RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 06-Jul-2021 17:25:00 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H0J4/2_msa/Q9H0J4_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H0J4/3_mltree/Q9H0J4 --seed 2 --threads 1 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), NONE/sequential

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H0J4/2_msa/Q9H0J4_trimmed_msa.fasta
[00:00:00] Loaded alignment with 272 taxa and 5 sites

WARNING: Sequences tr_B4QAR1_B4QAR1_DROSI_7240 and tr_Q7K533_Q7K533_DROME_7227 are exactly identical!
WARNING: Sequences tr_B4QAR1_B4QAR1_DROSI_7240 and tr_B4HMI9_B4HMI9_DROSE_7238 are exactly identical!
WARNING: Sequences tr_A0A1L1RLY2_A0A1L1RLY2_CHICK_9031 and tr_G1MW54_G1MW54_MELGA_9103 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_M3YPZ7_M3YPZ7_MUSPF_9669 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_G1QNZ8_G1QNZ8_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_G1P089_G1P089_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_G3R858_G3R858_GORGO_9595 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_H2NUT2_H2NUT2_PONAB_9601 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_G1TG79_G1TG79_RABIT_9986 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_J9P087_J9P087_CANLF_9615 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_H2QDX8_H2QDX8_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_W5PCK5_W5PCK5_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_D3ZG97_D3ZG97_RAT_10116 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_I3MTN6_I3MTN6_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_H0V4I5_H0V4I5_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and sp_Q9H0J4_QRIC2_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_F7EXS7_F7EXS7_MACMU_9544 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_G5AQV2_G5AQV2_HETGA_10181 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_G3T9Y4_G3T9Y4_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_G7PSV5_G7PSV5_MACFA_9541 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_F1MJ07_F1MJ07_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_L5KLB5_L5KLB5_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_A0A096NT34_A0A096NT34_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_A0A091DX43_A0A091DX43_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_A0A0D9QY99_A0A0D9QY99_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_A0A1S3AKU1_A0A1S3AKU1_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_A0A1S3GV98_A0A1S3GV98_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_A0A3Q0ED50_A0A3Q0ED50_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_A0A3Q0CPW1_A0A3Q0CPW1_MESAU_10036 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_A0A2K5LYK2_A0A2K5LYK2_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_A0A2K6B6V1_A0A2K6B6V1_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_A0A2K5XFS6_A0A2K5XFS6_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_A0A2R9AGW4_A0A2R9AGW4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_A0A2U4BMK2_A0A2U4BMK2_TURTR_9739 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_A0A2U3VHZ6_A0A2U3VHZ6_ODORO_9708 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_A0A2U3X9K5_A0A2U3X9K5_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_A0A2Y9QV20_A0A2Y9QV20_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_A0A2Y9KXW8_A0A2Y9KXW8_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_A0A2Y9PQT7_A0A2Y9PQT7_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_A0A2Y9T6N8_A0A2Y9T6N8_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A140LIY9_A0A140LIY9_MOUSE_10090 and tr_A0A384AFC8_A0A384AFC8_BALAS_310752 are exactly identical!
WARNING: Sequences tr_Q6PFF0_Q6PFF0_MOUSE_10090 and tr_G3GT31_G3GT31_CRIGR_10029 are exactly identical!
WARNING: Sequences tr_M3XS49_M3XS49_MUSPF_9669 and tr_A0A2Y9IJG8_A0A2Y9IJG8_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YPZ5_M3YPZ5_MUSPF_9669 and tr_W4XQ23_W4XQ23_STRPU_7668 are exactly identical!
WARNING: Sequences tr_B4K480_B4K480_DROGR_7222 and tr_A0A093G0S4_A0A093G0S4_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_H9HA41_H9HA41_NOMLE_61853 and tr_G3RJP2_G3RJP2_GORGO_9595 are exactly identical!
WARNING: Sequences tr_H9HA41_H9HA41_NOMLE_61853 and tr_H2PW57_H2PW57_PONAB_9601 are exactly identical!
WARNING: Sequences tr_H9HA41_H9HA41_NOMLE_61853 and tr_H2QYV1_H2QYV1_PANTR_9598 are exactly identical!
WARNING: Sequences tr_H9HA41_H9HA41_NOMLE_61853 and tr_F6ZPE9_F6ZPE9_HORSE_9796 are exactly identical!
WARNING: Sequences tr_H9HA41_H9HA41_NOMLE_61853 and sp_Q86VE3_SATL1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H9HA41_H9HA41_NOMLE_61853 and tr_G7Q359_G7Q359_MACFA_9541 are exactly identical!
WARNING: Sequences tr_H9HA41_H9HA41_NOMLE_61853 and tr_A0A0D9RDR9_A0A0D9RDR9_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_H9HA41_H9HA41_NOMLE_61853 and tr_A0A2K5LDR8_A0A2K5LDR8_CERAT_9531 are exactly identical!
WARNING: Sequences tr_H9HA41_H9HA41_NOMLE_61853 and tr_A0A2K5XDS9_A0A2K5XDS9_MANLE_9568 are exactly identical!
WARNING: Sequences tr_H9HA41_H9HA41_NOMLE_61853 and tr_A0A2R9B1R2_A0A2R9B1R2_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1KHI1_G1KHI1_ANOCA_28377 and tr_K7F3F6_K7F3F6_PELSI_13735 are exactly identical!
WARNING: Sequences tr_H2RAD9_H2RAD9_PANTR_9598 and sp_A6NNT2_CP096_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2RAD9_H2RAD9_PANTR_9598 and tr_A0A2R9BIV7_A0A2R9BIV7_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F6VHW9_F6VHW9_ORNAN_9258 and tr_F7B0X4_F7B0X4_MONDO_13616 are exactly identical!
WARNING: Sequences tr_F6VHW9_F6VHW9_ORNAN_9258 and tr_G3WW46_G3WW46_SARHA_9305 are exactly identical!
WARNING: Sequences tr_F6VHW9_F6VHW9_ORNAN_9258 and tr_A0A093HGA6_A0A093HGA6_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A0A3B5QKI2_A0A3B5QKI2_XIPMA_8083 and tr_A0A096MCY4_A0A096MCY4_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B5QNZ4_A0A3B5QNZ4_XIPMA_8083 and tr_A0A3B5R1Y5_A0A3B5R1Y5_XIPMA_8083 are exactly identical!
WARNING: Sequences tr_F7ADG9_F7ADG9_MACMU_9544 and tr_G7Q0E4_G7Q0E4_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7ADG9_F7ADG9_MACMU_9544 and tr_A0A096NLF4_A0A096NLF4_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F7ADG9_F7ADG9_MACMU_9544 and tr_A0A2K6BWN9_A0A2K6BWN9_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7ADG9_F7ADG9_MACMU_9544 and tr_A0A2K6AB92_A0A2K6AB92_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A1B8XSN3_A0A1B8XSN3_XENTR_8364 and tr_A0A1B8Y1S7_A0A1B8Y1S7_XENTR_8364 are exactly identical!
WARNING: Sequences tr_I3LJP1_I3LJP1_PIG_9823 and tr_A0A2D0RXL8_A0A2D0RXL8_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_G1L1V0_G1L1V0_AILME_9646 and tr_A0A2U3ZNG4_A0A2U3ZNG4_ODORO_9708 are exactly identical!
WARNING: Sequences tr_U3J9K0_U3J9K0_ANAPL_8839 and tr_A0A210QVG2_A0A210QVG2_MIZYE_6573 are exactly identical!
WARNING: Sequences tr_A0A3B6NTN0_A0A3B6NTN0_WHEAT_4565 and tr_V3ZGV5_V3ZGV5_LOTGI_225164 are exactly identical!
WARNING: Sequences tr_A0A0L7LHW7_A0A0L7LHW7_9NEOP_104452 and tr_A0A194R5X3_A0A194R5X3_PAPMA_76193 are exactly identical!
WARNING: Sequences tr_A0A0L7LHW7_A0A0L7LHW7_9NEOP_104452 and tr_A0A194Q4R0_A0A194Q4R0_PAPXU_66420 are exactly identical!
WARNING: Sequences tr_A0A151N352_A0A151N352_ALLMI_8496 and tr_A0A3Q0G0W0_A0A3Q0G0W0_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151NGL7_A0A151NGL7_ALLMI_8496 and tr_A0A3Q0FNY4_A0A3Q0FNY4_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A0Q3TA31_A0A0Q3TA31_AMAAE_12930 and tr_A0A093I4P2_A0A093I4P2_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A0A091E976_A0A091E976_CORBR_85066 and tr_A0A091EBI9_A0A091EBI9_CORBR_85066 are exactly identical!
WARNING: Sequences tr_A0A091ENU8_A0A091ENU8_CORBR_85066 and tr_A0A091FL06_A0A091FL06_CORBR_85066 are exactly identical!
WARNING: Sequences tr_A0A091ENU8_A0A091ENU8_CORBR_85066 and tr_A0A093JIQ7_A0A093JIQ7_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A0A091ENU8_A0A091ENU8_CORBR_85066 and tr_A0A093FZ38_A0A093FZ38_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_A0A026VZY3_A0A026VZY3_OOCBI_2015173 and tr_A0A151WW57_A0A151WW57_9HYME_64791 are exactly identical!
WARNING: Sequences tr_A0A091J258_A0A091J258_EGRGA_188379 and tr_A0A091URR2_A0A091URR2_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A091J258_A0A091J258_EGRGA_188379 and tr_A0A087R2G1_A0A087R2G1_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A093PRR3_A0A093PRR3_9PASS_328815 and tr_A0A218VAY6_A0A218VAY6_9PASE_299123 are exactly identical!
WARNING: Sequences tr_A0A091VRT9_A0A091VRT9_NIPNI_128390 and tr_A0A091WVL3_A0A091WVL3_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A091GZS7_A0A091GZS7_9AVES_55661 and tr_A0A0A0AA53_A0A0A0AA53_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A0V1DGR5_A0A0V1DGR5_TRIBR_45882 and tr_A0A0V0V0Q9_A0A0V0V0Q9_9BILA_181606 are exactly identical!
WARNING: Sequences tr_A0A0V1DGR5_A0A0V1DGR5_TRIBR_45882 and tr_A0A0V1NIE1_A0A0V1NIE1_9BILA_92180 are exactly identical!
WARNING: Sequences tr_A0A0V1DGR5_A0A0V1DGR5_TRIBR_45882 and tr_A0A0V0TEH0_A0A0V0TEH0_9BILA_144512 are exactly identical!
WARNING: Sequences tr_A0A1S3RAU4_A0A1S3RAU4_SALSA_8030 and tr_A0A1S3S3X5_A0A1S3S3X5_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A2I4AI83_A0A2I4AI83_9TELE_52670 and tr_A0A2I4ALE2_A0A2I4ALE2_9TELE_52670 are exactly identical!
WARNING: Sequences tr_A0A226MR99_A0A226MR99_CALSU_9009 and tr_A0A226PP35_A0A226PP35_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A367XTA2_A0A367XTA2_9ASCO_5486 and tr_A0A367Y4D3_A0A367Y4D3_9ASCO_5486 are exactly identical!
WARNING: Duplicate sequences found: 94

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H0J4/3_mltree/Q9H0J4.raxml.reduced.phy

Alignment comprises 1 partitions and 5 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 5 / 5
Gaps: 2.13 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H0J4/3_mltree/Q9H0J4.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 272 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 5 / 400
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -3603.953753] Initial branch length optimization
[00:00:00 -2810.896072] Model parameter optimization (eps = 10.000000)
[00:00:01 -2778.962846] AUTODETECT spr round 1 (radius: 5)
[00:00:04 -2295.486847] AUTODETECT spr round 2 (radius: 10)
[00:00:07 -1912.712459] AUTODETECT spr round 3 (radius: 15)
[00:00:11 -1762.177605] AUTODETECT spr round 4 (radius: 20)
[00:00:15 -1684.063433] AUTODETECT spr round 5 (radius: 25)
[00:00:18 -1611.417059] SPR radius for FAST iterations: 25 (autodetect)
[00:00:18 -1611.417059] Model parameter optimization (eps = 3.000000)
[00:00:19 -1610.783614] FAST spr round 1 (radius: 25)
[00:00:22 -1468.220845] FAST spr round 2 (radius: 25)
[00:00:25 -1457.436397] FAST spr round 3 (radius: 25)
[00:00:28 -1454.042520] FAST spr round 4 (radius: 25)
[00:00:31 -1454.040146] Model parameter optimization (eps = 1.000000)
[00:00:32 -1454.037251] SLOW spr round 1 (radius: 5)
[00:00:35 -1449.990943] SLOW spr round 2 (radius: 5)
[00:00:39 -1449.989488] SLOW spr round 3 (radius: 10)
[00:00:42 -1445.940265] SLOW spr round 4 (radius: 5)
[00:00:46 -1445.546185] SLOW spr round 5 (radius: 5)
[00:00:50 -1445.544321] SLOW spr round 6 (radius: 10)
[00:00:54 -1445.543348] SLOW spr round 7 (radius: 15)
[00:00:58 -1434.073719] SLOW spr round 8 (radius: 5)
[00:01:03 -1432.365500] SLOW spr round 9 (radius: 5)
[00:01:07 -1432.365497] SLOW spr round 10 (radius: 10)
[00:01:10 -1432.365497] SLOW spr round 11 (radius: 15)
[00:01:15 -1427.629241] SLOW spr round 12 (radius: 5)
[00:01:20 -1427.542258] SLOW spr round 13 (radius: 10)
[00:01:23 -1427.542187] SLOW spr round 14 (radius: 15)
[00:01:28 -1427.542184] SLOW spr round 15 (radius: 20)
[00:01:34 -1425.024669] SLOW spr round 16 (radius: 5)
[00:01:38 -1423.655189] SLOW spr round 17 (radius: 5)
[00:01:42 -1423.654408] SLOW spr round 18 (radius: 10)
[00:01:46 -1423.654320] SLOW spr round 19 (radius: 15)
[00:01:51 -1423.654311] SLOW spr round 20 (radius: 20)
[00:01:56 -1423.628911] SLOW spr round 21 (radius: 25)
[00:02:02 -1423.628911] Model parameter optimization (eps = 0.100000)

