RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 30-Jun-2021 19:50:40 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C009/2_msa/Q9C009_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C009/3_mltree/Q9C009 --seed 2 --threads 2 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C009/2_msa/Q9C009_trimmed_msa.fasta [00:00:00] Loaded alignment with 1000 taxa and 82 sites WARNING: Sequences tr_B4QI21_B4QI21_DROSI_7240 and sp_Q02361_FD3_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QI21_B4QI21_DROSI_7240 and tr_B4J764_B4J764_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4QI21_B4QI21_DROSI_7240 and tr_B4I8C7_B4I8C7_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QI21_B4QI21_DROSI_7240 and tr_Q28X48_Q28X48_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4QI21_B4QI21_DROSI_7240 and tr_B4MJL9_B4MJL9_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4QI21_B4QI21_DROSI_7240 and tr_B3MEK5_B3MEK5_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4QI21_B4QI21_DROSI_7240 and tr_B4H512_B4H512_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4QI21_B4QI21_DROSI_7240 and tr_B4LMW5_B4LMW5_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4QI21_B4QI21_DROSI_7240 and tr_B4KSL2_B4KSL2_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4QI21_B4QI21_DROSI_7240 and tr_A0A0M3QV20_A0A0M3QV20_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4QI21_B4QI21_DROSI_7240 and tr_A0A1W4VQ21_A0A1W4VQ21_DROFC_30025 are exactly identical! WARNING: Sequences tr_E9FVM8_E9FVM8_DAPPU_6669 and tr_A0A0P5DPY4_A0A0P5DPY4_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E9HAB5_E9HAB5_DAPPU_6669 and tr_A0A162DAI5_A0A162DAI5_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E1ZWP5_E1ZWP5_CAMFO_104421 and tr_A0A158ND79_A0A158ND79_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E1ZWP5_E1ZWP5_CAMFO_104421 and tr_F4X777_F4X777_ACREC_103372 are exactly identical! WARNING: Sequences tr_E1ZWP5_E1ZWP5_CAMFO_104421 and tr_A0A151WG73_A0A151WG73_9HYME_64791 are exactly identical! WARNING: Sequences tr_E1ZWP5_E1ZWP5_CAMFO_104421 and tr_A0A195DJA6_A0A195DJA6_9HYME_471704 are exactly identical! WARNING: Sequences tr_E1ZWP5_E1ZWP5_CAMFO_104421 and tr_A0A195B0R2_A0A195B0R2_9HYME_520822 are exactly identical! WARNING: Sequences tr_E1ZWP5_E1ZWP5_CAMFO_104421 and tr_A0A195FGU5_A0A195FGU5_9HYME_34720 are exactly identical! WARNING: Sequences tr_E1ZWP5_E1ZWP5_CAMFO_104421 and tr_A0A151I8T2_A0A151I8T2_9HYME_456900 are exactly identical! WARNING: Sequences tr_E2A9T7_E2A9T7_CAMFO_104421 and tr_A0A026WRG2_A0A026WRG2_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_A0A2R8QK25_A0A2R8QK25_DANRE_7955 and tr_H2MUP6_H2MUP6_ORYLA_8090 are exactly identical! WARNING: Sequences tr_A0A2R8QK25_A0A2R8QK25_DANRE_7955 and tr_A0A3B5QF00_A0A3B5QF00_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A2R8QK25_A0A2R8QK25_DANRE_7955 and tr_I3K356_I3K356_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A2R8QK25_A0A2R8QK25_DANRE_7955 and tr_H2S6X8_H2S6X8_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A0A2R8QK25_A0A2R8QK25_DANRE_7955 and tr_A0A087XAF5_A0A087XAF5_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A2R8QK25_A0A2R8QK25_DANRE_7955 and tr_A0A1S3LSJ1_A0A1S3LSJ1_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A2R8QK25_A0A2R8QK25_DANRE_7955 and tr_A0A2D0QK46_A0A2D0QK46_ICTPU_7998 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_H2M0F1_H2M0F1_ORYLA_8090 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_H2NRP8_H2NRP8_PONAB_9601 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_E2QUB0_E2QUB0_CANLF_9615 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_H2QBN8_H2QBN8_PANTR_9598 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_F7C1B9_F7C1B9_ORNAN_9258 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_F7CL86_F7CL86_HORSE_9796 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_M3ZLJ0_M3ZLJ0_XIPMA_8083 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_I3JE06_I3JE06_ORENI_8128 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_H0X5S1_H0X5S1_OTOGA_30611 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and sp_Q12946_FOXF1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_Q4SIK5_Q4SIK5_TETNG_99883 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_G3PTX0_G3PTX0_GASAC_69293 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_G3SPP6_G3SPP6_LOXAF_9785 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_G3WI70_G3WI70_SARHA_9305 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and sp_Q28BS5_FOXF1_XENTR_8364 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A2R8N5W2_A0A2R8N5W2_CALJA_9483 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A287ADW4_A0A287ADW4_PIG_9823 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_H3B2M4_H3B2M4_LATCH_7897 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_G1MIW9_G1MIW9_AILME_9646 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_F1MBH4_F1MBH4_BOVIN_9913 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_L5JQT6_L5JQT6_PTEAL_9402 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_M3WST6_M3WST6_FELCA_9685 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_W5K7H2_W5K7H2_ASTMX_7994 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_W5LYG4_W5LYG4_LEPOC_7918 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A087YI84_A0A087YI84_POEFO_48698 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A096MYS8_A0A096MYS8_PAPAN_9555 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A0D9S211_A0A0D9S211_CHLSB_60711 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A0P7YSB6_A0A0P7YSB6_9TELE_113540 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A1S3A9M8_A0A1S3A9M8_ERIEU_9365 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A1S3KUZ7_A0A1S3KUZ7_SALSA_8030 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A1S3PU35_A0A1S3PU35_SALSA_8030 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A1L8GEV3_A0A1L8GEV3_XENLA_8355 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_B7ZPR5_B7ZPR5_XENLA_8355 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A2I4D826_A0A2I4D826_9TELE_52670 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A060WQE4_A0A060WQE4_ONCMY_8022 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A060XXW5_A0A060XXW5_ONCMY_8022 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A2D0QW51_A0A2D0QW51_ICTPU_7998 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A2K5LXJ0_A0A2K5LXJ0_CERAT_9531 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A2K6C7H7_A0A2K6C7H7_MACNE_9545 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A2U3VC88_A0A2U3VC88_ODORO_9708 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A2U3YL06_A0A2U3YL06_LEPWE_9713 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A2U9BCN1_A0A2U9BCN1_SCOMX_52904 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A2Y9DNJ7_A0A2Y9DNJ7_TRIMA_127582 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A2Y9K273_A0A2Y9K273_ENHLU_391180 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A2Y9NXD1_A0A2Y9NXD1_DELLE_9749 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A2Y9SW28_A0A2Y9SW28_PHYCD_9755 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A384D1S2_A0A384D1S2_URSMA_29073 are exactly identical! WARNING: Sequences sp_A1L1S5_FOXF1_DANRE_7955 and tr_A0A383ZBV1_A0A383ZBV1_BALAS_310752 are exactly identical! WARNING: Sequences tr_B3DGC2_B3DGC2_DANRE_7955 and tr_A0A1S3SVZ6_A0A1S3SVZ6_SALSA_8030 are exactly identical! WARNING: Sequences tr_B3DGC2_B3DGC2_DANRE_7955 and tr_A0A060Z344_A0A060Z344_ONCMY_8022 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_C1K2Z2_C1K2Z2_ORYLA_8090 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_G3RCC1_G3RCC1_GORGO_9595 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_M3ZVH4_M3ZVH4_XIPMA_8083 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_I3JGT6_I3JGT6_ORENI_8128 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_I3JTB1_I3JTB1_ORENI_8128 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_H2T0M4_H2T0M4_TAKRU_31033 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_H3CS20_H3CS20_TETNG_99883 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_G3NMQ5_G3NMQ5_GASAC_69293 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_F7DZ08_F7DZ08_XENTR_8364 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_H2ZX89_H2ZX89_LATCH_7897 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_W5L5R9_W5L5R9_ASTMX_7994 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_W5N5T3_W5N5T3_LEPOC_7918 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_A0A087X3T7_A0A087X3T7_POEFO_48698 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_A0A0P7XA93_A0A0P7XA93_9TELE_113540 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_A0A1S3KJF0_A0A1S3KJF0_SALSA_8030 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_A0A1L8FS94_A0A1L8FS94_XENLA_8355 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_A0A1L8FXQ3_A0A1L8FXQ3_XENLA_8355 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_A0A2I4CWI4_A0A2I4CWI4_9TELE_52670 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_A0A060XW47_A0A060XW47_ONCMY_8022 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_A0A2D0R7K9_A0A2D0R7K9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_F1QHL6_F1QHL6_DANRE_7955 and tr_A0A2U9C380_A0A2U9C380_SCOMX_52904 are exactly