RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 06-Jul-2021 16:49:46 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H4Q4/2_msa/Q9H4Q4_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H4Q4/3_mltree/Q9H4Q4 --seed 2 --threads 4 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H4Q4/2_msa/Q9H4Q4_trimmed_msa.fasta [00:00:00] Loaded alignment with 999 taxa and 209 sites WARNING: Sequences tr_E1C6K0_E1C6K0_CHICK_9031 and tr_G1N1G5_G1N1G5_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1C6K0_E1C6K0_CHICK_9031 and tr_U3JFF3_U3JFF3_FICAL_59894 are exactly identical! WARNING: Sequences tr_E1C6K0_E1C6K0_CHICK_9031 and tr_A0A151MFL3_A0A151MFL3_ALLMI_8496 are exactly identical! WARNING: Sequences tr_E1C6K0_E1C6K0_CHICK_9031 and tr_A0A1U7RR30_A0A1U7RR30_ALLSI_38654 are exactly identical! WARNING: Sequences tr_E1C6K0_E1C6K0_CHICK_9031 and tr_A0A1V4J6C7_A0A1V4J6C7_PATFA_372326 are exactly identical! WARNING: Sequences tr_E1C6K0_E1C6K0_CHICK_9031 and tr_A0A218V159_A0A218V159_9PASE_299123 are exactly identical! WARNING: Sequences tr_E1C6K0_E1C6K0_CHICK_9031 and tr_A0A226NP02_A0A226NP02_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1C6K0_E1C6K0_CHICK_9031 and tr_A0A226P0G4_A0A226P0G4_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1NZV2_F1NZV2_CHICK_9031 and tr_A0A0Q3UU44_A0A0Q3UU44_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1NZV2_F1NZV2_CHICK_9031 and tr_A0A2I0M8T8_A0A2I0M8T8_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1NZV2_F1NZV2_CHICK_9031 and tr_A0A1V4KCS8_A0A1V4KCS8_PATFA_372326 are exactly identical! WARNING: Sequences sp_A2AJ77_PRD12_MOUSE_10090 and tr_H2QY20_H2QY20_PANTR_9598 are exactly identical! WARNING: Sequences sp_A2AJ77_PRD12_MOUSE_10090 and tr_D3ZEJ0_D3ZEJ0_RAT_10116 are exactly identical! WARNING: Sequences sp_A2AJ77_PRD12_MOUSE_10090 and sp_Q9H4Q4_PRD12_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YDN9_M3YDN9_MUSPF_9669 and tr_A0A2Y9KRY1_A0A2Y9KRY1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YNF8_M3YNF8_MUSPF_9669 and tr_F1PD75_F1PD75_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YNF8_M3YNF8_MUSPF_9669 and tr_G1MB38_G1MB38_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YNF8_M3YNF8_MUSPF_9669 and tr_M3WRI5_M3WRI5_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YNF8_M3YNF8_MUSPF_9669 and tr_A0A2Y9JM69_A0A2Y9JM69_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3HQT7_A0A2I3HQT7_NOMLE_61853 and tr_A0A2I2YMB8_A0A2I2YMB8_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HQT7_A0A2I3HQT7_NOMLE_61853 and tr_H2QG72_H2QG72_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HQT7_A0A2I3HQT7_NOMLE_61853 and sp_Q96NI8_ZN570_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HQT7_A0A2I3HQT7_NOMLE_61853 and tr_A0A1D5R3C7_A0A1D5R3C7_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3HQT7_A0A2I3HQT7_NOMLE_61853 and tr_G7PXE8_G7PXE8_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3HQT7_A0A2I3HQT7_NOMLE_61853 and tr_A0A0A0MVY5_A0A0A0MVY5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3HQT7_A0A2I3HQT7_NOMLE_61853 and tr_A0A0D9QVX8_A0A0D9QVX8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3HQT7_A0A2I3HQT7_NOMLE_61853 and tr_A0A2K5L6Z1_A0A2K5L6Z1_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3HQT7_A0A2I3HQT7_NOMLE_61853 and tr_A0A2K6DA83_A0A2K6DA83_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and tr_H2QRE3_H2QRE3_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and tr_F6QN37_F6QN37_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and tr_W5QC25_W5QC25_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and tr_I3M7W1_I3M7W1_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and sp_Q9NQX0_PRDM6_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and