RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 02-Jun-2021 18:36:19 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H4W6/2_msa/Q9H4W6_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H4W6/3_mltree/Q9H4W6.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H4W6/4_raxmlng_ancestral/Q9H4W6 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622648179 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H4W6/2_msa/Q9H4W6_nogap_msa.fasta [00:00:00] Loaded alignment with 634 taxa and 596 sites WARNING: Sequences tr_E1C814_E1C814_CHICK_9031 and tr_G1MQ56_G1MQ56_MELGA_9103 are exactly identical! WARNING: Sequences sp_O08791_COE3_MOUSE_10090 and tr_D4A274_D4A274_RAT_10116 are exactly identical! WARNING: Sequences sp_O08791_COE3_MOUSE_10090 and tr_F7B409_F7B409_MACMU_9544 are exactly identical! WARNING: Sequences sp_O08791_COE3_MOUSE_10090 and tr_A0A2K5KRR6_A0A2K5KRR6_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q07802_COE1_MOUSE_10090 and tr_A0A2I3HUT3_A0A2I3HUT3_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q07802_COE1_MOUSE_10090 and tr_G3QCT5_G3QCT5_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q07802_COE1_MOUSE_10090 and tr_H2PH80_H2PH80_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q07802_COE1_MOUSE_10090 and tr_H2QRX0_H2QRX0_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q07802_COE1_MOUSE_10090 and sp_Q9UH73_COE1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q07802_COE1_MOUSE_10090 and tr_A0A1D5R8G8_A0A1D5R8G8_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q07802_COE1_MOUSE_10090 and tr_F7I410_F7I410_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q07802_COE1_MOUSE_10090 and tr_A0A2I3N9Y7_A0A2I3N9Y7_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q07802_COE1_MOUSE_10090 and tr_A0A1S3GUB4_A0A1S3GUB4_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q07802_COE1_MOUSE_10090 and tr_A0A2K5NL69_A0A2K5NL69_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q07802_COE1_MOUSE_10090 and tr_A0A2K6BUH7_A0A2K6BUH7_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q07802_COE1_MOUSE_10090 and tr_A0A2R8ZFS8_A0A2R8ZFS8_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3XVR2_M3XVR2_MUSPF_9669 and tr_G1S2A8_G1S2A8_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3XVR2_M3XVR2_MUSPF_9669 and tr_G3QGU9_G3QGU9_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3XVR2_M3XVR2_MUSPF_9669 and tr_H2PPV8_H2PPV8_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3XVR2_M3XVR2_MUSPF_9669 and tr_A0A2I3SV18_A0A2I3SV18_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3XVR2_M3XVR2_MUSPF_9669 and sp_Q9HAK2_COE2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3XVR2_M3XVR2_MUSPF_9669 and tr_F6S1T9_F6S1T9_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3XVR2_M3XVR2_MUSPF_9669 and tr_F6UBL8_F6UBL8_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3XVR2_M3XVR2_MUSPF_9669 and tr_A0A096N690_A0A096N690_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3XVR2_M3XVR2_MUSPF_9669 and tr_A0A2K5N446_A0A2K5N446_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3XVR2_M3XVR2_MUSPF_9669 and tr_A0A2K6DG31_A0A2K6DG31_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3XVR2_M3XVR2_MUSPF_9669 and tr_A0A2K5Z2U8_A0A2K5Z2U8_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3XVR2_M3XVR2_MUSPF_9669 and tr_A0A2R9ADM2_A0A2R9ADM2_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YCG0_M3YCG0_MUSPF_9669 and tr_A0A2Y9INK1_A0A2Y9INK1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_H2LMW4_H2LMW4_ORYLA_8090 and tr_M4AE70_M4AE70_XIPMA_8083 are exactly identical! WARNING: Sequences tr_G1N055_G1N055_MELGA_9103 and tr_U3J758_U3J758_ANAPL_8839 are exactly identical! WARNING: Sequences tr_G1N055_G1N055_MELGA_9103 and tr_A0A091EFU3_A0A091EFU3_CORBR_85066 are exactly identical! WARNING: Sequences tr_G1N055_G1N055_MELGA_9103 and tr_A0A091V5K2_A0A091V5K2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G1N055_G1N055_MELGA_9103 and tr_A0A093HVM5_A0A093HVM5_STRCA_441894 are exactly identical! WARNING: Sequences tr_G1N055_G1N055_MELGA_9103 and tr_A0A0A0A162_A0A0A0A162_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F7FNQ0_F7FNQ0_ORNAN_9258 and tr_F7DJ52_F7DJ52_MONDO_13616 are exactly identical! WARNING: Sequences tr_W5PJB7_W5PJB7_SHEEP_9940 and tr_D3ZT68_D3ZT68_RAT_10116 are exactly identical! WARNING: Sequences tr_W5PJB7_W5PJB7_SHEEP_9940 and tr_I3MAR8_I3MAR8_ICTTR_43179 are exactly identical! WARNING: Sequences tr_W5PJB7_W5PJB7_SHEEP_9940 and tr_G3TQJ4_G3TQJ4_LOXAF_9785 are exactly identical! WARNING: Sequences tr_W5PJB7_W5PJB7_SHEEP_9940 and tr_F2Z510_F2Z510_PIG_9823 are exactly identical! WARNING: Sequences tr_W5PJB7_W5PJB7_SHEEP_9940 and sp_Q08DL5_COE2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PJB7_W5PJB7_SHEEP_9940 and tr_A0A1U7QMC9_A0A1U7QMC9_MESAU_10036 