RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM

RAxML-NG was called at 03-Jul-2021 01:55:16 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H165/2_msa/Q9H165_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H165/3_mltree/Q9H165 --seed 2 --threads 2 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H165/2_msa/Q9H165_trimmed_msa.fasta
[00:00:00] Loaded alignment with 994 taxa and 119 sites

WARNING: Sequences tr_B4R5Y4_B4R5Y4_DROSI_7240 and tr_A8JV11_A8JV11_DROME_7227 are exactly identical!
WARNING: Sequences tr_B4R5Y4_B4R5Y4_DROSI_7240 and tr_A0A0R3P1C8_A0A0R3P1C8_DROPS_46245 are exactly identical!
WARNING: Sequences tr_B4R5Y4_B4R5Y4_DROSI_7240 and tr_B4N1X2_B4N1X2_DROWI_7260 are exactly identical!
WARNING: Sequences tr_B4R5Y4_B4R5Y4_DROSI_7240 and tr_A0A1W4VIH9_A0A1W4VIH9_DROFC_30025 are exactly identical!
WARNING: Sequences tr_A0A2R8Q8A6_A0A2R8Q8A6_DANRE_7955 and tr_A0A3B5QB63_A0A3B5QB63_XIPMA_8083 are exactly identical!
WARNING: Sequences tr_A0A2R8Q8A6_A0A2R8Q8A6_DANRE_7955 and tr_G3PIC6_G3PIC6_GASAC_69293 are exactly identical!
WARNING: Sequences tr_A0A2R8Q8A6_A0A2R8Q8A6_DANRE_7955 and tr_A0A096LQP3_A0A096LQP3_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A2R8Q8A6_A0A2R8Q8A6_DANRE_7955 and tr_A0A1S3RCV0_A0A1S3RCV0_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A2R8Q8A6_A0A2R8Q8A6_DANRE_7955 and tr_A0A2I4BHU4_A0A2I4BHU4_9TELE_52670 are exactly identical!
WARNING: Sequences tr_A0A2R8Q8A6_A0A2R8Q8A6_DANRE_7955 and tr_A0A060YU63_A0A060YU63_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and sp_P14404_MECOM_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_M3Z064_M3Z064_MUSPF_9669 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A2I3H3C3_A0A2I3H3C3_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_G1PT22_G1PT22_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_G3RBC7_G3RBC7_GORGO_9595 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A2J8TI97_A0A2J8TI97_PONAB_9601 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_G1ND44_G1ND44_MELGA_9103 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_G1SYR3_G1SYR3_RABIT_9986 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_F1P809_F1P809_CANLF_9615 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A2I3RS65_A0A2I3RS65_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_F6WGE3_F6WGE3_HORSE_9796 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_W5NS00_W5NS00_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_D3ZM26_D3ZM26_RAT_10116 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A287DDW7_A0A287DDW7_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_H0X7S6_H0X7S6_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A286XYA7_A0A286XYA7_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and sp_Q03112_MECOM_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_F6VYT2_F6VYT2_MACMU_9544 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_G3T7K3_G3T7K3_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_H0ZL91_H0ZL91_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_F6SYP4_F6SYP4_CALJA_9483 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_G7NZG7_G7NZG7_MACFA_9541 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_E1BMZ2_E1BMZ2_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_L5KS15_L5KS15_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A337SBC4_A0A337SBC4_FELCA_9685 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_U3K1V6_U3K1V6_FICAL_59894 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A2I3LD64_A0A2I3LD64_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A0D9RJD2_A0A0D9RJD2_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A151NBA4_A0A151NBA4_ALLMI_8496 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A0Q3TDT8_A0A0Q3TDT8_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A091ECA0_A0A091ECA0_CORBR_85066 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A091JPI8_A0A091JPI8_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A093QQ20_A0A093QQ20_9PASS_328815 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A091UNN7_A0A091UNN7_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A087R4I3_A0A087R4I3_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A093HDF1_A0A093HDF1_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A091XPW0_A0A091XPW0_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A099ZG92_A0A099ZG92_TINGU_94827 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A091FJM9_A0A091FJM9_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A0A0AEA3_A0A0A0AEA3_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A093GHS9_A0A093GHS9_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A091I1A1_A0A091I1A1_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A1S2ZQK1_A0A1S2ZQK1_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A3Q0EFW9_A0A3Q0EFW9_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A3Q0G2Z8_A0A3Q0G2Z8_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A3Q0CPG2_A0A3Q0CPG2_MESAU_10036 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A1V4KP31_A0A1V4KP31_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A218V4B2_A0A218V4B2_9PASE_299123 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A2K5MUN9_A0A2K5MUN9_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A2K6BXY8_A0A2K6BXY8_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A2K5ZG20_A0A2K5ZG20_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A2R8ZK20_A0A2R8ZK20_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A2U4C945_A0A2U4C945_TURTR_9739 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A2U3ZPP2_A0A2U3ZPP2_ODORO_9708 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A2U3Z0C3_A0A2U3Z0C3_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A2Y9JIR3_A0A2Y9JIR3_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A2Y9N1C4_A0A2Y9N1C4_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A2Y9EG72_A0A2Y9EG72_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A1D5P950_A0A1D5P950_CHICK_9031 and tr_A0A384BD34_A0A384BD34_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A0A1D5PB87_A0A1D5PB87_CHICK_9031 and tr_H0YX76_H0YX76_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_A0A1D5PB87_A0A1D5PB87_CHICK_9031 and tr_U3K4P4_U3K4P4_FICAL_59894 are exactly identical!
WARNING: Sequences tr_A0A1D5PB87_A0A1D5PB87_CHICK_9031 and tr_U3IE16_U3IE16_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_A0A1D5PB87_A0A1D5PB87_CHICK_9031 and tr_A0A151N3L3_A0A151N3L3_ALLMI_8496 are exactly identical!
WARNING: Sequences tr_A0A1D5PB87_A0A1D5PB87_CHICK_9031 and tr_A0A0Q3LZ56_A0A0Q3LZ56_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_A0A1D5PB87_A0A1D5PB87_CHICK_9031 and tr_A0A091F8E2_A0A091F8E2_CORBR_85066 are exactly identical!
WARNING: Sequences tr_A0A1D5PB87_A0A1D5PB87_CHICK_9031 and tr_A0A091K4V1_A0A091K4V1_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_A0A1D5PB87_A0A1D5PB87_CHICK_9031 and tr_A0A091VVP5_A0A091VVP5_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A1D5PB87_A0A1D5PB87_CHICK_9031 and tr_A0A087QS65_A0A087QS65_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A1D5PB87_A0A1D5PB87_CHICK_9031 and tr_A0A093HAC4_A0A093HAC4_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A0A1D5PB87_A0A1D5PB87_CHICK_9031 and tr_A0A099Z9W1_A0A099Z9W1_TINGU_94827 are exactly identical!
WARNING: Sequences tr_A0A1D5PB87_A0A1D5PB87_CHICK_9031 and tr_A0A091G402_A0A091G402_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A1D5PB87_A0A1D5PB87_CHICK_9031 and tr_A0A0A0AV92_A0A0A0AV92_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A1D5PB87_A0A1D5PB87_CHICK_9031 and tr_A0A093G338_A0A093G338_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_A0A1D5PB87_A0A1D5PB87_CHICK_9031 and tr_A0A091ILK0_A0A091ILK0_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A1D5PB87_A0A1D5PB87_CHICK_9031 and tr_A0A1L8FGI4_A0A1L8FGI4_XENLA_8355 are exactly identical!
WARNING: Sequences tr_A0A1D5PB87_A0A1D5PB87_CHICK_9031 and tr_A0A3Q0H8E9_A0A3Q0H8E9_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A1D5PB87_A0A1D5PB87_CHICK_9031 and tr_A0A1V4KQH1_A0A1V4KQH1_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and sp_Q99PV8_BC11B_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_G3HIW2_G3HIW2_CRIGR_10029 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_G3RS97_G3RS97_GORGO_9595 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_H2NM81_H2NM81_PONAB_9601 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_G1KN85_G1KN85_ANOCA_28377 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_E2RCL6_E2RCL6_CANLF_9615 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_H2R971_H2R971_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_F7A9E4_F7A9E4_MONDO_13616 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_D4A0W4_D4A0W4_RAT_10116 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_I3NEW4_I3NEW4_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_H0XUR7_H0XUR7_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A286XUZ2_A0A286XUZ2_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and sp_Q9C0K0_BC11B_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_F7DJ15_F7DJ15_MACMU_9544 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_K7G2T0_K7G2T0_PELSI_13735 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_G3T3D8_G3T3D8_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_G3W5S3_G3W5S3_SARHA_9305 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_H0ZR40_H0ZR40_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A2R8MB78_A0A2R8MB78_CALJA_9483 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_F1SAQ5_F1SAQ5_PIG_9823 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_E1BD25_E1BD25_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A337S1V6_A0A337S1V6_FELCA_9685 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_U3IF49_U3IF49_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A9X1C9_A9X1C9_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A0D9RDL6_A0A0D9RDL6_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A0Q3TAS8_A0A0Q3TAS8_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A091JCE8_A0A091JCE8_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A093SUJ0_A0A093SUJ0_9PASS_328815 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A091WCU0_A0A091WCU0_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A087R565_A0A087R565_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A093HRD9_A0A093HRD9_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A091XH40_A0A091XH40_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A099ZHS5_A0A099ZHS5_TINGU_94827 