[00:02:02] ML tree search #1, logLikelihood: -1423.554207

[00:02:02 -3655.474690] Initial branch length optimization
[00:02:02 -2841.066488] Model parameter optimization (eps = 10.000000)
[00:02:03 -2800.814936] AUTODETECT spr round 1 (radius: 5)
[00:02:06 -2291.150151] AUTODETECT spr round 2 (radius: 10)
[00:02:09 -1966.590740] AUTODETECT spr round 3 (radius: 15)
[00:02:13 -1782.861277] AUTODETECT spr round 4 (radius: 20)
[00:02:16 -1703.846449] AUTODETECT spr round 5 (radius: 25)
[00:02:20 -1635.892483] SPR radius for FAST iterations: 25 (autodetect)
[00:02:20 -1635.892483] Model parameter optimization (eps = 3.000000)
[00:02:20 -1633.012671] FAST spr round 1 (radius: 25)
[00:02:23 -1504.821015] FAST spr round 2 (radius: 25)
[00:02:27 -1470.303086] FAST spr round 3 (radius: 25)
[00:02:30 -1468.662253] FAST spr round 4 (radius: 25)
[00:02:32 -1466.328547] FAST spr round 5 (radius: 25)
[00:02:35 -1465.973549] FAST spr round 6 (radius: 25)
[00:02:38 -1465.973169] Model parameter optimization (eps = 1.000000)
[00:02:39 -1465.946706] SLOW spr round 1 (radius: 5)
[00:02:42 -1463.699013] SLOW spr round 2 (radius: 5)
[00:02:46 -1460.143516] SLOW spr round 3 (radius: 5)
[00:02:49 -1460.143479] SLOW spr round 4 (radius: 10)
[00:02:53 -1459.329548] SLOW spr round 5 (radius: 5)
[00:02:57 -1459.329261] SLOW spr round 6 (radius: 10)
[00:03:01 -1451.875781] SLOW spr round 7 (radius: 5)
[00:03:05 -1451.875304] SLOW spr round 8 (radius: 10)
[00:03:09 -1451.875259] SLOW spr round 9 (radius: 15)
[00:03:13 -1443.601409] SLOW spr round 10 (radius: 5)
[00:03:18 -1431.842366] SLOW spr round 11 (radius: 5)
[00:03:22 -1431.841857] SLOW spr round 12 (radius: 10)
[00:03:25 -1431.597624] SLOW spr round 13 (radius: 5)
[00:03:30 -1431.597622] SLOW spr round 14 (radius: 10)
[00:03:33 -1431.597622] SLOW spr round 15 (radius: 15)
[00:03:38 -1431.227683] SLOW spr round 16 (radius: 5)
[00:03:43 -1431.227683] SLOW spr round 17 (radius: 10)
[00:03:47 -1431.101585] SLOW spr round 18 (radius: 5)
[00:03:51 -1431.100165] SLOW spr round 19 (radius: 10)
[00:03:54 -1431.100165] SLOW spr round 20 (radius: 15)
[00:03:59 -1431.100165] SLOW spr round 21 (radius: 20)
[00:04:05 -1423.561675] SLOW spr round 22 (radius: 5)
[00:04:09 -1423.561672] SLOW spr round 23 (radius: 10)
[00:04:13 -1423.561672] SLOW spr round 24 (radius: 15)
[00:04:18 -1423.561672] SLOW spr round 25 (radius: 20)
[00:04:23 -1422.418689] SLOW spr round 26 (radius: 5)
[00:04:28 -1410.269024] SLOW spr round 27 (radius: 5)
[00:04:32 -1410.268409] SLOW spr round 28 (radius: 10)
[00:04:35 -1410.268407] SLOW spr round 29 (radius: 15)
[00:04:40 -1410.268407] SLOW spr round 30 (radius: 20)
[00:04:46 -1410.268407] SLOW spr round 31 (radius: 25)
[00:04:52 -1408.505061] SLOW spr round 32 (radius: 5)
[00:04:56 -1408.505058] SLOW spr round 33 (radius: 10)
[00:05:00 -1408.505058] SLOW spr round 34 (radius: 15)
[00:05:05 -1408.505058] SLOW spr round 35 (radius: 20)
[00:05:10 -1399.620166] SLOW spr round 36 (radius: 5)
[00:05:15 -1392.419238] SLOW spr round 37 (radius: 5)
[00:05:19 -1387.522783] SLOW spr round 38 (radius: 5)
[00:05:22 -1387.522783] SLOW spr round 39 (radius: 10)
[00:05:26 -1387.522783] SLOW spr round 40 (radius: 15)
[00:05:31 -1387.522783] SLOW spr round 41 (radius: 20)
[00:05:36 -1386.869470] SLOW spr round 42 (radius: 5)
[00:05:41 -1386.869470] SLOW spr round 43 (radius: 10)
[00:05:45 -1386.869470] SLOW spr round 44 (radius: 15)
[00:05:49 -1386.869470] SLOW spr round 45 (radius: 20)
[00:05:55 -1385.224611] SLOW spr round 46 (radius: 5)
[00:05:59 -1385.224563] SLOW spr round 47 (radius: 10)
[00:06:03 -1385.224563] SLOW spr round 48 (radius: 15)
[00:06:08 -1385.224563] SLOW spr round 49 (radius: 20)
[00:06:13 -1385.224563] SLOW spr round 50 (radius: 25)
[00:06:19 -1384.902125] SLOW spr round 51 (radius: 5)
[00:06:23 -1384.901631] SLOW spr round 52 (radius: 10)
[00:06:27 -1384.901614] SLOW spr round 53 (radius: 15)
[00:06:32 -1384.901613] SLOW spr round 54 (radius: 20)
[00:06:37 -1384.901613] SLOW spr round 55 (radius: 25)
[00:06:43 -1384.077128] SLOW spr round 56 (radius: 5)
[00:06:47 -1384.077087] SLOW spr round 57 (radius: 10)
[00:06:51 -1384.077087] SLOW spr round 58 (radius: 15)
[00:06:56 -1384.077087] SLOW spr round 59 (radius: 20)
[00:07:01 -1384.077087] SLOW spr round 60 (radius: 25)
[00:07:07 -1383.512600] SLOW spr round 61 (radius: 5)
[00:07:12 -1383.512600] SLOW spr round 62 (radius: 10)
[00:07:16 -1383.512600] SLOW spr round 63 (radius: 15)
[00:07:21 -1383.512600] SLOW spr round 64 (radius: 20)
[00:07:26 -1383.512600] SLOW spr round 65 (radius: 25)
[00:07:32 -1383.512600] Model parameter optimization (eps = 0.100000)

[00:07:32] ML tree search #2, logLikelihood: -1383.468830

[00:07:32 -3649.604035] Initial branch length optimization
[00:07:32 -2852.178903] Model parameter optimization (eps = 10.000000)
[00:07:34 -2797.486173] AUTODETECT spr round 1 (radius: 5)
[00:07:36 -2315.344972] AUTODETECT spr round 2 (radius: 10)
[00:07:39 -1872.756277] AUTODETECT spr round 3 (radius: 15)
[00:07:43 -1657.783913] AUTODETECT spr round 4 (radius: 20)
[00:07:47 -1605.513621] AUTODETECT spr round 5 (radius: 25)
[00:07:51 -1559.111134] SPR radius for FAST iterations: 25 (autodetect)
[00:07:51 -1559.111134] Model parameter optimization (eps = 3.000000)
[00:07:52 -1553.824127] FAST spr round 1 (radius: 25)
[00:07:55 -1435.836187] FAST spr round 2 (radius: 25)
[00:07:58 -1430.946455] FAST spr round 3 (radius: 25)
[00:08:01 -1430.868955] Model parameter optimization (eps = 1.000000)
[00:08:01 -1430.868722] SLOW spr round 1 (radius: 5)
[00:08:05 -1430.340022] SLOW spr round 2 (radius: 5)
[00:08:08 -1430.065215] SLOW spr round 3 (radius: 5)
[00:08:12 -1430.063821] SLOW spr round 4 (radius: 10)
[00:08:15 -1426.205106] SLOW spr round 5 (radius: 5)
[00:08:19 -1424.017076] SLOW spr round 6 (radius: 5)
[00:08:23 -1423.973128] SLOW spr round 7 (radius: 10)
[00:08:26 -1423.971388] SLOW spr round 8 (radius: 15)
[00:08:31 -1418.484322] SLOW spr round 9 (radius: 5)
[00:08:36 -1417.466617] SLOW spr round 10 (radius: 5)
[00:08:39 -1417.462869] SLOW spr round 11 (radius: 10)
[00:08:43 -1417.462545] SLOW spr round 12 (radius: 15)
[00:08:48 -1417.462528] SLOW spr round 13 (radius: 20)
[00:08:54 -1416.471771] SLOW spr round 14 (radius: 5)
[00:08:59 -1416.471771] SLOW spr round 15 (radius: 10)
[00:09:03 -1415.575683] SLOW spr round 16 (radius: 5)
[00:09:07 -1415.575680] SLOW spr round 17 (radius: 10)
[00:09:10 -1415.575680] SLOW spr round 18 (radius: 15)
[00:09:15 -1415.575680] SLOW spr round 19 (radius: 20)
[00:09:22 -1415.575680] SLOW spr round 20 (radius: 25)
[00:09:28 -1411.765324] SLOW spr round 21 (radius: 5)
[00:09:33 -1408.199459] SLOW spr round 22 (radius: 5)
[00:09:37 -1408.199379] SLOW spr round 23 (radius: 10)
[00:09:41 -1408.199377] SLOW spr round 24 (radius: 15)
[00:09:46 -1407.833550] SLOW spr round 25 (radius: 5)
[00:09:51 -1407.827132] SLOW spr round 26 (radius: 10)
[00:09:54 -1407.823657] SLOW spr round 27 (radius: 15)
[00:09:59 -1407.823457] SLOW spr round 28 (radius: 20)
[00:10:05 -1407.823457] SLOW spr round 29 (radius: 25)
[00:10:12 -1406.756901] SLOW spr round 30 (radius: 5)
[00:10:17 -1406.756901] SLOW spr round 31 (radius: 10)
[00:10:21 -1406.756901] SLOW spr round 32 (radius: 15)
[00:10:25 -1406.756901] SLOW spr round 33 (radius: 20)
[00:10:31 -1406.756901] SLOW spr round 34 (radius: 25)
[00:10:38 -1406.338591] SLOW spr round 35 (radius: 5)
[00:10:43 -1406.249361] SLOW spr round 36 (radius: 10)
[00:10:47 -1405.958768] SLOW spr round 37 (radius: 5)
[00:10:51 -1405.958596] SLOW spr round 38 (radius: 10)
[00:10:54 -1405.958582] SLOW spr round 39 (radius: 15)
[00:10:59 -1405.958580] SLOW spr round 40 (radius: 20)
[00:11:05 -1405.958580] SLOW spr round 41 (radius: 25)
[00:11:12 -1405.958580] Model parameter optimization (eps = 0.100000)

[00:11:13] ML tree search #3, logLikelihood: -1405.958580

[00:11:13 -3678.911918] Initial branch length optimization
[00:11:13 -2788.355447] Model parameter optimization (eps = 10.000000)
[00:11:13 -2780.554394] AUTODETECT spr round 1 (radius: 5)
[00:11:16 -2291.787252] AUTODETECT spr round 2 (radius: 10)
[00:11:19 -1965.744315] AUTODETECT spr round 3 (radius: 15)
[00:11:23 -1791.000184] AUTODETECT spr round 4 (radius: 20)
[00:11:27 -1683.805735] AUTODETECT spr round 5 (radius: 25)
[00:11:31 -1634.891527] SPR radius for FAST iterations: 25 (autodetect)
[00:11:31 -1634.891527] Model parameter optimization (eps = 3.000000)
[00:11:31 -1632.240132] FAST spr round 1 (radius: 25)
[00:11:34 -1529.303876] FAST spr round 2 (radius: 25)
[00:11:38 -1511.111235] FAST spr round 3 (radius: 25)
[00:11:41 -1510.145755] FAST spr round 4 (radius: 25)
[00:11:44 -1509.829416] FAST spr round 5 (radius: 25)
[00:11:47 -1509.801862] Model parameter optimization (eps = 1.000000)
[00:11:47 -1509.794944] SLOW spr round 1 (radius: 5)
[00:11:51 -1504.231899] SLOW spr round 2 (radius: 5)
[00:11:55 -1494.947650] SLOW spr round 3 (radius: 5)
[00:11:58 -1494.947643] SLOW spr round 4 (radius: 10)
[00:12:02 -1493.284515] SLOW spr round 5 (radius: 5)
[00:12:06 -1493.284224] SLOW spr round 6 (radius: 10)
[00:12:10 -1491.113429] SLOW spr round 7 (radius: 5)
[00:12:14 -1491.113427] SLOW spr round 8 (radius: 10)
[00:12:18 -1491.113426] SLOW spr round 9 (radius: 15)
[00:12:23 -1441.726530] SLOW spr round 10 (radius: 5)
[00:12:28 -1437.107290] SLOW spr round 11 (radius: 5)
[00:12:32 -1436.714919] SLOW spr round 12 (radius: 5)
[00:12:35 -1436.712329] SLOW spr round 13 (radius: 10)
[00:12:39 -1436.712316] SLOW spr round 14 (radius: 15)
[00:12:44 -1436.712316] SLOW spr round 15 (radius: 20)
[00:12:50 -1427.986312] SLOW spr round 16 (radius: 5)
[00:12:55 -1427.985866] SLOW spr round 17 (radius: 10)
[00:12:59 -1427.939737] SLOW spr round 18 (radius: 15)
[00:13:04 -1426.951394] SLOW spr round 19 (radius: 5)
[00:13:09 -1426.603277] SLOW spr round 20 (radius: 5)
[00:13:12 -1426.603217] SLOW spr round 21 (radius: 10)
[00:13:16 -1426.603216] SLOW spr round 22 (radius: 15)
[00:13:21 -1426.603216] SLOW spr round 23 (radius: 20)
[00:13:28 -1424.175672] SLOW spr round 24 (radius: 5)
[00:13:32 -1422.475214] SLOW spr round 25 (radius: 5)
[00:13:36 -1422.474971] SLOW spr round 26 (radius: 10)
[00:13:40 -1422.474907] SLOW spr round 27 (radius: 15)
[00:13:45 -1422.474890] SLOW spr round 28 (radius: 20)
[00:13:51 -1422.474885] SLOW spr round 29 (radius: 25)
[00:13:58 -1408.584389] SLOW spr round 30 (radius: 5)
[00:14:03 -1394.717036] SLOW spr round 31 (radius: 5)
[00:14:07 -1394.716209] SLOW spr round 32 (radius: 10)
[00:14:11 -1394.556565] SLOW spr round 33 (radius: 5)
[00:14:15 -1394.556556] SLOW spr round 34 (radius: 10)
[00:14:18 -1394.556554] SLOW spr round 35 (radius: 15)
[00:14:23 -1394.169940] SLOW spr round 36 (radius: 5)
[00:14:28 -1394.169940] SLOW spr round 37 (radius: 10)
[00:14:32 -1392.981810] SLOW spr round 38 (radius: 5)
[00:14:36 -1392.981662] SLOW spr round 39 (radius: 10)
[00:14:39 -1392.610401] SLOW spr round 40 (radius: 5)
[00:14:43 -1392.610400] SLOW spr round 41 (radius: 10)
[00:14:47 -1392.610400] SLOW spr round 42 (radius: 15)
[00:14:52 -1392.610400] SLOW spr round 43 (radius: 20)
[00:14:58 -1388.211485] SLOW spr round 44 (radius: 5)
[00:15:03 -1384.399062] SLOW spr round 45 (radius: 5)
[00:15:06 -1384.399062] SLOW spr round 46 (radius: 10)
[00:15:10 -1384.399062] SLOW spr round 47 (radius: 15)
[00:15:15 -1384.142385] SLOW spr round 48 (radius: 5)
[00:15:20 -1384.142382] SLOW spr round 49 (radius: 10)
[00:15:23 -1384.142382] SLOW spr round 50 (radius: 15)
[00:15:28 -1384.142382] SLOW spr round 51 (radius: 20)
[00:15:35 -1384.142382] SLOW spr round 52 (radius: 25)
[00:15:41 -1384.096612] Model parameter optimization (eps = 0.100000)

