RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 12-Jul-2021 18:00:57 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C0A1/2_msa/Q9C0A1_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C0A1/3_mltree/Q9C0A1.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C0A1/4_raxmlng_ancestral/Q9C0A1 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626102057 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C0A1/2_msa/Q9C0A1_nogap_msa.fasta [00:00:00] Loaded alignment with 925 taxa and 2572 sites WARNING: Sequences tr_A0A1D5P0W7_A0A1D5P0W7_CHICK_9031 and sp_O73590_ZFHX4_CHICK_9031 are exactly identical! WARNING: Sequences tr_F1NV70_F1NV70_CHICK_9031 and tr_H0Z1Q2_H0Z1Q2_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NV70_F1NV70_CHICK_9031 and tr_U3JJD3_U3JJD3_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NV70_F1NV70_CHICK_9031 and tr_A0A2I0MDP3_A0A2I0MDP3_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1NV70_F1NV70_CHICK_9031 and tr_A0A1U7S4R9_A0A1U7S4R9_ALLSI_38654 are exactly identical! WARNING: Sequences sp_O88609_LMX1B_MOUSE_10090 and tr_M3YR06_M3YR06_MUSPF_9669 are exactly identical! WARNING: Sequences sp_O88609_LMX1B_MOUSE_10090 and tr_G3V877_G3V877_RAT_10116 are exactly identical! WARNING: Sequences sp_O88609_LMX1B_MOUSE_10090 and tr_I3NEG6_I3NEG6_ICTTR_43179 are exactly identical! WARNING: Sequences sp_O88609_LMX1B_MOUSE_10090 and tr_A0A2R8PA11_A0A2R8PA11_CALJA_9483 are exactly identical! WARNING: Sequences sp_O88609_LMX1B_MOUSE_10090 and tr_A0A286ZUN2_A0A286ZUN2_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YG74_M3YG74_MUSPF_9669 and tr_A0A2I2Z1J5_A0A2I2Z1J5_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YG74_M3YG74_MUSPF_9669 and tr_E2R2S5_E2R2S5_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YG74_M3YG74_MUSPF_9669 and tr_A0A2I3SPX4_A0A2I3SPX4_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YG74_M3YG74_MUSPF_9669 and sp_Q9NQ69_LHX9_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YG74_M3YG74_MUSPF_9669 and tr_A0A1D5QN93_A0A1D5QN93_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YG74_M3YG74_MUSPF_9669 and tr_G7NWH8_G7NWH8_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YG74_M3YG74_MUSPF_9669 and tr_A0A2I3LDS6_A0A2I3LDS6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YG74_M3YG74_MUSPF_9669 and tr_A0A2K5LNZ1_A0A2K5LNZ1_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YG74_M3YG74_MUSPF_9669 and tr_A0A2K6E6I1_A0A2K6E6I1_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YG74_M3YG74_MUSPF_9669 and tr_A0A2K6A320_A0A2K6A320_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YG74_M3YG74_MUSPF_9669 and tr_A0A2R8Z7U1_A0A2R8Z7U1_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YG74_M3YG74_MUSPF_9669 and tr_A0A2U3X0L6_A0A2U3X0L6_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YG74_M3YG74_MUSPF_9669 and tr_A0A2U3Z017_A0A2U3Z017_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YG74_M3YG74_MUSPF_9669 and tr_A0A2Y9JU98_A0A2Y9JU98_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YRH7_M3YRH7_MUSPF_9669 and tr_E2RPC3_E2RPC3_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YRH7_M3YRH7_MUSPF_9669 and tr_M3W6P1_M3W6P1_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YRH7_M3YRH7_MUSPF_9669 and tr_A0A1S3FL91_A0A1S3FL91_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3YRH7_M3YRH7_MUSPF_9669 