identical! WARNING: Sequences tr_F1R5S7_F1R5S7_DANRE_7955 and sp_P79772_FOXD3_CHICK_9031 are exactly identical! WARNING: Sequences tr_F1R5S7_F1R5S7_DANRE_7955 and sp_Q61060_FOXD3_MOUSE_10090 are exactly identical! WARNING: Sequences tr_F1R5S7_F1R5S7_DANRE_7955 and tr_G3RWF9_G3RWF9_GORGO_9595 are exactly identical! WARNING: Sequences tr_F1R5S7_F1R5S7_DANRE_7955 and tr_W5PIR5_W5PIR5_SHEEP_9940 are exactly identical! WARNING: Sequences tr_F1R5S7_F1R5S7_DANRE_7955 and tr_A0A3B5Q4W1_A0A3B5Q4W1_XIPMA_8083 are exactly identical! WARNING: Sequences tr_F1R5S7_F1R5S7_DANRE_7955 and sp_Q5M7L9_FOXD3_XENTR_8364 are exactly identical! WARNING: Sequences tr_F1R5S7_F1R5S7_DANRE_7955 and tr_H3B6R0_H3B6R0_LATCH_7897 are exactly identical! WARNING: Sequences tr_F1R5S7_F1R5S7_DANRE_7955 and tr_W5LRV3_W5LRV3_ASTMX_7994 are exactly identical! WARNING: Sequences tr_F1R5S7_F1R5S7_DANRE_7955 and tr_W5NMI5_W5NMI5_LEPOC_7918 are exactly identical! WARNING: Sequences tr_F1R5S7_F1R5S7_DANRE_7955 and tr_A0A087YQX3_A0A087YQX3_POEFO_48698 are exactly identical! WARNING: Sequences tr_F1R5S7_F1R5S7_DANRE_7955 and tr_A0A0Q3U4E4_A0A0Q3U4E4_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1R5S7_F1R5S7_DANRE_7955 and tr_A0A1U7QW53_A0A1U7QW53_MESAU_10036 are exactly identical! WARNING: Sequences tr_F1R5S7_F1R5S7_DANRE_7955 and tr_A0A2I4BPU0_A0A2I4BPU0_9TELE_52670 are exactly identical! WARNING: Sequences tr_F1R5S7_F1R5S7_DANRE_7955 and tr_A0A226NGM1_A0A226NGM1_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1R5S7_F1R5S7_DANRE_7955 and tr_A0A226PQ42_A0A226PQ42_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1R5S7_F1R5S7_DANRE_7955 and tr_A0A2D0RXJ4_A0A2D0RXJ4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_F1R5S7_F1R5S7_DANRE_7955 and tr_A0A2U3YDU8_A0A2U3YDU8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_Q6DG75_Q6DG75_DANRE_7955 and tr_I3KG76_I3KG76_ORENI_8128 are exactly identical! WARNING: Sequences tr_Q6DG75_Q6DG75_DANRE_7955 and tr_H2SVM8_H2SVM8_TAKRU_31033 are exactly identical! WARNING: Sequences tr_Q6DG75_Q6DG75_DANRE_7955 and tr_H3CYE4_H3CYE4_TETNG_99883 are exactly identical! WARNING: Sequences tr_Q6DG75_Q6DG75_DANRE_7955 and tr_A0A2I4B3V1_A0A2I4B3V1_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A1D5NU34_A0A1D5NU34_CHICK_9031 and tr_G1KGL5_G1KGL5_ANOCA_28377 are exactly identical! WARNING: Sequences tr_A0A1D5NU34_A0A1D5NU34_CHICK_9031 and tr_H0ZKS9_H0ZKS9_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5NU34_A0A1D5NU34_CHICK_9031 and tr_U3K6H9_U3K6H9_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5NU34_A0A1D5NU34_CHICK_9031 and tr_A0A218V9L6_A0A218V9L6_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5NU34_A0A1D5NU34_CHICK_9031 and tr_A0A226MVA8_A0A226MVA8_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5NU34_A0A1D5NU34_CHICK_9031 and tr_A0A226PGX1_A0A226PGX1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5P6I4_A0A1D5P6I4_CHICK_9031 and tr_U3JVY6_U3JVY6_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5P6I4_A0A1D5P6I4_CHICK_9031 and tr_U3ITK5_U3ITK5_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5P6I4_A0A1D5P6I4_CHICK_9031 and tr_A0A0P7V572_A0A0P7V572_9TELE_113540 are exactly identical! WARNING: Sequences tr_A0A1D5P6I4_A0A1D5P6I4_CHICK_9031 and tr_A0A0Q3MA42_A0A0Q3MA42_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A1D5P6I4_A0A1D5P6I4_CHICK_9031 and tr_A0A091F333_A0A091F333_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A1D5P6I4_A0A1D5P6I4_CHICK_9031 and tr_A0A093QCC5_A0A093QCC5_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A1D5P6I4_A0A1D5P6I4_CHICK_9031 and tr_A0A091W1A1_A0A091W1A1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5P6I4_A0A1D5P6I4_CHICK_9031 and tr_A0A0A0A7D8_A0A0A0A7D8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5P6I4_A0A1D5P6I4_CHICK_9031 and tr_A0A093GM95_A0A093GM95_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5P6I4_A0A1D5P6I4_CHICK_9031 and tr_A0A091J4D8_A0A091J4D8_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5P6I4_A0A1D5P6I4_CHICK_9031 and tr_A0A1U7RZ72_A0A1U7RZ72_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A1D5P6I4_A0A1D5P6I4_CHICK_9031 and tr_A0A218UHK9_A0A218UHK9_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5P6I4_A0A1D5P6I4_CHICK_9031 and tr_A0A226MS89_A0A226MS89_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5P6I4_A0A1D5P6I4_CHICK_9031 and tr_A0A226PFG2_A0A226PFG2_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and sp_P35582_FOXA1_MOUSE_10090 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_M3YXU1_M3YXU1_MUSPF_9669 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_G1QAI6_G1QAI6_MYOLU_59463 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_G3I810_G3I810_CRIGR_10029 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_H2NL26_H2NL26_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_F6UTY3_F6UTY3_CANLF_9615 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A2I3RDC3_A0A2I3RDC3_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_I3MSK1_I3MSK1_ICTTR_43179 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_H0Y185_H0Y185_OTOGA_30611 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and sp_P55317_FOXA1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_F6YQ64_F6YQ64_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_G5B3L3_G5B3L3_HETGA_10181 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_G3UEM2_G3UEM2_LOXAF_9785 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_G3VF35_G3VF35_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A2R8PCF1_A0A2R8PCF1_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A287AEQ3_A0A287AEQ3_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_G1LMZ9_G1LMZ9_AILME_9646 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_F1MNS7_F1MNS7_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_M3X2E5_M3X2E5_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A096NUN4_A0A096NUN4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A091DCC4_A0A091DCC4_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A0D9RSE6_A0A0D9RSE6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A0Q3MLX6_A0A0Q3MLX6_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A093PZQ0_A0A093PZQ0_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A091W007_A0A091W007_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A093HII6_A0A093HII6_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A091VBJ0_A0A091VBJ0_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A099Z2W0_A0A099Z2W0_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A0A0APC4_A0A0A0APC4_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A093IMX0_A0A093IMX0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A1S3W9M7_A0A1S3W9M7_ERIEU_9365 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A1S3ETI5_A0A1S3ETI5_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A1L8FAN2_A0A1L8FAN2_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A1U7QWH5_A0A1U7QWH5_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A1V4KH94_A0A1V4KH94_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A226NHD2_A0A226NHD2_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A226PX10_A0A226PX10_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A2K5N716_A0A2K5N716_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A2K6CVT5_A0A2K6CVT5_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A2U3V8N5_A0A2U3V8N5_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A2U3VWQ0_A0A2U3VWQ0_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A2U3XEU1_A0A2U3XEU1_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A2Y9DLS5_A0A2Y9DLS5_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A2Y9IIS0_A0A2Y9IIS0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A2Y9N4R7_A0A2Y9N4R7_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A2Y9SCQ3_A0A2Y9SCQ3_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A1D5PCB1_A0A1D5PCB1_CHICK_9031 and tr_A0A383ZTB3_A0A383ZTB3_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A1D5PD26_A0A1D5PD26_CHICK_9031 and tr_F7G9V2_F7G9V2_ORNAN_9258 are exactly identical! WARNING: Sequences tr_A0A1D5PD26_A0A1D5PD26_CHICK_9031 and tr_A0A091EXK8_A0A091EXK8_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A1D5PD26_A0A1D5PD26_CHICK_9031 and tr_A0A093QC01_A0A093QC01_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A1D5PD26_A0A1D5PD26_CHICK_9031 and tr_A0A091FLN2_A0A091FLN2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A1D5PD26_A0A1D5PD26_CHICK_9031 and tr_A0A2I0MX94_A0A2I0MX94_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PD26_A0A1D5PD26_CHICK_9031 and tr_A0A093GSU3_A0A093GSU3_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5PD26_A0A1D5PD26_CHICK_9031 and tr_A0A218UQA9_A0A218UQA9_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5PD26_A0A1D5PD26_CHICK_9031 and tr_A0A226MYY5_A0A226MYY5_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PD26_A0A1D5PD26_CHICK_9031 and tr_A0A226PX54_A0A226PX54_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5PS96_A0A1D5PS96_CHICK_9031 and tr_H0Z143_H0Z143_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5PS96_A0A1D5PS96_CHICK_9031 and tr_U3KIP1_U3KIP1_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5PS96_A0A1D5PS96_CHICK_9031 and tr_R0LP48_R0LP48_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PS96_A0A1D5PS96_CHICK_9031 and