] SLOW spr round 23 (radius: 15)
[14:30:00 -16736.242052] SLOW spr round 24 (radius: 20)
[14:32:06 -16736.242051] SLOW spr round 25 (radius: 25)
[14:34:44 -16735.449094] SLOW spr round 26 (radius: 5)
[14:36:18 -16735.449066] SLOW spr round 27 (radius: 10)
[14:37:45 -16735.449066] SLOW spr round 28 (radius: 15)
[14:39:23 -16735.449066] SLOW spr round 29 (radius: 20)
[14:41:29 -16735.449066] SLOW spr round 30 (radius: 25)
[14:44:06 -16735.449066] Model parameter optimization (eps = 0.100000)

[14:44:13] ML tree search #15, logLikelihood: -16735.079246

[14:44:13 -102810.090160] Initial branch length optimization
[14:44:15 -85167.347463] Model parameter optimization (eps = 10.000000)
[14:44:34 -84916.227342] AUTODETECT spr round 1 (radius: 5)
[14:46:00 -51269.163081] AUTODETECT spr round 2 (radius: 10)
[14:47:31 -34252.719054] AUTODETECT spr round 3 (radius: 15)
[14:49:05 -28162.476518] AUTODETECT spr round 4 (radius: 20)
[14:50:56 -22804.905762] AUTODETECT spr round 5 (radius: 25)
[14:52:45 -20717.335108] SPR radius for FAST iterations: 25 (autodetect)
[14:52:45 -20717.335108] Model parameter optimization (eps = 3.000000)
[14:53:03 -20670.782091] FAST spr round 1 (radius: 25)
[14:54:27 -16946.910457] FAST spr round 2 (radius: 25)
[14:55:43 -16777.122054] FAST spr round 3 (radius: 25)
[14:56:56 -16754.122003] FAST spr round 4 (radius: 25)
[14:58:04 -16754.112190] Model parameter optimization (eps = 1.000000)
[14:58:16 -16749.813952] SLOW spr round 1 (radius: 5)
[14:59:32 -16745.595504] SLOW spr round 2 (radius: 5)
[15:00:48 -16744.548945] SLOW spr round 3 (radius: 5)
[15:02:04 -16743.217255] SLOW spr round 4 (radius: 5)
[15:03:18 -16743.216508] SLOW spr round 5 (radius: 10)
[15:04:37 -16736.865149] SLOW spr round 6 (radius: 5)
[15:06:05 -16735.599304] SLOW spr round 7 (radius: 5)
[15:07:25 -16735.596463] SLOW spr round 8 (radius: 10)
[15:08:43 -16735.596064] SLOW spr round 9 (radius: 15)
[15:10:22 -16728.267168] SLOW spr round 10 (radius: 5)
[15:11:55 -16723.788774] SLOW spr round 11 (radius: 5)
[15:13:18 -16723.640925] SLOW spr round 12 (radius: 5)
[15:14:34 -16723.633690] SLOW spr round 13 (radius: 10)
[15:15:52 -16723.633534] SLOW spr round 14 (radius: 15)
[15:17:28 -16723.075247] SLOW spr round 15 (radius: 5)
[15:18:58 -16722.684240] SLOW spr round 16 (radius: 5)
[15:20:20 -16722.684007] SLOW spr round 17 (radius: 10)
[15:21:40 -16721.120872] SLOW spr round 18 (radius: 5)
[15:23:06 -16721.084826] SLOW spr round 19 (radius: 10)
[15:24:26 -16721.084301] SLOW spr round 20 (radius: 15)
[15:26:01 -16721.084235] SLOW spr round 21 (radius: 20)
[15:28:05 -16721.084214] SLOW spr round 22 (radius: 25)
[15:30:41 -16720.672353] SLOW spr round 23 (radius: 5)
[15:32:14 -16720.672322] SLOW spr round 24 (radius: 10)
[15:33:43 -16717.782516] SLOW spr round 25 (radius: 5)
[15:35:08 -16717.781804] SLOW spr round 26 (radius: 10)
[15:36:30 -16717.781733] SLOW spr round 27 (radius: 15)
[15:38:07 -16717.781718] SLOW spr round 28 (radius: 20)
[15:40:14 -16717.781710] SLOW spr round 29 (radius: 25)
[15:42:53 -16717.781703] Model parameter optimization (eps = 0.100000)