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A091G193_A0A091G193_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A0A0AVT9_A0A0A0AVT9_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A2I0MP20_A0A2I0MP20_COLLI_8932 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A093I5I9_A0A093I5I9_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A091HHG2_A0A091HHG2_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A3Q0GIV8_A0A3Q0GIV8_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A1U7QAZ5_A0A1U7QAZ5_MESAU_10036 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A1V4KAW2_A0A1V4KAW2_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A218V2V4_A0A218V2V4_9PASE_299123 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A226N9Y8_A0A226N9Y8_CALSU_9009 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A226PGZ6_A0A226PGZ6_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A2K5NJ79_A0A2K5NJ79_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A2K6D8Y7_A0A2K6D8Y7_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A2U4AFQ0_A0A2U4AFQ0_TURTR_9739 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A2U3VKY0_A0A2U3VKY0_ODORO_9708 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A2U3YII2_A0A2U3YII2_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A2Y9JJC0_A0A2Y9JJC0_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A2Y9NFU8_A0A2Y9NFU8_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A1D5PHN2_A0A1D5PHN2_CHICK_9031 and tr_A0A2Y9T8X1_A0A2Y9T8X1_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A2I3HC24_A0A2I3HC24_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_G3H4I9_G3H4I9_CRIGR_10029 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A2I2YVK1_A0A2I2YVK1_GORGO_9595 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_G1MSM9_G1MSM9_MELGA_9103 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_G1KQQ7_G1KQQ7_ANOCA_28377 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_G1SEY7_G1SEY7_RABIT_9986 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_H2R1K0_H2R1K0_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_D3ZSY3_D3ZSY3_RAT_10116 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A287DAI9_A0A287DAI9_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A286XJ81_A0A286XJ81_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and sp_Q9H165_BC11A_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_G5C201_G5C201_HETGA_10181 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_K7G4Q1_K7G4Q1_PELSI_13735 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_G3SRP5_G3SRP5_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_G3WT62_G3WT62_SARHA_9305 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_H0Z8S9_H0Z8S9_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_F6UA33_F6UA33_CALJA_9483 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A287BS71_A0A287BS71_PIG_9823 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_G1MBG1_G1MBG1_AILME_9646 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_G7PM95_G7PM95_MACFA_9541 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_L5KT87_L5KT87_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_M3X6Q9_M3X6Q9_FELCA_9685 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_U3K9A6_U3K9A6_FICAL_59894 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_U3IJD9_U3IJD9_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A2I3MHL9_A0A2I3MHL9_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A0Q3P9W9_A0A0Q3P9W9_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A091F9H1_A0A091F9H1_CORBR_85066 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A091K3B1_A0A091K3B1_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A091UQZ7_A0A091UQZ7_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A087R877_A0A087R877_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A091WPB4_A0A091WPB4_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A099ZRM5_A0A099ZRM5_TINGU_94827 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A091FQY8_A0A091FQY8_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A2I0M9G4_A0A2I0M9G4_COLLI_8932 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A093GZY2_A0A093GZY2_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A1S3ASE6_A0A1S3ASE6_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A1S3FPK0_A0A1S3FPK0_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A3Q0DRU3_A0A3Q0DRU3_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A1U8DJA7_A0A1U8DJA7_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A1U7QM14_A0A1U7QM14_MESAU_10036 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A218USX5_A0A218USX5_9PASE_299123 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A2K5MF25_A0A2K5MF25_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A2K6DEI1_A0A2K6DEI1_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A2K5Z672_A0A2K5Z672_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A2R9B3T1_A0A2R9B3T1_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A2U4BYC4_A0A2U4BYC4_TURTR_9739 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A2U3VRA1_A0A2U3VRA1_ODORO_9708 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A2U3YUU4_A0A2U3YUU4_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A2Y9D8I6_A0A2Y9D8I6_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A2Y9JQG1_A0A2Y9JQG1_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A2Y9QBL9_A0A2Y9QBL9_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A2Y9FLL6_A0A2Y9FLL6_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A1D5PMI2_A0A1D5PMI2_CHICK_9031 and tr_A0A384AQV0_A0A384AQV0_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A5HUJ3_A5HUJ3_CHICK_9031 and tr_G3UQW1_G3UQW1_MELGA_9103 are exactly identical!
WARNING: Sequences tr_F1NTH5_F1NTH5_CHICK_9031 and tr_A0A226MFW8_A0A226MFW8_CALSU_9009 are exactly identical!
WARNING: Sequences tr_F1NTH5_F1NTH5_CHICK_9031 and tr_A0A226PYI9_A0A226PYI9_COLVI_9014 are exactly identical!
WARNING: Sequences tr_F1NVH0_F1NVH0_CHICK_9031 and tr_U3J4Y9_U3J4Y9_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_F1NVH0_F1NVH0_CHICK_9031 and tr_A0A2I0MVS7_A0A2I0MVS7_COLLI_8932 are exactly identical!
WARNING: Sequences tr_F1NVH0_F1NVH0_CHICK_9031 and tr_A0A1V4J8V1_A0A1V4J8V1_PATFA_372326 are exactly identical!
WARNING: Sequences tr_Q5F394_Q5F394_CHICK_9031 and tr_F7FQ77_F7FQ77_ORNAN_9258 are exactly identical!
WARNING: Sequences tr_Q5ZI79_Q5ZI79_CHICK_9031 and tr_G1N2A3_G1N2A3_MELGA_9103 are exactly identical!
WARNING: Sequences tr_Q5ZI79_Q5ZI79_CHICK_9031 and tr_R0LNM6_R0LNM6_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_Q5ZI79_Q5ZI79_CHICK_9031 and tr_A0A0Q3MCB8_A0A0Q3MCB8_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_Q5ZI79_Q5ZI79_CHICK_9031 and tr_A0A091JAL4_A0A091JAL4_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_Q5ZI79_Q5ZI79_CHICK_9031 and tr_A0A093QKC2_A0A093QKC2_9PASS_328815 are exactly identical!
WARNING: Sequences tr_Q5ZI79_Q5ZI79_CHICK_9031 and tr_A0A091UP63_A0A091UP63_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_Q5ZI79_Q5ZI79_CHICK_9031 and tr_A0A087R0T7_A0A087R0T7_APTFO_9233 are exactly identical!
WARNING: Sequences tr_Q5ZI79_Q5ZI79_CHICK_9031 and tr_A0A093I468_A0A093I468_STRCA_441894 are exactly identical!
WARNING: Sequences tr_Q5ZI79_Q5ZI79_CHICK_9031 and tr_A0A091VLP5_A0A091VLP5_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_Q5ZI79_Q5ZI79_CHICK_9031 and tr_A0A099ZMC1_A0A099ZMC1_TINGU_94827 are exactly identical!
WARNING: Sequences tr_Q5ZI79_Q5ZI79_CHICK_9031 and tr_A0A091FUT6_A0A091FUT6_9AVES_55661 are exactly identical!
WARNING: Sequences tr_Q5ZI79_Q5ZI79_CHICK_9031 and tr_A0A0A0A1V1_A0A0A0A1V1_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_Q5ZI79_Q5ZI79_CHICK_9031 and tr_A0A2I0MQ45_A0A2I0MQ45_COLLI_8932 are exactly identical!
WARNING: Sequences tr_Q5ZI79_Q5ZI79_CHICK_9031 and tr_A0A091IIT3_A0A091IIT3_CALAN_9244 are exactly identical!
WARNING: Sequences tr_Q5ZI79_Q5ZI79_CHICK_9031 and tr_A0A1S2ZYN7_A0A1S2ZYN7_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_Q5ZI79_Q5ZI79_CHICK_9031 and tr_A0A1V4KLN9_A0A1V4KLN9_PATFA_372326 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_G1R9G6_G1R9G6_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_G3QMG7_G3QMG7_GORGO_9595 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_A0A2I3SLT6_A0A2I3SLT6_PANTR_9598 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_F6PK98_F6PK98_HORSE_9796 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_A0A096MJ70_A0A096MJ70_RAT_10116 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and sp_Q9HAZ2_PRD16_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_F7G9U9_F7G9U9_MACMU_9544 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_K7F8J8_K7F8J8_PELSI_13735 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_G3SMX3_G3SMX3_LOXAF_9785 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_A0A2R8MT64_A0A2R8MT64_CALJA_9483 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_A0A286ZPF9_A0A286ZPF9_PIG_9823 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_F1MTF1_F1MTF1_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_M3WIX5_M3WIX5_FELCA_9685 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_A0A091DI44_A0A091DI44_FUKDA_885580 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_A0A3Q0DFP9_A0A3Q0DFP9_TARSY_1868482 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_A0A3Q0D5H9_A0A3Q0D5H9_MESAU_10036 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_A0A2K5MKW0_A0A2K5MKW0_CERAT_9531 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_A0A2K6B930_A0A2K6B930_MACNE_9545 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_A0A2R9AC17_A0A2R9AC17_PANPA_9597 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_A0A2Y9E113_A0A2Y9E113_TRIMA_127582 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_A0A2Y9Q4R0_A0A2Y9Q4R0_DELLE_9749 are exactly identical!
WARNING: Sequences sp_A2A935_PRD16_MOUSE_10090 and tr_A0A383YU26_A0A383YU26_BALAS_310752 are exactly identical!
WARNING: Sequences sp_Q6YND2_ZN653_MOUSE_10090 and tr_G1RPW9_G1RPW9_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_Q6YND2_ZN653_MOUSE_10090 and tr_H2NXM4_H2NXM4_PONAB_9601 are exactly identical!
WARNING: Sequences sp_Q6YND2_ZN653_MOUSE_10090 and tr_H2QFE2_H2QFE2_PANTR_9598 are exactly identical!