[00:15:42] ML tree search #4, logLikelihood: -1383.981857

[00:15:42 -3653.757560] Initial branch length optimization
[00:15:42 -2778.895424] Model parameter optimization (eps = 10.000000)
[00:15:43 -2769.702380] AUTODETECT spr round 1 (radius: 5)
[00:15:45 -2341.232388] AUTODETECT spr round 2 (radius: 10)
[00:15:49 -2037.412300] AUTODETECT spr round 3 (radius: 15)
[00:15:52 -1838.524118] AUTODETECT spr round 4 (radius: 20)
[00:15:56 -1763.301475] AUTODETECT spr round 5 (radius: 25)
[00:16:00 -1690.399074] SPR radius for FAST iterations: 25 (autodetect)
[00:16:00 -1690.399074] Model parameter optimization (eps = 3.000000)
[00:16:00 -1690.271386] FAST spr round 1 (radius: 25)
[00:16:03 -1594.438175] FAST spr round 2 (radius: 25)
[00:16:06 -1566.183641] FAST spr round 3 (radius: 25)
[00:16:09 -1557.843756] FAST spr round 4 (radius: 25)
[00:16:12 -1557.390814] FAST spr round 5 (radius: 25)
[00:16:15 -1557.390628] Model parameter optimization (eps = 1.000000)
[00:16:16 -1557.108184] SLOW spr round 1 (radius: 5)
[00:16:19 -1554.811898] SLOW spr round 2 (radius: 5)
[00:16:23 -1554.740745] SLOW spr round 3 (radius: 10)
[00:16:26 -1547.899637] SLOW spr round 4 (radius: 5)
[00:16:31 -1547.860586] SLOW spr round 5 (radius: 10)
[00:16:34 -1544.942145] SLOW spr round 6 (radius: 5)
[00:16:38 -1544.941920] SLOW spr round 7 (radius: 10)
[00:16:42 -1543.675808] SLOW spr round 8 (radius: 5)
[00:16:46 -1543.673248] SLOW spr round 9 (radius: 10)
[00:16:50 -1543.672951] SLOW spr round 10 (radius: 15)
[00:16:55 -1537.142649] SLOW spr round 11 (radius: 5)
[00:16:59 -1537.142646] SLOW spr round 12 (radius: 10)
[00:17:03 -1537.142646] SLOW spr round 13 (radius: 15)
[00:17:08 -1535.254699] SLOW spr round 14 (radius: 5)
[00:17:12 -1535.254699] SLOW spr round 15 (radius: 10)
[00:17:16 -1535.254699] SLOW spr round 16 (radius: 15)
[00:17:21 -1535.254699] SLOW spr round 17 (radius: 20)
[00:17:26 -1530.000167] SLOW spr round 18 (radius: 5)
[00:17:31 -1517.076320] SLOW spr round 19 (radius: 5)
[00:17:35 -1516.703292] SLOW spr round 20 (radius: 5)
[00:17:39 -1516.700644] SLOW spr round 21 (radius: 10)
[00:17:43 -1515.873637] SLOW spr round 22 (radius: 5)
[00:17:47 -1515.794213] SLOW spr round 23 (radius: 10)
[00:17:51 -1515.792397] SLOW spr round 24 (radius: 15)
[00:17:55 -1513.410817] SLOW spr round 25 (radius: 5)
[00:18:00 -1513.410815] SLOW spr round 26 (radius: 10)
[00:18:04 -1513.410815] SLOW spr round 27 (radius: 15)
[00:18:09 -1513.410815] SLOW spr round 28 (radius: 20)
[00:18:14 -1511.573065] SLOW spr round 29 (radius: 5)
[00:18:19 -1511.573065] SLOW spr round 30 (radius: 10)
[00:18:23 -1511.573065] SLOW spr round 31 (radius: 15)
[00:18:28 -1511.573065] SLOW spr round 32 (radius: 20)
[00:18:33 -1511.573065] SLOW spr round 33 (radius: 25)
[00:18:38 -1511.002170] SLOW spr round 34 (radius: 5)
[00:18:43 -1510.189125] SLOW spr round 35 (radius: 5)
[00:18:47 -1510.189080] SLOW spr round 36 (radius: 10)
[00:18:50 -1510.189080] SLOW spr round 37 (radius: 15)
[00:18:55 -1501.461009] SLOW spr round 38 (radius: 5)
[00:18:59 -1495.276399] SLOW spr round 39 (radius: 5)
[00:19:03 -1495.276388] SLOW spr round 40 (radius: 10)
[00:19:07 -1495.276388] SLOW spr round 41 (radius: 15)
[00:19:11 -1495.276388] SLOW spr round 42 (radius: 20)
[00:19:16 -1495.276388] SLOW spr round 43 (radius: 25)
[00:19:22 -1495.276388] Model parameter optimization (eps = 0.100000)

[00:19:22] ML tree search #5, logLikelihood: -1495.228346

[00:19:22 -3628.089726] Initial branch length optimization
[00:19:22 -2817.817690] Model parameter optimization (eps = 10.000000)
[00:19:24 -2801.780728] AUTODETECT spr round 1 (radius: 5)
[00:19:26 -2272.467516] AUTODETECT spr round 2 (radius: 10)
[00:19:30 -1873.350565] AUTODETECT spr round 3 (radius: 15)
[00:19:33 -1700.346130] AUTODETECT spr round 4 (radius: 20)
[00:19:37 -1619.345646] AUTODETECT spr round 5 (radius: 25)
[00:19:41 -1552.093289] SPR radius for FAST iterations: 25 (autodetect)
[00:19:41 -1552.093289] Model parameter optimization (eps = 3.000000)
[00:19:42 -1545.740743] FAST spr round 1 (radius: 25)
[00:19:45 -1437.503869] FAST spr round 2 (radius: 25)
[00:19:48 -1427.383438] FAST spr round 3 (radius: 25)
[00:19:51 -1427.383425] Model parameter optimization (eps = 1.000000)
[00:19:51 -1427.236588] SLOW spr round 1 (radius: 5)
[00:19:55 -1426.952580] SLOW spr round 2 (radius: 5)
[00:19:58 -1426.952495] SLOW spr round 3 (radius: 10)
[00:20:02 -1422.763890] SLOW spr round 4 (radius: 5)
[00:20:06 -1422.512879] SLOW spr round 5 (radius: 5)
[00:20:09 -1422.512739] SLOW spr round 6 (radius: 10)
[00:20:13 -1421.237705] SLOW spr round 7 (radius: 5)
[00:20:17 -1417.095124] SLOW spr round 8 (radius: 5)
[00:20:21 -1417.094261] SLOW spr round 9 (radius: 10)
[00:20:24 -1417.094149] SLOW spr round 10 (radius: 15)
[00:20:29 -1414.340272] SLOW spr round 11 (radius: 5)
[00:20:34 -1413.294631] SLOW spr round 12 (radius: 5)
[00:20:37 -1413.294469] SLOW spr round 13 (radius: 10)
[00:20:41 -1413.102872] SLOW spr round 14 (radius: 5)
[00:20:45 -1413.102869] SLOW spr round 15 (radius: 10)
[00:20:48 -1412.906497] SLOW spr round 16 (radius: 5)
[00:20:52 -1412.775201] SLOW spr round 17 (radius: 5)
[00:20:56 -1412.774684] SLOW spr round 18 (radius: 10)
[00:20:59 -1412.774673] SLOW spr round 19 (radius: 15)
[00:21:04 -1412.689868] SLOW spr round 20 (radius: 20)
[00:21:09 -1411.052095] SLOW spr round 21 (radius: 5)
[00:21:14 -1409.476650] SLOW spr round 22 (radius: 5)
[00:21:17 -1409.476647] SLOW spr round 23 (radius: 10)
[00:21:21 -1409.476647] SLOW spr round 24 (radius: 15)
[00:21:26 -1408.330167] SLOW spr round 25 (radius: 5)
[00:21:30 -1408.330167] SLOW spr round 26 (radius: 10)
[00:21:34 -1408.330167] SLOW spr round 27 (radius: 15)
[00:21:38 -1408.330167] SLOW spr round 28 (radius: 20)
[00:21:43 -1407.351890] SLOW spr round 29 (radius: 5)
[00:21:48 -1407.351890] SLOW spr round 30 (radius: 10)
[00:21:51 -1407.351890] SLOW spr round 31 (radius: 15)
[00:21:56 -1407.351890] SLOW spr round 32 (radius: 20)
[00:22:01 -1407.351890] SLOW spr round 33 (radius: 25)
[00:22:07 -1393.036730] SLOW spr round 34 (radius: 5)
[00:22:11 -1388.455942] SLOW spr round 35 (radius: 5)
[00:22:15 -1388.369855] SLOW spr round 36 (radius: 10)
[00:22:19 -1387.801138] SLOW spr round 37 (radius: 5)
[00:22:23 -1387.800991] SLOW spr round 38 (radius: 10)
[00:22:26 -1387.800988] SLOW spr round 39 (radius: 15)
[00:22:31 -1387.524382] SLOW spr round 40 (radius: 5)
[00:22:35 -1386.385020] SLOW spr round 41 (radius: 5)
[00:22:39 -1386.385020] SLOW spr round 42 (radius: 10)
[00:22:42 -1386.385020] SLOW spr round 43 (radius: 15)
[00:22:47 -1385.794052] SLOW spr round 44 (radius: 5)
[00:22:51 -1385.793961] SLOW spr round 45 (radius: 10)
[00:22:54 -1385.793959] SLOW spr round 46 (radius: 15)
[00:22:59 -1385.793959] SLOW spr round 47 (radius: 20)
[00:23:04 -1384.457214] SLOW spr round 48 (radius: 5)
[00:23:08 -1384.457214] SLOW spr round 49 (radius: 10)
[00:23:12 -1384.457214] SLOW spr round 50 (radius: 15)
[00:23:17 -1384.457214] SLOW spr round 51 (radius: 20)
[00:23:22 -1384.457214] SLOW spr round 52 (radius: 25)
[00:23:27 -1384.457214] Model parameter optimization (eps = 0.100000)