and tr_A0A2Y9J983_A0A2Y9J983_ENHLU_391180 are exactly identical! WARNING: Sequences tr_Q9V472_Q9V472_DROME_7227 and tr_A0A1W4UQM5_A0A1W4UQM5_DROFC_30025 are exactly identical! WARNING: Sequences tr_A0A2I3GL84_A0A2I3GL84_NOMLE_61853 and tr_G3SJ98_G3SJ98_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GL84_A0A2I3GL84_NOMLE_61853 and tr_A0A2I3S5M9_A0A2I3S5M9_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GL84_A0A2I3GL84_NOMLE_61853 and tr_A0A2R9BAU6_A0A2R9BAU6_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QZH4_G3QZH4_GORGO_9595 and tr_H2PTC4_H2PTC4_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QZH4_G3QZH4_GORGO_9595 and tr_H2QXV2_H2QXV2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QZH4_G3QZH4_GORGO_9595 and tr_I3LXC7_I3LXC7_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G3QZH4_G3QZH4_GORGO_9595 and tr_H0W233_H0W233_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G3QZH4_G3QZH4_GORGO_9595 and sp_P50458_LHX2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QZH4_G3QZH4_GORGO_9595 and tr_U3C3V9_U3C3V9_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3QZH4_G3QZH4_GORGO_9595 and tr_C4TJC6_C4TJC6_PIG_9823 are exactly identical! WARNING: Sequences tr_G3QZH4_G3QZH4_GORGO_9595 and tr_A0A2R9AZ03_A0A2R9AZ03_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QZH4_G3QZH4_GORGO_9595 and tr_A0A2Y9NXS8_A0A2Y9NXS8_DELLE_9749 are exactly identical! WARNING: Sequences tr_G3QZH4_G3QZH4_GORGO_9595 and tr_A0A2Y9SU80_A0A2Y9SU80_PHYCD_9755 are exactly identical! WARNING: Sequences tr_H2N4A3_H2N4A3_PONAB_9601 and tr_A0A1U8BVL0_A0A1U8BVL0_MESAU_10036 are exactly identical! WARNING: Sequences tr_H2N712_H2N712_PONAB_9601 and sp_Q68G74_LHX8_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PTF0_H2PTF0_PONAB_9601 and tr_G3TF87_G3TF87_LOXAF_9785 are exactly identical! WARNING: Sequences tr_H2QXW6_H2QXW6_PANTR_9598 and tr_H0WI04_H0WI04_OTOGA_30611 are exactly identical! WARNING: Sequences tr_H2QXW6_H2QXW6_PANTR_9598 and sp_O60663_LMX1B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QXW6_H2QXW6_PANTR_9598 and tr_D2H3X4_D2H3X4_AILME_9646 are exactly identical! WARNING: Sequences tr_H2QXW6_H2QXW6_PANTR_9598 and tr_A0A2I2V362_A0A2I2V362_FELCA_9685 are exactly identical! WARNING: Sequences tr_H2QXW6_H2QXW6_PANTR_9598 and tr_A0A0D9RMI6_A0A0D9RMI6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2QXW6_H2QXW6_PANTR_9598 and tr_A0A2K6C4K9_A0A2K6C4K9_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2QXW6_H2QXW6_PANTR_9598 and tr_A0A2Y9NL89_A0A2Y9NL89_DELLE_9749 are exactly identical! WARNING: Sequences tr_H2QXW6_H2QXW6_PANTR_9598 and tr_A0A2Y9T224_A0A2Y9T224_PHYCD_9755 are exactly identical! WARNING: Sequences tr_H2QXW6_H2QXW6_PANTR_9598 and tr_A0A384B518_A0A384B518_BALAS_310752 are exactly identical! WARNING: Sequences tr_H0WMW9_H0WMW9_OTOGA_30611 and tr_F6TBF3_F6TBF3_MACMU_9544 are exactly identical! WARNING: Sequences tr_H0WMW9_H0WMW9_OTOGA_30611 and tr_A0A096P0M4_A0A096P0M4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H0WMW9_H0WMW9_OTOGA_30611 and tr_A0A0D9RM45_A0A0D9RM45_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H0WMW9_H0WMW9_OTOGA_30611 and tr_A0A2K5KYM0_A0A2K5KYM0_CERAT_9531 are exactly identical! WARNING: Sequences tr_H0WMW9_H0WMW9_OTOGA_30611 and tr_A0A2K6D2V7_A0A2K6D2V7_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6RGC8_F6RGC8_MACMU_9544 