tr_A0A091VUR1_A0A091VUR1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5PS96_A0A1D5PS96_CHICK_9031 and tr_A0A2I0M0G1_A0A2I0M0G1_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PS96_A0A1D5PS96_CHICK_9031 and tr_A0A226MS78_A0A226MS78_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PS96_A0A1D5PS96_CHICK_9031 and tr_A0A226PFX9_A0A226PFX9_COLVI_9014 are exactly identical! WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_G1MT33_G1MT33_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_K7FR90_K7FR90_PELSI_13735 are exactly identical! WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_R0JJL7_R0JJL7_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_A0A151NRB6_A0A151NRB6_ALLMI_8496 are exactly identical! WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_A0A0Q3MQA2_A0A0Q3MQA2_AMAAE_12930 are exactly identical! WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_A0A091IK37_A0A091IK37_EGRGA_188379 are exactly identical! WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_A0A091VHA2_A0A091VHA2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_A0A087REH7_A0A087REH7_APTFO_9233 are exactly identical! WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_A0A093H7J9_A0A093H7J9_STRCA_441894 are exactly identical! WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_A0A091WEI1_A0A091WEI1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_A0A099Z6V4_A0A099Z6V4_TINGU_94827 are exactly identical! WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_A0A0A0A5B6_A0A0A0A5B6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_A0A2I0MA01_A0A2I0MA01_COLLI_8932 are exactly identical! WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_A0A093GHH4_A0A093GHH4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_A0A091IYN4_A0A091IYN4_CALAN_9244 are exactly identical! WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_A0A1U7S4B7_A0A1U7S4B7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_A0A1V4KV23_A0A1V4KV23_PATFA_372326 are exactly identical! WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_A0A226N0Z6_A0A226N0Z6_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_A0A226PCF2_A0A226PCF2_COLVI_9014 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and sp_Q61080_FOXF1_MOUSE_10090 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_M3XMU0_M3XMU0_MUSPF_9669 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_G1QDG2_G1QDG2_MYOLU_59463 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_G1TU67_G1TU67_RABIT_9986 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_F1PW06_F1PW06_CANLF_9615 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_H2R7P3_H2R7P3_PANTR_9598 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_F7FGY5_F7FGY5_MONDO_13616 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_M0R8R8_M0R8R8_RAT_10116 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_I3NEP1_I3NEP1_ICTTR_43179 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_H0WT69_H0WT69_OTOGA_30611 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_H0UV38_H0UV38_CAVPO_10141 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and sp_Q12947_FOXF2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_F6SBZ9_F6SBZ9_MACMU_9544 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_K7FAJ0_K7FAJ0_PELSI_13735 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_G3SPS1_G3SPS1_LOXAF_9785 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_G3WHK3_G3WHK3_SARHA_9305 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_A0A2R8MXP5_A0A2R8MXP5_CALJA_9483 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_M3W4X8_M3W4X8_FELCA_9685 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_A0A091EEG7_A0A091EEG7_FUKDA_885580 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_A0A0D9R4B6_A0A0D9R4B6_CHLSB_60711 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_A0A1S3F7T8_A0A1S3F7T8_DIPOR_10020 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_A0A1U7T5G2_A0A1U7T5G2_TARSY_1868482 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_A0A1U7Q8U0_A0A1U7Q8U0_MESAU_10036 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_A0A1U8BR51_A0A1U8BR51_MESAU_10036 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_A0A2K5KK85_A0A2K5KK85_CERAT_9531 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_A0A2K6AXU5_A0A2K6AXU5_MACNE_9545 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_A0A2U3WI86_A0A2U3WI86_ODORO_9708 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_A0A2Y9G0X2_A0A2Y9G0X2_TRIMA_127582 are exactly identical! WARNING: Sequences sp_O54743_FOXF2_MOUSE_10090 and tr_A0A2Y9KJU0_A0A2Y9KJU0_ENHLU_391180 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_M3Z5I4_M3Z5I4_MUSPF_9669 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_H2R7P4_H2R7P4_PANTR_9598 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_F7FGN1_F7FGN1_MONDO_13616 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and sp_Q63244_FOXQ1_RAT_10116 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_A0A287D989_A0A287D989_ICTTR_43179 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and sp_Q9C009_FOXQ1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_G3WGA0_G3WGA0_SARHA_9305 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_A0A2R8MN96_A0A2R8MN96_CALJA_9483 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_F1RXP2_F1RXP2_PIG_9823 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_A0A2I2UDM3_A0A2I2UDM3_FELCA_9685 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_A0A0D9SCN4_A0A0D9SCN4_CHLSB_60711 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_A0A1S3WLR1_A0A1S3WLR1_ERIEU_9365 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_A0A1S3F654_A0A1S3F654_DIPOR_10020 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_A0A3Q0DUV4_A0A3Q0DUV4_TARSY_1868482 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_A0A1U7Q8W8_A0A1U7Q8W8_MESAU_10036 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_A0A2K5KXN4_A0A2K5KXN4_CERAT_9531 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_A0A2U4C547_A0A2U4C547_TURTR_9739 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_A0A2U3WI63_A0A2U3WI63_ODORO_9708 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_A0A2U3XQJ4_A0A2U3XQJ4_LEPWE_9713 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_A0A2Y9KK41_A0A2Y9KK41_ENHLU_391180 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_A0A2Y9PG68_A0A2Y9PG68_DELLE_9749 are exactly identical! WARNING: Sequences sp_O70220_FOXQ1_MOUSE_10090 and tr_A0A2Y9SGX0_A0A2Y9SGX0_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_M3XQ05_M3XQ05_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A2I3HDK9_A0A2I3HDK9_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_G3HXU7_G3HXU7_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_G3RYD0_G3RYD0_GORGO_9595 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_G1SSW6_G1SSW6_RABIT_9986 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A2I3TMI6_A0A2I3TMI6_PANTR_9598 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_F7BV98_F7BV98_ORNAN_9258 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_W5P4T4_W5P4T4_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_I3N796_I3N796_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_H0XK51_H0XK51_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A286XLV7_A0A286XLV7_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and sp_Q9Y261_FOXA2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_F7D2T8_F7D2T8_MACMU_9544 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_F7HZ20_F7HZ20_CALJA_9483 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A286ZU79_A0A286ZU79_PIG_9823 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_G1MBD9_G1MBD9_AILME_9646 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_F1MZB6_F1MZB6_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_L5JZK9_L5JZK9_PTEAL_9402 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_M3WGT1_M3WGT1_FELCA_9685 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A096MMP8_A0A096MMP8_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A091CUX5_A0A091CUX5_FUKDA_885580 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A0D9RF89_A0A0D9RF89_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A091UQX0_A0A091UQX0_NIPNI_128390 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A093HCE0_A0A093HCE0_STRCA_441894 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A091J186_A0A091J186_CALAN_9244 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A1S2ZW73_A0A1S2ZW73_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A1S3G387_A0A1S3G387_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A1U7T1S5_A0A1U7T1S5_TARSY_1868482 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A1U7QF58_A0A1U7QF58_MESAU_10036 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A2K5M2A1_A0A2K5M2A1_CERAT_9531 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A2K6ATQ4_A0A2K6ATQ4_MACNE_9545 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A2K5YA79_A0A2K5YA79_MANLE_9568 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A2U4AQS4_A0A2U4AQS4_TURTR_9739 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A2U3WZN7_A0A2U3WZN7_ODORO_9708 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A2U3YBS9_A0A2U3YBS9_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A2Y9DKZ8_A0A2Y9DKZ8_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A2Y9IWQ4_A0A2Y9IWQ4_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A2Y9PSS8_A0A2Y9PSS8_DELLE_9749 