[00:23:28] ML tree search #6, logLikelihood: -1384.448928

[00:23:28 -3596.280431] Initial branch length optimization
[00:23:28 -2782.417833] Model parameter optimization (eps = 10.000000)
[00:23:28 -2772.695098] AUTODETECT spr round 1 (radius: 5)
[00:23:31 -2230.898531] AUTODETECT spr round 2 (radius: 10)
[00:23:34 -1869.845366] AUTODETECT spr round 3 (radius: 15)
[00:23:38 -1653.775809] AUTODETECT spr round 4 (radius: 20)
[00:23:42 -1598.537656] AUTODETECT spr round 5 (radius: 25)
[00:23:46 -1588.267162] SPR radius for FAST iterations: 25 (autodetect)
[00:23:46 -1588.267162] Model parameter optimization (eps = 3.000000)
[00:23:46 -1588.110335] FAST spr round 1 (radius: 25)
[00:23:49 -1483.441770] FAST spr round 2 (radius: 25)
[00:23:52 -1480.785138] FAST spr round 3 (radius: 25)
[00:23:55 -1480.783532] Model parameter optimization (eps = 1.000000)
[00:23:56 -1480.736654] SLOW spr round 1 (radius: 5)
[00:24:00 -1479.989005] SLOW spr round 2 (radius: 5)
[00:24:03 -1479.988839] SLOW spr round 3 (radius: 10)
[00:24:07 -1475.258861] SLOW spr round 4 (radius: 5)
[00:24:11 -1475.145834] SLOW spr round 5 (radius: 5)
[00:24:15 -1475.145337] SLOW spr round 6 (radius: 10)
[00:24:19 -1474.370794] SLOW spr round 7 (radius: 5)
[00:24:23 -1474.370782] SLOW spr round 8 (radius: 10)
[00:24:27 -1468.312537] SLOW spr round 9 (radius: 5)
[00:24:31 -1466.152773] SLOW spr round 10 (radius: 5)
[00:24:34 -1466.152769] SLOW spr round 11 (radius: 10)
[00:24:38 -1466.152768] SLOW spr round 12 (radius: 15)
[00:24:43 -1453.438678] SLOW spr round 13 (radius: 5)
[00:24:47 -1453.215196] SLOW spr round 14 (radius: 5)
[00:24:51 -1453.214911] SLOW spr round 15 (radius: 10)
[00:24:54 -1451.463680] SLOW spr round 16 (radius: 5)
[00:24:58 -1448.829364] SLOW spr round 17 (radius: 5)
[00:25:02 -1448.829053] SLOW spr round 18 (radius: 10)
[00:25:05 -1448.828947] SLOW spr round 19 (radius: 15)
[00:25:10 -1447.814039] SLOW spr round 20 (radius: 5)
[00:25:14 -1447.030993] SLOW spr round 21 (radius: 5)
[00:25:18 -1447.030923] SLOW spr round 22 (radius: 10)
[00:25:22 -1447.030921] SLOW spr round 23 (radius: 15)
[00:25:26 -1446.756479] SLOW spr round 24 (radius: 5)
[00:25:31 -1446.756478] SLOW spr round 25 (radius: 10)
[00:25:35 -1445.633652] SLOW spr round 26 (radius: 5)
[00:25:39 -1445.631338] SLOW spr round 27 (radius: 10)
[00:25:42 -1445.631084] SLOW spr round 28 (radius: 15)
[00:25:47 -1445.631007] SLOW spr round 29 (radius: 20)
[00:25:53 -1442.374573] SLOW spr round 30 (radius: 5)
[00:25:57 -1441.557258] SLOW spr round 31 (radius: 5)
[00:26:01 -1441.137180] SLOW spr round 32 (radius: 5)
[00:26:05 -1441.137095] SLOW spr round 33 (radius: 10)
[00:26:08 -1441.137090] SLOW spr round 34 (radius: 15)
[00:26:13 -1441.133556] SLOW spr round 35 (radius: 20)
[00:26:19 -1438.126678] SLOW spr round 36 (radius: 5)
[00:26:24 -1436.835386] SLOW spr round 37 (radius: 5)
[00:26:27 -1436.826716] SLOW spr round 38 (radius: 10)
[00:26:31 -1436.672801] SLOW spr round 39 (radius: 5)
[00:26:35 -1436.672115] SLOW spr round 40 (radius: 10)
[00:26:39 -1436.671470] SLOW spr round 41 (radius: 15)
[00:26:43 -1431.041035] SLOW spr round 42 (radius: 5)
[00:26:48 -1417.956711] SLOW spr round 43 (radius: 5)
[00:26:51 -1414.216758] SLOW spr round 44 (radius: 5)
[00:26:54 -1414.216336] SLOW spr round 45 (radius: 10)
[00:26:58 -1414.216331] SLOW spr round 46 (radius: 15)
[00:27:03 -1414.216330] SLOW spr round 47 (radius: 20)
[00:27:09 -1414.096140] SLOW spr round 48 (radius: 5)
[00:27:13 -1414.096140] SLOW spr round 49 (radius: 10)
[00:27:17 -1411.786325] SLOW spr round 50 (radius: 5)
[00:27:21 -1411.771661] SLOW spr round 51 (radius: 10)
[00:27:25 -1411.770514] SLOW spr round 52 (radius: 15)
[00:27:29 -1411.769768] SLOW spr round 53 (radius: 20)
[00:27:36 -1398.547923] SLOW spr round 54 (radius: 5)
[00:27:40 -1398.547884] SLOW spr round 55 (radius: 10)
[00:27:44 -1398.547873] SLOW spr round 56 (radius: 15)
[00:27:48 -1398.419555] SLOW spr round 57 (radius: 5)
[00:27:53 -1398.419554] SLOW spr round 58 (radius: 10)
[00:27:57 -1398.419553] SLOW spr round 59 (radius: 15)
[00:28:01 -1398.419553] SLOW spr round 60 (radius: 20)
[00:28:07 -1398.419553] SLOW spr round 61 (radius: 25)
[00:28:14 -1397.269290] SLOW spr round 62 (radius: 5)
[00:28:18 -1397.269290] SLOW spr round 63 (radius: 10)
[00:28:22 -1395.941700] SLOW spr round 64 (radius: 5)
[00:28:26 -1395.941699] SLOW spr round 65 (radius: 10)
[00:28:30 -1395.941699] SLOW spr round 66 (radius: 15)
[00:28:34 -1395.941699] SLOW spr round 67 (radius: 20)
[00:28:40 -1395.941699] SLOW spr round 68 (radius: 25)
[00:28:46 -1395.170199] SLOW spr round 69 (radius: 5)
[00:28:51 -1395.170199] SLOW spr round 70 (radius: 10)
[00:28:54 -1395.170199] SLOW spr round 71 (radius: 15)
[00:28:58 -1395.170199] SLOW spr round 72 (radius: 20)
[00:29:04 -1395.170199] SLOW spr round 73 (radius: 25)
[00:29:11 -1395.170199] Model parameter optimization (eps = 0.100000)

[00:29:11] ML tree search #7, logLikelihood: -1394.697556

[00:29:11 -3618.854037] Initial branch length optimization
[00:29:11 -2800.612692] Model parameter optimization (eps = 10.000000)
[00:29:13 -2754.717788] AUTODETECT spr round 1 (radius: 5)
[00:29:15 -2286.013401] AUTODETECT spr round 2 (radius: 10)
[00:29:19 -1970.413877] AUTODETECT spr round 3 (radius: 15)
[00:29:22 -1776.536269] AUTODETECT spr round 4 (radius: 20)
[00:29:26 -1671.399956] AUTODETECT spr round 5 (radius: 25)
[00:29:30 -1654.044709] SPR radius for FAST iterations: 25 (autodetect)
[00:29:30 -1654.044709] Model parameter optimization (eps = 3.000000)
[00:29:30 -1654.026355] FAST spr round 1 (radius: 25)
[00:29:33 -1492.052494] FAST spr round 2 (radius: 25)
[00:29:36 -1473.580821] FAST spr round 3 (radius: 25)
[00:29:39 -1467.928379] FAST spr round 4 (radius: 25)
[00:29:42 -1467.928359] Model parameter optimization (eps = 1.000000)
[00:29:43 -1467.765104] SLOW spr round 1 (radius: 5)
[00:29:47 -1466.919445] SLOW spr round 2 (radius: 5)
[00:29:50 -1466.917563] SLOW spr round 3 (radius: 10)
[00:29:54 -1457.263891] SLOW spr round 4 (radius: 5)
[00:29:58 -1456.911777] SLOW spr round 5 (radius: 5)
[00:30:02 -1456.911676] SLOW spr round 6 (radius: 10)
[00:30:05 -1456.602489] SLOW spr round 7 (radius: 5)
[00:30:10 -1456.602488] SLOW spr round 8 (radius: 10)
[00:30:13 -1453.636591] SLOW spr round 9 (radius: 5)
[00:30:17 -1452.491459] SLOW spr round 10 (radius: 5)
[00:30:21 -1452.491457] SLOW spr round 11 (radius: 10)
[00:30:25 -1451.062571] SLOW spr round 12 (radius: 5)
[00:30:29 -1450.767361] SLOW spr round 13 (radius: 5)
[00:30:32 -1450.767358] SLOW spr round 14 (radius: 10)
[00:30:36 -1450.767182] SLOW spr round 15 (radius: 15)
[00:30:41 -1445.790889] SLOW spr round 16 (radius: 5)
[00:30:45 -1445.754811] SLOW spr round 17 (radius: 10)
[00:30:49 -1445.659436] SLOW spr round 18 (radius: 15)
[00:30:54 -1441.934784] SLOW spr round 19 (radius: 5)
[00:30:58 -1439.992036] SLOW spr round 20 (radius: 5)
[00:31:02 -1439.826459] SLOW spr round 21 (radius: 5)
[00:31:05 -1439.826454] SLOW spr round 22 (radius: 10)
[00:31:09 -1439.826454] SLOW spr round 23 (radius: 15)
[00:31:14 -1439.826454] SLOW spr round 24 (radius: 20)
[00:31:20 -1436.744626] SLOW spr round 25 (radius: 5)
[00:31:24 -1436.744599] SLOW spr round 26 (radius: 10)
[00:31:28 -1436.744599] SLOW spr round 27 (radius: 15)
[00:31:33 -1436.744536] SLOW spr round 28 (radius: 20)
[00:31:39 -1435.943127] SLOW spr round 29 (radius: 5)
[00:31:44 -1435.943127] SLOW spr round 30 (radius: 10)
[00:31:47 -1435.942929] SLOW spr round 31 (radius: 15)
[00:31:52 -1435.942929] SLOW spr round 32 (radius: 20)
[00:31:58 -1435.942929] SLOW spr round 33 (radius: 25)
[00:32:04 -1435.942929] Model parameter optimization (eps = 0.100000)

[00:32:04] ML tree search #8, logLikelihood: -1435.931666

[00:32:04 -3660.047480] Initial branch length optimization
[00:32:04 -2778.080600] Model parameter optimization (eps = 10.000000)
[00:32:05 -2769.407689] AUTODETECT spr round 1 (radius: 5)
[00:32:07 -2312.430747] AUTODETECT spr round 2 (radius: 10)
[00:32:11 -1960.772709] AUTODETECT spr round 3 (radius: 15)
[00:32:14 -1747.568801] AUTODETECT spr round 4 (radius: 20)
[00:32:18 -1651.891616] AUTODETECT spr round 5 (radius: 25)
[00:32:21 -1631.453531] SPR radius for FAST iterations: 25 (autodetect)
[00:32:21 -1631.453531] Model parameter optimization (eps = 3.000000)
[00:32:22 -1631.431950] FAST spr round 1 (radius: 25)
[00:32:25 -1520.754317] FAST spr round 2 (radius: 25)
[00:32:28 -1506.817656] FAST spr round 3 (radius: 25)
[00:32:30 -1506.153158] FAST spr round 4 (radius: 25)
[00:32:33 -1506.146815] Model parameter optimization (eps = 1.000000)
[00:32:34 -1506.139242] SLOW spr round 1 (radius: 5)
[00:32:37 -1505.953466] SLOW spr round 2 (radius: 5)
[00:32:41 -1505.952337] SLOW spr round 3 (radius: 10)
[00:32:44 -1502.583142] SLOW spr round 4 (radius: 5)
[00:32:49 -1502.565502] SLOW spr round 5 (radius: 10)
[00:32:52 -1484.065496] SLOW spr round 6 (radius: 5)
[00:32:56 -1483.361843] SLOW spr round 7 (radius: 5)
[00:33:00 -1483.361596] SLOW spr round 8 (radius: 10)
[00:33:03 -1481.370444] SLOW spr round 9 (radius: 5)
[00:33:08 -1480.858540] SLOW spr round 10 (radius: 5)
[00:33:11 -1480.858470] SLOW spr round 11 (radius: 10)
[00:33:15 -1480.858465] SLOW spr round 12 (radius: 15)
[00:33:20 -1470.574666] SLOW spr round 13 (radius: 5)
[00:33:24 -1470.435783] SLOW spr round 14 (radius: 5)
[00:33:28 -1470.432780] SLOW spr round 15 (radius: 10)
[00:33:32 -1470.431034] SLOW spr round 16 (radius: 15)
[00:33:37 -1459.924900] SLOW spr round 17 (radius: 5)
[00:33:42 -1452.091575] SLOW spr round 18 (radius: 5)
[00:33:46 -1451.309325] SLOW spr round 19 (radius: 5)
[00:33:49 -1451.309304] SLOW spr round 20 (radius: 10)
[00:33:52 -1451.309301] SLOW spr round 21 (radius: 15)
[00:33:58 -1451.309301] SLOW spr round 22 (radius: 20)
[00:34:05 -1421.810727] SLOW spr round 23 (radius: 5)
[00:34:09 -1405.751110] SLOW spr round 24 (radius: 5)
[00:34:13 -1405.350409] SLOW spr round 25 (radius: 5)
[00:34:17 -1405.350394] SLOW spr round 26 (radius: 10)
[00:34:20 -1401.879956] SLOW spr round 27 (radius: 5)
[00:34:25 -1400.120636] SLOW spr round 28 (radius: 5)
[00:34:28 -1400.061106] SLOW spr round 29 (radius: 10)
[00:34:32 -1400.056144] SLOW spr round 30 (radius: 15)
[00:34:37 -1397.297692] SLOW spr round 31 (radius: 5)
[00:34:42 -1397.051477] SLOW spr round 32 (radius: 5)
[00:34:45 -1397.051477] SLOW spr round 33 (radius: 10)
[00:34:49 -1396.629729] SLOW spr round 34 (radius: 5)
[00:34:53 -1396.629729] SLOW spr round 35 (radius: 10)
[00:34:57 -1396.620023] SLOW spr round 36 (radius: 15)
[00:35:01 -1396.620023] SLOW spr round 37 (radius: 20)
[00:35:07 -1396.620023] SLOW spr round 38 (radius: 25)
[00:35:13 -1389.410072] SLOW spr round 39 (radius: 5)
[00:35:18 -1385.115766] SLOW spr round 40 (radius: 5)
[00:35:22 -1382.837369] SLOW spr round 41 (radius: 5)
[00:35:25 -1382.736783] SLOW spr round 42 (radius: 5)
[00:35:28 -1382.736591] SLOW spr round 43 (radius: 10)
[00:35:32 -1382.736590] SLOW spr round 44 (radius: 15)
[00:35:37 -1382.688310] SLOW spr round 45 (radius: 20)
[00:35:43 -1382.688305] SLOW spr round 46 (radius: 25)
[00:35:48 -1382.625491] Model parameter optimization (eps = 0.100000)