[15:43:04] ML tree search #16, logLikelihood: -16717.094745

[15:43:04 -103458.485389] Initial branch length optimization
[15:43:06 -86124.162048] Model parameter optimization (eps = 10.000000)
[15:43:23 -85779.363819] AUTODETECT spr round 1 (radius: 5)
[15:44:47 -48479.804977] AUTODETECT spr round 2 (radius: 10)
[15:46:17 -31513.700375] AUTODETECT spr round 3 (radius: 15)
[15:47:53 -25496.272546] AUTODETECT spr round 4 (radius: 20)
[15:49:37 -22598.245895] AUTODETECT spr round 5 (radius: 25)
[15:51:34 -20920.214719] SPR radius for FAST iterations: 25 (autodetect)
[15:51:34 -20920.214719] Model parameter optimization (eps = 3.000000)
[15:52:03 -20872.889813] FAST spr round 1 (radius: 25)
[15:53:28 -17296.735672] FAST spr round 2 (radius: 25)
[15:54:46 -16795.333303] FAST spr round 3 (radius: 25)
[15:55:59 -16775.156119] FAST spr round 4 (radius: 25)
[15:57:11 -16773.906665] FAST spr round 5 (radius: 25)
[15:58:21 -16773.906150] Model parameter optimization (eps = 1.000000)
[15:58:29 -16770.654068] SLOW spr round 1 (radius: 5)
[15:59:47 -16768.181122] SLOW spr round 2 (radius: 5)
[16:01:02 -16767.923925] SLOW spr round 3 (radius: 5)
[16:02:18 -16767.669683] SLOW spr round 4 (radius: 5)
[16:03:33 -16767.572937] SLOW spr round 5 (radius: 10)
[16:04:52 -16766.550516] SLOW spr round 6 (radius: 5)
[16:06:21 -16762.719899] SLOW spr round 7 (radius: 5)
[16:07:41 -16756.757035] SLOW spr round 8 (radius: 5)
[16:08:56 -16756.757025] SLOW spr round 9 (radius: 10)
[16:10:14 -16756.757024] SLOW spr round 10 (radius: 15)
[16:11:54 -16756.282024] SLOW spr round 11 (radius: 5)
[16:13:24 -16756.282024] SLOW spr round 12 (radius: 10)
[16:14:48 -16754.594855] SLOW spr round 13 (radius: 5)
[16:16:12 -16754.594248] SLOW spr round 14 (radius: 10)
[16:17:32 -16754.594202] SLOW spr round 15 (radius: 15)
[16:19:10 -16754.594195] SLOW spr round 16 (radius: 20)
[16:21:23 -16749.889427] SLOW spr round 17 (radius: 5)
[16:22:56 -16748.981126] SLOW spr round 18 (radius: 5)
[16:24:21 -16746.815230] SLOW spr round 19 (radius: 5)
[16:25:38 -16746.715719] SLOW spr round 20 (radius: 10)
[16:26:57 -16746.715510] SLOW spr round 21 (radius: 15)
[16:28:34 -16746.715477] SLOW spr round 22 (radius: 20)
[16:30:48 -16746.715453] SLOW spr round 23 (radius: 25)
[16:33:38 -16744.348739] SLOW spr round 24 (radius: 5)
[16:35:11 -16744.348584] SLOW spr round 25 (radius: 10)
[16:36:38 -16744.149725] SLOW spr round 26 (radius: 5)
[16:38:03 -16744.149709] SLOW spr round 27 (radius: 10)
[16:39:23 -16744.149695] SLOW spr round 28 (radius: 15)
[16:40:59 -16744.149682] SLOW spr round 29 (radius: 20)
[16:43:10 -16744.149670] SLOW spr round 30 (radius: 25)
[16:45:58 -16744.149660] Model parameter optimization (eps = 0.100000)