tr_G3U1W5_G3U1W5_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and tr_F7GRH6_F7GRH6_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and tr_F1RKP0_F1RKP0_PIG_9823 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and tr_G7P851_G7P851_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and sp_A6QPM3_PRDM6_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and tr_A0A2I3MF44_A0A2I3MF44_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and tr_A0A0D9RQ11_A0A0D9RQ11_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and tr_A0A3Q0DII4_A0A3Q0DII4_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and tr_A0A2K5LQI9_A0A2K5LQI9_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and tr_A0A2K5ZNF6_A0A2K5ZNF6_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and tr_A0A2R9CBF3_A0A2R9CBF3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and tr_A0A2U4BTQ5_A0A2U4BTQ5_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and tr_A0A2Y9PBU0_A0A2Y9PBU0_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and tr_A0A2Y9SU42_A0A2Y9SU42_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1RN36_G1RN36_NOMLE_61853 and tr_A0A384AMR2_A0A384AMR2_BALAS_310752 are exactly identical! WARNING: Sequences tr_G1RPQ6_G1RPQ6_NOMLE_61853 and tr_G5AT63_G5AT63_HETGA_10181 are exactly identical! WARNING: Sequences tr_G1RPQ6_G1RPQ6_NOMLE_61853 and tr_A0A2K5Z9L2_A0A2K5Z9L2_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RS40_G1RS40_NOMLE_61853 and tr_G3QHR5_G3QHR5_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RS40_G1RS40_NOMLE_61853 and tr_H2PJX9_H2PJX9_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RS40_G1RS40_NOMLE_61853 and sp_O75626_PRDM1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RS40_G1RS40_NOMLE_61853 and tr_A0A2R8ZUJ0_A0A2R8ZUJ0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R0U0_G3R0U0_GORGO_9595 and tr_H2QGJ4_H2QGJ4_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R6V8_G3R6V8_GORGO_9595 and tr_H2QWA1_H2QWA1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R6V8_G3R6V8_GORGO_9595 and sp_Q9GZV8_PRD14_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R6V8_G3R6V8_GORGO_9595 and tr_A0A2R8ZS07_A0A2R8ZS07_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1NLB4_G1NLB4_MELGA_9103 and tr_A0A226NJT3_A0A226NJT3_CALSU_9009 are exactly identical! WARNING: Sequences tr_G1NLB4_G1NLB4_MELGA_9103 and tr_A0A226PU05_A0A226PU05_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1Q2W7_F1Q2W7_CANLF_9615 and tr_I3M725_I3M725_ICTTR_43179 are exactly identical! WARNING: Sequences tr_F1Q2W7_F1Q2W7_CANLF_9615 and tr_G3SZ86_G3SZ86_LOXAF_9785 are exactly identical! WARNING: Sequences tr_F1Q2W7_F1Q2W7_CANLF_9615 and tr_F7I4S5_F7I4S5_CALJA_9483 are exactly identical! WARNING: Sequences tr_F1Q2W7_F1Q2W7_CANLF_9615 and tr_F1S0X7_F1S0X7_PIG_9823 are exactly identical! WARNING: Sequences tr_F1Q2W7_F1Q2W7_CANLF_9615 and tr_E1B9X9_E1B9X9_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F1Q2W7_F1Q2W7_CANLF_9615 and tr_A0A337SEE4_A0A337SEE4_FELCA_9685 are exactly identical! WARNING: Sequences tr_F1Q2W7_F1Q2W7_CANLF_9615 and tr_A0A096P0F9_A0A096P0F9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F1Q2W7_F1Q2W7_CANLF_9615 and tr_A0A0D9RQI6_A0A0D9RQI6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F1Q2W7_F1Q2W7_CANLF_9615 and tr_A0A1U7REI9_A0A1U7REI9_MESAU_10036 are exactly identical! WARNING: Sequences tr_F1Q2W7_F1Q2W7_CANLF_9615 and tr_A0A2K5L0P9_A0A2K5L0P9_CERAT_9531 are exactly identical! WARNING: Sequences tr_F1Q2W7_F1Q2W7_CANLF_9615 and tr_A0A2K6CVC9_A0A2K6CVC9_MACNE_9545 are exactly identical! WARNING: Sequences tr_F1Q2W7_F1Q2W7_CANLF_9615 and tr_A0A2Y9DK16_A0A2Y9DK16_TRIMA_127582 are exactly identical! WARNING: Sequences tr_F1Q2W7_F1Q2W7_CANLF_9615 and tr_A0A2Y9J523_A0A2Y9J523_ENHLU_391180 