[00:35:48] ML tree search #9, logLikelihood: -1382.596194

[00:35:48 -3681.344748] Initial branch length optimization
[00:35:48 -2848.409421] Model parameter optimization (eps = 10.000000)
[00:35:49 -2839.756633] AUTODETECT spr round 1 (radius: 5)
[00:35:52 -2286.857746] AUTODETECT spr round 2 (radius: 10)
[00:35:55 -1923.182539] AUTODETECT spr round 3 (radius: 15)
[00:35:58 -1762.638359] AUTODETECT spr round 4 (radius: 20)
[00:36:02 -1703.561222] AUTODETECT spr round 5 (radius: 25)
[00:36:06 -1615.332118] SPR radius for FAST iterations: 25 (autodetect)
[00:36:06 -1615.332118] Model parameter optimization (eps = 3.000000)
[00:36:06 -1613.092063] FAST spr round 1 (radius: 25)
[00:36:09 -1482.360489] FAST spr round 2 (radius: 25)
[00:36:12 -1475.573548] FAST spr round 3 (radius: 25)
[00:36:15 -1475.530982] Model parameter optimization (eps = 1.000000)
[00:36:16 -1475.423774] SLOW spr round 1 (radius: 5)
[00:36:20 -1471.509597] SLOW spr round 2 (radius: 5)
[00:36:23 -1461.653165] SLOW spr round 3 (radius: 5)
[00:36:27 -1460.987120] SLOW spr round 4 (radius: 5)
[00:36:30 -1460.987046] SLOW spr round 5 (radius: 10)
[00:36:34 -1438.419658] SLOW spr round 6 (radius: 5)
[00:36:38 -1433.707280] SLOW spr round 7 (radius: 5)
[00:36:42 -1432.582319] SLOW spr round 8 (radius: 5)
[00:36:45 -1432.580789] SLOW spr round 9 (radius: 10)
[00:36:49 -1432.580780] SLOW spr round 10 (radius: 15)
[00:36:54 -1426.481228] SLOW spr round 11 (radius: 5)
[00:36:59 -1417.724520] SLOW spr round 12 (radius: 5)
[00:37:02 -1416.314392] SLOW spr round 13 (radius: 5)
[00:37:06 -1416.313896] SLOW spr round 14 (radius: 10)
[00:37:09 -1415.581260] SLOW spr round 15 (radius: 5)
[00:37:13 -1415.581260] SLOW spr round 16 (radius: 10)
[00:37:17 -1413.058295] SLOW spr round 17 (radius: 5)
[00:37:21 -1411.323743] SLOW spr round 18 (radius: 5)
[00:37:25 -1411.323715] SLOW spr round 19 (radius: 10)
[00:37:28 -1411.323711] SLOW spr round 20 (radius: 15)
[00:37:33 -1411.323710] SLOW spr round 21 (radius: 20)
[00:37:39 -1392.239665] SLOW spr round 22 (radius: 5)
[00:37:44 -1392.239206] SLOW spr round 23 (radius: 10)
[00:37:47 -1392.125042] SLOW spr round 24 (radius: 5)
[00:37:51 -1392.124899] SLOW spr round 25 (radius: 10)
[00:37:55 -1392.124785] SLOW spr round 26 (radius: 15)
[00:38:00 -1391.042081] SLOW spr round 27 (radius: 5)
[00:38:04 -1391.041971] SLOW spr round 28 (radius: 10)
[00:38:08 -1391.041862] SLOW spr round 29 (radius: 15)
[00:38:13 -1391.041753] SLOW spr round 30 (radius: 20)
[00:38:18 -1389.541662] SLOW spr round 31 (radius: 5)
[00:38:23 -1389.078088] SLOW spr round 32 (radius: 5)
[00:38:27 -1389.077974] SLOW spr round 33 (radius: 10)
[00:38:30 -1389.077865] SLOW spr round 34 (radius: 15)
[00:38:35 -1388.136393] SLOW spr round 35 (radius: 5)
[00:38:39 -1388.136285] SLOW spr round 36 (radius: 10)
[00:38:43 -1388.136177] SLOW spr round 37 (radius: 15)
[00:38:47 -1388.136069] SLOW spr round 38 (radius: 20)
[00:38:53 -1387.951763] SLOW spr round 39 (radius: 5)
[00:38:57 -1387.951630] SLOW spr round 40 (radius: 10)
[00:39:01 -1387.951518] SLOW spr round 41 (radius: 15)
[00:39:05 -1387.880201] SLOW spr round 42 (radius: 20)
[00:39:11 -1387.880085] SLOW spr round 43 (radius: 25)
[00:39:16 -1387.879966] Model parameter optimization (eps = 0.100000)

[00:39:17] ML tree search #10, logLikelihood: -1387.764580

[00:39:17 -3626.511311] Initial branch length optimization
[00:39:17 -2766.049641] Model parameter optimization (eps = 10.000000)
[00:39:18 -2758.512242] AUTODETECT spr round 1 (radius: 5)
[00:39:21 -2219.685211] AUTODETECT spr round 2 (radius: 10)
[00:39:24 -1956.461018] AUTODETECT spr round 3 (radius: 15)
[00:39:27 -1788.900449] AUTODETECT spr round 4 (radius: 20)
[00:39:31 -1700.542739] AUTODETECT spr round 5 (radius: 25)
[00:39:35 -1648.068880] SPR radius for FAST iterations: 25 (autodetect)
[00:39:35 -1648.068880] Model parameter optimization (eps = 3.000000)
[00:39:35 -1647.299679] FAST spr round 1 (radius: 25)
[00:39:39 -1495.482055] FAST spr round 2 (radius: 25)
[00:39:42 -1460.762931] FAST spr round 3 (radius: 25)
[00:39:45 -1430.762179] FAST spr round 4 (radius: 25)
[00:39:48 -1429.227823] FAST spr round 5 (radius: 25)
[00:39:50 -1428.657669] FAST spr round 6 (radius: 25)
[00:39:53 -1428.654421] Model parameter optimization (eps = 1.000000)
[00:39:53 -1428.574136] SLOW spr round 1 (radius: 5)
[00:39:57 -1426.906070] SLOW spr round 2 (radius: 5)
[00:40:00 -1426.906041] SLOW spr round 3 (radius: 10)
[00:40:04 -1425.592218] SLOW spr round 4 (radius: 5)
[00:40:08 -1421.795076] SLOW spr round 5 (radius: 5)
[00:40:12 -1421.795076] SLOW spr round 6 (radius: 10)
[00:40:15 -1421.795075] SLOW spr round 7 (radius: 15)
[00:40:20 -1412.496928] SLOW spr round 8 (radius: 5)
[00:40:25 -1412.496919] SLOW spr round 9 (radius: 10)
[00:40:28 -1412.496919] SLOW spr round 10 (radius: 15)
[00:40:34 -1408.319774] SLOW spr round 11 (radius: 5)
[00:40:38 -1406.496763] SLOW spr round 12 (radius: 5)
[00:40:42 -1405.539775] SLOW spr round 13 (radius: 5)
[00:40:45 -1405.539085] SLOW spr round 14 (radius: 10)
[00:40:49 -1404.160222] SLOW spr round 15 (radius: 5)
[00:40:53 -1404.160219] SLOW spr round 16 (radius: 10)
[00:40:57 -1403.162157] SLOW spr round 17 (radius: 5)
[00:41:01 -1403.162155] SLOW spr round 18 (radius: 10)
[00:41:04 -1403.162155] SLOW spr round 19 (radius: 15)
[00:41:09 -1403.162155] SLOW spr round 20 (radius: 20)
[00:41:16 -1392.888898] SLOW spr round 21 (radius: 5)
[00:41:21 -1378.109104] SLOW spr round 22 (radius: 5)
[00:41:25 -1378.102288] SLOW spr round 23 (radius: 10)
[00:41:28 -1377.776768] SLOW spr round 24 (radius: 5)
[00:41:32 -1377.776617] SLOW spr round 25 (radius: 10)
[00:41:36 -1377.776594] SLOW spr round 26 (radius: 15)
[00:41:41 -1377.776591] SLOW spr round 27 (radius: 20)
[00:41:47 -1374.383458] SLOW spr round 28 (radius: 5)
[00:41:51 -1374.370243] SLOW spr round 29 (radius: 10)
[00:41:55 -1373.825539] SLOW spr round 30 (radius: 5)
[00:41:59 -1373.825534] SLOW spr round 31 (radius: 10)
[00:42:03 -1373.825534] SLOW spr round 32 (radius: 15)
[00:42:08 -1373.825534] SLOW spr round 33 (radius: 20)
[00:42:14 -1373.825534] SLOW spr round 34 (radius: 25)
[00:42:20 -1372.857775] SLOW spr round 35 (radius: 5)
[00:42:24 -1372.852051] SLOW spr round 36 (radius: 10)
[00:42:28 -1372.852051] SLOW spr round 37 (radius: 15)
[00:42:33 -1372.852051] SLOW spr round 38 (radius: 20)
[00:42:39 -1372.331819] SLOW spr round 39 (radius: 5)
[00:42:43 -1372.331360] SLOW spr round 40 (radius: 10)
[00:42:47 -1372.331332] SLOW spr round 41 (radius: 15)
[00:42:52 -1372.331330] SLOW spr round 42 (radius: 20)
[00:42:57 -1372.331330] SLOW spr round 43 (radius: 25)
[00:43:03 -1372.331330] Model parameter optimization (eps = 0.100000)

[00:43:04] ML tree search #11, logLikelihood: -1372.218667

[00:43:04 -3619.097217] Initial branch length optimization
[00:43:04 -2771.359370] Model parameter optimization (eps = 10.000000)
[00:43:05 -2741.219014] AUTODETECT spr round 1 (radius: 5)
[00:43:07 -2262.610282] AUTODETECT spr round 2 (radius: 10)
[00:43:10 -1949.125885] AUTODETECT spr round 3 (radius: 15)
[00:43:14 -1815.545542] AUTODETECT spr round 4 (radius: 20)
[00:43:18 -1734.723524] AUTODETECT spr round 5 (radius: 25)
[00:43:21 -1716.748541] SPR radius for FAST iterations: 25 (autodetect)
[00:43:21 -1716.748541] Model parameter optimization (eps = 3.000000)
[00:43:22 -1713.029484] FAST spr round 1 (radius: 25)
[00:43:25 -1566.639137] FAST spr round 2 (radius: 25)
[00:43:28 -1563.834644] FAST spr round 3 (radius: 25)
[00:43:31 -1563.022849] FAST spr round 4 (radius: 25)
[00:43:34 -1563.021731] Model parameter optimization (eps = 1.000000)
[00:43:34 -1562.998888] SLOW spr round 1 (radius: 5)
[00:43:38 -1562.518517] SLOW spr round 2 (radius: 5)
[00:43:41 -1562.442432] SLOW spr round 3 (radius: 10)
[00:43:45 -1561.906574] SLOW spr round 4 (radius: 5)
[00:43:49 -1561.905230] SLOW spr round 5 (radius: 10)
[00:43:53 -1556.902090] SLOW spr round 6 (radius: 5)
[00:43:57 -1556.367524] SLOW spr round 7 (radius: 5)
[00:44:01 -1556.366742] SLOW spr round 8 (radius: 10)
[00:44:05 -1556.366738] SLOW spr round 9 (radius: 15)
[00:44:10 -1542.788849] SLOW spr round 10 (radius: 5)
[00:44:14 -1536.098186] SLOW spr round 11 (radius: 5)
[00:44:18 -1529.013764] SLOW spr round 12 (radius: 5)
[00:44:22 -1529.011102] SLOW spr round 13 (radius: 10)
[00:44:25 -1529.010150] SLOW spr round 14 (radius: 15)
[00:44:30 -1527.081515] SLOW spr round 15 (radius: 5)
[00:44:35 -1527.075581] SLOW spr round 16 (radius: 10)
[00:44:39 -1526.974424] SLOW spr round 17 (radius: 5)
[00:44:43 -1526.974123] SLOW spr round 18 (radius: 10)
[00:44:47 -1526.974093] SLOW spr round 19 (radius: 15)
[00:44:52 -1526.974088] SLOW spr round 20 (radius: 20)
[00:44:57 -1523.561469] SLOW spr round 21 (radius: 5)
[00:45:02 -1523.558887] SLOW spr round 22 (radius: 10)
[00:45:06 -1523.558829] SLOW spr round 23 (radius: 15)
[00:45:10 -1523.558823] SLOW spr round 24 (radius: 20)
[00:45:15 -1523.558820] SLOW spr round 25 (radius: 25)
[00:45:21 -1516.775663] SLOW spr round 26 (radius: 5)
[00:45:25 -1516.775657] SLOW spr round 27 (radius: 10)
[00:45:30 -1516.775655] SLOW spr round 28 (radius: 15)
[00:45:34 -1516.775654] SLOW spr round 29 (radius: 20)
[00:45:40 -1516.775654] SLOW spr round 30 (radius: 25)
[00:45:45 -1516.775653] Model parameter optimization (eps = 0.100000)