WARNING: Sequences sp_Q6YND2_ZN653_MOUSE_10090 and tr_D3ZM61_D3ZM61_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q6YND2_ZN653_MOUSE_10090 and sp_Q96CK0_ZN653_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q6YND2_ZN653_MOUSE_10090 and tr_F7BSZ5_F7BSZ5_MACMU_9544 are exactly identical!
WARNING: Sequences sp_Q6YND2_ZN653_MOUSE_10090 and tr_F6YAW9_F6YAW9_CALJA_9483 are exactly identical!
WARNING: Sequences sp_Q6YND2_ZN653_MOUSE_10090 and tr_A0A2I3NEQ0_A0A2I3NEQ0_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_Q6YND2_ZN653_MOUSE_10090 and tr_A0A0D9R352_A0A0D9R352_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_Q6YND2_ZN653_MOUSE_10090 and tr_A0A2K5LD68_A0A2K5LD68_CERAT_9531 are exactly identical!
WARNING: Sequences sp_Q6YND2_ZN653_MOUSE_10090 and tr_A0A2K6DSF8_A0A2K6DSF8_MACNE_9545 are exactly identical!
WARNING: Sequences sp_Q6YND2_ZN653_MOUSE_10090 and tr_A0A2K5XKU7_A0A2K5XKU7_MANLE_9568 are exactly identical!
WARNING: Sequences sp_Q6YND2_ZN653_MOUSE_10090 and tr_A0A2R9AVK6_A0A2R9AVK6_PANPA_9597 are exactly identical!
WARNING: Sequences tr_W5JHF1_W5JHF1_ANODA_43151 and tr_Q7PQ71_Q7PQ71_ANOGA_7165 are exactly identical!
WARNING: Sequences tr_M3XNA2_M3XNA2_MUSPF_9669 and tr_A0A2I3H1U9_A0A2I3H1U9_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_M3XNA2_M3XNA2_MUSPF_9669 and tr_G3QPH7_G3QPH7_GORGO_9595 are exactly identical!
WARNING: Sequences tr_M3XNA2_M3XNA2_MUSPF_9669 and tr_H2PHU9_H2PHU9_PONAB_9601 are exactly identical!
WARNING: Sequences tr_M3XNA2_M3XNA2_MUSPF_9669 and tr_J9P5B5_J9P5B5_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3XNA2_M3XNA2_MUSPF_9669 and tr_A0A2I3TAS7_A0A2I3TAS7_PANTR_9598 are exactly identical!
WARNING: Sequences tr_M3XNA2_M3XNA2_MUSPF_9669 and tr_F7B7N6_F7B7N6_MACMU_9544 are exactly identical!
WARNING: Sequences tr_M3XNA2_M3XNA2_MUSPF_9669 and tr_G5BAT0_G5BAT0_HETGA_10181 are exactly identical!
WARNING: Sequences tr_M3XNA2_M3XNA2_MUSPF_9669 and tr_U3DM14_U3DM14_CALJA_9483 are exactly identical!
WARNING: Sequences tr_M3XNA2_M3XNA2_MUSPF_9669 and tr_G7P4C9_G7P4C9_MACFA_9541 are exactly identical!
WARNING: Sequences tr_M3XNA2_M3XNA2_MUSPF_9669 and tr_A0A096NKR1_A0A096NKR1_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_M3XNA2_M3XNA2_MUSPF_9669 and tr_A0A0D9R4V2_A0A0D9R4V2_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_M3XNA2_M3XNA2_MUSPF_9669 and tr_A0A1S3F6F0_A0A1S3F6F0_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_M3XNA2_M3XNA2_MUSPF_9669 and tr_A0A2K5NXB8_A0A2K5NXB8_CERAT_9531 are exactly identical!
WARNING: Sequences tr_M3XNA2_M3XNA2_MUSPF_9669 and tr_A0A2K6D313_A0A2K6D313_MACNE_9545 are exactly identical!
WARNING: Sequences tr_M3XNA2_M3XNA2_MUSPF_9669 and tr_A0A2K6A0K0_A0A2K6A0K0_MANLE_9568 are exactly identical!
WARNING: Sequences tr_M3XNA2_M3XNA2_MUSPF_9669 and tr_A0A2R9BI52_A0A2R9BI52_PANPA_9597 are exactly identical!
WARNING: Sequences tr_M3XNA2_M3XNA2_MUSPF_9669 and tr_A0A2U3ZL07_A0A2U3ZL07_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3XNA2_M3XNA2_MUSPF_9669 and tr_A0A2Y9E899_A0A2Y9E899_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_M3XNA2_M3XNA2_MUSPF_9669 and tr_A0A2Y9KJW9_A0A2Y9KJW9_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3XVA1_M3XVA1_MUSPF_9669 and tr_A0A3Q0DIX8_A0A3Q0DIX8_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_M3XVA1_M3XVA1_MUSPF_9669 and tr_A0A2R8ZTG5_A0A2R8ZTG5_PANPA_9597 are exactly identical!
WARNING: Sequences tr_M3Y0W1_M3Y0W1_MUSPF_9669 and tr_G3H695_G3H695_CRIGR_10029 are exactly identical!
WARNING: Sequences tr_M3Y0W1_M3Y0W1_MUSPF_9669 and tr_F1PVV6_F1PVV6_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3Y0W1_M3Y0W1_MUSPF_9669 and tr_H0WVJ1_H0WVJ1_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_M3Y0W1_M3Y0W1_MUSPF_9669 and tr_H0VHU3_H0VHU3_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_M3Y0W1_M3Y0W1_MUSPF_9669 and tr_G5AJT9_G5AJT9_HETGA_10181 are exactly identical!
WARNING: Sequences tr_M3Y0W1_M3Y0W1_MUSPF_9669 and tr_A0A287ATH1_A0A287ATH1_PIG_9823 are exactly identical!
WARNING: Sequences tr_M3Y0W1_M3Y0W1_MUSPF_9669 and tr_G1LVB2_G1LVB2_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3Y0W1_M3Y0W1_MUSPF_9669 and tr_E1B9B2_E1B9B2_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_M3Y0W1_M3Y0W1_MUSPF_9669 and tr_L5L3G4_L5L3G4_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_M3Y0W1_M3Y0W1_MUSPF_9669 and tr_M3W341_M3W341_FELCA_9685 are exactly identical!
WARNING: Sequences tr_M3Y0W1_M3Y0W1_MUSPF_9669 and tr_A0A3Q0CGF1_A0A3Q0CGF1_MESAU_10036 are exactly identical!
WARNING: Sequences tr_M3Y0W1_M3Y0W1_MUSPF_9669 and tr_A0A2U4B8S1_A0A2U4B8S1_TURTR_9739 are exactly identical!
WARNING: Sequences tr_M3Y0W1_M3Y0W1_MUSPF_9669 and tr_A0A2U3VUB7_A0A2U3VUB7_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3Y0W1_M3Y0W1_MUSPF_9669 and tr_A0A2U3XGJ7_A0A2U3XGJ7_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_M3Y0W1_M3Y0W1_MUSPF_9669 and tr_A0A2Y9DQH9_A0A2Y9DQH9_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_M3Y0W1_M3Y0W1_MUSPF_9669 and tr_A0A2Y9LLH5_A0A2Y9LLH5_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3Y0W1_M3Y0W1_MUSPF_9669 and tr_A0A2Y9LW49_A0A2Y9LW49_DELLE_9749 are exactly identical!
WARNING: Sequences tr_M3Y0W1_M3Y0W1_MUSPF_9669 and tr_A0A2Y9TKX0_A0A2Y9TKX0_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_M3Y0W1_M3Y0W1_MUSPF_9669 and tr_A0A383Z278_A0A383Z278_BALAS_310752 are exactly identical!
WARNING: Sequences tr_M3Y1C2_M3Y1C2_MUSPF_9669 and tr_F6UND0_F6UND0_MACMU_9544 are exactly identical!
WARNING: Sequences tr_M3Y1C2_M3Y1C2_MUSPF_9669 and tr_Q17QR0_Q17QR0_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_M3Y1C2_M3Y1C2_MUSPF_9669 and tr_A0A0D9RPI3_A0A0D9RPI3_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_M3Y440_M3Y440_MUSPF_9669 and tr_A0A2Y9L166_A0A2Y9L166_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3Y7W6_M3Y7W6_MUSPF_9669 and tr_F1Q029_F1Q029_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3Y7W6_M3Y7W6_MUSPF_9669 and tr_A0A2U3ZMU3_A0A2U3ZMU3_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3Y7W6_M3Y7W6_MUSPF_9669 and tr_A0A2Y9K9J3_A0A2Y9K9J3_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_Q9VJ55_Q9VJ55_DROME_7227 and tr_B4I5K4_B4I5K4_DROSE_7238 are exactly identical!
WARNING: Sequences tr_A0A3B3H9P3_A0A3B3H9P3_ORYLA_8090 and tr_A0A3B5QN87_A0A3B5QN87_XIPMA_8083 are exactly identical!
WARNING: Sequences tr_A0A3B3H9P3_A0A3B3H9P3_ORYLA_8090 and tr_A0A087XQ52_A0A087XQ52_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B3H9P3_A0A3B3H9P3_ORYLA_8090 and tr_A0A2I4BLR2_A0A2I4BLR2_9TELE_52670 are exactly identical!
WARNING: Sequences tr_A0A3B3H9P3_A0A3B3H9P3_ORYLA_8090 and tr_A0A2U9BP15_A0A2U9BP15_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_A0A3B3HPD9_A0A3B3HPD9_ORYLA_8090 and tr_I3JYH7_I3JYH7_ORENI_8128 are exactly identical!
WARNING: Sequences tr_A0A3B3HPD9_A0A3B3HPD9_ORYLA_8090 and tr_W5MQA8_W5MQA8_LEPOC_7918 are exactly identical!
WARNING: Sequences tr_A0A3B3HV17_A0A3B3HV17_ORYLA_8090 and tr_A0A3B5QK90_A0A3B5QK90_XIPMA_8083 are exactly identical!
WARNING: Sequences tr_A0A3B3HV17_A0A3B3HV17_ORYLA_8090 and tr_I3KRJ8_I3KRJ8_ORENI_8128 are exactly identical!
WARNING: Sequences tr_A0A3B3HV17_A0A3B3HV17_ORYLA_8090 and tr_H3D3F2_H3D3F2_TETNG_99883 are exactly identical!
WARNING: Sequences tr_A0A3B3HV17_A0A3B3HV17_ORYLA_8090 and tr_A0A087XNB8_A0A087XNB8_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B3HWW6_A0A3B3HWW6_ORYLA_8090 and tr_I3J450_I3J450_ORENI_8128 are exactly identical!
WARNING: Sequences tr_A0A3B3HWW6_A0A3B3HWW6_ORYLA_8090 and tr_A0A087YMC0_A0A087YMC0_POEFO_48698 are exactly identical!
WARNING: Sequences tr_H2M9D5_H2M9D5_ORYLA_8090 and tr_A0A3B5Q1F1_A0A3B5Q1F1_XIPMA_8083 are exactly identical!
WARNING: Sequences tr_H2M9D5_H2M9D5_ORYLA_8090 and tr_I3JDT6_I3JDT6_ORENI_8128 are exactly identical!
WARNING: Sequences tr_H2M9D5_H2M9D5_ORYLA_8090 and tr_G3NWE1_G3NWE1_GASAC_69293 are exactly identical!
WARNING: Sequences tr_H2M9D5_H2M9D5_ORYLA_8090 and tr_A0A087Y2F9_A0A087Y2F9_POEFO_48698 are exactly identical!
WARNING: Sequences tr_H2M9D5_H2M9D5_ORYLA_8090 and tr_A0A2I4BZ76_A0A2I4BZ76_9TELE_52670 are exactly identical!
WARNING: Sequences tr_H2M9D5_H2M9D5_ORYLA_8090 and tr_A0A2U9B5L7_A0A2U9B5L7_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_G3QLI5_G3QLI5_GORGO_9595 and tr_H2QGK6_H2QGK6_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3QLI5_G3QLI5_GORGO_9595 and sp_Q8WUU4_ZN296_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3QLI5_G3QLI5_GORGO_9595 and tr_A0A2R8ZM65_A0A2R8ZM65_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2N9D8_H2N9D8_PONAB_9601 and tr_G1MSR2_G1MSR2_MELGA_9103 are exactly identical!
WARNING: Sequences tr_H2P652_H2P652_PONAB_9601 and tr_W5NUA3_W5NUA3_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_H2P652_H2P652_PONAB_9601 and tr_H0XTJ4_H0XTJ4_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_H2P652_H2P652_PONAB_9601 and tr_A0A091CTC6_A0A091CTC6_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_G1NBP5_G1NBP5_MELGA_9103 and tr_H0VJX1_H0VJX1_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_G1NBP5_G1NBP5_MELGA_9103 and tr_F1MV04_F1MV04_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_G1NBP5_G1NBP5_MELGA_9103 and tr_U3K8X8_U3K8X8_FICAL_59894 are exactly identical!
WARNING: Sequences tr_G1NBP5_G1NBP5_MELGA_9103 and tr_U3IGR9_U3IGR9_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_G1NBP5_G1NBP5_MELGA_9103 and tr_A0A091EKH3_A0A091EKH3_CORBR_85066 are exactly identical!
WARNING: Sequences tr_G1NBP5_G1NBP5_MELGA_9103 and tr_A0A091UYL6_A0A091UYL6_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_G1NBP5_G1NBP5_MELGA_9103 and tr_A0A087QNG1_A0A087QNG1_APTFO_9233 are exactly identical!
WARNING: Sequences tr_G1NBP5_G1NBP5_MELGA_9103 and tr_A0A093H4I9_A0A093H4I9_STRCA_441894 are exactly identical!
WARNING: Sequences tr_G1NBP5_G1NBP5_MELGA_9103 and tr_A0A0A0A4B3_A0A0A0A4B3_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_G1NBP5_G1NBP5_MELGA_9103 and tr_A0A093G7D3_A0A093G7D3_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_G1NBP5_G1NBP5_MELGA_9103 and tr_A0A1S3G700_A0A1S3G700_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_G1NBP5_G1NBP5_MELGA_9103 and tr_A0A1V4JQF5_A0A1V4JQF5_PATFA_372326 are exactly identical!
WARNING: Sequences tr_G1NBP5_G1NBP5_MELGA_9103 and tr_A0A218UUF5_A0A218UUF5_9PASE_299123 are exactly identical!
WARNING: Sequences tr_G1NBP5_G1NBP5_MELGA_9103 and tr_A0A226MWL3_A0A226MWL3_CALSU_9009 are exactly identical!