are exactly identical! WARNING: Sequences tr_H2QGJ5_H2QGJ5_PANTR_9598 and tr_A0A2R9AAP7_A0A2R9AAP7_PANPA_9597 are exactly identical! WARNING: Sequences tr_W5P5U6_W5P5U6_SHEEP_9940 and tr_G1M2F8_G1M2F8_AILME_9646 are exactly identical! WARNING: Sequences tr_W5P5U6_W5P5U6_SHEEP_9940 and tr_F1N7K0_F1N7K0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5P5U6_W5P5U6_SHEEP_9940 and tr_A0A2I2UC02_A0A2I2UC02_FELCA_9685 are exactly identical! WARNING: Sequences tr_W5P5U6_W5P5U6_SHEEP_9940 and tr_A0A384DMI3_A0A384DMI3_URSMA_29073 are exactly identical! WARNING: Sequences tr_W5PGY3_W5PGY3_SHEEP_9940 and sp_A0JNB1_ZN227_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A158NLE3_A0A158NLE3_ATTCE_12957 and tr_F4WW68_F4WW68_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NLE3_A0A158NLE3_ATTCE_12957 and tr_A0A151XCE5_A0A151XCE5_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NLE3_A0A158NLE3_ATTCE_12957 and tr_A0A195E6D1_A0A195E6D1_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NLE3_A0A158NLE3_ATTCE_12957 and tr_A0A195B2A1_A0A195B2A1_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NPF2_A0A158NPF2_ATTCE_12957 and tr_A0A195B9A9_A0A195B9A9_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NPF2_A0A158NPF2_ATTCE_12957 and tr_A0A195ETV9_A0A195ETV9_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NW59_A0A158NW59_ATTCE_12957 and tr_A0A195B8K0_A0A195B8K0_9HYME_520822 are exactly identical! WARNING: Sequences tr_A5ABV9_A5ABV9_ASPNC_425011 and tr_G3XXC3_G3XXC3_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A5ABV9_A5ABV9_ASPNC_425011 and tr_A0A319ANG7_A0A319ANG7_9EURO_1450533 are exactly identical! WARNING: Sequences tr_F7FD48_F7FD48_MACMU_9544 and tr_G7P449_G7P449_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7FD48_F7FD48_MACMU_9544 and tr_A0A096MQB7_A0A096MQB7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7FD48_F7FD48_MACMU_9544 and tr_A0A0D9RQH4_A0A0D9RQH4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7FD48_F7FD48_MACMU_9544 and tr_A0A2K5LCH9_A0A2K5LCH9_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7FD48_F7FD48_MACMU_9544 and tr_A0A2K6BZ73_A0A2K6BZ73_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7FD48_F7FD48_MACMU_9544 and tr_A0A2K5YYY1_A0A2K5YYY1_MANLE_9568 are exactly identical! WARNING: Sequences tr_G7XZ93_G7XZ93_ASPKW_1033177 and tr_A0A146G0Z4_A0A146G0Z4_9EURO_1069201 are exactly identical! WARNING: Sequences tr_E5SRG1_E5SRG1_TRISP_6334 and tr_A0A0V0ZNS0_A0A0V0ZNS0_9BILA_990121 are exactly identical! WARNING: Sequences tr_H0YS86_H0YS86_TAEGU_59729 and tr_A0A091EG93_A0A091EG93_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0YS86_H0YS86_TAEGU_59729 and tr_A0A093PUK8_A0A093PUK8_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0Z2N4_H0Z2N4_TAEGU_59729 and tr_A0A093PSR3_A0A093PSR3_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0Z2N4_H0Z2N4_TAEGU_59729 and tr_A0A091UPR0_A0A091UPR0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H0Z2N4_H0Z2N4_TAEGU_59729 and tr_A0A093JBE6_A0A093JBE6_STRCA_441894 are exactly identical! WARNING: Sequences tr_H0Z2N4_H0Z2N4_TAEGU_59729 and tr_A0A091V8C5_A0A091V8C5_OPIHO_30419 are exactly identical! WARNING: Sequences tr_H0Z2N4_H0Z2N4_TAEGU_59729 and tr_A0A099YZK0_A0A099YZK0_TINGU_94827 are exactly identical! WARNING: Sequences tr_H0Z2N4_H0Z2N4_TAEGU_59729 and tr_A0A091H882_A0A091H882_9AVES_55661 are exactly identical! WARNING: Sequences tr_H0Z2N4_H0Z2N4_TAEGU_59729 and tr_A0A0A0AP02_A0A0A0AP02_CHAVO_50402 are exactly identical! WARNING: Sequences tr_H0Z2N4_H0Z2N4_TAEGU_59729 and tr_A0A093IBH6_A0A093IBH6_DRYPU_118200 are exactly identical! WARNING: Sequences tr_H0Z2N4_H0Z2N4_TAEGU_59729 and tr_A0A091HRY8_A0A091HRY8_CALAN_9244 are exactly identical! WARNING: Sequences tr_F4X7S6_F4X7S6_ACREC_103372 