[00:45:46] ML tree search #12, logLikelihood: -1516.564480

[00:45:46 -3577.103128] Initial branch length optimization
[00:45:46 -2774.381248] Model parameter optimization (eps = 10.000000)
[00:45:46 -2770.658101] AUTODETECT spr round 1 (radius: 5)
[00:45:49 -2235.173689] AUTODETECT spr round 2 (radius: 10)
[00:45:52 -1944.339913] AUTODETECT spr round 3 (radius: 15)
[00:45:56 -1742.263352] AUTODETECT spr round 4 (radius: 20)
[00:46:00 -1696.517422] AUTODETECT spr round 5 (radius: 25)
[00:46:03 -1657.851930] SPR radius for FAST iterations: 25 (autodetect)
[00:46:03 -1657.851930] Model parameter optimization (eps = 3.000000)
[00:46:04 -1654.367195] FAST spr round 1 (radius: 25)
[00:46:07 -1529.169159] FAST spr round 2 (radius: 25)
[00:46:10 -1516.683902] FAST spr round 3 (radius: 25)
[00:46:13 -1515.509463] FAST spr round 4 (radius: 25)
[00:46:16 -1514.829528] FAST spr round 5 (radius: 25)
[00:46:19 -1514.355528] FAST spr round 6 (radius: 25)
[00:46:22 -1514.355232] Model parameter optimization (eps = 1.000000)
[00:46:23 -1514.238255] SLOW spr round 1 (radius: 5)
[00:46:26 -1513.858904] SLOW spr round 2 (radius: 5)
[00:46:30 -1513.858535] SLOW spr round 3 (radius: 10)
[00:46:33 -1510.219974] SLOW spr round 4 (radius: 5)
[00:46:37 -1508.748420] SLOW spr round 5 (radius: 5)
[00:46:41 -1508.748398] SLOW spr round 6 (radius: 10)
[00:46:45 -1508.115643] SLOW spr round 7 (radius: 5)
[00:46:49 -1506.876405] SLOW spr round 8 (radius: 5)
[00:46:53 -1506.490997] SLOW spr round 9 (radius: 5)
[00:46:56 -1506.490991] SLOW spr round 10 (radius: 10)
[00:46:59 -1506.490987] SLOW spr round 11 (radius: 15)
[00:47:04 -1486.281590] SLOW spr round 12 (radius: 5)
[00:47:09 -1484.404310] SLOW spr round 13 (radius: 5)
[00:47:12 -1484.350069] SLOW spr round 14 (radius: 10)
[00:47:16 -1484.349701] SLOW spr round 15 (radius: 15)
[00:47:21 -1483.914424] SLOW spr round 16 (radius: 5)
[00:47:25 -1483.485763] SLOW spr round 17 (radius: 5)
[00:47:29 -1483.485543] SLOW spr round 18 (radius: 10)
[00:47:33 -1483.485543] SLOW spr round 19 (radius: 15)
[00:47:38 -1483.485543] SLOW spr round 20 (radius: 20)
[00:47:43 -1463.502043] SLOW spr round 21 (radius: 5)
[00:47:48 -1462.965119] SLOW spr round 22 (radius: 5)
[00:47:52 -1462.964662] SLOW spr round 23 (radius: 10)
[00:47:56 -1462.964599] SLOW spr round 24 (radius: 15)
[00:48:00 -1462.774335] SLOW spr round 25 (radius: 5)
[00:48:05 -1462.774334] SLOW spr round 26 (radius: 10)
[00:48:09 -1462.774334] SLOW spr round 27 (radius: 15)
[00:48:13 -1462.774334] SLOW spr round 28 (radius: 20)
[00:48:19 -1462.774334] SLOW spr round 29 (radius: 25)
[00:48:25 -1459.918271] SLOW spr round 30 (radius: 5)
[00:48:30 -1458.087262] SLOW spr round 31 (radius: 5)
[00:48:33 -1458.086312] SLOW spr round 32 (radius: 10)
[00:48:37 -1458.086158] SLOW spr round 33 (radius: 15)
[00:48:42 -1458.086111] SLOW spr round 34 (radius: 20)
[00:48:47 -1457.333862] SLOW spr round 35 (radius: 5)
[00:48:52 -1457.333854] SLOW spr round 36 (radius: 10)
[00:48:55 -1457.333853] SLOW spr round 37 (radius: 15)
[00:49:00 -1457.333853] SLOW spr round 38 (radius: 20)
[00:49:05 -1437.401793] SLOW spr round 39 (radius: 5)
[00:49:10 -1414.909753] SLOW spr round 40 (radius: 5)
[00:49:14 -1402.373709] SLOW spr round 41 (radius: 5)
[00:49:17 -1395.818217] SLOW spr round 42 (radius: 5)
[00:49:21 -1395.818217] SLOW spr round 43 (radius: 10)
[00:49:24 -1394.725770] SLOW spr round 44 (radius: 5)
[00:49:28 -1394.723883] SLOW spr round 45 (radius: 10)
[00:49:32 -1394.723883] SLOW spr round 46 (radius: 15)
[00:49:37 -1392.507270] SLOW spr round 47 (radius: 5)
[00:49:41 -1391.857694] SLOW spr round 48 (radius: 5)
[00:49:45 -1391.857650] SLOW spr round 49 (radius: 10)
[00:49:49 -1391.857650] SLOW spr round 50 (radius: 15)
[00:49:54 -1391.857650] SLOW spr round 51 (radius: 20)
[00:49:59 -1391.857650] SLOW spr round 52 (radius: 25)
[00:50:04 -1390.927702] SLOW spr round 53 (radius: 5)
[00:50:09 -1390.927188] SLOW spr round 54 (radius: 10)
[00:50:13 -1390.927069] SLOW spr round 55 (radius: 15)
[00:50:18 -1390.927041] SLOW spr round 56 (radius: 20)
[00:50:24 -1389.263577] SLOW spr round 57 (radius: 5)
[00:50:29 -1389.156573] SLOW spr round 58 (radius: 5)
[00:50:33 -1389.156383] SLOW spr round 59 (radius: 10)
[00:50:37 -1389.156348] SLOW spr round 60 (radius: 15)
[00:50:42 -1389.156340] SLOW spr round 61 (radius: 20)
[00:50:48 -1389.156338] SLOW spr round 62 (radius: 25)
[00:50:54 -1383.828056] SLOW spr round 63 (radius: 5)
[00:50:58 -1383.796405] SLOW spr round 64 (radius: 10)
[00:51:02 -1383.795769] SLOW spr round 65 (radius: 15)
[00:51:07 -1383.795724] SLOW spr round 66 (radius: 20)
[00:51:13 -1383.459707] SLOW spr round 67 (radius: 5)
[00:51:17 -1383.459707] SLOW spr round 68 (radius: 10)
[00:51:21 -1383.459707] SLOW spr round 69 (radius: 15)
[00:51:26 -1383.459707] SLOW spr round 70 (radius: 20)
[00:51:32 -1383.459707] SLOW spr round 71 (radius: 25)
[00:51:38 -1383.459707] Model parameter optimization (eps = 0.100000)

[00:51:39] ML tree search #13, logLikelihood: -1383.340337

[00:51:39 -3647.159797] Initial branch length optimization
[00:51:39 -2809.618725] Model parameter optimization (eps = 10.000000)
[00:51:40 -2801.337014] AUTODETECT spr round 1 (radius: 5)
[00:51:42 -2328.786726] AUTODETECT spr round 2 (radius: 10)
[00:51:45 -1972.957151] AUTODETECT spr round 3 (radius: 15)
[00:51:49 -1801.284461] AUTODETECT spr round 4 (radius: 20)
[00:51:52 -1708.362727] AUTODETECT spr round 5 (radius: 25)
[00:51:56 -1628.078411] SPR radius for FAST iterations: 25 (autodetect)
[00:51:56 -1628.078411] Model parameter optimization (eps = 3.000000)
[00:51:57 -1627.860025] FAST spr round 1 (radius: 25)
[00:52:00 -1495.093333] FAST spr round 2 (radius: 25)
[00:52:03 -1476.449567] FAST spr round 3 (radius: 25)
[00:52:06 -1471.380646] FAST spr round 4 (radius: 25)
[00:52:09 -1471.380354] Model parameter optimization (eps = 1.000000)
[00:52:09 -1471.379844] SLOW spr round 1 (radius: 5)
[00:52:12 -1470.630613] SLOW spr round 2 (radius: 5)
[00:52:16 -1470.630034] SLOW spr round 3 (radius: 10)
[00:52:19 -1470.490216] SLOW spr round 4 (radius: 5)
[00:52:23 -1470.490047] SLOW spr round 5 (radius: 10)
[00:52:27 -1470.056543] SLOW spr round 6 (radius: 5)
[00:52:31 -1468.724054] SLOW spr round 7 (radius: 5)
[00:52:35 -1468.722769] SLOW spr round 8 (radius: 10)
[00:52:38 -1468.722758] SLOW spr round 9 (radius: 15)
[00:52:43 -1468.661249] SLOW spr round 10 (radius: 20)
[00:52:48 -1468.092981] SLOW spr round 11 (radius: 5)
[00:52:53 -1466.992852] SLOW spr round 12 (radius: 5)
[00:52:56 -1466.992640] SLOW spr round 13 (radius: 10)
[00:53:00 -1466.992450] SLOW spr round 14 (radius: 15)
[00:53:05 -1466.992261] SLOW spr round 15 (radius: 20)
[00:53:10 -1452.712275] SLOW spr round 16 (radius: 5)
[00:53:15 -1436.869279] SLOW spr round 17 (radius: 5)
[00:53:18 -1434.932063] SLOW spr round 18 (radius: 5)
[00:53:22 -1434.931669] SLOW spr round 19 (radius: 10)
[00:53:25 -1434.931477] SLOW spr round 20 (radius: 15)
[00:53:30 -1409.175731] SLOW spr round 21 (radius: 5)
[00:53:35 -1404.826791] SLOW spr round 22 (radius: 5)
[00:53:39 -1404.825647] SLOW spr round 23 (radius: 10)
[00:53:42 -1404.825413] SLOW spr round 24 (radius: 15)
[00:53:47 -1400.133804] SLOW spr round 25 (radius: 5)
[00:53:51 -1389.834811] SLOW spr round 26 (radius: 5)
[00:53:55 -1389.834233] SLOW spr round 27 (radius: 10)
[00:53:59 -1389.834015] SLOW spr round 28 (radius: 15)
[00:54:03 -1389.279788] SLOW spr round 29 (radius: 5)
[00:54:08 -1389.279788] SLOW spr round 30 (radius: 10)
[00:54:11 -1389.279788] SLOW spr round 31 (radius: 15)
[00:54:16 -1389.279788] SLOW spr round 32 (radius: 20)
[00:54:22 -1388.586075] SLOW spr round 33 (radius: 5)
[00:54:27 -1388.585903] SLOW spr round 34 (radius: 10)
[00:54:30 -1388.585895] SLOW spr round 35 (radius: 15)
[00:54:35 -1388.585894] SLOW spr round 36 (radius: 20)
[00:54:41 -1388.423326] SLOW spr round 37 (radius: 5)
[00:54:45 -1388.423326] SLOW spr round 38 (radius: 10)
[00:54:49 -1388.423326] SLOW spr round 39 (radius: 15)
[00:54:54 -1388.423326] SLOW spr round 40 (radius: 20)
[00:55:00 -1388.423326] SLOW spr round 41 (radius: 25)
[00:55:06 -1387.600094] SLOW spr round 42 (radius: 5)
[00:55:10 -1387.511010] SLOW spr round 43 (radius: 10)
[00:55:14 -1386.314751] SLOW spr round 44 (radius: 5)
[00:55:18 -1386.314604] SLOW spr round 45 (radius: 10)
[00:55:21 -1386.314603] SLOW spr round 46 (radius: 15)
[00:55:26 -1385.590346] SLOW spr round 47 (radius: 5)
[00:55:30 -1385.589594] SLOW spr round 48 (radius: 10)
[00:55:34 -1385.589591] SLOW spr round 49 (radius: 15)
[00:55:39 -1385.589591] SLOW spr round 50 (radius: 20)
[00:55:44 -1385.589591] SLOW spr round 51 (radius: 25)
[00:55:50 -1385.029403] SLOW spr round 52 (radius: 5)
[00:55:55 -1385.025130] SLOW spr round 53 (radius: 10)
[00:55:59 -1385.025130] SLOW spr round 54 (radius: 15)
[00:56:03 -1385.025130] SLOW spr round 55 (radius: 20)
[00:56:09 -1385.025130] SLOW spr round 56 (radius: 25)
[00:56:15 -1384.779920] SLOW spr round 57 (radius: 5)
[00:56:19 -1384.779919] SLOW spr round 58 (radius: 10)
[00:56:23 -1384.779919] SLOW spr round 59 (radius: 15)
[00:56:28 -1384.779919] SLOW spr round 60 (radius: 20)
[00:56:33 -1384.779919] SLOW spr round 61 (radius: 25)
[00:56:39 -1384.779919] Model parameter optimization (eps = 0.100000)

[00:56:39] ML tree search #14, logLikelihood: -1384.768657

[00:56:39 -3649.808861] Initial branch length optimization
[00:56:39 -2805.176756] Model parameter optimization (eps = 10.000000)
[00:56:41 -2792.615978] AUTODETECT spr round 1 (radius: 5)
[00:56:43 -2275.067501] AUTODETECT spr round 2 (radius: 10)
[00:56:47 -1942.066484] AUTODETECT spr round 3 (radius: 15)
[00:56:50 -1746.106649] AUTODETECT spr round 4 (radius: 20)
[00:56:54 -1653.325715] AUTODETECT spr round 5 (radius: 25)
[00:56:58 -1625.658738] SPR radius for FAST iterations: 25 (autodetect)
[00:56:58 -1625.658738] Model parameter optimization (eps = 3.000000)
[00:56:59 -1603.442606] FAST spr round 1 (radius: 25)
[00:57:02 -1502.389876] FAST spr round 2 (radius: 25)
[00:57:05 -1497.744671] FAST spr round 3 (radius: 25)
[00:57:08 -1495.431615] FAST spr round 4 (radius: 25)
[00:57:11 -1495.430789] Model parameter optimization (eps = 1.000000)
[00:57:11 -1495.069339] SLOW spr round 1 (radius: 5)
[00:57:15 -1492.759422] SLOW spr round 2 (radius: 5)
[00:57:18 -1492.759188] SLOW spr round 3 (radius: 10)
[00:57:21 -1476.626033] SLOW spr round 4 (radius: 5)
[00:57:26 -1452.661279] SLOW spr round 5 (radius: 5)
[00:57:29 -1452.661273] SLOW spr round 6 (radius: 10)
[00:57:33 -1449.753918] SLOW spr round 7 (radius: 5)
[00:57:37 -1449.753918] SLOW spr round 8 (radius: 10)
[00:57:41 -1448.823207] SLOW spr round 9 (radius: 5)
[00:57:45 -1448.823203] SLOW spr round 10 (radius: 10)
[00:57:48 -1448.759100] SLOW spr round 11 (radius: 15)
[00:57:54 -1440.847594] SLOW spr round 12 (radius: 5)
[00:57:58 -1439.139612] SLOW spr round 13 (radius: 5)
[00:58:02 -1439.138959] SLOW spr round 14 (radius: 10)
[00:58:06 -1439.138905] SLOW spr round 15 (radius: 15)
[00:58:12 -1435.336614] SLOW spr round 16 (radius: 5)
[00:58:16 -1422.316157] SLOW spr round 17 (radius: 5)
[00:58:20 -1422.143875] SLOW spr round 18 (radius: 5)
[00:58:23 -1422.143872] SLOW spr round 19 (radius: 10)
[00:58:27 -1422.143872] SLOW spr round 20 (radius: 15)
[00:58:32 -1419.690252] SLOW spr round 21 (radius: 5)
[00:58:37 -1417.439013] SLOW spr round 22 (radius: 5)
[00:58:40 -1417.437863] SLOW spr round 23 (radius: 10)
[00:58:44 -1417.437519] SLOW spr round 24 (radius: 15)
[00:58:49 -1417.109012] SLOW spr round 25 (radius: 5)
[00:58:54 -1417.108973] SLOW spr round 26 (radius: 10)
[00:58:58 -1416.738740] SLOW spr round 27 (radius: 5)
[00:59:02 -1416.738737] SLOW spr round 28 (radius: 10)
[00:59:05 -1416.738736] SLOW spr round 29 (radius: 15)
[00:59:11 -1416.622064] SLOW spr round 30 (radius: 5)
[00:59:15 -1416.622064] SLOW spr round 31 (radius: 10)
[00:59:19 -1416.622064] SLOW spr round 32 (radius: 15)
[00:59:24 -1415.460511] SLOW spr round 33 (radius: 5)
[00:59:28 -1415.460510] SLOW spr round 34 (radius: 10)
[00:59:32 -1415.460510] SLOW spr round 35 (radius: 15)
[00:59:37 -1415.460510] SLOW spr round 36 (radius: 20)
[00:59:44 -1402.318933] SLOW spr round 37 (radius: 5)
[00:59:49 -1402.318933] SLOW spr round 38 (radius: 10)
[00:59:53 -1402.318933] SLOW spr round 39 (radius: 15)
[00:59:58 -1400.915590] SLOW spr round 40 (radius: 5)
[01:00:03 -1400.805965] SLOW spr round 41 (radius: 5)
[01:00:06 -1400.805692] SLOW spr round 42 (radius: 10)
[01:00:10 -1400.805692] SLOW spr round 43 (radius: 15)
[01:00:15 -1400.805690] SLOW spr round 44 (radius: 20)
[01:00:22 -1400.805667] SLOW spr round 45 (radius: 25)
[01:00:29 -1375.848465] SLOW spr round 46 (radius: 5)
[01:00:33 -1372.928391] SLOW spr round 47 (radius: 5)
[01:00:37 -1372.752865] SLOW spr round 48 (radius: 5)
[01:00:41 -1370.607992] SLOW spr round 49 (radius: 5)
[01:00:44 -1370.607535] SLOW spr round 50 (radius: 10)
[01:00:47 -1370.607525] SLOW spr round 51 (radius: 15)
[01:00:52 -1370.398430] SLOW spr round 52 (radius: 5)
[01:00:57 -1370.204431] SLOW spr round 53 (radius: 5)
[01:01:00 -1370.204431] SLOW spr round 54 (radius: 10)
[01:01:04 -1370.204431] SLOW spr round 55 (radius: 15)
[01:01:09 -1370.204431] SLOW spr round 56 (radius: 20)
[01:01:14 -1370.204431] SLOW spr round 57 (radius: 25)
[01:01:19 -1369.352416] SLOW spr round 58 (radius: 5)
[01:01:24 -1369.342217] SLOW spr round 59 (radius: 10)
[01:01:28 -1369.342212] SLOW spr round 60 (radius: 15)
[01:01:32 -1369.342212] SLOW spr round 61 (radius: 20)
[01:01:37 -1369.342212] SLOW spr round 62 (radius: 25)
[01:01:43 -1369.342212] Model parameter optimization (eps = 0.100000)