are exactly identical! WARNING: Sequences tr_W5PJB7_W5PJB7_SHEEP_9940 and tr_A0A2Y9KBE9_A0A2Y9KBE9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_W5PTQ1_W5PTQ1_SHEEP_9940 and tr_A0A2U3YCR9_A0A2U3YCR9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_K7GEY1_K7GEY1_PELSI_13735 and tr_H0ZMZ6_H0ZMZ6_TAEGU_59729 are exactly identical! WARNING: Sequences tr_K7GEY1_K7GEY1_PELSI_13735 and tr_U3JEQ9_U3JEQ9_FICAL_59894 are exactly identical! WARNING: Sequences tr_K7GEY1_K7GEY1_PELSI_13735 and tr_A0A091FN85_A0A091FN85_9AVES_55661 are exactly identical! WARNING: Sequences tr_K7GEY1_K7GEY1_PELSI_13735 and tr_A0A218UBM3_A0A218UBM3_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1RR33_F1RR33_PIG_9823 and tr_E1BPV4_E1BPV4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F1RR33_F1RR33_PIG_9823 and tr_A0A2I2UPV3_A0A2I2UPV3_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1LXK0_G1LXK0_AILME_9646 and tr_A0A2R9AU48_A0A2R9AU48_PANPA_9597 are exactly identical! WARNING: Sequences tr_U3K1F9_U3K1F9_FICAL_59894 and tr_A0A218UPC0_A0A218UPC0_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A091IYL6_A0A091IYL6_EGRGA_188379 and tr_A0A087RET1_A0A087RET1_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091IYL6_A0A091IYL6_EGRGA_188379 and tr_A0A091WPG8_A0A091WPG8_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091IYL6_A0A091IYL6_EGRGA_188379 and tr_A0A099ZCL4_A0A099ZCL4_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091IYL6_A0A091IYL6_EGRGA_188379 and tr_A0A091GAL1_A0A091GAL1_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091IYL6_A0A091IYL6_EGRGA_188379 and tr_A0A093GJM3_A0A093GJM3_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A2I0MES6_A0A2I0MES6_COLLI_8932 and tr_A0A3Q0GWE1_A0A3Q0GWE1_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0V1DEV1_A0A0V1DEV1_TRIBR_45882 and tr_A0A0V0V4Y0_A0A0V0V4Y0_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1DEV1_A0A0V1DEV1_TRIBR_45882 and tr_A0A0V1LD69_A0A0V1LD69_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1DEV1_A0A0V1DEV1_TRIBR_45882 and tr_A0A0V0TLX3_A0A0V0TLX3_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0ZU75_A0A0V0ZU75_9BILA_990121 and tr_A0A0V1PKS5_A0A0V1PKS5_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A1S3IHW8_A0A1S3IHW8_LINUN_7574 and tr_A0A1S3IHZ5_A0A1S3IHZ5_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3II85_A0A1S3II85_LINUN_7574 and tr_A0A1S3IJZ3_A0A1S3IJZ3_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1D1VF05_A0A1D1VF05_RAMVA_947166 and tr_A0A1D1VNW4_A0A1D1VNW4_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A226MVS6_A0A226MVS6_CALSU_9009 and tr_A0A226PSS6_A0A226PSS6_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0RIL2_A0A2D0RIL2_ICTPU_7998 and tr_A0A2D0RIL4_A0A2D0RIL4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SAA9_A0A2D0SAA9_ICTPU_7998 and tr_A0A2D0SAB0_A0A2D0SAB0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SAB4_A0A2D0SAB4_ICTPU_7998 and tr_A0A2D0SAB7_A0A2D0SAB7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SB32_A0A2D0SB32_ICTPU_7998 and tr_A0A2D0SB42_A0A2D0SB42_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SRD6_A0A2D0SRD6_ICTPU_7998 and tr_A0A2D0SRE6_A0A2D0SRE6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5L5X4_A0A2K5L5X4_CERAT_9531 and tr_A0A2K6DQE2_A0A2K6DQE2_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2Y9PJN4_A0A2Y9PJN4_DELLE_9749 and tr_A0A2Y9S6N9_A0A2Y9S6N9_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 73 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H4W6/4_raxmlng_ancestral/Q9H4W6.raxml.reduced.phy Alignment comprises 1 partitions and 596 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 596 Gaps: 26.97 % Invariant sites: 0.17 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H4W6/4_raxmlng_ancestral/Q9H4W6.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H4W6/3_mltree/Q9H4W6.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 149 / 11920 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -72413.364385 [00:00:00 -72413.364385] Initial branch length optimization [00:00:00 -71941.954497] Model parameter optimization (eps = 0.100000) [00:00:54] Tree #1, final logLikelihood: -71301.711960 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.296390,0.669996) (0.204550,1.443228) (0.328363,0.749295) (0.170697,1.524144) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H4W6/4_raxmlng_ancestral/Q9H4W6.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H4W6/4_raxmlng_ancestral/Q9H4W6.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H4W6/4_raxmlng_ancestral/Q9H4W6.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H4W6/4_raxmlng_ancestral/Q9H4W6.raxml.log Analysis started: 02-Jun-2021 18:36:19 / finished: 02-Jun-2021 18:37:17 Elapsed time: 57.594 seconds Consumed energy: 5.055 Wh