and tr_A0A195D0J0_A0A195D0J0_9HYME_456900 are exactly identical! WARNING: Sequences tr_G1L3W0_G1L3W0_AILME_9646 and tr_M3WDV7_M3WDV7_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1L3W0_G1L3W0_AILME_9646 and tr_A0A2U3VRQ3_A0A2U3VRQ3_ODORO_9708 are exactly identical! WARNING: Sequences tr_G7PC03_G7PC03_MACFA_9541 and tr_A0A096N3I7_A0A096N3I7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7PC03_G7PC03_MACFA_9541 and tr_A0A2K5LE40_A0A2K5LE40_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7PC03_G7PC03_MACFA_9541 and tr_A0A2K5XVZ4_A0A2K5XVZ4_MANLE_9568 are exactly identical! WARNING: Sequences tr_U3JYJ6_U3JYJ6_FICAL_59894 and tr_A0A151M803_A0A151M803_ALLMI_8496 are exactly identical! WARNING: Sequences tr_U3JYJ6_U3JYJ6_FICAL_59894 and tr_A0A3Q0H3I8_A0A3Q0H3I8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_U3KAS5_U3KAS5_FICAL_59894 and tr_A0A218UYY4_A0A218UYY4_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A151MJV6_A0A151MJV6_ALLMI_8496 and tr_A0A1U7RT53_A0A1U7RT53_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0Q3TXH2_A0A0Q3TXH2_AMAAE_12930 and tr_A0A093GBT5_A0A093GBT5_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091F8R4_A0A091F8R4_CORBR_85066 and tr_A0A093S2Q8_A0A093S2Q8_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091F8R4_A0A091F8R4_CORBR_85066 and tr_A0A091USN6_A0A091USN6_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091F8R4_A0A091F8R4_CORBR_85066 and tr_A0A087RGY5_A0A087RGY5_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091F8R4_A0A091F8R4_CORBR_85066 and tr_A0A0A0ARL8_A0A0A0ARL8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091F8R4_A0A091F8R4_CORBR_85066 and tr_A0A093GB40_A0A093GB40_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091F8R4_A0A091F8R4_CORBR_85066 and tr_A0A091HV78_A0A091HV78_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091JR11_A0A091JR11_EGRGA_188379 and tr_A0A091UKA4_A0A091UKA4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JR11_A0A091JR11_EGRGA_188379 and tr_A0A087RBI4_A0A087RBI4_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JR11_A0A091JR11_EGRGA_188379 and tr_A0A093I2Y2_A0A093I2Y2_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091JR11_A0A091JR11_EGRGA_188379 and tr_A0A091GU63_A0A091GU63_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091JR11_A0A091JR11_EGRGA_188379 and tr_A0A0A0B4P0_A0A0A0B4P0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091JR11_A0A091JR11_EGRGA_188379 and tr_A0A091HVF6_A0A091HVF6_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A2I0MU68_A0A2I0MU68_COLLI_8932 and tr_A0A1V4JM29_A0A1V4JM29_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V1L3Y1_A0A0V1L3Y1_9BILA_6335 and tr_A0A0V1P672_A0A0V1P672_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1L3Y1_A0A0V1L3Y1_9BILA_6335 and tr_A0A0V0TRX8_A0A0V0TRX8_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A100IH60_A0A100IH60_ASPNG_5061 and tr_A0A1L9MSK1_A0A1L9MSK1_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A0A1S3QLC5_A0A1S3QLC5_SALSA_8030 and tr_A0A1S3QQ79_A0A1S3QQ79_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A2D0QVW8_A0A2D0QVW8_ICTPU_7998 and tr_A0A2D0QVX1_A0A2D0QVX1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QVW8_A0A2D0QVW8_ICTPU_7998 and tr_A0A2D0QVX3_A0A2D0QVX3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QVW8_A0A2D0QVW8_ICTPU_7998 and tr_A0A2D0QW88_A0A2D0QW88_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QVW8_A0A2D0QVW8_ICTPU_7998 and tr_A0A2D0QW91_A0A2D0QW91_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QVW8_A0A2D0QVW8_ICTPU_7998 and tr_A0A2D0QXU5_A0A2D0QXU5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QVW8_A0A2D0QVW8_ICTPU_7998 and tr_A0A2D0QYI5_A0A2D0QYI5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U3V5X1_A0A2U3V5X1_TURTR_9739 