[01:01:44] ML tree search #15, logLikelihood: -1369.208883

[01:01:44 -3656.694448] Initial branch length optimization
[01:01:44 -2854.936235] Model parameter optimization (eps = 10.000000)
[01:01:46 -2804.886415] AUTODETECT spr round 1 (radius: 5)
[01:01:49 -2315.545129] AUTODETECT spr round 2 (radius: 10)
[01:01:52 -1957.151737] AUTODETECT spr round 3 (radius: 15)
[01:01:56 -1695.381079] AUTODETECT spr round 4 (radius: 20)
[01:02:00 -1612.426167] AUTODETECT spr round 5 (radius: 25)
[01:02:03 -1602.510844] SPR radius for FAST iterations: 25 (autodetect)
[01:02:03 -1602.510844] Model parameter optimization (eps = 3.000000)
[01:02:04 -1601.051488] FAST spr round 1 (radius: 25)
[01:02:07 -1489.489691] FAST spr round 2 (radius: 25)
[01:02:10 -1469.739365] FAST spr round 3 (radius: 25)
[01:02:13 -1461.773666] FAST spr round 4 (radius: 25)
[01:02:16 -1459.164918] FAST spr round 5 (radius: 25)
[01:02:19 -1459.131425] Model parameter optimization (eps = 1.000000)
[01:02:19 -1459.114840] SLOW spr round 1 (radius: 5)
[01:02:23 -1452.153051] SLOW spr round 2 (radius: 5)
[01:02:26 -1452.140425] SLOW spr round 3 (radius: 10)
[01:02:30 -1451.801154] SLOW spr round 4 (radius: 5)
[01:02:34 -1451.801154] SLOW spr round 5 (radius: 10)
[01:02:38 -1451.680101] SLOW spr round 6 (radius: 5)
[01:02:42 -1451.680047] SLOW spr round 7 (radius: 10)
[01:02:46 -1451.680046] SLOW spr round 8 (radius: 15)
[01:02:50 -1436.379630] SLOW spr round 9 (radius: 5)
[01:02:55 -1428.392058] SLOW spr round 10 (radius: 5)
[01:02:59 -1428.392007] SLOW spr round 11 (radius: 10)
[01:03:02 -1427.783767] SLOW spr round 12 (radius: 5)
[01:03:06 -1427.783558] SLOW spr round 13 (radius: 10)
[01:03:10 -1427.337483] SLOW spr round 14 (radius: 5)
[01:03:14 -1427.337479] SLOW spr round 15 (radius: 10)
[01:03:18 -1427.337479] SLOW spr round 16 (radius: 15)
[01:03:22 -1421.748572] SLOW spr round 17 (radius: 5)
[01:03:27 -1419.999969] SLOW spr round 18 (radius: 5)
[01:03:30 -1419.978115] SLOW spr round 19 (radius: 10)
[01:03:34 -1419.757309] SLOW spr round 20 (radius: 5)
[01:03:38 -1419.757187] SLOW spr round 21 (radius: 10)
[01:03:42 -1417.278786] SLOW spr round 22 (radius: 5)
[01:03:46 -1417.278782] SLOW spr round 23 (radius: 10)
[01:03:50 -1417.278782] SLOW spr round 24 (radius: 15)
[01:03:54 -1416.874730] SLOW spr round 25 (radius: 5)
[01:03:59 -1415.722162] SLOW spr round 26 (radius: 5)
[01:04:02 -1415.722159] SLOW spr round 27 (radius: 10)
[01:04:06 -1415.722159] SLOW spr round 28 (radius: 15)
[01:04:11 -1414.917700] SLOW spr round 29 (radius: 5)
[01:04:15 -1414.917578] SLOW spr round 30 (radius: 10)
[01:04:19 -1414.917494] SLOW spr round 31 (radius: 15)
[01:04:24 -1414.390479] SLOW spr round 32 (radius: 5)
[01:04:28 -1414.390465] SLOW spr round 33 (radius: 10)
[01:04:32 -1414.280990] SLOW spr round 34 (radius: 5)
[01:04:36 -1414.280990] SLOW spr round 35 (radius: 10)
[01:04:40 -1414.280990] SLOW spr round 36 (radius: 15)
[01:04:45 -1412.193562] SLOW spr round 37 (radius: 5)
[01:04:49 -1412.193558] SLOW spr round 38 (radius: 10)
[01:04:53 -1412.193558] SLOW spr round 39 (radius: 15)
[01:04:58 -1412.193558] SLOW spr round 40 (radius: 20)
[01:05:03 -1401.864643] SLOW spr round 41 (radius: 5)
[01:05:08 -1399.675030] SLOW spr round 42 (radius: 5)
[01:05:12 -1398.202014] SLOW spr round 43 (radius: 5)
[01:05:15 -1398.202013] SLOW spr round 44 (radius: 10)
[01:05:19 -1397.302785] SLOW spr round 45 (radius: 5)
[01:05:23 -1397.302785] SLOW spr round 46 (radius: 10)
[01:05:27 -1397.302785] SLOW spr round 47 (radius: 15)
[01:05:31 -1397.302785] SLOW spr round 48 (radius: 20)
[01:05:37 -1395.928088] SLOW spr round 49 (radius: 5)
[01:05:42 -1395.928088] SLOW spr round 50 (radius: 10)
[01:05:45 -1395.928088] SLOW spr round 51 (radius: 15)
[01:05:50 -1395.928088] SLOW spr round 52 (radius: 20)
[01:05:56 -1395.928088] SLOW spr round 53 (radius: 25)
[01:06:02 -1390.953461] SLOW spr round 54 (radius: 5)
[01:06:07 -1390.922404] SLOW spr round 55 (radius: 10)
[01:06:11 -1390.922360] SLOW spr round 56 (radius: 15)
[01:06:16 -1390.922072] SLOW spr round 57 (radius: 20)
[01:06:21 -1390.167668] SLOW spr round 58 (radius: 5)
[01:06:26 -1390.165652] SLOW spr round 59 (radius: 10)
[01:06:30 -1390.165538] SLOW spr round 60 (radius: 15)
[01:06:35 -1390.165458] SLOW spr round 61 (radius: 20)
[01:06:41 -1389.152106] SLOW spr round 62 (radius: 5)
[01:06:45 -1389.152102] SLOW spr round 63 (radius: 10)
[01:06:49 -1389.152102] SLOW spr round 64 (radius: 15)
[01:06:54 -1389.152102] SLOW spr round 65 (radius: 20)
[01:06:59 -1389.152102] SLOW spr round 66 (radius: 25)
[01:07:05 -1386.524887] SLOW spr round 67 (radius: 5)
[01:07:10 -1386.524887] SLOW spr round 68 (radius: 10)
[01:07:14 -1386.524887] SLOW spr round 69 (radius: 15)
[01:07:19 -1386.524887] SLOW spr round 70 (radius: 20)
[01:07:24 -1386.524887] SLOW spr round 71 (radius: 25)
[01:07:30 -1385.945604] SLOW spr round 72 (radius: 5)
[01:07:34 -1385.945604] SLOW spr round 73 (radius: 10)
[01:07:38 -1385.945604] SLOW spr round 74 (radius: 15)
[01:07:43 -1385.945604] SLOW spr round 75 (radius: 20)
[01:07:48 -1385.945604] SLOW spr round 76 (radius: 25)
[01:07:54 -1385.945604] Model parameter optimization (eps = 0.100000)

[01:07:54] ML tree search #16, logLikelihood: -1385.907618

[01:07:54 -3659.839927] Initial branch length optimization
[01:07:54 -2808.806199] Model parameter optimization (eps = 10.000000)
[01:07:55 -2804.194237] AUTODETECT spr round 1 (radius: 5)
[01:07:58 -2223.221593] AUTODETECT spr round 2 (radius: 10)
[01:08:01 -1963.287261] AUTODETECT spr round 3 (radius: 15)
[01:08:04 -1772.157336] AUTODETECT spr round 4 (radius: 20)
[01:08:08 -1614.557000] AUTODETECT spr round 5 (radius: 25)
[01:08:11 -1592.989854] SPR radius for FAST iterations: 25 (autodetect)
[01:08:11 -1592.989854] Model parameter optimization (eps = 3.000000)
[01:08:12 -1590.674187] FAST spr round 1 (radius: 25)
[01:08:15 -1505.392391] FAST spr round 2 (radius: 25)
[01:08:18 -1499.777123] FAST spr round 3 (radius: 25)
[01:08:21 -1499.737501] Model parameter optimization (eps = 1.000000)
[01:08:22 -1499.377325] SLOW spr round 1 (radius: 5)
[01:08:25 -1480.278308] SLOW spr round 2 (radius: 5)
[01:08:29 -1480.107004] SLOW spr round 3 (radius: 5)
[01:08:32 -1478.467174] SLOW spr round 4 (radius: 5)
[01:08:35 -1478.467138] SLOW spr round 5 (radius: 10)
[01:08:39 -1466.125648] SLOW spr round 6 (radius: 5)
[01:08:43 -1460.293861] SLOW spr round 7 (radius: 5)
[01:08:47 -1460.293429] SLOW spr round 8 (radius: 10)
[01:08:50 -1460.293426] SLOW spr round 9 (radius: 15)
[01:08:56 -1432.810386] SLOW spr round 10 (radius: 5)
[01:09:00 -1432.726092] SLOW spr round 11 (radius: 10)
[01:09:04 -1432.725460] SLOW spr round 12 (radius: 15)
[01:09:09 -1423.673432] SLOW spr round 13 (radius: 5)
[01:09:13 -1423.673425] SLOW spr round 14 (radius: 10)
[01:09:17 -1423.673424] SLOW spr round 15 (radius: 15)
[01:09:21 -1423.254331] SLOW spr round 16 (radius: 5)
[01:09:26 -1423.253660] SLOW spr round 17 (radius: 10)
[01:09:29 -1423.253646] SLOW spr round 18 (radius: 15)
[01:09:34 -1423.253645] SLOW spr round 19 (radius: 20)
[01:09:39 -1407.074998] SLOW spr round 20 (radius: 5)
[01:09:44 -1407.072580] SLOW spr round 21 (radius: 10)
[01:09:47 -1407.072317] SLOW spr round 22 (radius: 15)
[01:09:52 -1407.072281] SLOW spr round 23 (radius: 20)
[01:09:58 -1407.072276] SLOW spr round 24 (radius: 25)
[01:10:04 -1395.086103] SLOW spr round 25 (radius: 5)
[01:10:08 -1382.761722] SLOW spr round 26 (radius: 5)
[01:10:12 -1378.098286] SLOW spr round 27 (radius: 5)
[01:10:16 -1378.098251] SLOW spr round 28 (radius: 10)
[01:10:19 -1378.098250] SLOW spr round 29 (radius: 15)
[01:10:24 -1375.699804] SLOW spr round 30 (radius: 5)
[01:10:28 -1375.699804] SLOW spr round 31 (radius: 10)
[01:10:31 -1375.699804] SLOW spr round 32 (radius: 15)
[01:10:36 -1375.699804] SLOW spr round 33 (radius: 20)
[01:10:41 -1375.699804] SLOW spr round 34 (radius: 25)
[01:10:47 -1374.705686] SLOW spr round 35 (radius: 5)
[01:10:51 -1374.705686] SLOW spr round 36 (radius: 10)
[01:10:55 -1374.705686] SLOW spr round 37 (radius: 15)
[01:10:59 -1372.720886] SLOW spr round 38 (radius: 5)
[01:11:04 -1372.720883] SLOW spr round 39 (radius: 10)
[01:11:07 -1372.720883] SLOW spr round 40 (radius: 15)
[01:11:12 -1372.720883] SLOW spr round 41 (radius: 20)
[01:11:17 -1372.720883] SLOW spr round 42 (radius: 25)
[01:11:23 -1372.696220] Model parameter optimization (eps = 0.100000)