are exactly identical! WARNING: Sequences sp_P35583_FOXA2_MOUSE_10090 and tr_A0A2Y9SL73_A0A2Y9SL73_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_M3Y2A9_M3Y2A9_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_G1QPL9_G1QPL9_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_G3QMZ7_G3QMZ7_GORGO_9595 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_H2P0P2_H2P0P2_PONAB_9601 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_G1SFI3_G1SFI3_RABIT_9986 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_E2RNB4_E2RNB4_CANLF_9615 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_H2QGM2_H2QGM2_PANTR_9598 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_F7AAP3_F7AAP3_HORSE_9796 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and sp_P32183_FOXA3_RAT_10116 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_I3MXH6_I3MXH6_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_H0Y103_H0Y103_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_H0VZG0_H0VZG0_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and sp_P55318_FOXA3_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_F6Q3J5_F6Q3J5_MACMU_9544 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_G5AUY3_G5AUY3_HETGA_10181 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_G3UFG9_G3UFG9_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_F7A9Z0_F7A9Z0_CALJA_9483 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_F1RM41_F1RM41_PIG_9823 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_G1L1F2_G1L1F2_AILME_9646 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and sp_Q3Y598_FOXA3_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_L5KM86_L5KM86_PTEAL_9402 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_M3WRS4_M3WRS4_FELCA_9685 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_A0A2I3NEP0_A0A2I3NEP0_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_A0A091D7Y7_A0A091D7Y7_FUKDA_885580 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_A0A0D9S242_A0A0D9S242_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_A0A1S3ABD1_A0A1S3ABD1_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_A0A1U7SRR9_A0A1U7SRR9_TARSY_1868482 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_A0A1U7QUJ4_A0A1U7QUJ4_MESAU_10036 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_A0A2K5NDQ3_A0A2K5NDQ3_CERAT_9531 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_A0A2K6DF64_A0A2K6DF64_MACNE_9545 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_A0A2K5Z9S7_A0A2K5Z9S7_MANLE_9568 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_A0A2R9CGK8_A0A2R9CGK8_PANPA_9597 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_A0A2U3VZJ0_A0A2U3VZJ0_ODORO_9708 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_A0A2U3Z3T1_A0A2U3Z3T1_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_A0A2Y9DUQ7_A0A2Y9DUQ7_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_A0A2Y9L3I7_A0A2Y9L3I7_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_A0A2Y9PCM5_A0A2Y9PCM5_DELLE_9749 are exactly identical! WARNING: Sequences sp_P35584_FOXA3_MOUSE_10090 and tr_A0A383YZB5_A0A383YZB5_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q61574_FOXS1_MOUSE_10090 and tr_G1Q0G1_G1Q0G1_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q61574_FOXS1_MOUSE_10090 and tr_G3RMG2_G3RMG2_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q61574_FOXS1_MOUSE_10090 and tr_H2P1K6_H2P1K6_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q61574_FOXS1_MOUSE_10090 and tr_H2QK56_H2QK56_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q61574_FOXS1_MOUSE_10090 and tr_Q5HZE9_Q5HZE9_RAT_10116 are exactly identical! WARNING: Sequences sp_Q61574_FOXS1_MOUSE_10090 and tr_A0A2R9ARS5_A0A2R9ARS5_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q64731_FOXL1_MOUSE_10090 and tr_E2QSH5_E2QSH5_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q64731_FOXL1_MOUSE_10090 and tr_M0R6E1_M0R6E1_RAT_10116 are exactly identical! WARNING: Sequences sp_Q64731_FOXL1_MOUSE_10090 and tr_A0A1U7QRJ2_A0A1U7QRJ2_MESAU_10036 are exactly identical! WARNING: Sequences tr_W5J625_W5J625_ANODA_43151 and tr_Q7Q6E2_Q7Q6E2_ANOGA_7165 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_G1QRU0_G1QRU0_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_G3QG51_G3QG51_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and sp_B5RHS5_FOXI3_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_J9P6N9_J9P6N9_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_A0A2I3THB7_A0A2I3THB7_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_W5QHW7_W5QHW7_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_I3MUY3_I3MUY3_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and sp_A8MTJ6_FOXI3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_F7C442_F7C442_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_G3TM21_G3TM21_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_F7FYZ8_F7FYZ8_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_A0A287AD54_A0A287AD54_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_G1LU39_G1LU39_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_F1MC99_F1MC99_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_A0A2I2UQ47_A0A2I2UQ47_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_A0A2I3M068_A0A2I3M068_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_A0A0D9RV20_A0A0D9RV20_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_A0A1S3AF37_A0A1S3AF37_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_A0A2K5LFZ4_A0A2K5LFZ4_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_A0A2K6BLH4_A0A2K6BLH4_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_A0A2K5XWR8_A0A2K5XWR8_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_A0A2R9AUY3_A0A2R9AUY3_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_A0A2U3WXG8_A0A2U3WXG8_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_A0A2U3YBW7_A0A2U3YBW7_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_A0A2Y9ECA7_A0A2Y9ECA7_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_A0A2Y9JFT5_A0A2Y9JFT5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_A0A2Y9LXQ9_A0A2Y9LXQ9_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YD58_M3YD58_MUSPF_9669 and tr_A0A2Y9EHP9_A0A2Y9EHP9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_A0A3B3HKG4_A0A3B3HKG4_ORYLA_8090 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_G3S6N6_G3S6N6_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_H2PHB8_H2PHB8_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_G1KRV9_G1KRV9_ANOCA_28377 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_E2RRX4_E2RRX4_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_H2QRZ5_H2QRZ5_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_F6PV64_F6PV64_MONDO_13616 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_W5NYV4_W5NYV4_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_M4A7N9_M4A7N9_XIPMA_8083 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_I3KM71_I3KM71_ORENI_8128 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_I3MRQ4_I3MRQ4_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_H0XXQ4_H0XXQ4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_A0A3B5KHL5_A0A3B5KHL5_TAKRU_31033 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and sp_Q12951_FOXI1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_G5B466_G5B466_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_Q4RNB0_Q4RNB0_TETNG_99883 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_G3UKV8_G3UKV8_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_G3X2P6_G3X2P6_SARHA_9305 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_H0YTK2_H0YTK2_TAEGU_59729 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and sp_Q6P8A3_FXI1E_XENTR_8364 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_A0A2R8M2C6_A0A2R8M2C6_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_F1RR95_F1RR95_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_H3BEQ4_H3BEQ4_LATCH_7897 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_D2I7N9_D2I7N9_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_E1BPY1_E1BPY1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_L5L0U2_L5L0U2_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_M3VVI1_M3VVI1_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_U3K4K9_U3K4K9_FICAL_59894 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_A0A087YCP1_A0A087YCP1_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_A0A091DPS9_A0A091DPS9_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_A0A091EBU0_A0A091EBU0_CORBR_85066 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_A0A093QDW4_A0A093QDW4_9PASS_328815 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_A0A091GA95_A0A091GA95_9AVES_55661 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_A0A1L8GVF7_A0A1L8GVF7_XENLA_8355 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_A0A1L8GXG3_A0A1L8GXG3_XENLA_8355 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_A0A1U7TH07_A0A1U7TH07_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_A0A2I4CI02_A0A2I4CI02_9TELE_52670 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_A0A218UN79_A0A218UN79_9PASE_299123 