[16:46:05] ML tree search #17, logLikelihood: -16744.081533

[16:46:05 -103221.983070] Initial branch length optimization
[16:46:07 -85494.112447] Model parameter optimization (eps = 10.000000)
[16:46:27 -85251.495877] AUTODETECT spr round 1 (radius: 5)
[16:47:49 -50405.785603] AUTODETECT spr round 2 (radius: 10)
[16:49:19 -33834.096172] AUTODETECT spr round 3 (radius: 15)
[16:50:50 -25133.798617] AUTODETECT spr round 4 (radius: 20)
[16:52:29 -21340.049580] AUTODETECT spr round 5 (radius: 25)
[16:54:11 -20196.584521] SPR radius for FAST iterations: 25 (autodetect)
[16:54:11 -20196.584521] Model parameter optimization (eps = 3.000000)
[16:54:32 -20166.241573] FAST spr round 1 (radius: 25)
[16:55:57 -17363.984223] FAST spr round 2 (radius: 25)
[16:57:11 -17081.683253] FAST spr round 3 (radius: 25)
[16:58:25 -16933.567735] FAST spr round 4 (radius: 25)
[16:59:37 -16860.972571] FAST spr round 5 (radius: 25)
[17:00:48 -16845.963431] FAST spr round 6 (radius: 25)
[17:01:57 -16841.134017] FAST spr round 7 (radius: 25)
[17:03:05 -16840.320206] FAST spr round 8 (radius: 25)
[17:04:12 -16840.320126] Model parameter optimization (eps = 1.000000)
[17:04:28 -16832.271451] SLOW spr round 1 (radius: 5)
[17:05:44 -16823.484820] SLOW spr round 2 (radius: 5)
[17:07:00 -16823.097833] SLOW spr round 3 (radius: 5)
[17:08:14 -16823.097277] SLOW spr round 4 (radius: 10)
[17:09:33 -16781.125185] SLOW spr round 5 (radius: 5)
[17:11:01 -16763.339689] SLOW spr round 6 (radius: 5)
[17:12:22 -16763.339528] SLOW spr round 7 (radius: 10)
[17:13:39 -16763.339506] SLOW spr round 8 (radius: 15)
[17:15:19 -16762.135201] SLOW spr round 9 (radius: 5)
[17:16:49 -16761.681797] SLOW spr round 10 (radius: 5)
[17:18:11 -16761.681737] SLOW spr round 11 (radius: 10)
[17:19:29 -16761.681726] SLOW spr round 12 (radius: 15)
[17:21:07 -16761.681720] SLOW spr round 13 (radius: 20)
[17:23:14 -16741.486121] SLOW spr round 14 (radius: 5)
[17:24:47 -16737.071883] SLOW spr round 15 (radius: 5)
[17:26:09 -16737.071658] SLOW spr round 16 (radius: 10)
[17:27:28 -16737.071652] SLOW spr round 17 (radius: 15)
[17:29:05 -16737.071649] SLOW spr round 18 (radius: 20)
[17:31:10 -16737.071649] SLOW spr round 19 (radius: 25)
[17:33:45 -16734.125514] SLOW spr round 20 (radius: 5)
[17:35:19 -16733.583718] SLOW spr round 21 (radius: 5)
[17:36:43 -16733.582613] SLOW spr round 22 (radius: 10)
[17:38:03 -16733.582275] SLOW spr round 23 (radius: 15)
[17:39:40 -16733.435222] SLOW spr round 24 (radius: 5)
[17:41:10 -16733.256621] SLOW spr round 25 (radius: 5)
[17:42:30 -16733.256557] SLOW spr round 26 (radius: 10)
[17:43:48 -16732.727918] SLOW spr round 27 (radius: 5)
[17:45:12 -16732.727915] SLOW spr round 28 (radius: 10)
[17:46:33 -16732.727914] SLOW spr round 29 (radius: 15)
[17:48:10 -16732.652532] SLOW spr round 30 (radius: 20)
[17:50:15 -16732.652532] SLOW spr round 31 (radius: 25)
[17:52:55 -16732.652532] Model parameter optimization (eps = 0.100000)