[01:11:23] ML tree search #17, logLikelihood: -1372.340667

[01:11:23 -3593.555474] Initial branch length optimization
[01:11:23 -2784.035949] Model parameter optimization (eps = 10.000000)
[01:11:24 -2778.198956] AUTODETECT spr round 1 (radius: 5)
[01:11:26 -2260.540780] AUTODETECT spr round 2 (radius: 10)
[01:11:29 -1962.665581] AUTODETECT spr round 3 (radius: 15)
[01:11:33 -1722.789015] AUTODETECT spr round 4 (radius: 20)
[01:11:37 -1672.909789] AUTODETECT spr round 5 (radius: 25)
[01:11:40 -1558.254317] SPR radius for FAST iterations: 25 (autodetect)
[01:11:41 -1558.254317] Model parameter optimization (eps = 3.000000)
[01:11:41 -1551.861228] FAST spr round 1 (radius: 25)
[01:11:44 -1456.092738] FAST spr round 2 (radius: 25)
[01:11:48 -1448.347843] FAST spr round 3 (radius: 25)
[01:11:50 -1430.650798] FAST spr round 4 (radius: 25)
[01:11:53 -1430.650798] Model parameter optimization (eps = 1.000000)
[01:11:53 -1430.634604] SLOW spr round 1 (radius: 5)
[01:11:57 -1430.561763] SLOW spr round 2 (radius: 10)
[01:12:01 -1426.063138] SLOW spr round 3 (radius: 5)
[01:12:05 -1426.062548] SLOW spr round 4 (radius: 10)
[01:12:08 -1423.629482] SLOW spr round 5 (radius: 5)
[01:12:13 -1423.628765] SLOW spr round 6 (radius: 10)
[01:12:16 -1419.349734] SLOW spr round 7 (radius: 5)
[01:12:20 -1419.349733] SLOW spr round 8 (radius: 10)
[01:12:24 -1419.349732] SLOW spr round 9 (radius: 15)
[01:12:29 -1400.982590] SLOW spr round 10 (radius: 5)
[01:12:33 -1399.857830] SLOW spr round 11 (radius: 5)
[01:12:37 -1399.857829] SLOW spr round 12 (radius: 10)
[01:12:40 -1399.857829] SLOW spr round 13 (radius: 15)
[01:12:45 -1399.857829] SLOW spr round 14 (radius: 20)
[01:12:51 -1398.125586] SLOW spr round 15 (radius: 5)
[01:12:55 -1394.311210] SLOW spr round 16 (radius: 5)
[01:12:59 -1394.311209] SLOW spr round 17 (radius: 10)
[01:13:02 -1394.311209] SLOW spr round 18 (radius: 15)
[01:13:07 -1394.311209] SLOW spr round 19 (radius: 20)
[01:13:12 -1394.311209] SLOW spr round 20 (radius: 25)
[01:13:18 -1380.007791] SLOW spr round 21 (radius: 5)
[01:13:22 -1378.604424] SLOW spr round 22 (radius: 5)
[01:13:26 -1378.604423] SLOW spr round 23 (radius: 10)
[01:13:29 -1378.604423] SLOW spr round 24 (radius: 15)
[01:13:34 -1378.604423] SLOW spr round 25 (radius: 20)
[01:13:39 -1378.604420] SLOW spr round 26 (radius: 25)
[01:13:44 -1378.604420] Model parameter optimization (eps = 0.100000)

[01:13:45] ML tree search #18, logLikelihood: -1378.353923

[01:13:45 -3676.235400] Initial branch length optimization
[01:13:45 -2814.903473] Model parameter optimization (eps = 10.000000)
[01:13:45 -2808.573468] AUTODETECT spr round 1 (radius: 5)
[01:13:48 -2277.091231] AUTODETECT spr round 2 (radius: 10)
[01:13:51 -1965.231219] AUTODETECT spr round 3 (radius: 15)
[01:13:55 -1670.259221] AUTODETECT spr round 4 (radius: 20)
[01:13:58 -1598.077821] AUTODETECT spr round 5 (radius: 25)
[01:14:02 -1582.724308] SPR radius for FAST iterations: 25 (autodetect)
[01:14:02 -1582.724308] Model parameter optimization (eps = 3.000000)
[01:14:03 -1566.543890] FAST spr round 1 (radius: 25)
[01:14:06 -1469.054521] FAST spr round 2 (radius: 25)
[01:14:09 -1453.312533] FAST spr round 3 (radius: 25)
[01:14:12 -1450.124059] FAST spr round 4 (radius: 25)
[01:14:15 -1450.123385] Model parameter optimization (eps = 1.000000)
[01:14:15 -1450.120925] SLOW spr round 1 (radius: 5)
[01:14:19 -1447.442031] SLOW spr round 2 (radius: 5)
[01:14:22 -1447.440482] SLOW spr round 3 (radius: 10)
[01:14:26 -1447.440130] SLOW spr round 4 (radius: 15)
[01:14:30 -1435.140669] SLOW spr round 5 (radius: 5)
[01:14:35 -1434.370085] SLOW spr round 6 (radius: 5)
[01:14:39 -1434.369925] SLOW spr round 7 (radius: 10)
[01:14:42 -1434.117513] SLOW spr round 8 (radius: 5)
[01:14:46 -1434.117485] SLOW spr round 9 (radius: 10)
[01:14:50 -1434.117464] SLOW spr round 10 (radius: 15)
[01:14:54 -1434.062201] SLOW spr round 11 (radius: 20)
[01:14:59 -1428.409957] SLOW spr round 12 (radius: 5)
[01:15:04 -1427.289325] SLOW spr round 13 (radius: 5)
[01:15:08 -1427.288962] SLOW spr round 14 (radius: 10)
[01:15:11 -1427.288838] SLOW spr round 15 (radius: 15)
[01:15:16 -1426.891206] SLOW spr round 16 (radius: 5)
[01:15:20 -1425.938960] SLOW spr round 17 (radius: 5)
[01:15:24 -1425.938843] SLOW spr round 18 (radius: 10)
[01:15:27 -1425.938728] SLOW spr round 19 (radius: 15)
[01:15:31 -1425.938614] SLOW spr round 20 (radius: 20)
[01:15:36 -1425.938500] SLOW spr round 21 (radius: 25)
[01:15:41 -1424.347042] SLOW spr round 22 (radius: 5)
[01:15:45 -1424.346831] SLOW spr round 23 (radius: 10)
[01:15:49 -1424.346716] SLOW spr round 24 (radius: 15)
[01:15:53 -1424.346601] SLOW spr round 25 (radius: 20)
[01:15:58 -1424.346485] SLOW spr round 26 (radius: 25)
[01:16:04 -1414.107617] SLOW spr round 27 (radius: 5)
[01:16:08 -1404.007755] SLOW spr round 28 (radius: 5)
[01:16:12 -1404.007624] SLOW spr round 29 (radius: 10)
[01:16:16 -1404.007516] SLOW spr round 30 (radius: 15)
[01:16:20 -1404.007502] SLOW spr round 31 (radius: 20)
[01:16:25 -1403.875359] SLOW spr round 32 (radius: 5)
[01:16:29 -1403.875351] SLOW spr round 33 (radius: 10)
[01:16:33 -1403.875347] SLOW spr round 34 (radius: 15)
[01:16:37 -1402.639664] SLOW spr round 35 (radius: 5)
[01:16:42 -1402.639654] SLOW spr round 36 (radius: 10)
[01:16:45 -1402.639654] SLOW spr round 37 (radius: 15)
[01:16:50 -1402.639653] SLOW spr round 38 (radius: 20)
[01:16:55 -1402.639653] SLOW spr round 39 (radius: 25)
[01:17:00 -1400.752522] SLOW spr round 40 (radius: 5)
[01:17:04 -1400.752519] SLOW spr round 41 (radius: 10)
[01:17:08 -1400.752519] SLOW spr round 42 (radius: 15)
[01:17:12 -1400.752519] SLOW spr round 43 (radius: 20)
[01:17:18 -1400.752518] SLOW spr round 44 (radius: 25)
[01:17:23 -1400.752518] Model parameter optimization (eps = 0.100000)

[01:17:23] ML tree search #19, logLikelihood: -1400.688946

[01:17:23 -3635.871691] Initial branch length optimization
[01:17:23 -2804.369474] Model parameter optimization (eps = 10.000000)
[01:17:25 -2783.479541] AUTODETECT spr round 1 (radius: 5)
[01:17:27 -2262.944337] AUTODETECT spr round 2 (radius: 10)
[01:17:31 -1985.990184] AUTODETECT spr round 3 (radius: 15)
[01:17:34 -1781.755465] AUTODETECT spr round 4 (radius: 20)
[01:17:38 -1684.753927] AUTODETECT spr round 5 (radius: 25)
[01:17:42 -1649.025254] SPR radius for FAST iterations: 25 (autodetect)
[01:17:42 -1649.025254] Model parameter optimization (eps = 3.000000)
[01:17:43 -1643.930183] FAST spr round 1 (radius: 25)
[01:17:46 -1491.583868] FAST spr round 2 (radius: 25)
[01:17:49 -1476.388185] FAST spr round 3 (radius: 25)
[01:17:51 -1473.719035] FAST spr round 4 (radius: 25)
[01:17:54 -1473.121093] FAST spr round 5 (radius: 25)
[01:17:57 -1473.120890] Model parameter optimization (eps = 1.000000)
[01:17:57 -1472.702263] SLOW spr round 1 (radius: 5)
[01:18:01 -1455.658603] SLOW spr round 2 (radius: 5)
[01:18:04 -1455.657769] SLOW spr round 3 (radius: 10)
[01:18:08 -1445.128074] SLOW spr round 4 (radius: 5)
[01:18:12 -1444.251048] SLOW spr round 5 (radius: 5)
[01:18:15 -1444.251018] SLOW spr round 6 (radius: 10)
[01:18:19 -1443.835082] SLOW spr round 7 (radius: 5)
[01:18:23 -1443.835075] SLOW spr round 8 (radius: 10)
[01:18:27 -1443.264544] SLOW spr round 9 (radius: 5)
[01:18:31 -1442.558760] SLOW spr round 10 (radius: 5)
[01:18:34 -1442.558757] SLOW spr round 11 (radius: 10)
[01:18:38 -1442.558757] SLOW spr round 12 (radius: 15)
[01:18:43 -1437.712525] SLOW spr round 13 (radius: 5)
[01:18:47 -1436.201441] SLOW spr round 14 (radius: 5)
[01:18:51 -1435.782448] SLOW spr round 15 (radius: 5)
[01:18:54 -1435.782444] SLOW spr round 16 (radius: 10)
[01:18:58 -1432.058326] SLOW spr round 17 (radius: 5)
[01:19:02 -1432.058217] SLOW spr round 18 (radius: 10)
[01:19:06 -1432.058211] SLOW spr round 19 (radius: 15)
[01:19:10 -1432.058211] SLOW spr round 20 (radius: 20)
[01:19:16 -1430.628541] SLOW spr round 21 (radius: 5)
[01:19:21 -1429.606199] SLOW spr round 22 (radius: 5)
[01:19:24 -1429.606199] SLOW spr round 23 (radius: 10)
[01:19:28 -1429.064217] SLOW spr round 24 (radius: 5)
[01:19:32 -1429.064215] SLOW spr round 25 (radius: 10)
[01:19:36 -1429.064215] SLOW spr round 26 (radius: 15)
[01:19:41 -1429.064215] SLOW spr round 27 (radius: 20)
[01:19:46 -1429.064215] SLOW spr round 28 (radius: 25)
[01:19:53 -1411.636857] SLOW spr round 29 (radius: 5)
[01:19:58 -1397.738793] SLOW spr round 30 (radius: 5)
[01:20:02 -1395.793541] SLOW spr round 31 (radius: 5)
[01:20:05 -1395.793532] SLOW spr round 32 (radius: 10)
[01:20:09 -1395.793532] SLOW spr round 33 (radius: 15)
[01:20:13 -1395.793532] SLOW spr round 34 (radius: 20)
[01:20:19 -1395.793532] SLOW spr round 35 (radius: 25)
[01:20:26 -1395.013850] SLOW spr round 36 (radius: 5)
[01:20:30 -1390.407840] SLOW spr round 37 (radius: 5)
[01:20:34 -1390.407830] SLOW spr round 38 (radius: 10)
[01:20:38 -1390.076144] SLOW spr round 39 (radius: 5)
[01:20:42 -1390.076144] SLOW spr round 40 (radius: 10)
[01:20:46 -1390.076144] SLOW spr round 41 (radius: 15)
[01:20:50 -1390.076144] SLOW spr round 42 (radius: 20)
[01:20:56 -1390.076144] SLOW spr round 43 (radius: 25)
[01:21:03 -1390.076144] Model parameter optimization (eps = 0.100000)

[01:21:03] ML tree search #20, logLikelihood: -1390.048662


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.072717,0.117433) (0.000073,0.408798) (0.727166,0.923313) (0.200045,1.599788) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -1369.208883

AIC score: 3832.417765 / AICc score: 603344.417765 / BIC score: 3618.780303
Free parameters (model + branch lengths): 547

WARNING: Number of free parameters (K=547) is larger than alignment size (n=5).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 127 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H0J4/3_mltree/Q9H0J4.raxml.bestTreeCollapsed
Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H0J4/3_mltree/Q9H0J4.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H0J4/3_mltree/Q9H0J4.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H0J4/3_mltree/Q9H0J4.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9H0J4/3_mltree/Q9H0J4.raxml.log

Analysis started: 06-Jul-2021 17:25:00 / finished: 06-Jul-2021 18:46:04

Elapsed time: 4863.444 seconds

Consumed energy: 437.142 Wh (= 2 km in an electric car, or 11 km with an e-scooter!)