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_A0A2R8ZMY1_A0A2R8ZMY1_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_A0A2U3VC07_A0A2U3VC07_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_A0A2U3YVS5_A0A2U3YVS5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_A0A2Y9DBI4_A0A2Y9DBI4_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_A0A2Y9IQ23_A0A2Y9IQ23_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YNH5_M3YNH5_MUSPF_9669 and tr_A0A384C8A2_A0A384C8A2_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_G3RF46_G3RF46_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_H2NRQ1_H2NRQ1_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_H2QBP0_H2QBP0_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_F7DSV8_F7DSV8_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_W5PPV4_W5PPV4_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_I3ND78_I3ND78_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_H0XIF7_H0XIF7_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and sp_Q12952_FOXL1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_A0A1D5RI96_A0A1D5RI96_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_A0A2R8MIK2_A0A2R8MIK2_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_F1ME43_F1ME43_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_L5JP00_L5JP00_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_A0A096NS03_A0A096NS03_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_A0A0D9SAX8_A0A0D9SAX8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_A0A1S3A9K4_A0A1S3A9K4_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_A0A2K5L3E2_A0A2K5L3E2_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_A0A2K6D0W0_A0A2K6D0W0_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_A0A2K5XRU4_A0A2K5XRU4_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_A0A2U3VC91_A0A2U3VC91_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_A0A2U3YL14_A0A2U3YL14_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_A0A2Y9DN74_A0A2Y9DN74_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_A0A2Y9K157_A0A2Y9K157_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z8G4_M3Z8G4_MUSPF_9669 and tr_A0A384D1R7_A0A384D1R7_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A3B3HAK1_A0A3B3HAK1_ORYLA_8090 and tr_M4AZG2_M4AZG2_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A3B3HAK1_A0A3B3HAK1_ORYLA_8090 and tr_I3JGT5_I3JGT5_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B3HAK1_A0A3B3HAK1_ORYLA_8090 and tr_H2RVG0_H2RVG0_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A0A3B3HAK1_A0A3B3HAK1_ORYLA_8090 and tr_G3NMP9_G3NMP9_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A3B3HAK1_A0A3B3HAK1_ORYLA_8090 and tr_A0A087YST3_A0A087YST3_POEFO_48698 are exactly identical! WARNING: Sequences tr_C1K2Y7_C1K2Y7_ORYLA_8090 and tr_I3L020_I3L020_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2MYZ8_H2MYZ8_ORYLA_8090 and tr_M4AV22_M4AV22_XIPMA_8083 are exactly identical! WARNING: Sequences tr_H2MYZ8_H2MYZ8_ORYLA_8090 and tr_I3K139_I3K139_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2MYZ8_H2MYZ8_ORYLA_8090 and tr_H2SR73_H2SR73_TAKRU_31033 are exactly identical! WARNING: Sequences tr_H2MYZ8_H2MYZ8_ORYLA_8090 and tr_H3CA67_H3CA67_TETNG_99883 are exactly identical! WARNING: Sequences tr_H2MYZ8_H2MYZ8_ORYLA_8090 and tr_G3NK14_G3NK14_GASAC_69293 are exactly identical! WARNING: Sequences tr_H2MYZ8_H2MYZ8_ORYLA_8090 and tr_A0A087XTC8_A0A087XTC8_POEFO_48698 are exactly identical! WARNING: Sequences tr_O42098_O42098_ORYLA_8090 and tr_W5NC73_W5NC73_LEPOC_7918 are exactly identical! WARNING: Sequences tr_O42098_O42098_ORYLA_8090 and tr_A0A2U9B3Q4_A0A2U9B3Q4_SCOMX_52904 are exactly identical! WARNING: Sequences tr_G1QIC1_G1QIC1_NOMLE_61853 and tr_H2Q2R9_H2Q2R9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QIC1_G1QIC1_NOMLE_61853 and tr_A0A096NSS7_A0A096NSS7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QIC1_G1QIC1_NOMLE_61853 and tr_A0A0D9QWQ1_A0A0D9QWQ1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QIC1_G1QIC1_NOMLE_61853 and tr_A0A2K5LLP7_A0A2K5LLP7_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QIC1_G1QIC1_NOMLE_61853 and tr_A0A2K6BHH4_A0A2K6BHH4_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QIC1_G1QIC1_NOMLE_61853 and tr_A0A2R9BTX1_A0A2R9BTX1_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QIC1_G1QIC1_NOMLE_61853 and tr_A0A2Y9N1E1_A0A2Y9N1E1_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1QIC1_G1QIC1_NOMLE_61853 and tr_A0A2Y9SG64_A0A2Y9SG64_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1Q5G2_G1Q5G2_MYOLU_59463 and tr_G5AQW8_G5AQW8_HETGA_10181 are exactly identical! WARNING: Sequences tr_G1Q5G2_G1Q5G2_MYOLU_59463 and tr_A0A091EBH9_A0A091EBH9_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G3HJJ4_G3HJJ4_CRIGR_10029 and tr_A0A1U7QKY9_A0A1U7QKY9_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3QV33_G3QV33_GORGO_9595 and sp_Q6ZQN5_FOXI2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QV33_G3QV33_GORGO_9595 and tr_F1SDK7_F1SDK7_PIG_9823 are exactly identical! WARNING: Sequences tr_G3R1I1_G3R1I1_GORGO_9595 and tr_G1LWN1_G1LWN1_AILME_9646 are exactly identical! WARNING: Sequences tr_G3R1I1_G3R1I1_GORGO_9595 and tr_A0A096NKI7_A0A096NKI7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1N5W4_G1N5W4_MELGA_9103 and tr_A0A226PGY4_A0A226PGY4_COLVI_9014 are exactly identical! WARNING: Sequences tr_H9GD52_H9GD52_ANOCA_28377 and tr_K7FES1_K7FES1_PELSI_13735 are exactly identical! WARNING: Sequences tr_H9GD52_H9GD52_ANOCA_28377 and tr_A0A151NDG2_A0A151NDG2_ALLMI_8496 are exactly identical! WARNING: Sequences tr_G1SFY5_G1SFY5_RABIT_9986 and tr_A0A2U9BIW8_A0A2U9BIW8_SCOMX_52904 are exactly identical! WARNING: Sequences tr_F6WAA9_F6WAA9_MONDO_13616 and tr_G3WIC0_G3WIC0_SARHA_9305 are exactly identical! WARNING: Sequences tr_B0W483_B0W483_CULQU_7176 and tr_Q7PXZ4_Q7PXZ4_ANOGA_7165 are exactly identical! WARNING: Sequences tr_B0W483_B0W483_CULQU_7176 and tr_A0A1J1J4N1_A0A1J1J4N1_9DIPT_568069 are exactly identical! WARNING: Sequences tr_W5P087_W5P087_SHEEP_9940 and tr_H0Z609_H0Z609_TAEGU_59729 are exactly identical! WARNING: Sequences tr_W5P087_W5P087_SHEEP_9940 and tr_G3MX55_G3MX55_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5P087_W5P087_SHEEP_9940 and tr_U3K6L4_U3K6L4_FICAL_59894 are exactly identical! WARNING: Sequences tr_W5P087_W5P087_SHEEP_9940 and tr_W5LB78_W5LB78_ASTMX_7994 are exactly identical! WARNING: Sequences tr_W5P087_W5P087_SHEEP_9940 and tr_A0A0Q3RIC6_A0A0Q3RIC6_AMAAE_12930 are exactly identical! WARNING: Sequences tr_W5P087_W5P087_SHEEP_9940 and tr_A0A1S3FXW5_A0A1S3FXW5_DIPOR_10020 are exactly identical! WARNING: Sequences tr_W5P087_W5P087_SHEEP_9940 and tr_A0A218VE92_A0A218VE92_9PASE_299123 are exactly identical! WARNING: Sequences tr_W5P087_W5P087_SHEEP_9940 and tr_A0A226NMQ1_A0A226NMQ1_CALSU_9009 are exactly identical! WARNING: Sequences tr_W5P087_W5P087_SHEEP_9940 and tr_A0A226PG79_A0A226PG79_COLVI_9014 are exactly identical! WARNING: Sequences tr_W5P087_W5P087_SHEEP_9940 and tr_A0A383YPM8_A0A383YPM8_BALAS_310752 are exactly identical! WARNING: Sequences tr_W5PPS2_W5PPS2_SHEEP_9940 and sp_Q63246_FOXC2_RAT_10116 are exactly identical! WARNING: Sequences tr_W5PPS2_W5PPS2_SHEEP_9940 and tr_A0A1U7QG24_A0A1U7QG24_MESAU_10036 are exactly identical! WARNING: Sequences tr_W5PPS2_W5PPS2_SHEEP_9940 and tr_A0A2K5ZA29_A0A2K5ZA29_MANLE_9568 are exactly identical! WARNING: Sequences tr_D4A7G2_D4A7G2_RAT_10116 and tr_A0A1U7QE66_A0A1U7QE66_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A3B5PXV6_A0A3B5PXV6_XIPMA_8083 and tr_A0A096LUG5_A0A096LUG5_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5Q1N2_A0A3B5Q1N2_XIPMA_8083 and tr_F6PL89_F6PL89_XENTR_8364 are exactly identical! WARNING: Sequences tr_A0A3B5Q1N2_A0A3B5Q1N2_XIPMA_8083 and tr_H3A9N2_H3A9N2_LATCH_7897 are exactly identical! WARNING: Sequences tr_A0A3B5Q1N2_A0A3B5Q1N2_XIPMA_8083 and tr_H3AJD0_H3AJD0_LATCH_7897 are exactly identical! WARNING: Sequences tr_A0A3B5QPF1_A0A3B5QPF1_XIPMA_8083 and tr_A0A3B5KSL1_A0A3B5KSL1_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A0A3B5QPF1_A0A3B5QPF1_XIPMA_8083 and tr_H3DNT2_H3DNT2_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A3B5QPF1_A0A3B5QPF1_XIPMA_8083 and tr_A0A096MH41_A0A096MH41_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QPF1_A0A3B5QPF1_XIPMA_8083 and tr_A0A2I4BUJ7_A0A2I4BUJ7_9TELE_52670 are exactly identical! WARNING: Sequences tr_M4APG8_M4APG8_XIPMA_8083 and tr_A0A087XI05_A0A087XI05_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4ARG7_M4ARG7_XIPMA_8083 and tr_A0A087YBZ4_A0A087YBZ4_POEFO_48698 are exactly identical! WARNING: Sequences tr_H9J3Q4_H9J3Q4_BOMMO_7091 and tr_A0A0L7LDX3_A0A0L7LDX3_9NEOP_104452 are exactly identical! WARNING: Sequences tr_H9J3Q4_H9J3Q4_BOMMO_7091 and tr_A0A194QY29_A0A194QY29_PAPMA_76193 are exactly identical! WARNING: Sequences tr_H9J3Q4_H9J3Q4_BOMMO_7091 and tr_A0A194QCL2_A0A194QCL2_PAPXU_66420 are exactly identical! WARNING: Sequences tr_H9J3Q4_H9J3Q4_BOMMO_7091 and tr_A0A2A4JNR6_A0A2A4JNR6_HELVI_7102 are exactly identical! WARNING: Sequences tr_H9J3Q4_H9J3Q4_BOMMO_7091 and tr_A0A2J7PU45_A0A2J7PU45_9NEOP_105785 are exactly identical! WARNING: Sequences tr_H9J3Q4_H9J3Q4_BOMMO_7091 and tr_A0A2P8YC33_A0A2P8YC33_BLAGE_6973 are exactly identical! WARNING: Sequences tr_H9J6F9_H9J6F9_BOMMO_7091 and sp_Q17241_SGF1_BOMMO_7091 