and tr_A0A2U4BTY7_A0A2U4BTY7_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2U3V5X1_A0A2U3V5X1_TURTR_9739 and tr_A0A2Y9P7Z3_A0A2Y9P7Z3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3WIZ0_A0A2U3WIZ0_ODORO_9708 and tr_A0A2U3XK87_A0A2U3XK87_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3ZPP2_A0A2U3ZPP2_ODORO_9708 and tr_A0A2Y9N1C4_A0A2Y9N1C4_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2Y9F9F1_A0A2Y9F9F1_PHYCD_9755 and tr_A0A383YVD0_A0A383YVD0_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 146 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H4Q4/3_mltree/Q9H4Q4.raxml.reduced.phy Alignment comprises 1 partitions and 209 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 209 / 209 Gaps: 19.62 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H4Q4/3_mltree/Q9H4Q4.raxml.rba Parallelization scheme autoconfig: 4 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 999 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 209 / 16720 [00:00:00] Data distribution: max. searches per worker: 5 Starting ML tree search with 20 distinct starting trees [00:00:00 -352460.188960] Initial branch length optimization [00:00:06 -302200.879012] Model parameter optimization (eps = 10.000000) [00:00:49 -300205.756753] AUTODETECT spr round 1 (radius: 5) [00:04:00 -208630.345562] AUTODETECT spr round 2 (radius: 10) [00:07:20 -160024.900607] AUTODETECT spr round 3 (radius: 15) [00:11:01 -138777.405438] AUTODETECT spr round 4 (radius: 20) [00:15:12 -128367.713400] AUTODETECT spr round 5 (radius: 25) [00:20:27 -126309.973329] SPR radius for FAST iterations: 25 (autodetect) [00:20:27 -126309.973329] Model parameter optimization (eps = 3.000000) [00:20:55 -126287.150506] FAST spr round 1 (radius: 25) [00:26:06 -116093.204875] FAST spr round 2 (radius: 25) [00:30:08 -114916.494973] FAST spr round 3 (radius: 25) [00:33:28 -114843.711191] FAST spr round 4 (radius: 25) [00:36:13 -114820.228453] FAST spr round 5 (radius: 25) [00:38:37 -114815.352002] FAST spr round 6 (radius: 25) [00:40:51 -114814.474796] FAST spr round 7 (radius: 25) [00:43:04 -114814.474218] Model parameter optimization (eps = 1.000000) [00:43:30 -114803.757871] SLOW spr round 1 (radius: 5) [00:46:33 -114780.306264] SLOW spr round 2 (radius: 5) [00:49:33 -114772.465642] SLOW spr round 3 (radius: 5) [00:52:19 -114772.186378] SLOW spr round 4 (radius: 5) [00:55:03 -114771.924778] SLOW spr round 5 (radius: 5) [00:57:56 -114770.133597] SLOW spr round 6 (radius: 5) [01:00:48 -114770.130612] SLOW spr round 7 (radius: 10) [01:04:01 -114756.489701] SLOW spr round 8 (radius: 5) [01:07:34 -114751.011583] SLOW spr round 9 (radius: 5) [01:10:44 -114750.926412] SLOW spr round 10 (radius: 10) [01:13:53 -114750.926284] SLOW spr round 11 (radius: 15) [01:19:25 -114750.500200] SLOW spr round 12 (radius: 5) [01:22:55 -114750.500174] SLOW spr round 13 (radius: 10) [01:26:29 -114750.500171] SLOW spr round 14 (radius: 15) [01:31:46 -114750.500171] SLOW spr round 15 (radius: 20) [01:39:12 -114747.349531] SLOW spr round 16 (radius: 5) [01:42:49 -114747.150228] SLOW spr round 17 (radius: 5) [01:46:05 -114746.962966] SLOW spr round 18 (radius: 5) [01:49:06 -114746.962206] SLOW spr round 19 (radius: 10) [01:52:12 -114745.739068] SLOW spr round 20 (radius: 5) [01:55:40 -114745.588531] SLOW spr round 21 (radius: 5) [01:58:47 -114745.588269] SLOW spr round 22 (radius: 10) [02:00:05] [worker #3] ML tree search #4, logLikelihood: -114783.361884 [02:01:55 -114745.048104] SLOW spr round 23 (radius: 5) [02:05:19 -114745.047411] SLOW spr round 24 (radius: 10) [02:08:43 -114745.047383] SLOW spr round 25 (radius: 15) [02:14:03 -114745.047381] SLOW spr round 26 (radius: 20) [02:21:25 -114745.047381] SLOW spr round 27 (radius: 25) [02:29:22 -114745.047381] Model parameter optimization (eps = 0.100000) [02:29:28] [worker #0] ML tree search #1, logLikelihood: -114745.034055 [02:29:28 -352893.090908] Initial branch length optimization [02:29:34 -302232.748361] Model parameter optimization (eps = 10.000000) [02:30:21 -300235.083697] AUTODETECT spr round 1 (radius: 5) [02:33:31 -208391.206885] AUTODETECT spr round 2 (radius: 10) [02:36:55 -162201.710586] AUTODETECT spr round 3 (radius: 15) [02:40:35 -141922.788095] AUTODETECT spr round 4 (radius: 20) [02:44:47 -130257.171083] AUTODETECT spr round 5 (radius: 25) [02:49:42 -126727.813536] SPR radius for FAST iterations: 25 (autodetect) [02:49:42 -126727.813536] Model parameter optimization (eps = 3.000000) [02:50:17 -126708.435561] FAST spr round 1 (radius: 25) [02:55:13] [worker #2] ML tree search #3, logLikelihood: -114678.075730 [02:55:23 -115734.090758] FAST spr round 2 (radius: 25) [02:59:17 -115017.549919] FAST spr round 3 (radius: 25) [03:01:34] [worker #1] ML tree search #2, logLikelihood: -114716.157234 [03:02:35 -114907.021439] FAST spr round 4 (radius: 25) [03:05:34 -114888.268396] FAST spr round 5 (radius: 25) [03:08:13 -114885.770805] FAST spr round 6 (radius: 25) [03:10:42 -114885.769832] Model parameter optimization (eps = 1.000000) [03:11:03 -114875.787992] SLOW spr round 1 (radius: 5) [03:14:10 -114848.974247] SLOW spr round 2 (radius: 5) [03:17:12 -114848.883169] SLOW spr round 3 (radius: 10) [03:20:19 -114842.012737] SLOW spr round 4 (radius: 5) [03:23:57 -114839.335471] SLOW spr round 5 (radius: 5) [03:27:16 -114837.865735] SLOW spr round 6 (radius: 5) [03:30:20 -114837.545711] SLOW spr round 7 (radius: 5) [03:33:17 -114837.417236] SLOW spr round 8 (radius: 5) [03:36:12 -114837.417230] SLOW spr round 9 (radius: 10) [03:39:13 -114837.417230] SLOW spr round 10 (radius: 15) [03:45:11 -114833.258094] SLOW spr round 11 (radius: 5) [03:48:52 -114830.680853] SLOW spr round 12 (radius: 5) [03:52:08 -114830.680709] SLOW spr round 13 (radius: 10) [03:55:28 -114828.546191] SLOW spr round 14 (radius: 5) [03:59:04 -114826.385936] SLOW spr round 15 (radius: 5) [04:02:15 -114826.384774] SLOW spr round 16 (radius: 10) [04:05:30 -114826.384707] SLOW spr round 17 (radius: 15) [04:11:23 -114826.384702] SLOW spr round 18 (radius: 20) [04:16:21] [worker #3] ML tree search #8, logLikelihood: -114709.219819 [04:19:25 -114825.574785] SLOW spr round 19 (radius: 5) [04:23:05 -114825.574457] SLOW spr round 20 (radius: 10) [04:26:59 -114825.574442] SLOW spr round 21 (radius: 15) [04:32:34 -114825.574442] SLOW spr round 22 (radius: 20) [04:40:34 -114825.574441] SLOW spr round 23 (radius: 25) [04:49:08] [worker #2] ML tree search #7, logLikelihood: -114761.892531 [04:49:09 -114825.574368] Model parameter optimization (eps = 0.100000) [04:49:19] [worker #0] ML tree search #5, logLikelihood: -114825.412900 [04:49:19 -353878.068944] Initial branch length optimization [04:49:27 -300845.112708] Model parameter optimization (eps = 10.000000) [04:50:40 -299319.379991] AUTODETECT spr round 1 (radius: 5) [04:53:37 -214884.283121] AUTODETECT spr round 2 (radius: 10) [04:56:51 -172036.049746] AUTODETECT spr round 3 (radius: 15) [05:00:24 -139147.749177] AUTODETECT spr round 4 (radius: 20) [05:03:59 -131124.463871] AUTODETECT spr round 5 (radius: 25) [05:08:55 -127067.001101] SPR radius for FAST iterations: 25 (autodetect) [05:08:55 -127067.001101] Model parameter optimization (eps = 3.000000) [05:09:22 -127015.010538] FAST spr round 1 (radius: 25) [05:14:24 -115565.230979] FAST spr round 2 (radius: 25) [05:17:12] [worker #1] ML tree search #6, logLikelihood: -114720.127565 [05:18:16 -114942.338738] FAST spr round 3 (radius: 25) [05:21:31 -114875.765401] FAST spr round 4 (radius: 25) [05:24:15 -114851.394888] FAST spr round 5 (radius: 25) [05:26:41 -114847.492642] FAST spr round 6 (radius: 25) [05:29:03 -114837.543537] FAST spr round 7 (radius: 25) [05:31:17 -114834.521646] FAST spr round 8 (radius: 25) [05:33:26 -114834.521566] Model parameter optimization (eps = 1.000000) [05:33:50 -114829.686507] SLOW spr round 1 (radius: 5) [05:36:41 -114807.906497] SLOW spr round 2 (radius: 5) [05:39:27 -114801.619283] SLOW spr round 3 (radius: 5) [05:42:09 -114801.489856] SLOW spr round 4 (radius: 5) [05:44:49 -114801.489511] SLOW spr round 5 (radius: 10) [05:47:40 -114790.532516] SLOW spr round 6 (radius: 5) [05:51:01 -114781.577745] SLOW spr round 7 (radius: 5) [05:54:02 -114779.062056] SLOW spr round 8 (radius: 5) [05:56:57 -114777.269837] SLOW spr round 9 (radius: 5) [05:59:43 -114777.269151] SLOW spr round 10 (radius: 10) [06:02:38 -114770.685328] SLOW spr round 11 (radius: 5) [06:05:56 -114768.795599] SLOW spr round 12 (radius: 5) [06:08:54 -114768.795483] SLOW spr round 13 (radius: 10) [06:11:53 -114768.795481] SLOW spr round 14 (radius: 15) [06:17:27 -114767.842138] SLOW spr round 15 (radius: 5) [06:17:57] [worker #3] ML tree search #12, logLikelihood: -114707.684081 [06:20:48 -114766.375428] SLOW spr round 16 (radius: 5) [06:23:51 -114764.454601] SLOW spr round 17 (radius: 5) [06:26:39 -114764.453357] SLOW spr round 18 (radius: 10) [06:29:32 -114764.453329] SLOW spr round 19 (radius: 15) [06:35:14 -114764.453328] SLOW spr round 20 (radius: 20) [06:42:20 -114764.453219] SLOW spr round 21 (radius: 25) [06:50:04 -114764.453219] Model parameter optimization (eps = 0.100000) [06:50:11] [worker #0] ML tree search #9, logLikelihood: -114764.400036 [06:50:11 -352701.670361] Initial branch length optimization [06:50:16 -301947.883291] Model parameter optimization (eps = 10.000000) [06:50:58 -299956.811570] AUTODETECT spr round 1 (radius: 5) [06:54:01 -213765.151866] AUTODETECT spr round 2 (radius: 10) [06:57:16 -166584.895872] AUTODETECT spr round 3 (radius: 15) [07:00:52 -145794.912163] AUTODETECT spr round 4 (radius: 20) [07:04:39 -135029.611184] AUTODETECT spr round 5 (radius: 25) [07:08:54 -128949.482227] SPR radius for FAST iterations: 25 (autodetect) [07:08:54 -128949.482227] Model parameter optimization (eps = 3.000000) [07:09:20 -128914.514730] FAST spr round 1 (radius: 25) [07:14:39 -116026.311093] FAST spr round 2 (radius: 25) [07:18:28 -114964.909250] FAST spr round 3 (radius: 25) [07:21:42 -114837.345308] FAST spr round 4 (radius: 25) [07:24:22 -114797.025700] FAST spr round 5 (radius: 25) [07:26:51 -114783.494796] FAST spr round 6 (radius: 25) [07:28:22] [worker #1] ML tree search #10, logLikelihood: -114739.914316 [07:29:12 -114770.925166] FAST spr round 7 (radius: 25) [07:31:23 -114769.327952] FAST spr round 8 (radius: 25) [07:33:31 -114769.327883] Model parameter optimization (eps = 1.000000) [07:33:47 -114765.000906] SLOW spr round 1 (radius: 5) [07:36:39 -114736.340897] SLOW spr round 2 (radius: 5) [07:39:26 -114733.121400] SLOW spr round 3 (radius: 5) [07:42:07 -114733.046941] SLOW spr round 4 (radius: 10) [07:45:01 -114714.186783] SLOW spr round 5 (radius: 5) [07:47:46] [worker #2] ML tree search #11, logLikelihood: -114721.199433 [07:48:20 -114707.915707] SLOW spr round 6 (radius: 5) [07:51:15 -114707.911913] SLOW spr round 7 (radius: 10) [07:54:17 -114705.891488] SLOW spr round 8 (radius: 5) [07:57:30 -114705.040760] SLOW spr round 9 (radius: 5) [08:00:24 -114705.040464] SLOW spr round 10 (radius: 10) [08:03:22 -114705.040453] SLOW spr round 11 (radius: 15) [08:09:01 -114703.054850] SLOW spr round 12 (radius: 5) [08:12:27 -114702.901229] SLOW spr round 13 (radius: 5) [08:15:37 -114702.901043] SLOW spr round 14 (radius: 10) [08:18:50 -114702.901025] SLOW spr round 15 (radius: 