RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 02-Jun-2021 17:58:00 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H161/2_msa/Q9H161_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H161/3_mltree/Q9H161.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H161/4_raxmlng_ancestral/Q9H161 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622645880 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H161/2_msa/Q9H161_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 411 sites WARNING: Sequences tr_B4Q632_B4Q632_DROSI_7240 and tr_B4ICW1_B4ICW1_DROSE_7238 are exactly identical! WARNING: Sequences tr_Q5I7G4_Q5I7G4_DANRE_7955 and tr_A0A3B1K9U3_A0A3B1K9U3_ASTMX_7994 are exactly identical! WARNING: Sequences tr_E1C143_E1C143_CHICK_9031 and tr_A0A0Q3USG1_A0A0Q3USG1_AMAAE_12930 are exactly identical! WARNING: Sequences tr_E1C143_E1C143_CHICK_9031 and tr_A0A091JC58_A0A091JC58_EGRGA_188379 are exactly identical! WARNING: Sequences tr_E1C143_E1C143_CHICK_9031 and tr_A0A093PK69_A0A093PK69_9PASS_328815 are exactly identical! WARNING: Sequences tr_E1C143_E1C143_CHICK_9031 and tr_A0A091VLX1_A0A091VLX1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1C143_E1C143_CHICK_9031 and tr_A0A087QYX0_A0A087QYX0_APTFO_9233 are exactly identical! WARNING: Sequences tr_E1C143_E1C143_CHICK_9031 and tr_A0A091V4Q3_A0A091V4Q3_OPIHO_30419 are exactly identical! WARNING: Sequences tr_E1C143_E1C143_CHICK_9031 and tr_A0A0A0AQY1_A0A0A0AQY1_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E1C143_E1C143_CHICK_9031 and tr_A0A226MXB2_A0A226MXB2_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1C143_E1C143_CHICK_9031 and tr_A0A226P636_A0A226P636_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q9PVY0_RX1_CHICK_9031 and tr_G1MQF6_G1MQF6_MELGA_9103 are exactly identical! WARNING: Sequences sp_Q9PVY0_RX1_CHICK_9031 and tr_A0A226MXA1_A0A226MXA1_CALSU_9009 are exactly identical! WARNING: Sequences sp_Q8C8B0_ALX1_MOUSE_10090 and tr_A0A1U7QI75_A0A1U7QI75_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YCW7_M3YCW7_MUSPF_9669 and tr_G1LV28_G1LV28_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YCW7_M3YCW7_MUSPF_9669 and tr_A0A337S2S1_A0A337S2S1_FELCA_9685 are exactly identical! WARNING: Sequences tr_B4JDS0_B4JDS0_DROGR_7222 and tr_B4K0N7_B4K0N7_DROGR_7222 are exactly identical! WARNING: Sequences tr_A0A2I3H9V9_A0A2I3H9V9_NOMLE_61853 and tr_H2NAB9_H2NAB9_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3H9V9_A0A2I3H9V9_NOMLE_61853 and tr_F6QW98_F6QW98_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3H9V9_A0A2I3H9V9_NOMLE_61853 and tr_A0A0D9RDG3_A0A0D9RDG3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3H9V9_A0A2I3H9V9_NOMLE_61853 and tr_A0A2K5KHQ6_A0A2K5KHQ6_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3H9V9_A0A2I3H9V9_NOMLE_61853 and tr_A0A2K6DZR8_A0A2K6DZR8_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3H9V9_A0A2I3H9V9_NOMLE_61853 and tr_A0A2K5XDC0_A0A2K5XDC0_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QZZ6_G1QZZ6_NOMLE_61853 and tr_H2NI70_H2NI70_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QD58_G3QD58_GORGO_9595 and tr_H2Q6K1_H2Q6K1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QD58_G3QD58_GORGO_9595 and sp_Q15699_ALX1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QD58_G3QD58_GORGO_9595 and tr_A0A2R9B0M3_A0A2R9B0M3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QN78_G3QN78_GORGO_9595 and tr_H2PZM0_H2PZM0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QN78_G3QN78_GORGO_9595 and sp_O95076_ALX3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QYQ5_G3QYQ5_GORGO_9595 and tr_A0A2J8JGN7_A0A2J8JGN7_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QYQ5_G3QYQ5_GORGO_9595 and tr_A0A2R8ZN19_A0A2R8ZN19_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1N5L3_G1N5L3_MELGA_9103 and tr_A0A2I0MFC7_A0A2I0MFC7_COLLI_8932 are exactly identical! WARNING: Sequences tr_G1N5L3_G1N5L3_MELGA_9103 and