WARNING: Sequences tr_G1NBP5_G1NBP5_MELGA_9103 and tr_A0A226P0S7_A0A226P0S7_COLVI_9014 are exactly identical!
WARNING: Sequences tr_G1NBP5_G1NBP5_MELGA_9103 and tr_A0A2R8ZAS9_A0A2R8ZAS9_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F6UG52_F6UG52_MONDO_13616 and tr_F6WDB4_F6WDB4_HORSE_9796 are exactly identical!
WARNING: Sequences tr_F6Q3H1_F6Q3H1_HORSE_9796 and sp_Q92766_RREB1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A0G2K4K0_A0A0G2K4K0_RAT_10116 and tr_A0A1U7Q768_A0A1U7Q768_MESAU_10036 are exactly identical!
WARNING: Sequences tr_A0A3B5PVA9_A0A3B5PVA9_XIPMA_8083 and tr_A0A087XCV0_A0A087XCV0_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B5PVA9_A0A3B5PVA9_XIPMA_8083 and tr_A0A2U9CU76_A0A2U9CU76_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_A0A087ZWL4_A0A087ZWL4_APIME_7460 and tr_A0A158NPF2_A0A158NPF2_ATTCE_12957 are exactly identical!
WARNING: Sequences tr_A0A087ZWL4_A0A087ZWL4_APIME_7460 and tr_F4X7S6_F4X7S6_ACREC_103372 are exactly identical!
WARNING: Sequences tr_A0A087ZWL4_A0A087ZWL4_APIME_7460 and tr_A0A0L7R2H0_A0A0L7R2H0_9HYME_597456 are exactly identical!
WARNING: Sequences tr_A0A087ZWL4_A0A087ZWL4_APIME_7460 and tr_A0A151WRJ7_A0A151WRJ7_9HYME_64791 are exactly identical!
WARNING: Sequences tr_A0A087ZWL4_A0A087ZWL4_APIME_7460 and tr_A0A154PJV1_A0A154PJV1_9HYME_178035 are exactly identical!
WARNING: Sequences tr_A0A087ZWL4_A0A087ZWL4_APIME_7460 and tr_A0A195E624_A0A195E624_9HYME_471704 are exactly identical!
WARNING: Sequences tr_A0A087ZWL4_A0A087ZWL4_APIME_7460 and tr_A0A195B9A9_A0A195B9A9_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A087ZWL4_A0A087ZWL4_APIME_7460 and tr_A0A195ETV9_A0A195ETV9_9HYME_34720 are exactly identical!
WARNING: Sequences tr_A0A087ZWL4_A0A087ZWL4_APIME_7460 and tr_A0A195D0J0_A0A195D0J0_9HYME_456900 are exactly identical!
WARNING: Sequences tr_A0A087ZWL4_A0A087ZWL4_APIME_7460 and tr_A0A2A3E3M7_A0A2A3E3M7_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A087ZZM7_A0A087ZZM7_APIME_7460 and tr_A0A2A3ECH1_A0A2A3ECH1_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A158NA57_A0A158NA57_ATTCE_12957 and tr_F4X1C9_F4X1C9_ACREC_103372 are exactly identical!
WARNING: Sequences tr_A0A158NA57_A0A158NA57_ATTCE_12957 and tr_A0A195DLU1_A0A195DLU1_9HYME_471704 are exactly identical!
WARNING: Sequences tr_A0A158NA57_A0A158NA57_ATTCE_12957 and tr_A0A195BJ42_A0A195BJ42_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A158NA57_A0A158NA57_ATTCE_12957 and tr_A0A195FQU4_A0A195FQU4_9HYME_34720 are exactly identical!
WARNING: Sequences tr_I3IXL3_I3IXL3_ORENI_8128 and tr_H2VAP2_H2VAP2_TAKRU_31033 are exactly identical!
WARNING: Sequences tr_I3JMM9_I3JMM9_ORENI_8128 and tr_A0A2U9CRK2_A0A2U9CRK2_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_I3MU39_I3MU39_ICTTR_43179 and tr_A0A286XH47_A0A286XH47_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_I3MU39_I3MU39_ICTTR_43179 and tr_A0A2Y9SGE8_A0A2Y9SGE8_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_I3MU39_I3MU39_ICTTR_43179 and tr_A0A383ZGZ5_A0A383ZGZ5_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A0A0K0J9X5_A0A0K0J9X5_BRUMA_6279 and tr_A0A0N4TMY8_A0A0N4TMY8_BRUPA_6280 are exactly identical!
WARNING: Sequences tr_F7FDN3_F7FDN3_MACMU_9544 and tr_A0A2K6BUI0_A0A2K6BUI0_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G5B4A4_G5B4A4_HETGA_10181 and tr_G7PBL4_G7PBL4_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G5C8I1_G5C8I1_HETGA_10181 and tr_F1SH30_F1SH30_PIG_9823 are exactly identical!
WARNING: Sequences tr_G5C8I1_G5C8I1_HETGA_10181 and tr_A0A091DHP0_A0A091DHP0_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_G5CBL9_G5CBL9_HETGA_10181 and tr_A0A091EE04_A0A091EE04_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_E5S685_E5S685_TRISP_6334 and tr_A0A0V0SFB8_A0A0V0SFB8_9BILA_6336 are exactly identical!
WARNING: Sequences tr_E5S685_E5S685_TRISP_6334 and tr_A0A0V1D3W6_A0A0V1D3W6_TRIBR_45882 are exactly identical!
WARNING: Sequences tr_E5S685_E5S685_TRISP_6334 and tr_A0A0V0XAP8_A0A0V0XAP8_9BILA_92179 are exactly identical!
WARNING: Sequences tr_E5S685_E5S685_TRISP_6334 and tr_A0A0V0V3D1_A0A0V0V3D1_9BILA_181606 are exactly identical!
WARNING: Sequences tr_E5S685_E5S685_TRISP_6334 and tr_A0A0V1LN83_A0A0V1LN83_9BILA_6335 are exactly identical!
WARNING: Sequences tr_E5S685_E5S685_TRISP_6334 and tr_A0A0V0TY33_A0A0V0TY33_9BILA_144512 are exactly identical!
WARNING: Sequences tr_Q7Q582_Q7Q582_ANOGA_7165 and tr_Q16I75_Q16I75_AEDAE_7159 are exactly identical!
WARNING: Sequences tr_Q7Q582_Q7Q582_ANOGA_7165 and tr_Q17DB6_Q17DB6_AEDAE_7159 are exactly identical!
WARNING: Sequences tr_Q7Q582_Q7Q582_ANOGA_7165 and tr_A0A084WMS0_A0A084WMS0_ANOSI_74873 are exactly identical!
WARNING: Sequences tr_D6WWQ2_D6WWQ2_TRICA_7070 and tr_N6TBR2_N6TBR2_DENPD_77166 are exactly identical!
WARNING: Sequences tr_D6X386_D6X386_TRICA_7070 and tr_A0A1W4XJY2_A0A1W4XJY2_AGRPL_224129 are exactly identical!
WARNING: Sequences tr_G3PJF5_G3PJF5_GASAC_69293 and tr_A0A2I4AYB7_A0A2I4AYB7_9TELE_52670 are exactly identical!
WARNING: Sequences tr_G3Q6A1_G3Q6A1_GASAC_69293 and tr_A0A2U9BPT8_A0A2U9BPT8_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_G3WDY1_G3WDY1_SARHA_9305 and tr_A0A2I0M2X1_A0A2I0M2X1_COLLI_8932 are exactly identical!
WARNING: Sequences tr_H0ZFL5_H0ZFL5_TAEGU_59729 and tr_U3JQ35_U3JQ35_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H0ZFL5_H0ZFL5_TAEGU_59729 and tr_A0A218VE19_A0A218VE19_9PASE_299123 are exactly identical!
WARNING: Sequences tr_B3MRT1_B3MRT1_DROAN_7217 and tr_B4L2B9_B4L2B9_DROMO_7230 are exactly identical!
WARNING: Sequences tr_Q08D47_Q08D47_XENTR_8364 and tr_A0A1L8G7Q4_A0A1L8G7Q4_XENLA_8355 are exactly identical!
WARNING: Sequences tr_E3LUR3_E3LUR3_CAERE_31234 and tr_A0A261BZ74_A0A261BZ74_9PELO_1503980 are exactly identical!
WARNING: Sequences tr_B4G5D2_B4G5D2_DROPE_7234 and sp_Q24732_GLAS_DROVI_7244 are exactly identical!
WARNING: Sequences tr_B4G5D2_B4G5D2_DROPE_7234 and tr_A0A0M5J936_A0A0M5J936_DROBS_30019 are exactly identical!
WARNING: Sequences tr_W5MDI2_W5MDI2_LEPOC_7918 and tr_A0A0P7UHB0_A0A0P7UHB0_9TELE_113540 are exactly identical!
WARNING: Sequences tr_W5MTI4_W5MTI4_LEPOC_7918 and tr_A0A0P7V167_A0A0P7V167_9TELE_113540 are exactly identical!
WARNING: Sequences tr_A0A044UK99_A0A044UK99_ONCVO_6282 and tr_A0A182E797_A0A182E797_ONCOC_42157 are exactly identical!
WARNING: Sequences tr_A0A067RGM8_A0A067RGM8_ZOONE_136037 and tr_A0A2J7QLP5_A0A2J7QLP5_9NEOP_105785 are exactly identical!
WARNING: Sequences tr_A0A0A0MWK1_A0A0A0MWK1_PAPAN_9555 and tr_A0A0D9S1T2_A0A0D9S1T2_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A0A0MWK1_A0A0A0MWK1_PAPAN_9555 and tr_A0A2K5KUH4_A0A2K5KUH4_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A0A0MWK1_A0A0A0MWK1_PAPAN_9555 and tr_A0A2K6BPP4_A0A2K6BPP4_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A0A0MWK1_A0A0A0MWK1_PAPAN_9555 and tr_A0A2K5YEB9_A0A2K5YEB9_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A0K0G038_A0A0K0G038_STRVS_75913 and tr_A0A0N5CG31_A0A0N5CG31_STREA_174720 are exactly identical!
WARNING: Sequences tr_A0A0K0E8L2_A0A0K0E8L2_STRER_6248 and tr_A0A090MVR2_A0A090MVR2_STRRB_34506 are exactly identical!
WARNING: Sequences tr_A0A151LYG9_A0A151LYG9_ALLMI_8496 and tr_A0A1U8DXH8_A0A1U8DXH8_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151NF36_A0A151NF36_ALLMI_8496 and tr_A0A3Q0H317_A0A3Q0H317_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151NFU1_A0A151NFU1_ALLMI_8496 and tr_A0A099Z2B6_A0A099Z2B6_TINGU_94827 are exactly identical!
WARNING: Sequences tr_A0A091J8J3_A0A091J8J3_EGRGA_188379 and tr_A0A087R1V0_A0A087R1V0_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A091J8J3_A0A091J8J3_EGRGA_188379 and tr_A0A0A0AKN8_A0A0A0AKN8_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A091W3A1_A0A091W3A1_NIPNI_128390 and tr_A0A091G5D6_A0A091G5D6_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A2I0MXR5_A0A2I0MXR5_COLLI_8932 and tr_A0A1V4JY76_A0A1V4JY76_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A0V1MDX2_A0A0V1MDX2_9BILA_268474 and tr_A0A0V1H6C1_A0A0V1H6C1_9BILA_268475 are exactly identical!
WARNING: Sequences tr_A0A1S3WK50_A0A1S3WK50_ERIEU_9365 and tr_A0A1S3GIH5_A0A1S3GIH5_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_A0A1S3M7P5_A0A1S3M7P5_SALSA_8030 and tr_A0A060XZK6_A0A060XZK6_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3N3N7_A0A1S3N3N7_SALSA_8030 and tr_A0A060XZC1_A0A060XZC1_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3NRA2_A0A1S3NRA2_SALSA_8030 and tr_A0A1S3SY72_A0A1S3SY72_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3QJI1_A0A1S3QJI1_SALSA_8030 and tr_A0A060YRN2_A0A060YRN2_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3RGC4_A0A1S3RGC4_SALSA_8030 and tr_A0A1S3SJH6_A0A1S3SJH6_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3RGC4_A0A1S3RGC4_SALSA_8030 and tr_A0A060XBH8_A0A060XBH8_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3RGC4_A0A1S3RGC4_SALSA_8030 and tr_A0A060XVG4_A0A060XVG4_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3S470_A0A1S3S470_SALSA_8030 and tr_A0A060YQ04_A0A060YQ04_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3SB47_A0A1S3SB47_SALSA_8030 and tr_A0A060Y6N7_A0A060Y6N7_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3SXS6_A0A1S3SXS6_SALSA_8030 and tr_A0A060X6R2_A0A060X6R2_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1D1W586_A0A1D1W586_RAMVA_947166 and tr_A0A1D1W5S4_A0A1D1W5S4_RAMVA_947166 are exactly identical!
WARNING: Sequences tr_A0A2D0Q9I6_A0A2D0Q9I6_ICTPU_7998 and tr_A0A2D0QAP8_A0A2D0QAP8_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0Q9I6_A0A2D0Q9I6_ICTPU_7998 and tr_A0A2D0QCA9_A0A2D0QCA9_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0R0M0_A0A2D0R0M0_ICTPU_7998 and tr_A0A2D0R234_A0A2D0R234_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0R0M0_A0A2D0R0M0_ICTPU_7998 and tr_A0A2D0R238_A0A2D0R238_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0R0M0_A0A2D0R0M0_ICTPU_7998 and tr_A0A2D0R2R5_A0A2D0R2R5_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2J7QSP6_A0A2J7QSP6_9NEOP_105785 and tr_A0A2P8ZPJ5_A0A2P8ZPJ5_BLAGE_6973 are exactly identical!
WARNING: Sequences tr_A0A2U4B296_A0A2U4B296_TURTR_9739 and tr_A0A2Y9P7A3_A0A2Y9P7A3_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2Y9K7X4_A0A2Y9K7X4_ENHLU_391180 and tr_A0A2Y9K8U2_A0A2Y9K8U2_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_A0A2Y9TI34_A0A2Y9TI34_PHYCD_9755 and tr_A0A383YZ85_A0A383YZ85_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 431