15) [08:24:44 -114702.901023] SLOW spr round 16 (radius: 20) [08:32:30 -114701.338307] SLOW spr round 17 (radius: 5) [08:35:45 -114701.338219] SLOW spr round 18 (radius: 10) [08:38:02] [worker #3] ML tree search #16, logLikelihood: -114745.819167 [08:39:14 -114701.338216] SLOW spr round 19 (radius: 15) [08:44:25 -114701.338216] SLOW spr round 20 (radius: 20) [08:51:43 -114701.338216] SLOW spr round 21 (radius: 25) [08:59:12 -114701.338216] Model parameter optimization (eps = 0.100000) [08:59:24] [worker #0] ML tree search #13, logLikelihood: -114701.212117 [08:59:24 -351575.202553] Initial branch length optimization [08:59:29 -302844.364702] Model parameter optimization (eps = 10.000000) [09:00:12 -300705.509751] AUTODETECT spr round 1 (radius: 5) [09:02:49 -208532.290398] AUTODETECT spr round 2 (radius: 10) [09:05:39 -165900.661788] AUTODETECT spr round 3 (radius: 15) [09:08:40 -142535.576389] AUTODETECT spr round 4 (radius: 20) [09:12:14 -129853.668717] AUTODETECT spr round 5 (radius: 25) [09:16:10 -126728.027978] SPR radius for FAST iterations: 25 (autodetect) [09:16:10 -126728.027978] Model parameter optimization (eps = 3.000000) [09:16:32 -126701.782804] FAST spr round 1 (radius: 25) [09:20:41 -115856.656622] FAST spr round 2 (radius: 25) [09:23:47 -115159.761891] FAST spr round 3 (radius: 25) [09:26:23 -115065.485940] FAST spr round 4 (radius: 25) [09:28:42 -115057.397636] FAST spr round 5 (radius: 25) [09:30:47 -115054.674723] FAST spr round 6 (radius: 25) [09:32:45 -115053.940496] FAST spr round 7 (radius: 25) [09:33:12] [worker #1] ML tree search #14, logLikelihood: -114752.825721 [09:34:38 -115053.939406] Model parameter optimization (eps = 1.000000) [09:34:58 -115044.565990] SLOW spr round 1 (radius: 5) [09:37:24 -115001.702132] SLOW spr round 2 (radius: 5) [09:39:48 -114994.261553] SLOW spr round 3 (radius: 5) [09:42:13 -114993.713643] SLOW spr round 4 (radius: 5) [09:44:32 -114993.712577] SLOW spr round 5 (radius: 10) [09:47:00 -114985.966318] SLOW spr round 6 (radius: 5) [09:49:53 -114983.667126] SLOW spr round 7 (radius: 5) [09:50:39] [worker #2] ML tree search #15, logLikelihood: -114730.503396 [09:52:28 -114981.106394] SLOW spr round 8 (radius: 5) [09:54:59 -114980.919790] SLOW spr round 9 (radius: 5) [09:57:21 -114980.918893] SLOW spr round 10 (radius: 10) [09:59:47 -114980.918789] SLOW spr round 11 (radius: 15) [10:04:25 -114980.918775] SLOW spr round 12 (radius: 20) [10:10:10 -114980.918772] SLOW spr round 13 (radius: 25) [10:16:28 -114980.918698] Model parameter optimization (eps = 0.100000) [10:16:34] [worker #0] ML tree search #17, logLikelihood: -114980.912276 [10:27:08] [worker #3] ML tree search #20, logLikelihood: -114717.274682 [11:54:51] [worker #2] ML tree search #19, logLikelihood: -114753.520833 [11:59:50] [worker #1] ML tree search #18, logLikelihood: -114705.252535 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.162327,0.352297) (0.069607,0.503523) (0.490791,0.956004) (0.277275,1.581699) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -114678.075730 AIC score: 233358.151459 / AICc score: 8245362.151459 / BIC score: 240046.162297 Free parameters (model + branch lengths): 2001 WARNING: Number of free parameters (K=2001) is larger than alignment size (n=209). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H4Q4/3_mltree/Q9H4Q4.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H4Q4/3_mltree/Q9H4Q4.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H4Q4/3_mltree/Q9H4Q4.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H4Q4/3_mltree/Q9H4Q4.raxml.log Analysis started: 06-Jul-2021 16:49:46 / finished: 07-Jul-2021 04:49:38 Elapsed time: 43191.083 seconds Consumed energy: 2723.306 Wh (= 14 km in an electric car, or 68 km with an e-scooter!)