are exactly identical! WARNING: Sequences tr_H9J6F9_H9J6F9_BOMMO_7091 and tr_A0A0L7LIF3_A0A0L7LIF3_9NEOP_104452 are exactly identical! WARNING: Sequences tr_H9J6F9_H9J6F9_BOMMO_7091 and tr_A0A194RKV3_A0A194RKV3_PAPMA_76193 are exactly identical! WARNING: Sequences tr_H9J6F9_H9J6F9_BOMMO_7091 and tr_A0A194QDB4_A0A194QDB4_PAPXU_66420 are exactly identical! WARNING: Sequences tr_H9J6F9_H9J6F9_BOMMO_7091 and tr_A0A2A4JNT3_A0A2A4JNT3_HELVI_7102 are exactly identical! WARNING: Sequences tr_H9JRW6_H9JRW6_BOMMO_7091 and tr_A0A2A4JD30_A0A2A4JD30_HELVI_7102 are exactly identical! WARNING: Sequences tr_I3JN01_I3JN01_ORENI_8128 and tr_H2T748_H2T748_TAKRU_31033 are exactly identical! WARNING: Sequences tr_I3LXD9_I3LXD9_ICTTR_43179 and tr_A0A1U7Q548_A0A1U7Q548_MESAU_10036 are exactly identical! WARNING: Sequences tr_H0XUG6_H0XUG6_OTOGA_30611 and tr_A0A1S3GQJ7_A0A1S3GQJ7_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A3B5KFH2_A0A3B5KFH2_TAKRU_31033 and tr_A0A3B5KP92_A0A3B5KP92_TAKRU_31033 are exactly identical! WARNING: Sequences tr_H2TWT4_H2TWT4_TAKRU_31033 and tr_H3CSY3_H3CSY3_TETNG_99883 are exactly identical! WARNING: Sequences tr_E5SNE3_E5SNE3_TRISP_6334 and tr_A0A0V1CIE7_A0A0V1CIE7_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5SNE3_E5SNE3_TRISP_6334 and tr_A0A0V0WXU4_A0A0V0WXU4_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5SNE3_E5SNE3_TRISP_6334 and tr_A0A0V0VXB8_A0A0V0VXB8_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5SNE3_E5SNE3_TRISP_6334 and tr_A0A0V0ZXJ4_A0A0V0ZXJ4_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5SNE3_E5SNE3_TRISP_6334 and tr_A0A0V0XND9_A0A0V0XND9_TRIPS_6337 are exactly identical! WARNING: Sequences tr_E5SNE3_E5SNE3_TRISP_6334 and tr_A0A0V1MI36_A0A0V1MI36_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5SNE3_E5SNE3_TRISP_6334 and tr_A0A0V1NSS3_A0A0V1NSS3_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5SNE3_E5SNE3_TRISP_6334 and tr_A0A0V1HT79_A0A0V1HT79_9BILA_268475 are exactly identical! WARNING: Sequences tr_E5SNE3_E5SNE3_TRISP_6334 and tr_A0A0V0U6A9_A0A0V0U6A9_9BILA_144512 are exactly identical! WARNING: Sequences tr_W4XC71_W4XC71_STRPU_7668 and tr_A0A2G8L1Y0_A0A2G8L1Y0_STIJA_307972 are exactly identical! WARNING: Sequences tr_D6WIB5_D6WIB5_TRICA_7070 and tr_U4U1G7_U4U1G7_DENPD_77166 are exactly identical! WARNING: Sequences tr_G3NV19_G3NV19_GASAC_69293 and tr_A0A1S3KJM1_A0A1S3KJM1_SALSA_8030 are exactly identical! WARNING: Sequences tr_G3NV19_G3NV19_GASAC_69293 and tr_A0A1S3P9M2_A0A1S3P9M2_SALSA_8030 are exactly identical! WARNING: Sequences tr_G3NV19_G3NV19_GASAC_69293 and tr_A0A060VU38_A0A060VU38_ONCMY_8022 are exactly identical! WARNING: Sequences tr_G3NV19_G3NV19_GASAC_69293 and tr_A0A060XX93_A0A060XX93_ONCMY_8022 are exactly identical! WARNING: Sequences tr_G3NV84_G3NV84_GASAC_69293 and tr_A0A1S3N0J7_A0A1S3N0J7_SALSA_8030 are exactly identical! WARNING: Sequences tr_G3NV84_G3NV84_GASAC_69293 and tr_A0A060Z8G9_A0A060Z8G9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_G3Q3H2_G3Q3H2_GASAC_69293 and tr_A0A3B1K814_A0A3B1K814_ASTMX_7994 are exactly identical! WARNING: Sequences tr_G3Q3H2_G3Q3H2_GASAC_69293 and tr_A0A0P7VT82_A0A0P7VT82_9TELE_113540 are exactly identical! WARNING: Sequences tr_G3Q3H2_G3Q3H2_GASAC_69293 and tr_A0A1S2ZKU8_A0A1S2ZKU8_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G3Q3H2_G3Q3H2_GASAC_69293 and tr_W5U8S8_W5U8S8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_G3Q3H2_G3Q3H2_GASAC_69293 and tr_A0A2U3UZE9_A0A2U3UZE9_TURTR_9739 are exactly identical! WARNING: Sequences tr_G3Q3H2_G3Q3H2_GASAC_69293 and tr_A0A2U9CBV1_A0A2U9CBV1_SCOMX_52904 are exactly identical! WARNING: Sequences tr_G3Q3H2_G3Q3H2_GASAC_69293 and tr_A0A2Y9PVK1_A0A2Y9PVK1_DELLE_9749 are exactly identical! WARNING: Sequences tr_G3Q3H2_G3Q3H2_GASAC_69293 and tr_A0A2Y9FLT4_A0A2Y9FLT4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G3Q3H2_G3Q3H2_GASAC_69293 and tr_A0A383Z8C3_A0A383Z8C3_BALAS_310752 are exactly identical! WARNING: Sequences tr_G3SR63_G3SR63_LOXAF_9785 and tr_A0A2Y9DHV7_A0A2Y9DHV7_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H2ZCI0_H2ZCI0_CIOSA_51511 and tr_F6WBC7_F6WBC7_CIOIN_7719 are exactly identical! WARNING: Sequences tr_F6QA66_F6QA66_XENTR_8364 and tr_A0A1L8GKY7_A0A1L8GKY7_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q28D67_FXI1C_XENTR_8364 and tr_A0A1L8HKJ8_A0A1L8HKJ8_XENLA_8355 are exactly identical! WARNING: Sequences tr_Q3HWW4_Q3HWW4_XENTR_8364 and tr_A0A1L8FSB6_A0A1L8FSB6_XENLA_8355 are exactly identical! WARNING: Sequences tr_Q3HWW4_Q3HWW4_XENTR_8364 and tr_A0A1L8FXS2_A0A1L8FXS2_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A287BDS9_A0A287BDS9_PIG_9823 and tr_A0A2U3UZD8_A0A2U3UZD8_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A287BDS9_A0A287BDS9_PIG_9823 and tr_A0A2Y9PHV0_A0A2Y9PHV0_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A287BDS9_A0A287BDS9_PIG_9823 and tr_A0A2Y9SH86_A0A2Y9SH86_PHYCD_9755 are exactly identical! WARNING: Sequences tr_E2BKA1_E2BKA1_HARSA_610380 and tr_A0A067QR07_A0A067QR07_ZOONE_136037 are exactly identical! WARNING: Sequences tr_E2BKA1_E2BKA1_HARSA_610380 and tr_A0A2J7Q4V9_A0A2J7Q4V9_9NEOP_105785 are exactly identical! WARNING: Sequences tr_E2BKA1_E2BKA1_HARSA_610380 and tr_A0A2P8YEN2_A0A2P8YEN2_BLAGE_6973 are exactly identical! WARNING: Sequences tr_E2C8S4_E2C8S4_HARSA_610380 and tr_A0A0M8ZR30_A0A0M8ZR30_9HYME_166423 are exactly identical! WARNING: Sequences tr_E2C8S4_E2C8S4_HARSA_610380 and tr_A0A154NYU6_A0A154NYU6_9HYME_178035 are exactly identical! WARNING: Sequences tr_E3LFC3_E3LFC3_CAERE_31234 and tr_A0A260Z9B0_A0A260Z9B0_9PELO_1503980 are exactly identical! WARNING: Sequences tr_H2ZW29_H2ZW29_LATCH_7897 and tr_W5MSU2_W5MSU2_LEPOC_7918 are exactly identical! WARNING: Sequences tr_B3S121_B3S121_TRIAD_10228 and tr_A0A369SM10_A0A369SM10_9METZ_287889 are exactly identical! WARNING: Sequences tr_B3S1K8_B3S1K8_TRIAD_10228 and tr_A0A369SDZ3_A0A369SDZ3_9METZ_287889 are exactly identical! WARNING: Sequences tr_B3S7D9_B3S7D9_TRIAD_10228 and tr_A0A369SQX2_A0A369SQX2_9METZ_287889 are exactly identical! WARNING: Sequences tr_B3S7E1_B3S7E1_TRIAD_10228 and tr_A0A369SLE9_A0A369SLE9_9METZ_287889 are exactly identical! WARNING: Sequences tr_G7P6V3_G7P6V3_MACFA_9541 and tr_A0A2I3MWV6_A0A2I3MWV6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7P6V3_G7P6V3_MACFA_9541 and tr_A0A0D9RCH6_A0A0D9RCH6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G7P6V3_G7P6V3_MACFA_9541 and tr_A0A2K5MTE7_A0A2K5MTE7_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7P6V3_G7P6V3_MACFA_9541 and tr_A0A2K6AY68_A0A2K6AY68_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7P6V3_G7P6V3_MACFA_9541 and tr_A0A2K5YK08_A0A2K5YK08_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A337S314_A0A337S314_FELCA_9685 and tr_A0A2U3W839_A0A2U3W839_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A337S314_A0A337S314_FELCA_9685 and tr_A0A2U3YSB8_A0A2U3YSB8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A3B1ICJ2_A0A3B1ICJ2_ASTMX_7994 and tr_A0A1S3NQ26_A0A1S3NQ26_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A3B1ICJ2_A0A3B1ICJ2_ASTMX_7994 and tr_A0A1S3SZ42_A0A1S3SZ42_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A3B1ICJ2_A0A3B1ICJ2_ASTMX_7994 and tr_A0A060WEB2_A0A060WEB2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A3B1ICJ2_A0A3B1ICJ2_ASTMX_7994 and tr_A0A060YCW3_A0A060YCW3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A3B1JBJ5_A0A3B1JBJ5_ASTMX_7994 and tr_A0A2D0RPK3_A0A2D0RPK3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A016VBM9_A0A016VBM9_9BILA_53326 and tr_A0A0K0DE07_A0A0K0DE07_ANGCA_6313 are exactly identical! WARNING: Sequences tr_A0A067R1N6_A0A067R1N6_ZOONE_136037 and tr_A0A2J7PL54_A0A2J7PL54_9NEOP_105785 are exactly identical! WARNING: Sequences tr_A0A067R1N6_A0A067R1N6_ZOONE_136037 and tr_A0A2P8YWX1_A0A2P8YWX1_BLAGE_6973 are exactly identical! WARNING: Sequences tr_A0A0P7V943_A0A0P7V943_9TELE_113540 and tr_A0A2D0PWM4_A0A2D0PWM4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A151NFQ1_A0A151NFQ1_ALLMI_8496 and tr_A0A1V4JWH3_A0A1V4JWH3_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A151NFQ1_A0A151NFQ1_ALLMI_8496 and tr_A0A226MYZ9_A0A226MYZ9_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A151NMM7_A0A151NMM7_ALLMI_8496 and tr_A0A3Q0GGX0_A0A3Q0GGX0_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0Q3M9C2_A0A0Q3M9C2_AMAAE_12930 and tr_A0A093I2L9_A0A093I2L9_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091J102_A0A091J102_EGRGA_188379 and tr_A0A091G702_A0A091G702_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091J102_A0A091J102_EGRGA_188379 and tr_A0A091IFM1_A0A091IFM1_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091USI2_A0A091USI2_NIPNI_128390 and tr_A0A087QY64_A0A087QY64_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091USI2_A0A091USI2_NIPNI_128390 and tr_A0A3Q0DXK7_A0A3Q0DXK7_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A091USI2_A0A091USI2_NIPNI_128390 and tr_A0A384C8W5_A0A384C8W5_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A1S3D5T9_A0A1S3D5T9_DIACI_121845 and tr_A0A1S3DCY8_A0A1S3DCY8_DIACI_121845 are exactly identical! WARNING: Sequences tr_A0A1S3EUK3_A0A1S3EUK3_DIPOR_10020 and tr_A0A1U7T3S0_A0A1U7T3S0_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A1S3KIZ8_A0A1S3KIZ8_SALSA_8030 and