tr_A0A1V4KJ63_A0A1V4KJ63_PATFA_372326 are exactly identical! WARNING: Sequences tr_F6VW17_F6VW17_HORSE_9796 and tr_G3TBH5_G3TBH5_LOXAF_9785 are exactly identical! WARNING: Sequences tr_F6VW17_F6VW17_HORSE_9796 and tr_L5JU17_L5JU17_PTEAL_9402 are exactly identical! WARNING: Sequences tr_W5NV96_W5NV96_SHEEP_9940 and tr_E1BDA0_E1BDA0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5Q1B1_W5Q1B1_SHEEP_9940 and tr_E1BKK2_E1BKK2_BOVIN_9913 are exactly identical! WARNING: Sequences sp_A6YP92_ARX_RAT_10116 and tr_A0A1U8CC06_A0A1U8CC06_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A3B5Q688_A0A3B5Q688_XIPMA_8083 and tr_A0A087YKF0_A0A087YKF0_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QAU1_A0A3B5QAU1_XIPMA_8083 and tr_A0A087XT14_A0A087XT14_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088AMF9_A0A088AMF9_APIME_7460 and tr_A0A2A3EH84_A0A2A3EH84_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158P0P0_A0A158P0P0_ATTCE_12957 and tr_A0A195B1D4_A0A195B1D4_9HYME_520822 are exactly identical! WARNING: Sequences tr_I3NDR7_I3NDR7_ICTTR_43179 and tr_A0A2Y9EA01_A0A2Y9EA01_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H2T173_H2T173_TAKRU_31033 and tr_Q4S3X1_Q4S3X1_TETNG_99883 are exactly identical! WARNING: Sequences sp_Q99453_PHX2B_HUMAN_9606 and tr_A0A096NPT4_A0A096NPT4_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q99453_PHX2B_HUMAN_9606 and tr_A0A0D9RWY9_A0A0D9RWY9_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q99453_PHX2B_HUMAN_9606 and tr_A0A2K6BFM4_A0A2K6BFM4_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6YCG6_F6YCG6_MACMU_9544 and tr_G7PYK7_G7PYK7_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6YCG6_F6YCG6_MACMU_9544 and tr_A0A0A0MW01_A0A0A0MW01_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6YCG6_F6YCG6_MACMU_9544 and tr_A0A2K5MZL8_A0A2K5MZL8_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6YCG6_F6YCG6_MACMU_9544 and tr_A0A2K6CA27_A0A2K6CA27_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6YCG6_F6YCG6_MACMU_9544 and tr_A0A2K5YMP4_A0A2K5YMP4_MANLE_9568 are exactly identical! WARNING: Sequences tr_H0YRH0_H0YRH0_TAEGU_59729 and tr_A0A087QMY0_A0A087QMY0_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A2R8N850_A0A2R8N850_CALJA_9483 and tr_A0A286ZPC4_A0A286ZPC4_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A2R8N850_A0A2R8N850_CALJA_9483 and tr_A0A337RWL0_A0A337RWL0_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A2R8N850_A0A2R8N850_CALJA_9483 and tr_A0A2Y9JS14_A0A2Y9JS14_ENHLU_391180 are exactly identical! WARNING: Sequences tr_D2HVJ0_D2HVJ0_AILME_9646 and tr_A0A384BUQ0_A0A384BUQ0_URSMA_29073 are exactly identical! WARNING: Sequences tr_G7PIK8_G7PIK8_MACFA_9541 and tr_A0A096MXS2_A0A096MXS2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7PIK8_G7PIK8_MACFA_9541 and tr_A0A0D9QV21_A0A0D9QV21_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G7PIK8_G7PIK8_MACFA_9541 and tr_A0A2K5NLC8_A0A2K5NLC8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7PIK8_G7PIK8_MACFA_9541 and tr_A0A2K6CG92_A0A2K6CG92_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7PIK8_G7PIK8_MACFA_9541 and tr_A0A2K5YFN0_A0A2K5YFN0_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A044R227_A0A044R227_ONCVO_6282 and tr_A0A182E8C1_A0A182E8C1_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A096NH47_A0A096NH47_PAPAN_9555 and tr_A0A2K5MU88_A0A2K5MU88_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NH47_A0A096NH47_PAPAN_9555 and tr_A0A2K5YZ09_A0A2K5YZ09_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0D9RPA5_A0A0D9RPA5_CHLSB_60711 and tr_A0A2K5LYS0_A0A2K5LYS0_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0D9RPA5_A0A0D9RPA5_CHLSB_60711 and tr_A0A2K6DJD2_A0A2K6DJD2_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A151LYQ9_A0A151LYQ9_ALLMI_8496 and tr_A0A1U7S7Z5_A0A1U7S7Z5_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151PGF6_A0A151PGF6_ALLMI_8496 and