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H165/3_mltree/Q9H165.raxml.reduced.phy

Alignment comprises 1 partitions and 119 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 119 / 119
Gaps: 7.52 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H165/3_mltree/Q9H165.raxml.rba

Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 994 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 119 / 9520
[00:00:00] Data distribution: max. searches per worker: 10

Starting ML tree search with 20 distinct starting trees

[00:00:00 -190885.066913] Initial branch length optimization
[00:00:03 -150156.484496] Model parameter optimization (eps = 10.000000)
[00:00:32 -149610.955539] AUTODETECT spr round 1 (radius: 5)
[00:02:51 -98618.023476] AUTODETECT spr round 2 (radius: 10)
[00:05:19 -65736.966411] AUTODETECT spr round 3 (radius: 15)
[00:08:02 -52780.478098] AUTODETECT spr round 4 (radius: 20)
[00:11:00 -41833.445443] AUTODETECT spr round 5 (radius: 25)
[00:13:44 -39043.612539] SPR radius for FAST iterations: 25 (autodetect)
[00:13:44 -39043.612539] Model parameter optimization (eps = 3.000000)
[00:14:08 -38969.641712] FAST spr round 1 (radius: 25)
[00:16:49 -32035.760878] FAST spr round 2 (radius: 25)
[00:18:57 -31362.220120] FAST spr round 3 (radius: 25)
[00:20:51 -31318.631615] FAST spr round 4 (radius: 25)
[00:22:35 -31318.630795] Model parameter optimization (eps = 1.000000)
[00:22:53 -31306.110688] SLOW spr round 1 (radius: 5)
[00:24:44 -31301.681613] SLOW spr round 2 (radius: 5)
[00:26:37 -31301.142291] SLOW spr round 3 (radius: 5)
[00:28:31 -31301.140989] SLOW spr round 4 (radius: 10)
[00:30:33 -31299.017583] SLOW spr round 5 (radius: 5)
[00:32:47 -31296.424570] SLOW spr round 6 (radius: 5)
[00:34:49 -31296.423720] SLOW spr round 7 (radius: 10)
[00:36:53 -31292.800891] SLOW spr round 8 (radius: 5)
[00:39:04 -31290.521069] SLOW spr round 9 (radius: 5)
[00:41:01 -31290.521040] SLOW spr round 10 (radius: 10)
[00:43:04 -31290.520958] SLOW spr round 11 (radius: 15)
[00:45:45 -31289.422040] SLOW spr round 12 (radius: 5)
[00:48:00 -31289.421928] SLOW spr round 13 (radius: 10)
[00:50:13 -31288.716937] SLOW spr round 14 (radius: 5)
[00:52:24 -31288.425300] SLOW spr round 15 (radius: 5)
[00:54:22 -31288.425192] SLOW spr round 16 (radius: 10)
[00:56:22 -31288.425165] SLOW spr round 17 (radius: 15)
[00:59:02 -31288.425153] SLOW spr round 18 (radius: 20)
[01:02:31 -31288.425146] SLOW spr round 19 (radius: 25)
[01:06:34 -31284.983811] SLOW spr round 20 (radius: 5)
[01:08:55 -31277.804096] SLOW spr round 21 (radius: 5)
[01:11:00 -31277.803975] SLOW spr round 22 (radius: 10)
[01:13:08 -31276.834363] SLOW spr round 23 (radius: 5)
[01:15:15 -31276.834325] SLOW spr round 24 (radius: 10)
[01:17:21 -31276.834306] SLOW spr round 25 (radius: 15)
[01:19:56 -31276.834288] SLOW spr round 26 (radius: 20)
[01:23:19 -31276.834284] SLOW spr round 27 (radius: 25)
[01:27:20 -31274.234140] SLOW spr round 28 (radius: 5)
[01:29:40 -31272.325196] SLOW spr round 29 (radius: 5)
[01:31:45 -31272.323490] SLOW spr round 30 (radius: 10)
[01:33:52 -31271.589945] SLOW spr round 31 (radius: 5)
[01:36:01 -31268.445982] SLOW spr round 32 (radius: 5)
[01:37:57 -31266.509148] SLOW spr round 33 (radius: 5)
[01:39:46 -31266.508962] SLOW spr round 34 (radius: 10)
[01:41:09] [worker #1] ML tree search #2, logLikelihood: -30681.384733
[01:41:44 -31266.508939] SLOW spr round 35 (radius: 15)
[01:44:24 -31265.384304] SLOW spr round 36 (radius: 5)
[01:46:38 -31265.383674] SLOW spr round 37 (radius: 10)
[01:48:47 -31265.383388] SLOW spr round 38 (radius: 15)
[01:51:23 -31264.369758] SLOW spr round 39 (radius: 5)
[01:53:38 -31264.368603] SLOW spr round 40 (radius: 10)
[01:55:49 -31264.085043] SLOW spr round 41 (radius: 5)
[01:57:54 -31264.084144] SLOW spr round 42 (radius: 10)
[02:00:00 -31264.083792] SLOW spr round 43 (radius: 15)
[02:02:36 -31264.083599] SLOW spr round 44 (radius: 20)
[02:06:07 -31252.709929] SLOW spr round 45 (radius: 5)
[02:08:23 -31251.920964] SLOW spr round 46 (radius: 5)
[02:10:34 -31118.667515] SLOW spr round 47 (radius: 5)
[02:12:30 -31116.104809] SLOW spr round 48 (radius: 5)
[02:14:19 -31116.104075] SLOW spr round 49 (radius: 10)
[02:16:16 -31116.104062] SLOW spr round 50 (radius: 15)
[02:18:56 -31116.104062] SLOW spr round 51 (radius: 20)
[02:22:28 -31116.104062] SLOW spr round 52 (radius: 25)
[02:26:53 -31113.704430] SLOW spr round 53 (radius: 5)
[02:29:10 -31113.673013] SLOW spr round 54 (radius: 10)
[02:31:24 -31112.908401] SLOW spr round 55 (radius: 5)
[02:33:29 -31112.906589] SLOW spr round 56 (radius: 10)
[02:35:34 -31112.906440] SLOW spr round 57 (radius: 15)
[02:38:13 -31112.906427] SLOW spr round 58 (radius: 20)
[02:41:47 -31112.906426] SLOW spr round 59 (radius: 25)
[02:46:11 -31112.906426] Model parameter optimization (eps = 0.100000)

[02:46:23] [worker #0] ML tree search #1, logLikelihood: -31112.627864

[02:46:23 -192411.958398] Initial branch length optimization
[02:46:26 -150811.370258] Model parameter optimization (eps = 10.000000)
[02:47:03 -150300.723387] AUTODETECT spr round 1 (radius: 5)
[02:49:19 -97169.404588] AUTODETECT spr round 2 (radius: 10)
[02:51:46 -63983.212566] AUTODETECT spr round 3 (radius: 15)
[02:54:30 -48147.916340] AUTODETECT spr round 4 (radius: 20)
[02:57:15 -43950.148880] AUTODETECT spr round 5 (radius: 25)
[03:00:03 -39205.324745] SPR radius for FAST iterations: 25 (autodetect)
[03:00:03 -39205.324745] Model parameter optimization (eps = 3.000000)
[03:00:31 -39116.604339] FAST spr round 1 (radius: 25)
[03:03:02 -32518.487084] FAST spr round 2 (radius: 25)
[03:05:12 -31605.348534] FAST spr round 3 (radius: 25)
[03:07:09 -31157.786475] FAST spr round 4 (radius: 25)
[03:09:00 -31124.515619] FAST spr round 5 (radius: 25)
[03:10:45 -31115.356513] FAST spr round 6 (radius: 25)
[03:12:28 -31115.356328] Model parameter optimization (eps = 1.000000)
[03:12:43 -31112.118661] SLOW spr round 1 (radius: 5)
[03:14:35 -31104.685410] SLOW spr round 2 (radius: 5)
[03:16:29 -31099.453807] SLOW spr round 3 (radius: 5)
[03:18:21 -31097.832664] SLOW spr round 4 (radius: 5)
[03:20:11 -31095.676828] SLOW spr round 5 (radius: 5)
[03:21:58 -31095.676466] SLOW spr round 6 (radius: 10)
[03:23:58 -31093.747553] SLOW spr round 7 (radius: 5)
[03:26:10 -31090.509086] SLOW spr round 8 (radius: 5)
[03:28:12 -31082.911075] SLOW spr round 9 (radius: 5)
[03:30:08 -31082.493611] SLOW spr round 10 (radius: 5)
[03:31:59 -31082.492960] SLOW spr round 11 (radius: 10)
[03:33:57 -31082.492535] SLOW spr round 12 (radius: 15)
[03:36:39 -31081.984122] SLOW spr round 13 (radius: 5)
[03:38:52 -31081.983840] SLOW spr round 14 (radius: 10)
[03:41:02 -31081.117100] SLOW spr round 15 (radius: 5)
[03:42:13] [worker #1] ML tree search #4, logLikelihood: -31041.081327
[03:43:09 -31081.105314] SLOW spr round 16 (radius: 10)
[03:45:15 -31081.104929] SLOW spr round 17 (radius: 15)
[03:47:54 -31081.104788] SLOW spr round 18 (radius: 20)
[03:51:20 -31081.104710] SLOW spr round 19 (radius: 25)
[03:55:27 -31065.059884] SLOW spr round 20 (radius: 5)
[03:57:44 -31065.037221] SLOW spr round 21 (radius: 10)
[03:59:58 -31062.395507] SLOW spr round 22 (radius: 5)
[04:02:04 -31062.395345] SLOW spr round 23 (radius: 10)
[04:04:10 -31061.460339] SLOW spr round 24 (radius: 5)
[04:06:17 -31061.460298] SLOW spr round 25 (radius: 10)
[04:08:23 -31061.460283] SLOW spr round 26 (radius: 15)
[04:10:59 -31061.460277] SLOW spr round 27 (radius: 20)
[04:14:24 -31061.460263] SLOW spr round 28 (radius: 25)
[04:18:32 -31018.975505] SLOW spr round 29 (radius: 5)
[04:20:53 -31011.610668] SLOW spr round 30 (radius: 5)
[04:22:57 -31011.057914] SLOW spr round 31 (radius: 5)
[04:24:52 -31011.057888] SLOW spr round 32 (radius: 10)
[04:26:50 -30997.969137] SLOW spr round 33 (radius: 5)
[04:28:57 -30997.969085] SLOW spr round 34 (radius: 10)
[04:31:05 -30959.391074] SLOW spr round 35 (radius: 5)
[04:33:17 -30941.004047] SLOW spr round 36 (radius: 5)
[04:35:20 -30931.034772] SLOW spr round 37 (radius: 5)
[04:37:14 -30928.754742] SLOW spr round 38 (radius: 5)
[04:39:01 -30928.750712] SLOW spr round 39 (radius: 10)
[04:40:57 -30928.750551] SLOW spr round 40 (radius: 15)
[04:43:38 -30928.750389] SLOW spr round 41 (radius: 20)
[04:47:12 -30928.750228] SLOW spr round 42 (radius: 25)
[04:47:23] [worker #1] ML tree search #6, logLikelihood: -31136.571334
[04:51:38 -30877.415324] SLOW spr round 43 (radius: 5)
[04:53:59 -30712.143473] SLOW spr round 44 (radius: 5)
[04:56:07 -30681.735387] SLOW spr round 45 (radius: 5)
[04:58:02 -30681.734779] SLOW spr round 46 (radius: 10)
[05:00:00 -30679.470307] SLOW spr round 47 (radius: 5)
[05:02:07 -30678.811558] SLOW spr round 48 (radius: 5)
[05:04:03 -30678.811396] SLOW spr round 49 (radius: 10)
[05:06:01 -30678.811234] SLOW spr round 50 (radius: 15)
[05:08:41 -30678.811072] SLOW spr round 51 (radius: 20)
[05:12:12 -30678.810911] SLOW spr round 52 (radius: 25)
[05:16:30 -30678.810749] Model parameter optimization (eps = 0.100000)