tr_A0A060XX87_A0A060XX87_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3LXL1_A0A1S3LXL1_SALSA_8030 and tr_A0A060WM26_A0A060WM26_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3P9R8_A0A1S3P9R8_SALSA_8030 and tr_A0A060W376_A0A060W376_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3R2Z1_A0A1S3R2Z1_SALSA_8030 and tr_A0A060VUM8_A0A060VUM8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3R355_A0A1S3R355_SALSA_8030 and tr_A0A1S3T560_A0A1S3T560_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3R355_A0A1S3R355_SALSA_8030 and tr_A0A1S3T6D2_A0A1S3T6D2_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3R355_A0A1S3R355_SALSA_8030 and tr_A0A060YP83_A0A060YP83_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3R4G2_A0A1S3R4G2_SALSA_8030 and tr_A0A060W0A3_A0A060W0A3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3RPF2_A0A1S3RPF2_SALSA_8030 and tr_A0A060XIY8_A0A060XIY8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1L8GFU3_A0A1L8GFU3_XENLA_8355 and tr_A0A1L8GMA2_A0A1L8GMA2_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A1L8GFU3_A0A1L8GFU3_XENLA_8355 and tr_A0A2U9C345_A0A2U9C345_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A2U3UZH3_A0A2U3UZH3_TURTR_9739 and tr_A0A2Y9NUL6_A0A2Y9NUL6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3UZH3_A0A2U3UZH3_TURTR_9739 and tr_A0A2Y9EWE6_A0A2Y9EWE6_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 618 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C009/3_mltree/Q9C009.raxml.reduced.phy Alignment comprises 1 partitions and 82 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 82 / 82 Gaps: 0.14 % Invariant sites: 10.98 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C009/3_mltree/Q9C009.raxml.rba Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1000 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 82 / 6560 [00:00:00] Data distribution: max. searches per worker: 10 Starting ML tree search with 20 distinct starting trees [00:00:00 -86017.977387] Initial branch length optimization [00:00:03 -72189.895444] Model parameter optimization (eps = 10.000000) [00:00:32 -71940.960721] AUTODETECT spr round 1 (radius: 5) [00:02:22 -30532.301596] AUTODETECT spr round 2 (radius: 10) [00:03:57 -18722.046933] AUTODETECT spr round 3 (radius: 15) [00:05:30 -14387.732823] AUTODETECT spr round 4 (radius: 20) [00:07:13 -12623.019409] AUTODETECT spr round 5 (radius: 25) [00:09:56 -11640.732475] SPR radius for FAST iterations: 25 (autodetect) [00:09:56 -11640.732475] Model parameter optimization (eps = 3.000000) [00:10:27 -11620.207006] FAST spr round 1 (radius: 25) [00:12:43 -9561.802251] FAST spr round 2 (radius: 25) [00:14:32 -8348.067168] FAST spr round 3 (radius: 25) [00:15:45 -8106.415681] FAST spr round 4 (radius: 25) [00:16:58 -8104.046696] FAST spr round 5 (radius: 25) [00:18:07 -8102.960102] FAST spr round 6 (radius: 25) [00:19:17 -8102.960028] Model parameter optimization (eps = 1.000000) [00:19:22 -8102.875253] SLOW spr round 1 (radius: 5) [00:20:40 -8102.483989] SLOW spr round 2 (radius: 5) [00:21:54 -8102.483966] SLOW spr round 3 (radius: 10) [00:23:16 -8096.596998] SLOW spr round 4 (radius: 5) [00:24:40 -8094.956147] SLOW spr round 5 (radius: 5) [00:25:59 -8094.955944] SLOW spr round 6 (radius: 10) [00:27:20 -8094.506535] SLOW spr round 7 (radius: 5) [00:28:43 -8092.478880] SLOW spr round 8 (radius: 5) [00:30:00 -8092.478838] SLOW spr round 9 (radius: 10) [00:31:20 -8092.478835] SLOW spr round 10 (radius: 15) [00:33:02 -8027.692551] SLOW spr round 11 (radius: 5) [00:34:32 -7997.999589] SLOW spr round 12 (radius: 5) [00:35:55 -7992.385584] SLOW spr round 13 (radius: 5) [00:37:09 -7992.385474] SLOW spr round 14 (radius: 10) [00:38:28 -7991.976113] SLOW spr round 15 (radius: 5) [00:39:46 -7991.976028] SLOW spr round 16 (radius: 10) [00:41:00 -7991.131815] SLOW spr round 17 (radius: 5) [00:42:15 -7991.131803] SLOW spr round 18 (radius: 10) [00:43:28 -7991.131802] SLOW spr round 19 (radius: 15) [00:44:59 -7988.679235] SLOW spr round 20 (radius: 5) [00:46:19 -7988.679134] SLOW spr round 21 (radius: 10) [00:47:39 -7979.190008] SLOW spr round 22 (radius: 5) [00:48:53 -7979.186861] SLOW spr round 23 (radius: 10) [00:49:20] [worker #1] ML tree search #2, logLikelihood: -8061.586026 [00:50:06 -7979.186710] SLOW spr round 24 (radius: 15) [00:51:36 -7979.186688] SLOW spr round 25 (radius: 20) [00:53:45 -7979.186648] SLOW spr round 26 (radius: 25) [00:56:17 -7979.186648] Model parameter optimization (eps = 0.100000) [00:56:25] [worker #0] ML tree search #1, logLikelihood: -7978.926084 [00:56:25 -85433.440843] Initial branch length optimization [00:56:27 -71437.136119] Model parameter optimization (eps = 10.000000) [00:56:45 -71149.588627] AUTODETECT spr round 1 (radius: 5) [00:58:15 -32314.665062] AUTODETECT spr round 2 (radius: 10) [00:59:43 -19839.064228] AUTODETECT spr round 3 (radius: 15) [01:01:19 -15008.996029] AUTODETECT spr round 4 (radius: 20) [01:03:05 -12106.918706] AUTODETECT spr round 5 (radius: 25) [01:04:49 -11113.706983] SPR radius for FAST iterations: 25 (autodetect) [01:04:49 -11113.706983] Model parameter optimization (eps = 3.000000) [01:05:02 -11104.704098] FAST spr round 1 (radius: 25) [01:06:27 -9225.620014] FAST spr round 2 (radius: 25) [01:07:46 -9006.666635] FAST spr round 3 (radius: 25) [01:09:02 -8994.137569] FAST spr round 4 (radius: 25) [01:10:15 -8991.975510] FAST spr round 5 (radius: 25) [01:11:28 -8991.974257] Model parameter optimization (eps = 1.000000) [01:11:40 -8989.971688] SLOW spr round 1 (radius: 5) [01:12:59 -8988.415121] SLOW spr round 2 (radius: 5) [01:14:17 -8988.415063] SLOW spr round 3 (radius: 10) [01:15:40 -8988.415035] SLOW spr round 4 (radius: 15) [01:17:35 -8562.010802] SLOW spr round 5 (radius: 5) [01:19:08 -8211.264052] SLOW spr round 6 (radius: 5) [01:20:34 -8113.344737] SLOW spr round 7 (radius: 5) [01:21:54 -8110.162675] SLOW spr round 8 (radius: 5) [01:23:10 -8109.760569] SLOW spr round 9 (radius: 5) [01:24:28 -8109.760405] SLOW spr round 10 (radius: 10) [01:25:51 -8096.297227] SLOW spr round 11 (radius: 5) [01:26:00] [worker #1] ML tree search #4, logLikelihood: -9990.969211 [01:27:18 -8093.028082] SLOW spr round 12 (radius: 5) [01:28:36 -8093.028037] SLOW spr round 13 (radius: 10) [01:29:57 -8093.028034] SLOW spr round 14 (radius: 15) [01:31:46 -8091.166832] SLOW spr round 15 (radius: 5) [01:33:17 -8091.166750] SLOW spr round 16 (radius: 10) [01:34:44 -8090.490859] SLOW spr round 17 (radius: 5) [01:36:09 -8090.490856] SLOW spr round 18 (radius: 10) [01:37:32 -8090.490856] SLOW spr round 19 (radius: 15) [01:39:21 -8090.490856] SLOW spr round 20 (radius: 20) [01:41:48 -8090.490856] SLOW spr round 21 (radius: 25) [01:44:43 -8016.450592] SLOW spr round 22 (radius: 5) [01:46:20 -7977.245541] SLOW spr round 23 (radius: 5) [01:47:46 -7976.371644] SLOW spr round 24 (radius: 5) [01:49:04 -7976.067229] SLOW spr round 25 (radius: 5) [01:50:22 -7976.066284] SLOW spr round 26 (radius: 10) [01:51:44 -7976.066275] SLOW spr round 27 (radius: 15) [01:53:34 -7976.066262] SLOW spr round 28 (radius: 20) [01:56:01 -7976.066261] SLOW spr round 29 (radius: 25) [01:58:50 -7976.066261] Model parameter optimization (eps = 0.100000) [01:58:58] [worker #0] ML tree search #3, logLikelihood: -7975.853787 [01:58:58 -86607.377653] Initial branch length optimization [01:59:00 -72378.820491] Model parameter optimization (eps = 10.000000) [01:59:18 -72111.327305] AUTODETECT spr round 1 (radius: 5) [02:00:49 -29634.457216] AUTODETECT spr round 2 (radius: 10) [02:02:21 -18451.783988] AUTODETECT spr round 3 (radius: 15) [02:03:57 -12644.337582] AUTODETECT spr round 4 (radius: 20) [02:05:39 -10635.278432] AUTODETECT spr round 5 (radius: 25) [02:07:33 -10139.357716] SPR radius for FAST iterations: 25 (autodetect) [02:07:33 -10139.357716] Model parameter optimization (eps = 3.000000) [02:07:49 -10128.204385] FAST spr round 1 (radius: 25) [02:09:14 -8855.306345] FAST spr round 2 (radius: 25) [02:10:35 -8697.053182] FAST spr round 3 (radius: 25) [02:11:54 -8687.177347] FAST spr round 4 (radius: 25) [02:13:10 -8683.246002] FAST spr round 5 (radius: 25) [02:14:25 -8682.999039] FAST spr round 6 (radius: 25) [02:15:39 -8682.998971] Model parameter optimization (eps = 1.000000) [02:15:49 -8682.673670] SLOW spr round 1 (radius: 5) [02:17:10 -8681.390613] SLOW spr round 2 (radius: 5) [02:18:29 -8681.390586] SLOW spr round 3 (radius: 10) [02:19:57 -8572.138862] SLOW spr round 4 (radius: 5) [02:21:29 -8524.635292] SLOW spr round 5 (radius: 5) [02:22:54 -8513.948793] SLOW spr round 6 (radius: 5) [02:24:15 -8513.943179] SLOW spr round 7 (radius: 10) [02:25:41 -8513.233043] SLOW spr round 8 (radius: 5) [02:27:12 -8512.438385] SLOW spr round 9 (radius: 5) [02:28:34 -8512.438007] SLOW spr round 10 (radius: 10) [02:29:58 -8512.437957] SLOW spr round 11 (radius: 15) [02:31:43 -8512.437948] SLOW spr round 12 (radius: 20) [02:34:01 -8241.713102] SLOW spr round 13 (radius: 5) [02:34:53] [worker #1] ML tree search #6, logLikelihood: -8048.622920 [02:35:38 -8229.713172] SLOW spr round 14 (radius: 5) [02:37:06 -8229.650626] SLOW spr round 15 (radius: 10) [02:38:31 -8227.528455] SLOW spr round 16 (radius: 5) [02:39:59 -8227.528447] SLOW spr round 17 (radius: 10) [02:41:23 -8227.513679] SLOW spr round 18 (radius: 15) [02:43:07 -8227.513677] SLOW spr