and tr_A0A2K6DP22_A0A2K6DP22_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6VZX1_F6VZX1_MACMU_9544 and tr_A0A2R9C8I8_A0A2R9C8I8_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6VZX1_F6VZX1_MACMU_9544 and tr_A0A2U3VDE4_A0A2U3VDE4_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1L9U3_G1L9U3_AILME_9646 and tr_A0A384C241_A0A384C241_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I3LDJ2_A0A2I3LDJ2_PAPAN_9555 and tr_A0A2K5MVV3_A0A2K5MVV3_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3LDJ2_A0A2I3LDJ2_PAPAN_9555 and tr_A0A2K6AYA2_A0A2K6AYA2_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3LDJ2_A0A2I3LDJ2_PAPAN_9555 and tr_A0A2K5YN24_A0A2K5YN24_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A091UU84_A0A091UU84_NIPNI_128390 and tr_A0A087RDS5_A0A087RDS5_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091UU84_A0A091UU84_NIPNI_128390 and tr_A0A093KAU4_A0A093KAU4_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091UU84_A0A091UU84_NIPNI_128390 and tr_A0A091WNC9_A0A091WNC9_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091UU84_A0A091UU84_NIPNI_128390 and tr_A0A0A0AEQ5_A0A0A0AEQ5_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1I7THM1_A0A1I7THM1_9PELO_1561998 and tr_A0A1I7THM2_A0A1I7THM2_9PELO_1561998 are exactly identical! WARNING: Sequences tr_A0A2D0RSN9_A0A2D0RSN9_ICTPU_7998 and tr_A0A2D0RSP3_A0A2D0RSP3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4A1B0_A0A2U4A1B0_TURTR_9739 and tr_A0A2Y9NUF7_A0A2Y9NUF7_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4A1B0_A0A2U4A1B0_TURTR_9739 and tr_A0A2Y9F546_A0A2Y9F546_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4A1B0_A0A2U4A1B0_TURTR_9739 and tr_A0A384A6X9_A0A384A6X9_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4A4I7_A0A2U4A4I7_TURTR_9739 and tr_A0A2Y9NUI6_A0A2Y9NUI6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2Y9NTG7_A0A2Y9NTG7_DELLE_9749 and tr_A0A2Y9SU71_A0A2Y9SU71_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 77 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C0A1/4_raxmlng_ancestral/Q9C0A1.raxml.reduced.phy Alignment comprises 1 partitions and 2572 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 2572 Gaps: 66.65 % Invariant sites: 0.12 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C0A1/4_raxmlng_ancestral/Q9C0A1.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C0A1/3_mltree/Q9C0A1.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 643 / 51440 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -933288.823069 [00:00:00 -933288.823069] Initial branch length optimization [00:00:07 -461918.190678] Model parameter optimization (eps = 0.100000) [00:04:36] Tree #1, final logLikelihood: -459524.731175 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.178148,0.316170) (0.183321,0.960009) (0.310296,0.590762) (0.328235,1.780351) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C0A1/4_raxmlng_ancestral/Q9C0A1.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C0A1/4_raxmlng_ancestral/Q9C0A1.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C0A1/4_raxmlng_ancestral/Q9C0A1.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C0A1/4_raxmlng_ancestral/Q9C0A1.raxml.log Analysis started: 12-Jul-2021 18:00:57 / finished: 12-Jul-2021 18:05:54 Elapsed time: 297.517 seconds Consumed energy: 15.764 Wh