[05:16:44] [worker #0] ML tree search #3, logLikelihood: -30678.395574

[05:16:44 -194047.946129] Initial branch length optimization
[05:16:46 -152826.799320] Model parameter optimization (eps = 10.000000)
[05:17:41 -152292.174184] AUTODETECT spr round 1 (radius: 5)
[05:19:58 -94417.248595] AUTODETECT spr round 2 (radius: 10)
[05:22:26 -61376.881399] AUTODETECT spr round 3 (radius: 15)
[05:24:57 -47685.118042] AUTODETECT spr round 4 (radius: 20)
[05:28:03 -41144.078594] AUTODETECT spr round 5 (radius: 25)
[05:31:02 -37811.372288] SPR radius for FAST iterations: 25 (autodetect)
[05:31:02 -37811.372288] Model parameter optimization (eps = 3.000000)
[05:31:35 -37717.480001] FAST spr round 1 (radius: 25)
[05:34:18 -31901.818898] FAST spr round 2 (radius: 25)
[05:36:35 -31535.778150] FAST spr round 3 (radius: 25)
[05:38:29 -31484.768098] FAST spr round 4 (radius: 25)
[05:40:19 -31479.236172] FAST spr round 5 (radius: 25)
[05:42:04 -31471.700822] FAST spr round 6 (radius: 25)
[05:43:48 -31471.233288] FAST spr round 7 (radius: 25)
[05:45:30 -31471.232806] Model parameter optimization (eps = 1.000000)
[05:45:49 -31461.047912] SLOW spr round 1 (radius: 5)
[05:47:41 -31454.213142] SLOW spr round 2 (radius: 5)
[05:49:33 -31452.900356] SLOW spr round 3 (radius: 5)
[05:51:25 -31452.899534] SLOW spr round 4 (radius: 10)
[05:53:28 -31449.212769] SLOW spr round 5 (radius: 5)
[05:55:43 -31448.877925] SLOW spr round 6 (radius: 5)
[05:57:45 -31448.877047] SLOW spr round 7 (radius: 10)
[05:59:49 -31446.223012] SLOW spr round 8 (radius: 5)
[06:02:03 -31445.904854] SLOW spr round 9 (radius: 5)
[06:04:03 -31445.904228] SLOW spr round 10 (radius: 10)
[06:06:08 -31441.549421] SLOW spr round 11 (radius: 5)
[06:08:22 -31440.259463] SLOW spr round 12 (radius: 5)
[06:10:22 -31440.259414] SLOW spr round 13 (radius: 10)
[06:12:23 -31440.259387] SLOW spr round 14 (radius: 15)
[06:15:01 -31439.813967] SLOW spr round 15 (radius: 5)
[06:17:18 -31439.804851] SLOW spr round 16 (radius: 10)
[06:19:30 -31439.804638] SLOW spr round 17 (radius: 15)
[06:22:07 -31438.931215] SLOW spr round 18 (radius: 5)
[06:22:26] [worker #1] ML tree search #8, logLikelihood: -31910.514131
[06:24:25 -31438.876122] SLOW spr round 19 (radius: 10)
[06:26:41 -31430.639329] SLOW spr round 20 (radius: 5)
[06:28:55 -31429.868634] SLOW spr round 21 (radius: 5)
[06:30:56 -31429.727358] SLOW spr round 22 (radius: 5)
[06:32:50 -31429.725856] SLOW spr round 23 (radius: 10)
[06:34:50 -31429.725658] SLOW spr round 24 (radius: 15)
[06:37:30 -31427.828748] SLOW spr round 25 (radius: 5)
[06:39:49 -31427.410326] SLOW spr round 26 (radius: 5)
[06:41:53 -31427.270190] SLOW spr round 27 (radius: 5)
[06:43:49 -31427.270022] SLOW spr round 28 (radius: 10)
[06:45:50 -31427.270012] SLOW spr round 29 (radius: 15)
[06:48:28 -31427.270005] SLOW spr round 30 (radius: 20)
[06:51:44 -31427.269999] SLOW spr round 31 (radius: 25)
[06:55:43 -31099.035356] SLOW spr round 32 (radius: 5)
[06:58:09 -30976.774727] SLOW spr round 33 (radius: 5)
[07:00:18 -30974.956426] SLOW spr round 34 (radius: 5)
[07:02:20 -30969.754982] SLOW spr round 35 (radius: 5)
[07:04:18 -30969.132744] SLOW spr round 36 (radius: 5)
[07:06:12 -30969.132090] SLOW spr round 37 (radius: 10)
[07:08:11 -30969.131640] SLOW spr round 38 (radius: 15)
[07:10:57 -30748.665589] SLOW spr round 39 (radius: 5)
[07:13:19 -30731.865326] SLOW spr round 40 (radius: 5)
[07:15:27 -30726.317754] SLOW spr round 41 (radius: 5)
[07:17:22 -30726.317679] SLOW spr round 42 (radius: 10)
[07:19:26 -30715.897591] SLOW spr round 43 (radius: 5)
[07:21:42 -30709.043243] SLOW spr round 44 (radius: 5)
[07:23:44 -30703.928810] SLOW spr round 45 (radius: 5)
[07:25:37 -30703.928611] SLOW spr round 46 (radius: 10)
[07:27:39 -30693.048526] SLOW spr round 47 (radius: 5)
[07:29:53 -30682.587918] SLOW spr round 48 (radius: 5)
[07:31:52 -30682.586716] SLOW spr round 49 (radius: 10)
[07:33:53 -30682.586285] SLOW spr round 50 (radius: 15)
[07:36:30 -30680.080775] SLOW spr round 51 (radius: 5)
[07:38:48 -30679.643281] SLOW spr round 52 (radius: 5)
[07:40:51 -30679.643066] SLOW spr round 53 (radius: 10)
[07:42:53 -30679.643065] SLOW spr round 54 (radius: 15)
[07:45:29 -30679.643065] SLOW spr round 55 (radius: 20)
[07:48:39 -30679.643065] SLOW spr round 56 (radius: 25)
[07:52:17 -30679.642970] Model parameter optimization (eps = 0.100000)

[07:52:27] [worker #0] ML tree search #5, logLikelihood: -30679.400736

[07:52:27 -193449.287284] Initial branch length optimization
[07:52:29 -151327.772620] Model parameter optimization (eps = 10.000000)
[07:53:04 -150739.748171] AUTODETECT spr round 1 (radius: 5)
[07:55:18 -96108.641655] AUTODETECT spr round 2 (radius: 10)
[07:57:47 -63997.926706] AUTODETECT spr round 3 (radius: 15)
[07:59:56] [worker #1] ML tree search #10, logLikelihood: -30674.680832
[08:00:37 -48099.977661] AUTODETECT spr round 4 (radius: 20)
[08:03:36 -41516.614358] AUTODETECT spr round 5 (radius: 25)
[08:06:34 -37767.747311] SPR radius for FAST iterations: 25 (autodetect)
[08:06:34 -37767.747311] Model parameter optimization (eps = 3.000000)
[08:07:00 -37683.274038] FAST spr round 1 (radius: 25)
[08:09:34 -31470.206904] FAST spr round 2 (radius: 25)
[08:11:41 -31093.073319] FAST spr round 3 (radius: 25)
[08:13:35 -31067.813050] FAST spr round 4 (radius: 25)
[08:15:19 -31066.966759] FAST spr round 5 (radius: 25)
[08:17:01 -31066.543724] FAST spr round 6 (radius: 25)
[08:18:41 -31066.541269] Model parameter optimization (eps = 1.000000)
[08:19:03 -31060.951160] SLOW spr round 1 (radius: 5)
[08:20:55 -31055.580348] SLOW spr round 2 (radius: 5)
[08:22:48 -31052.974037] SLOW spr round 3 (radius: 5)
[08:24:43 -31051.829103] SLOW spr round 4 (radius: 5)
[08:26:36 -31051.372917] SLOW spr round 5 (radius: 5)
[08:28:30 -31051.371702] SLOW spr round 6 (radius: 10)
[08:30:29 -31051.371417] SLOW spr round 7 (radius: 15)
[08:33:07 -31047.449162] SLOW spr round 8 (radius: 5)
[08:35:26 -31045.658966] SLOW spr round 9 (radius: 5)
[08:37:33 -31043.733750] SLOW spr round 10 (radius: 5)
[08:39:31 -31043.732923] SLOW spr round 11 (radius: 10)
[08:41:32 -31043.732878] SLOW spr round 12 (radius: 15)
[08:44:08 -31043.732857] SLOW spr round 13 (radius: 20)
[08:47:12 -31043.732848] SLOW spr round 14 (radius: 25)
[08:51:00 -30898.397937] SLOW spr round 15 (radius: 5)
[08:53:22 -30724.046106] SLOW spr round 16 (radius: 5)
[08:55:31 -30710.312140] SLOW spr round 17 (radius: 5)
[08:57:29 -30710.311580] SLOW spr round 18 (radius: 10)
[08:59:27 -30709.908566] SLOW spr round 19 (radius: 5)
[09:01:34 -30709.908557] SLOW spr round 20 (radius: 10)
[09:03:42 -30709.470377] SLOW spr round 21 (radius: 5)
[09:05:50 -30709.469600] SLOW spr round 22 (radius: 10)
[09:07:57 -30709.469556] SLOW spr round 23 (radius: 15)
[09:10:28 -30709.469551] SLOW spr round 24 (radius: 20)
[09:13:27 -30707.806223] SLOW spr round 25 (radius: 5)
[09:15:44 -30706.277692] SLOW spr round 26 (radius: 5)
[09:17:01] [worker #1] ML tree search #12, logLikelihood: -30670.409366
[09:17:48 -30706.276842] SLOW spr round 27 (radius: 10)
[09:19:54 -30706.276783] SLOW spr round 28 (radius: 15)
[09:22:24 -30706.276776] SLOW spr round 29 (radius: 20)
[09:25:22 -30706.276773] SLOW spr round 30 (radius: 25)
[09:28:53 -30703.270760] SLOW spr round 31 (radius: 5)
[09:31:14 -30702.847988] SLOW spr round 32 (radius: 5)
[09:33:19 -30702.847980] SLOW spr round 33 (radius: 10)
[09:35:25 -30702.847977] SLOW spr round 34 (radius: 15)
[09:37:56 -30702.847975] SLOW spr round 35 (radius: 20)
[09:41:03 -30702.396434] SLOW spr round 36 (radius: 5)
[09:43:20 -30702.394095] SLOW spr round 37 (radius: 10)
[09:45:35 -30701.266229] SLOW spr round 38 (radius: 5)
[09:47:40 -30701.266196] SLOW spr round 39 (radius: 10)
[09:49:46 -30701.266193] SLOW spr round 40 (radius: 15)
[09:52:17 -30701.266190] SLOW spr round 41 (radius: 20)
[09:55:26 -30701.266182] SLOW spr round 42 (radius: 25)
[09:59:04 -30701.266182] Model parameter optimization (eps = 0.100000)