tr_A0A093HCM2_A0A093HCM2_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A151PGF6_A0A151PGF6_ALLMI_8496 and tr_A0A3Q0H3G9_A0A3Q0H3G9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091F0W8_A0A091F0W8_CORBR_85066 and tr_A0A091J9V4_A0A091J9V4_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A091F0W8_A0A091F0W8_CORBR_85066 and tr_A0A091VLU5_A0A091VLU5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091F0W8_A0A091F0W8_CORBR_85066 and tr_A0A093HBJ4_A0A093HBJ4_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091F0W8_A0A091F0W8_CORBR_85066 and tr_A0A0A0AXJ7_A0A0A0AXJ7_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A194RH77_A0A194RH77_PAPMA_76193 and tr_A0A194Q8Y0_A0A194Q8Y0_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A091UNZ2_A0A091UNZ2_NIPNI_128390 and tr_A0A091WS91_A0A091WS91_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091UNZ2_A0A091UNZ2_NIPNI_128390 and tr_A0A093GFW3_A0A093GFW3_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A087QPB4_A0A087QPB4_APTFO_9233 and tr_A0A093GMA0_A0A093GMA0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A2I0LTL8_A0A2I0LTL8_COLLI_8932 and tr_A0A1V4KPR7_A0A1V4KPR7_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V1CS45_A0A0V1CS45_TRIBR_45882 and tr_A0A0V0VUR5_A0A0V0VUR5_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CS45_A0A0V1CS45_TRIBR_45882 and tr_A0A0V1P0P5_A0A0V1P0P5_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A1S3RR13_A0A1S3RR13_SALSA_8030 and tr_A0A060YC01_A0A060YC01_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MZT8_A0A226MZT8_CALSU_9009 and tr_A0A226PBN4_A0A226PBN4_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226N5U7_A0A226N5U7_CALSU_9009 and tr_A0A226P0L8_A0A226P0L8_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0QQP4_A0A2D0QQP4_ICTPU_7998 and tr_A0A2D0QT11_A0A2D0QT11_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U3V4Y4_A0A2U3V4Y4_TURTR_9739 and tr_A0A2Y9FWZ2_A0A2Y9FWZ2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3V4Y4_A0A2U3V4Y4_TURTR_9739 and tr_A0A383ZUH6_A0A383ZUH6_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U3V8G0_A0A2U3V8G0_TURTR_9739 and tr_A0A2Y9LER6_A0A2Y9LER6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V8G0_A0A2U3V8G0_TURTR_9739 and tr_A0A2Y9F3H7_A0A2Y9F3H7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3V8G0_A0A2U3V8G0_TURTR_9739 and tr_A0A383YSY1_A0A383YSY1_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4A2T9_A0A2U4A2T9_TURTR_9739 and tr_A0A2Y9P0U9_A0A2Y9P0U9_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4A2T9_A0A2U4A2T9_TURTR_9739 and tr_A0A2Y9SD92_A0A2Y9SD92_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 92 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H161/4_raxmlng_ancestral/Q9H161.raxml.reduced.phy Alignment comprises 1 partitions and 411 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 411 Gaps: 49.52 % Invariant sites: 0.49 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H161/4_raxmlng_ancestral/Q9H161.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H161/3_mltree/Q9H161.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 103 / 8240 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -104606.418341 [00:00:00 -104606.418341] Initial branch length optimization [00:00:01 -98778.989637] Model parameter optimization (eps = 0.100000) [00:00:32] Tree #1, final logLikelihood: -98555.475172 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.069082,0.068124) (0.077206,0.102624) (0.177078,0.545123) (0.676634,1.316577) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H161/4_raxmlng_ancestral/Q9H161.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H161/4_raxmlng_ancestral/Q9H161.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H161/4_raxmlng_ancestral/Q9H161.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9H161/4_raxmlng_ancestral/Q9H161.raxml.log Analysis started: 02-Jun-2021 17:58:00 / finished: 02-Jun-2021 17:58:37 Elapsed time: 37.192 seconds Consumed energy: 2.933 Wh