[17:53:00] ML tree search #18, logLikelihood: -16732.609063

[17:53:00 -103642.884881] Initial branch length optimization
[17:53:02 -86175.840949] Model parameter optimization (eps = 10.000000)
[17:53:21 -85935.642933] AUTODETECT spr round 1 (radius: 5)
[17:54:43 -47781.610077] AUTODETECT spr round 2 (radius: 10)
[17:56:08 -32075.213365] AUTODETECT spr round 3 (radius: 15)
[17:57:37 -26605.117985] AUTODETECT spr round 4 (radius: 20)
[17:59:15 -22646.845910] AUTODETECT spr round 5 (radius: 25)
[18:00:54 -20987.947962] SPR radius for FAST iterations: 25 (autodetect)
[18:00:54 -20987.947962] Model parameter optimization (eps = 3.000000)
[18:01:20 -20942.319289] FAST spr round 1 (radius: 25)
[18:02:46 -17321.188715] FAST spr round 2 (radius: 25)
[18:04:02 -16860.581200] FAST spr round 3 (radius: 25)
[18:05:14 -16759.859614] FAST spr round 4 (radius: 25)
[18:06:21 -16756.081637] FAST spr round 5 (radius: 25)
[18:07:27 -16756.079098] Model parameter optimization (eps = 1.000000)
[18:07:40 -16749.653549] SLOW spr round 1 (radius: 5)
[18:08:55 -16748.274945] SLOW spr round 2 (radius: 5)
[18:10:09 -16746.575681] SLOW spr round 3 (radius: 5)
[18:11:24 -16746.574560] SLOW spr round 4 (radius: 10)
[18:12:43 -16745.620744] SLOW spr round 5 (radius: 5)
[18:14:11 -16743.858001] SLOW spr round 6 (radius: 5)
[18:15:29 -16743.356704] SLOW spr round 7 (radius: 5)
[18:16:43 -16743.356675] SLOW spr round 8 (radius: 10)
[18:18:00 -16743.171400] SLOW spr round 9 (radius: 5)
[18:19:27 -16742.799683] SLOW spr round 10 (radius: 5)
[18:20:45 -16742.798324] SLOW spr round 11 (radius: 10)
[18:22:02 -16742.798141] SLOW spr round 12 (radius: 15)
[18:23:40 -16742.741555] SLOW spr round 13 (radius: 20)
[18:25:51 -16742.741550] SLOW spr round 14 (radius: 25)
[18:28:40 -16730.839534] SLOW spr round 15 (radius: 5)
[18:30:14 -16725.069383] SLOW spr round 16 (radius: 5)
[18:31:38 -16724.845120] SLOW spr round 17 (radius: 5)
[18:32:57 -16724.841175] SLOW spr round 18 (radius: 10)
[18:34:15 -16724.187792] SLOW spr round 19 (radius: 5)
[18:35:46 -16722.672404] SLOW spr round 20 (radius: 5)
[18:37:11 -16722.412119] SLOW spr round 21 (radius: 5)
[18:38:31 -16722.410485] SLOW spr round 22 (radius: 10)
[18:39:52 -16722.410333] SLOW spr round 23 (radius: 15)
[18:41:30 -16722.410315] SLOW spr round 24 (radius: 20)
[18:43:38 -16719.953728] SLOW spr round 25 (radius: 5)
[18:45:11 -16719.902980] SLOW spr round 26 (radius: 10)
[18:46:37 -16719.901905] SLOW spr round 27 (radius: 15)
[18:48:14 -16719.901782] SLOW spr round 28 (radius: 20)
[18:50:23 -16719.901736] SLOW spr round 29 (radius: 25)
[18:53:06 -16719.901706] Model parameter optimization (eps = 0.100000)