[09:59:22] [worker #0] ML tree search #7, logLikelihood: -30698.046068

[09:59:22 -193498.400558] Initial branch length optimization
[09:59:25 -151445.996838] Model parameter optimization (eps = 10.000000)
[10:00:03 -150920.268505] AUTODETECT spr round 1 (radius: 5)
[10:02:17 -95670.364095] AUTODETECT spr round 2 (radius: 10)
[10:04:44 -65162.149942] AUTODETECT spr round 3 (radius: 15)
[10:07:12 -52915.477231] AUTODETECT spr round 4 (radius: 20)
[10:09:49 -45256.810401] AUTODETECT spr round 5 (radius: 25)
[10:12:47 -42986.010432] SPR radius for FAST iterations: 25 (autodetect)
[10:12:47 -42986.010432] Model parameter optimization (eps = 3.000000)
[10:13:23 -42833.340226] FAST spr round 1 (radius: 25)
[10:15:57 -33894.668268] FAST spr round 2 (radius: 25)
[10:18:10 -31580.012803] FAST spr round 3 (radius: 25)
[10:20:05 -30946.920262] FAST spr round 4 (radius: 25)
[10:21:55 -30887.040800] FAST spr round 5 (radius: 25)
[10:23:40 -30883.395416] FAST spr round 6 (radius: 25)
[10:25:21 -30881.367909] FAST spr round 7 (radius: 25)
[10:27:03 -30880.801387] FAST spr round 8 (radius: 25)
[10:28:44 -30880.800118] Model parameter optimization (eps = 1.000000)
[10:29:04 -30877.664045] SLOW spr round 1 (radius: 5)
[10:30:56 -30860.776330] SLOW spr round 2 (radius: 5)
[10:32:50 -30854.977652] SLOW spr round 3 (radius: 5)
[10:34:43 -30852.110261] SLOW spr round 4 (radius: 5)
[10:36:34 -30852.109381] SLOW spr round 5 (radius: 10)
[10:38:33 -30851.205523] SLOW spr round 6 (radius: 5)
[10:40:42 -30851.203434] SLOW spr round 7 (radius: 10)
[10:42:51 -30848.623910] SLOW spr round 8 (radius: 5)
[10:45:00 -30848.377996] SLOW spr round 9 (radius: 5)
[10:46:59 -30848.376982] SLOW spr round 10 (radius: 10)
[10:48:58 -30848.376958] SLOW spr round 11 (radius: 15)
[10:51:42 -30839.209392] SLOW spr round 12 (radius: 5)
[10:54:02 -30827.182119] SLOW spr round 13 (radius: 5)
[10:56:06 -30827.112185] SLOW spr round 14 (radius: 10)
[10:58:08 -30827.112149] SLOW spr round 15 (radius: 15)
[10:58:47] [worker #1] ML tree search #14, logLikelihood: -31514.195071
[11:00:50 -30823.039088] SLOW spr round 16 (radius: 5)
[11:03:11 -30820.447786] SLOW spr round 17 (radius: 5)
[11:05:14 -30820.443452] SLOW spr round 18 (radius: 10)
[11:07:17 -30820.443280] SLOW spr round 19 (radius: 15)
[11:09:55 -30820.443277] SLOW spr round 20 (radius: 20)
[11:13:22 -30815.986050] SLOW spr round 21 (radius: 5)
[11:15:43 -30809.701208] SLOW spr round 22 (radius: 5)
[11:17:50 -30809.700900] SLOW spr round 23 (radius: 10)
[11:19:57 -30807.814930] SLOW spr round 24 (radius: 5)
[11:22:08 -30807.645622] SLOW spr round 25 (radius: 5)
[11:24:06 -30807.645133] SLOW spr round 26 (radius: 10)
[11:26:05 -30807.645113] SLOW spr round 27 (radius: 15)
[11:28:43 -30807.644997] SLOW spr round 28 (radius: 20)
[11:32:01 -30807.644996] SLOW spr round 29 (radius: 25)
[11:35:46 -30807.301895] SLOW spr round 30 (radius: 5)
[11:38:05 -30807.301699] SLOW spr round 31 (radius: 10)
[11:40:22 -30806.572557] SLOW spr round 32 (radius: 5)
[11:42:29 -30806.572139] SLOW spr round 33 (radius: 10)
[11:44:38 -30805.566124] SLOW spr round 34 (radius: 5)
[11:46:46 -30805.566119] SLOW spr round 35 (radius: 10)
[11:48:54 -30805.566119] SLOW spr round 36 (radius: 15)
[11:51:29 -30805.566119] SLOW spr round 37 (radius: 20)
[11:54:47 -30805.566119] SLOW spr round 38 (radius: 25)
[11:58:33 -30805.566119] Model parameter optimization (eps = 0.100000)

[11:58:50] [worker #0] ML tree search #9, logLikelihood: -30802.090168

[11:58:50 -194543.518283] Initial branch length optimization
[11:58:53 -152140.074005] Model parameter optimization (eps = 10.000000)
[11:59:21 -151524.643125] AUTODETECT spr round 1 (radius: 5)
[12:01:40 -96372.757995] AUTODETECT spr round 2 (radius: 10)
[12:04:11 -65931.575262] AUTODETECT spr round 3 (radius: 15)
[12:06:53 -48857.024744] AUTODETECT spr round 4 (radius: 20)
[12:09:54 -44231.916937] AUTODETECT spr round 5 (radius: 25)
[12:13:09 -40385.816587] SPR radius for FAST iterations: 25 (autodetect)
[12:13:09 -40385.816587] Model parameter optimization (eps = 3.000000)
[12:13:36 -40241.490628] FAST spr round 1 (radius: 25)
[12:16:21 -34246.899607] FAST spr round 2 (radius: 25)
[12:18:44 -33976.759087] FAST spr round 3 (radius: 25)
[12:20:40 -33937.076825] FAST spr round 4 (radius: 25)
[12:22:29 -33936.559922] FAST spr round 5 (radius: 25)
[12:24:16 -33936.557971] Model parameter optimization (eps = 1.000000)
[12:24:33 -33929.258339] SLOW spr round 1 (radius: 5)
[12:26:25 -33914.729193] SLOW spr round 2 (radius: 5)
[12:28:19 -33913.696997] SLOW spr round 3 (radius: 5)
[12:30:14 -33913.695982] SLOW spr round 4 (radius: 10)
[12:32:19 -33908.687094] SLOW spr round 5 (radius: 5)
[12:34:37 -33907.055291] SLOW spr round 6 (radius: 5)
[12:36:43 -33907.054943] SLOW spr round 7 (radius: 10)
[12:38:52 -33905.955683] SLOW spr round 8 (radius: 5)
[12:41:08 -33905.955129] SLOW spr round 9 (radius: 10)
[12:43:24 -33905.954907] SLOW spr round 10 (radius: 15)
[12:46:09 -33903.239962] SLOW spr round 11 (radius: 5)
[12:48:27 -33903.239821] SLOW spr round 12 (radius: 10)
[12:50:43 -33903.239764] SLOW spr round 13 (radius: 15)
[12:53:26 -33903.239711] SLOW spr round 14 (radius: 20)
[12:53:33] [worker #1] ML tree search #16, logLikelihood: -30908.142805
[12:57:05 -33895.114814] SLOW spr round 15 (radius: 5)
[12:59:25 -33895.114696] SLOW spr round 16 (radius: 10)
[13:01:42 -33895.114664] SLOW spr round 17 (radius: 15)
[13:04:26 -33895.114630] SLOW spr round 18 (radius: 20)
[13:08:02 -33895.114612] SLOW spr round 19 (radius: 25)
[13:12:07 -33893.436441] SLOW spr round 20 (radius: 5)
[13:14:30 -33888.290505] SLOW spr round 21 (radius: 5)
[13:16:40 -33888.290481] SLOW spr round 22 (radius: 10)
[13:18:50 -33888.290457] SLOW spr round 23 (radius: 15)
[13:21:34 -33888.290433] SLOW spr round 24 (radius: 20)
[13:25:14 -33888.290417] SLOW spr round 25 (radius: 25)
[13:29:20 -33888.290401] Model parameter optimization (eps = 0.100000)

[13:29:29] [worker #0] ML tree search #11, logLikelihood: -33888.240983

[13:29:29 -193529.525287] Initial branch length optimization
[13:29:32 -151941.299861] Model parameter optimization (eps = 10.000000)
[13:30:06 -151401.121581] AUTODETECT spr round 1 (radius: 5)
[13:32:24 -95198.512010] AUTODETECT spr round 2 (radius: 10)
[13:34:52 -65660.376209] AUTODETECT spr round 3 (radius: 15)
[13:37:35 -50168.072490] AUTODETECT spr round 4 (radius: 20)
[13:40:41 -42077.594217] AUTODETECT spr round 5 (radius: 25)
[13:43:43 -39096.188338] SPR radius for FAST iterations: 25 (autodetect)
[13:43:43 -39096.188338] Model parameter optimization (eps = 3.000000)
[13:44:08 -39035.635951] FAST spr round 1 (radius: 25)
[13:46:45 -31492.379117] FAST spr round 2 (radius: 25)
[13:48:55 -30892.732146] FAST spr round 3 (radius: 25)
[13:50:48 -30713.913414] FAST spr round 4 (radius: 25)
[13:52:35 -30703.494103] FAST spr round 5 (radius: 25)
[13:54:16 -30701.326121] FAST spr round 6 (radius: 25)
[13:55:58 -30701.325973] Model parameter optimization (eps = 1.000000)
[13:56:14 -30694.020471] SLOW spr round 1 (radius: 5)
[13:58:04 -30686.605408] SLOW spr round 2 (radius: 5)
[13:59:55 -30686.579445] SLOW spr round 3 (radius: 10)
[14:01:54 -30686.503143] SLOW spr round 4 (radius: 15)
[14:04:38 -30683.862574] SLOW spr round 5 (radius: 5)
[14:07:00 -30675.973916] SLOW spr round 6 (radius: 5)
[14:09:03 -30675.972959] SLOW spr round 7 (radius: 10)
[14:11:08 -30675.972669] SLOW spr round 8 (radius: 15)
[14:13:48 -30675.972577] SLOW spr round 9 (radius: 20)
[14:17:17 -30674.286841] SLOW spr round 10 (radius: 5)
[14:19:35 -30674.280694] SLOW spr round 11 (radius: 10)
[14:21:51 -30674.280644] SLOW spr round 12 (radius: 15)
[14:24:29 -30674.280644] SLOW spr round 13 (radius: 20)
[14:27:57 -30674.280644] SLOW spr round 14 (radius: 25)
[14:30:36] [worker #1] ML tree search #18, logLikelihood: -31219.702146
[14:32:15 -30674.280644] Model parameter optimization (eps = 0.100000)

[14:32:20] [worker #0] ML tree search #13, logLikelihood: -30674.255764

[14:32:20 -194800.865242] Initial branch length optimization
[14:32:23 -152994.945258] Model parameter optimization (eps = 10.000000)
[14:33:06 -152406.953489] AUTODETECT spr round 1 (radius: 5)
[14:35:27 -99276.374836] AUTODETECT spr round 2 (radius: 10)
[14:37:56 -66310.778293] AUTODETECT spr round 3 (radius: 15)
[14:40:52 -48109.410128] AUTODETECT spr round 4 (radius: 20)
[14:44:00 -38329.528938] AUTODETECT spr round 5 (radius: 25)
[14:47:18 -36264.063392] SPR radius for FAST iterations: 25 (autodetect)
[14:47:18 -36264.063392] Model parameter optimization (eps = 3.000000)
[14:47:43 -36196.721892] FAST spr round 1 (radius: 25)
[14:50:17 -31649.355504] FAST spr round 2 (radius: 25)
[14:52:33 -31095.707741] FAST spr round 3 (radius: 25)
[14:54:34 -30907.968221] FAST spr round 4 (radius: 25)
[14:56:26 -30799.654335] FAST spr round 5 (radius: 25)
[14:58:18 -30771.158089] FAST spr round 6 (radius: 25)
[15:00:06 -30703.809741] FAST spr round 7 (radius: 25)
[15:01:50 -30702.843379] FAST spr round 8 (radius: 25)
[15:03:33 -30702.649280] FAST spr round 9 (radius: 25)
[15:05:16 -30702.649273] Model parameter optimization (eps = 1.000000)
[15:06:09 -30693.250382] SLOW spr round 1 (radius: 5)
[15:07:59 -30680.445246] SLOW spr round 2 (radius: 5)
[15:09:51 -30678.946044] SLOW spr round 3 (radius: 5)
[15:11:44 -30678.414680] SLOW spr round 4 (radius: 5)
[15:13:36 -30678.413987] SLOW spr round 5 (radius: 10)
[15:15:37 -30673.802590] SLOW spr round 6 (radius: 5)
[15:17:49 -30669.189118] SLOW spr round 7 (radius: 5)
[15:19:52 -30666.077774] SLOW spr round 8 (radius: 5)
[15:21:47 -30665.535386] SLOW spr round 9 (radius: 5)
[15:23:38 -30665.534501] SLOW spr round 10 (radius: 10)
[15:25:38 -30665.180345] SLOW spr round 11 (radius: 5)
[15:27:51 -30665.158288] SLOW spr round 12 (radius: 10)
[15:29:58 -30665.055757] SLOW spr round 13 (radius: 5)
[15:32:05 -30665.055338] SLOW spr round 14 (radius: 10)
[15:34:12 -30665.055021] SLOW spr round 15 (radius: 15)
[15:36:52 -30659.514481] SLOW spr round 16 (radius: 5)
[15:39:07 -30659.509030] SLOW spr round 17 (radius: 10)
[15:41:20 -30657.978470] SLOW spr round 18 (radius: 5)
[15:43:29 -30657.199765] SLOW spr round 19 (radius: 5)
[15:45:26 -30657.198919] SLOW spr round 20 (radius: 10)
[15:47:25 -30657.198771] SLOW spr round 21 (radius: 15)
[15:50:04 -30651.492295] SLOW spr round 22 (radius: 5)
[15:52:18 -30651.492112] SLOW spr round 23 (radius: 10)
[15:54:30 -30651.492081] SLOW spr round 24 (radius: 15)
[15:57:07 -30651.491970] SLOW spr round 25 (radius: 20)
[16:00:23 -30650.516060] SLOW spr round 26 (radius: 5)
[16:02:40 -30650.515958] SLOW spr round 27 (radius: 10)
[16:04:54 -30650.515939] SLOW spr round 28 (radius: 15)
[16:07:27 -30650.515932] SLOW spr round 29 (radius: 20)
[16:10:40 -30650.515932] SLOW spr round 30 (radius: 25)
[16:14:25 -30648.402675] SLOW spr round 31 (radius: 5)
[16:16:45 -30648.115820] SLOW spr round 32 (radius: 5)
[16:18:49 -30648.114506] SLOW spr round 33 (radius: 10)
[16:20:53 -30648.114234] SLOW spr round 34 (radius: 15)
[16:23:25 -30648.114172] SLOW spr round 35 (radius: 20)
[16:26:38 -30648.114157] SLOW spr round 36 (radius: 25)
[16:30:23 -30648.114154] Model parameter optimization (eps = 0.100000)

[16:30:34] [worker #0] ML tree search #15, logLikelihood: -30647.497020

[16:30:34 -192493.720566] Initial branch length optimization
[16:30:37 -151676.880167] Model parameter optimization (eps = 10.000000)
[16:31:19 -151159.584272] AUTODETECT spr round 1 (radius: 5)
[16:33:35 -98369.067791] AUTODETECT spr round 2 (radius: 10)
[16:36:04 -66117.647077] AUTODETECT spr round 3 (radius: 15)
[16:38:39 -53074.325851] AUTODETECT spr round 4 (radius: 20)
[16:41:25 -49464.745324] AUTODETECT spr round 5 (radius: 25)
[16:41:37] [worker #1] ML tree search #20, logLikelihood: -31122.903570
[16:44:25 -45926.714885] SPR radius for FAST iterations: 25 (autodetect)
[16:44:25 -45926.714885] Model parameter optimization (eps = 3.000000)
[16:45:01 -45868.113910] FAST spr round 1 (radius: 25)
[16:47:38 -34729.235314] FAST spr round 2 (radius: 25)
[16:49:49 -33808.045593] FAST spr round 3 (radius: 25)
[16:51:46 -33693.121269] FAST spr round 4 (radius: 25)
[16:53:34 -33692.219463] FAST spr round 5 (radius: 25)
[16:55:19 -33692.218925] Model parameter optimization (eps = 1.000000)
[16:55:37 -33686.832115] SLOW spr round 1 (radius: 5)
[16:57:33 -33678.594576] SLOW spr round 2 (radius: 5)
[16:59:28 -33676.582733] SLOW spr round 3 (radius: 5)
[17:01:19 -33676.582436] SLOW spr round 4 (radius: 10)
[17:03:21 -33674.693103] SLOW spr round 5 (radius: 5)
[17:05:36 -33673.609652] SLOW spr round 6 (radius: 5)
[17:07:38 -33673.605203] SLOW spr round 7 (radius: 10)
[17:09:44 -33673.605168] SLOW spr round 8 (radius: 15)
[17:12:25 -33663.587611] SLOW spr round 9 (radius: 5)
[17:14:43 -33662.852105] SLOW spr round 10 (radius: 5)
[17:16:48 -33662.850900] SLOW spr round 11 (radius: 10)
[17:18:56 -33661.486517] SLOW spr round 12 (radius: 5)
[17:21:09 -33659.649943] SLOW spr round 13 (radius: 5)
[17:23:09 -33659.648141] SLOW spr round 14 (radius: 10)
[17:25:11 -33659.648031] SLOW spr round 15 (radius: 15)
[17:27:50 -33659.648025] SLOW spr round 16 (radius: 20)
[17:31:01 -33659.648024] SLOW spr round 17 (radius: 25)
[17:34:48 -33438.412698] SLOW spr round 18 (radius: 5)
[17:37:12 -32439.102121] SLOW spr round 19 (radius: 5)
[17:39:21 -31886.664479] SLOW spr round 20 (radius: 5)
[17:41:24 -31358.616488] SLOW spr round 21 (radius: 5)
[17:43:21 -31090.952107] SLOW spr round 22 (radius: 5)
[17:45:17 -31013.089120] SLOW spr round 23 (radius: 5)
[17:47:11 -30993.810439] SLOW spr round 24 (radius: 5)
[17:49:04 -30993.809880] SLOW spr round 25 (radius: 10)
[17:51:09 -30979.345944] SLOW spr round 26 (radius: 5)
[17:53:23 -30971.932484] SLOW spr round 27 (radius: 5)
[17:55:22 -30971.929276] SLOW spr round 28 (radius: 10)
[17:57:23 -30971.927970] SLOW spr round 29 (radius: 15)
[18:00:06 -30960.965023] SLOW spr round 30 (radius: 5)
[18:02:22 -30959.572397] SLOW spr round 31 (radius: 5)
[18:04:25 -30959.560190] SLOW spr round 32 (radius: 10)
[18:06:30 -30952.430027] SLOW spr round 33 (radius: 5)
[18:08:38 -30952.429996] SLOW spr round 34 (radius: 10)
[18:10:46 -30952.429993] SLOW spr round 35 (radius: 15)
[18:13:27 -30945.403669] SLOW spr round 36 (radius: 5)
[18:15:43 -30945.403594] SLOW spr round 37 (radius: 10)
[18:17:57 -30938.767414] SLOW spr round 38 (radius: 5)
[18:20:06 -30938.767323] SLOW spr round 39 (radius: 10)
[18:22:14 -30938.767323] SLOW spr round 40 (radius: 15)
[18:24:57 -30930.420479] SLOW spr round 41 (radius: 5)
[18:27:14 -30923.799455] SLOW spr round 42 (radius: 5)
[18:29:16 -30923.799454] SLOW spr round 43 (radius: 10)
[18:31:20 -30923.799453] SLOW spr round 44 (radius: 15)
[18:34:01 -30923.799452] SLOW spr round 45 (radius: 20)
[18:37:20 -30918.492270] SLOW spr round 46 (radius: 5)
[18:39:40 -30915.918669] SLOW spr round 47 (radius: 5)
[18:41:45 -30915.918222] SLOW spr round 48 (radius: 10)
[18:43:53 -30915.918189] SLOW spr round 49 (radius: 15)
[18:46:34 -30915.918185] SLOW spr round 50 (radius: 20)
[18:49:53 -30915.918184] SLOW spr round 51 (radius: 25)
[18:53:43 -30914.395360] SLOW spr round 52 (radius: 5)
[18:56:04 -30914.344856] SLOW spr round 53 (radius: 10)
[18:58:22 -30914.344293] SLOW spr round 54 (radius: 15)
[19:01:02 -30914.344269] SLOW spr round 55 (radius: 20)
[19:04:20 -30914.344267] SLOW spr round 56 (radius: 25)
[19:08:10 -30914.344266] Model parameter optimization (eps = 0.100000)

[19:08:31] [worker #0] ML tree search #17, logLikelihood: -30909.266898

[19:08:31 -192539.411684] Initial branch length optimization
[19:08:33 -150172.066366] Model parameter optimization (eps = 10.000000)
[19:09:08 -149565.133065] AUTODETECT spr round 1 (radius: 5)
[19:11:27 -98842.323290] AUTODETECT spr round 2 (radius: 10)
[19:13:50 -68428.036195] AUTODETECT spr round 3 (radius: 15)
[19:16:23 -53261.070094] AUTODETECT spr round 4 (radius: 20)
[19:19:12 -44999.144281] AUTODETECT spr round 5 (radius: 25)
[19:22:26 -39854.580342] SPR radius for FAST iterations: 25 (autodetect)
[19:22:26 -39854.580342] Model parameter optimization (eps = 3.000000)
[19:23:21 -39757.464996] FAST spr round 1 (radius: 25)
[19:26:05 -31798.330622] FAST spr round 2 (radius: 25)
[19:28:23 -30973.939653] FAST spr round 3 (radius: 25)
[19:30:24 -30899.907512] FAST spr round 4 (radius: 25)
[19:32:13 -30874.661577] FAST spr round 5 (radius: 25)
[19:34:01 -30874.661193] Model parameter optimization (eps = 1.000000)
[19:34:18 -30870.412469] SLOW spr round 1 (radius: 5)
[19:36:14 -30866.066165] SLOW spr round 2 (radius: 5)
[19:38:10 -30865.711654] SLOW spr round 3 (radius: 5)
[19:40:05 -30865.700206] SLOW spr round 4 (radius: 10)
[19:42:12 -30859.765517] SLOW spr round 5 (radius: 5)
[19:44:27 -30854.778368] SLOW spr round 6 (radius: 5)
[19:46:33 -30854.776132] SLOW spr round 7 (radius: 10)
[19:48:40 -30854.775563] SLOW spr round 8 (radius: 15)
[19:51:20 -30841.684530] SLOW spr round 9 (radius: 5)
[19:53:44 -30838.803877] SLOW spr round 10 (radius: 5)
[19:55:50 -30838.712953] SLOW spr round 11 (radius: 10)
[19:57:58 -30837.415246] SLOW spr round 12 (radius: 5)
[20:00:11 -30836.716340] SLOW spr round 13 (radius: 5)
[20:02:11 -30836.716281] SLOW spr round 14 (radius: 10)
[20:04:15 -30836.716268] SLOW spr round 15 (radius: 15)
[20:06:53 -30836.264774] SLOW spr round 16 (radius: 5)
[20:09:12 -30835.816116] SLOW spr round 17 (radius: 5)
[20:11:19 -30835.815912] SLOW spr round 18 (radius: 10)
[20:13:26 -30835.815878] SLOW spr round 19 (radius: 15)
[20:16:02 -30835.815861] SLOW spr round 20 (radius: 20)
[20:19:15 -30832.657544] SLOW spr round 21 (radius: 5)
[20:21:38 -30832.482145] SLOW spr round 22 (radius: 5)
[20:23:45 -30832.480148] SLOW spr round 23 (radius: 10)
[20:25:51 -30832.479613] SLOW spr round 24 (radius: 15)
[20:28:25 -30832.479488] SLOW spr round 25 (radius: 20)
[20:31:37 -30832.479460] SLOW spr round 26 (radius: 25)
[20:35:13 -30830.431613] SLOW spr round 27 (radius: 5)
[20:37:35 -30809.023201] SLOW spr round 28 (radius: 5)
[20:39:43 -30809.023089] SLOW spr round 29 (radius: 10)
[20:41:50 -30809.023072] SLOW spr round 30 (radius: 15)
[20:44:30 -30799.324993] SLOW spr round 31 (radius: 5)
[20:46:48 -30799.207836] SLOW spr round 32 (radius: 5)
[20:48:53 -30799.204563] SLOW spr round 33 (radius: 10)
[20:50:59 -30799.202945] SLOW spr round 34 (radius: 15)
[20:53:33 -30799.202153] SLOW spr round 35 (radius: 20)
[20:56:40 -30799.201771] SLOW spr round 36 (radius: 25)
[21:00:12 -30796.480873] SLOW spr round 37 (radius: 5)
[21:02:35 -30796.450502] SLOW spr round 38 (radius: 10)
[21:04:51 -30796.450410] SLOW spr round 39 (radius: 15)
[21:07:22 -30796.450382] SLOW spr round 40 (radius: 20)
[21:10:30 -30796.450368] SLOW spr round 41 (radius: 25)
[21:13:58 -30796.450363] Model parameter optimization (eps = 0.100000)

[21:14:10] [worker #0] ML tree search #19, logLikelihood: -30795.524456


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.148933,0.306139) (0.134315,0.643423) (0.515099,0.952467) (0.201653,1.871377) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -30647.497020

AIC score: 65276.994041 / AICc score: 7997420.994041 / BIC score: 70810.228916
Free parameters (model + branch lengths): 1991

WARNING: Number of free parameters (K=1991) is larger than alignment size (n=119).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H165/3_mltree/Q9H165.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H165/3_mltree/Q9H165.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H165/3_mltree/Q9H165.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H165/3_mltree/Q9H165.raxml.log

Analysis started: 03-Jul-2021 01:55:16 / finished: 03-Jul-2021 23:09:27

Elapsed time: 76450.241 seconds

Consumed energy: 5013.734 Wh (= 25 km in an electric car, or 125 km with an e-scooter!)