[18:53:12] ML tree search #19, logLikelihood: -16719.844607

[18:53:12 -102967.400540] Initial branch length optimization
[18:53:14 -85787.072805] Model parameter optimization (eps = 10.000000)
[18:53:36 -85485.550352] AUTODETECT spr round 1 (radius: 5)
[18:54:58 -48794.573420] AUTODETECT spr round 2 (radius: 10)
[18:56:24 -33885.088717] AUTODETECT spr round 3 (radius: 15)
[18:57:57 -24190.409472] AUTODETECT spr round 4 (radius: 20)
[18:59:39 -22024.680200] AUTODETECT spr round 5 (radius: 25)
[19:01:24 -20157.213736] SPR radius for FAST iterations: 25 (autodetect)
[19:01:24 -20157.213736] Model parameter optimization (eps = 3.000000)
[19:01:48 -20123.795772] FAST spr round 1 (radius: 25)
[19:03:10 -17381.155334] FAST spr round 2 (radius: 25)
[19:04:24 -17035.153320] FAST spr round 3 (radius: 25)
[19:05:37 -16998.230225] FAST spr round 4 (radius: 25)
[19:06:45 -16994.610982] FAST spr round 5 (radius: 25)
[19:07:52 -16994.610753] Model parameter optimization (eps = 1.000000)
[19:08:02 -16989.536482] SLOW spr round 1 (radius: 5)
[19:09:19 -16985.103658] SLOW spr round 2 (radius: 5)
[19:10:35 -16984.367289] SLOW spr round 3 (radius: 5)
[19:11:49 -16984.365847] SLOW spr round 4 (radius: 10)
[19:13:08 -16975.989135] SLOW spr round 5 (radius: 5)
[19:14:35 -16971.411452] SLOW spr round 6 (radius: 5)
[19:15:54 -16971.409203] SLOW spr round 7 (radius: 10)
[19:17:12 -16970.913266] SLOW spr round 8 (radius: 5)
[19:18:38 -16970.913046] SLOW spr round 9 (radius: 10)
[19:19:59 -16970.879731] SLOW spr round 10 (radius: 15)
[19:21:36 -16970.417766] SLOW spr round 11 (radius: 5)
[19:23:06 -16970.417749] SLOW spr round 12 (radius: 10)
[19:24:31 -16970.417748] SLOW spr round 13 (radius: 15)
[19:26:07 -16970.417748] SLOW spr round 14 (radius: 20)
[19:28:14 -16963.512152] SLOW spr round 15 (radius: 5)
[19:29:49 -16918.155321] SLOW spr round 16 (radius: 5)
[19:31:15 -16737.090533] SLOW spr round 17 (radius: 5)
[19:32:34 -16731.619374] SLOW spr round 18 (radius: 5)
[19:33:49 -16731.617959] SLOW spr round 19 (radius: 10)
[19:35:06 -16729.353173] SLOW spr round 20 (radius: 5)
[19:36:32 -16729.353038] SLOW spr round 21 (radius: 10)
[19:37:52 -16729.353030] SLOW spr round 22 (radius: 15)
[19:39:29 -16729.089243] SLOW spr round 23 (radius: 5)
[19:40:59 -16729.089215] SLOW spr round 24 (radius: 10)
[19:42:23 -16729.089209] SLOW spr round 25 (radius: 15)
[19:43:58 -16729.089204] SLOW spr round 26 (radius: 20)
[19:46:07 -16729.089170] SLOW spr round 27 (radius: 25)
[19:48:51 -16727.632970] SLOW spr round 28 (radius: 5)
[19:50:23 -16727.632965] SLOW spr round 29 (radius: 10)
[19:51:50 -16727.632965] SLOW spr round 30 (radius: 15)
[19:53:26 -16727.418966] SLOW spr round 31 (radius: 5)
[19:54:57 -16727.418961] SLOW spr round 32 (radius: 10)
[19:56:21 -16727.418960] SLOW spr round 33 (radius: 15)
[19:57:58 -16727.418960] SLOW spr round 34 (radius: 20)
[20:00:07 -16727.418960] SLOW spr round 35 (radius: 25)
[20:02:51 -16726.946392] SLOW spr round 36 (radius: 5)
[20:04:23 -16726.946372] SLOW spr round 37 (radius: 10)
[20:05:51 -16726.946371] SLOW spr round 38 (radius: 15)
[20:07:26 -16726.946371] SLOW spr round 39 (radius: 20)
[20:09:33 -16726.946371] SLOW spr round 40 (radius: 25)
[20:12:14 -16726.946371] Model parameter optimization (eps = 0.100000)

[20:12:20] ML tree search #20, logLikelihood: -16726.743170


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.257905,0.479595) (0.191243,0.620771) (0.454130,1.196384) (0.096722,2.215402) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -16717.094745

AIC score: 37352.189490 / AICc score: 7716632.189490 / BIC score: 41519.245750
Free parameters (model + branch lengths): 1959

WARNING: Number of free parameters (K=1959) is larger than alignment size (n=62).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 530 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/3_mltree/Q9H5P4.raxml.bestTreeCollapsed
Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/3_mltree/Q9H5P4.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/3_mltree/Q9H5P4.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/3_mltree/Q9H5P4.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9H5P4/3_mltree/Q9H5P4.raxml.log

Analysis started: 17-Jul-2021 11:50:12 / finished: 18-Jul-2021 08:02:33

Elapsed time: 72740.889 seconds