round 19 (radius: 20) [02:45:28 -8226.006719] SLOW spr round 20 (radius: 5) [02:47:03 -8225.674043] SLOW spr round 21 (radius: 5) [02:48:30 -8225.673826] SLOW spr round 22 (radius: 10) [02:49:55 -8225.673826] SLOW spr round 23 (radius: 15) [02:51:41 -8225.673826] SLOW spr round 24 (radius: 20) [02:54:02 -8225.673826] SLOW spr round 25 (radius: 25) [02:56:51 -8225.673763] Model parameter optimization (eps = 0.100000) [02:56:58] [worker #0] ML tree search #5, logLikelihood: -8224.838212 [02:56:58 -85995.123033] Initial branch length optimization [02:57:00 -71719.806871] Model parameter optimization (eps = 10.000000) [02:57:16 -71413.836879] AUTODETECT spr round 1 (radius: 5) [02:58:39 -31167.546626] AUTODETECT spr round 2 (radius: 10) [03:00:14 -19587.436380] AUTODETECT spr round 3 (radius: 15) [03:01:52 -14132.342640] AUTODETECT spr round 4 (radius: 20) [03:03:32 -12043.307381] AUTODETECT spr round 5 (radius: 25) [03:05:33 -10442.915629] SPR radius for FAST iterations: 25 (autodetect) [03:05:33 -10442.915629] Model parameter optimization (eps = 3.000000) [03:05:47 -10430.043762] FAST spr round 1 (radius: 25) [03:07:14 -8509.466849] FAST spr round 2 (radius: 25) [03:08:34 -8147.284569] FAST spr round 3 (radius: 25) [03:09:55 -8091.757399] FAST spr round 4 (radius: 25) [03:11:10 -8056.072742] FAST spr round 5 (radius: 25) [03:12:25 -8033.187912] FAST spr round 6 (radius: 25) [03:13:35 -8033.187558] Model parameter optimization (eps = 1.000000) [03:13:42 -8032.314033] SLOW spr round 1 (radius: 5) [03:15:00 -8031.351841] SLOW spr round 2 (radius: 5) [03:16:18 -8031.143958] SLOW spr round 3 (radius: 5) [03:17:35 -8031.143665] SLOW spr round 4 (radius: 10) [03:19:02 -8020.033962] SLOW spr round 5 (radius: 5) [03:20:31 -8017.635794] SLOW spr round 6 (radius: 5) [03:21:35] [worker #1] ML tree search #8, logLikelihood: -7977.159106 [03:21:52 -8000.802582] SLOW spr round 7 (radius: 5) [03:23:11 -8000.532689] SLOW spr round 8 (radius: 5) [03:24:31 -8000.532596] SLOW spr round 9 (radius: 10) [03:25:55 -8000.037213] SLOW spr round 10 (radius: 5) [03:27:23 -8000.037181] SLOW spr round 11 (radius: 10) [03:28:49 -8000.020381] SLOW spr round 12 (radius: 15) [03:30:35 -7997.964977] SLOW spr round 13 (radius: 5) [03:32:09 -7997.541987] SLOW spr round 14 (radius: 5) [03:33:34 -7994.181306] SLOW spr round 15 (radius: 5) [03:34:54 -7994.181238] SLOW spr round 16 (radius: 10) [03:36:17 -7994.181130] SLOW spr round 17 (radius: 15) [03:38:02 -7994.181108] SLOW spr round 18 (radius: 20) [03:40:41 -7994.181108] SLOW spr round 19 (radius: 25) [03:43:52 -7977.341558] SLOW spr round 20 (radius: 5) [03:45:24 -7977.341538] SLOW spr round 21 (radius: 10) [03:46:56 -7977.341500] SLOW spr round 22 (radius: 15) [03:48:39 -7977.341490] SLOW spr round 23 (radius: 20) [03:51:16 -7977.341487] SLOW spr round 24 (radius: 25) [03:54:26 -7977.341487] Model parameter optimization (eps = 0.100000) [03:54:31] [worker #0] ML tree search #7, logLikelihood: -7977.303535 [03:54:31 -85505.919204] Initial branch length optimization [03:54:34 -71675.095573] Model parameter optimization (eps = 10.000000) [03:54:49 -71420.617929] AUTODETECT spr round 1 (radius: 5) [03:56:17 -31370.154153] AUTODETECT spr round 2 (radius: 10) [03:57:53 -17374.155780] AUTODETECT spr round 3 (radius: 15) [03:59:23 -13499.040125] AUTODETECT spr round 4 (radius: 20) [04:00:59 -12024.967353] AUTODETECT spr round 5 (radius: 25) [04:02:50 -10833.849079] SPR radius for FAST iterations: 25 (autodetect) [04:02:50 -10833.849079] Model parameter optimization (eps = 3.000000) [04:03:06 -10817.389891] FAST spr round 1 (radius: 25) [04:04:32 -8569.098327] FAST spr round 2 (radius: 25) [04:05:52 -8330.774331] FAST spr round 3 (radius: 25) [04:07:10 -8316.008585] FAST spr round 4 (radius: 25) [04:08:24 -8316.008582] Model parameter optimization (eps = 1.000000) [04:08:32 -8315.760381] SLOW spr round 1 (radius: 5) [04:08:39] [worker #1] ML tree search #10, logLikelihood: -8000.858319 [04:09:51 -8315.340579] SLOW spr round 2 (radius: 5) [04:11:11 -8314.306417] SLOW spr round 3 (radius: 5) [04:12:32 -8313.632843] SLOW spr round 4 (radius: 5) [04:13:49 -8313.632836] SLOW spr round 5 (radius: 10) [04:15:14 -8303.027602] SLOW spr round 6 (radius: 5) [04:16:42 -8302.185423] SLOW spr round 7 (radius: 5) [04:18:01 -8301.491992] SLOW spr round 8 (radius: 5) [04:19:19 -8301.491960] SLOW spr round 9 (radius: 10) [04:20:42 -8297.135826] SLOW spr round 10 (radius: 5) [04:22:08 -8297.135818] SLOW spr round 11 (radius: 10) [04:23:34 -8296.950589] SLOW spr round 12 (radius: 5) [04:25:00 -8296.950559] SLOW spr round 13 (radius: 10) [04:26:23 -8296.950558] SLOW spr round 14 (radius: 15) [04:28:06 -8285.293952] SLOW spr round 15 (radius: 5) [04:29:38 -8284.622138] SLOW spr round 16 (radius: 5) [04:31:01 -8284.547719] SLOW spr round 17 (radius: 10) [04:32:25 -8284.547683] SLOW spr round 18 (radius: 15) [04:34:07 -8284.547682] SLOW spr round 19 (radius: 20) [04:36:19 -8284.547682] SLOW spr round 20 (radius: 25) [04:38:59 -8227.124427] SLOW spr round 21 (radius: 5) [04:40:34 -8223.274501] SLOW spr round 22 (radius: 5) [04:42:01 -8223.274498] SLOW spr round 23 (radius: 10) [04:43:21 -8223.274498] SLOW spr round 24 (radius: 15) [04:44:55 -8223.274498] SLOW spr round 25 (radius: 20) [04:46:56 -8223.274498] SLOW spr round 26 (radius: 25) [04:49:22 -8223.274498] Model parameter optimization (eps = 0.100000) [04:49:29] [worker #0] ML tree search #9, logLikelihood: -8223.031953 [04:49:30 -85287.536246] Initial branch length optimization [04:49:32 -71395.486960] Model parameter optimization (eps = 10.000000) [04:49:48 -71144.179736] AUTODETECT spr round 1 (radius: 5) [04:49:52] [worker #1] ML tree search #12, logLikelihood: -7978.964473 [04:51:10 -32510.157244] AUTODETECT spr round 2 (radius: 10) [04:52:30 -20488.942284] AUTODETECT spr round 3 (radius: 15) [04:53:58 -15168.287989] AUTODETECT spr round 4 (radius: 20) [04:55:31 -12634.180227] AUTODETECT spr round 5 (radius: 25) [04:57:06 -11588.696974] SPR radius for FAST iterations: 25 (autodetect) [04:57:06 -11588.696974] Model parameter optimization (eps = 3.000000) [04:57:20 -11579.227432] FAST spr round 1 (radius: 25) [04:58:35 -9412.228585] FAST spr round 2 (radius: 25) [04:59:49 -8554.960009] FAST spr round 3 (radius: 25) [05:00:57 -8374.860871] FAST spr round 4 (radius: 25) [05:02:08 -8234.976804] FAST spr round 5 (radius: 25) [05:03:17 -8195.099284] FAST spr round 6 (radius: 25) [05:04:22 -8194.347186] FAST spr round 7 (radius: 25) [05:05:25 -8194.347185] Model parameter optimization (eps = 1.000000) [05:05:31 -8193.877953] SLOW spr round 1 (radius: 5) [05:06:42 -8190.114933] SLOW spr round 2 (radius: 5) [05:07:52 -8187.798721] SLOW spr round 3 (radius: 5) [05:09:02 -8187.798479] SLOW spr round 4 (radius: 10) [05:10:17 -8081.529073] SLOW spr round 5 (radius: 5) [05:11:35 -8061.465320] SLOW spr round 6 (radius: 5) [05:12:46 -8058.980211] SLOW spr round 7 (radius: 5) [05:13:56 -8058.980095] SLOW spr round 8 (radius: 10) [05:15:10 -8058.980000] SLOW spr round 9 (radius: 15) [05:16:45 -8005.706570] SLOW spr round 10 (radius: 5) [05:18:09 -7992.930356] SLOW spr round 11 (radius: 5) [05:19:24 -7990.852082] SLOW spr round 12 (radius: 5) [05:20:34 -7990.851822] SLOW spr round 13 (radius: 10) [05:21:48 -7989.249618] SLOW spr round 14 (radius: 5) [05:23:12 -7983.011941] SLOW spr round 15 (radius: 5) [05:24:30 -7983.011915] SLOW spr round 16 (radius: 10) [05:25:52 -7983.011882] SLOW spr round 17 (radius: 15) [05:27:32 -7983.011832] SLOW spr round 18 (radius: 20) [05:29:45 -7983.011815] SLOW spr round 19 (radius: 25) [05:32:26 -7983.011813] Model parameter optimization (eps = 0.100000) [05:32:34] [worker #0] ML tree search #11, logLikelihood: -7982.642731 [05:32:34 -85916.143882] Initial branch length optimization [05:32:36 -72685.316031] Model parameter optimization (eps = 10.000000) [05:32:56 -72396.265971] AUTODETECT spr round 1 (radius: 5) [05:34:24 -29132.503616] AUTODETECT spr round 2 (radius: 10) [05:35:50 -18018.328948] AUTODETECT spr round 3 (radius: 15) [05:37:23 -13884.424607] AUTODETECT spr round 4 (radius: 20) [05:39:09 -11014.214427] AUTODETECT spr round 5 (radius: 25) [05:41:29 -9986.324399] SPR radius for FAST iterations: 25 (autodetect) [05:41:29 -9986.324399] Model parameter optimization (eps = 3.000000) [05:41:43 -9974.838438] FAST spr round 1 (radius: 25) [05:43:09 -8247.250504] FAST spr round 2 (radius: 25) [05:44:26 -8067.704704] FAST spr round 3 (radius: 25) [05:45:39 -8062.217097] FAST spr round 4 (radius: 25) [05:46:49 -8062.216962] Model parameter optimization (eps = 1.000000) [05:46:54 -8061.848533] SLOW spr round 1 (radius: 5) [05:48:12 -8061.530234] SLOW spr round 2 (radius: 5) [05:49:28 -8061.529482] SLOW spr round 3 (radius: 10) [05:50:49 -8060.963913] SLOW spr round 4 (radius: 5) [05:52:15 -8058.181414] SLOW spr round 5 (radius: 5) [05:53:31 -8058.177143] SLOW spr round 6 (radius: 10) [05:54:53 -8058.177011] SLOW spr round 7 (radius: 15) [05:56:39 -8053.214630] SLOW spr round 8 (radius: 5) [05:57:49] [worker #1] ML tree search #14, logLikelihood: -7987.784757 [05:58:09 -8046.578648] SLOW spr round 9 (radius: 5) [05:59:29 -8046.578648] SLOW spr round 10 (radius: 10) [06:00:51 -8046.578648] SLOW spr round 11 (radius: 15) [06:02:36 -8046.366914] SLOW spr round 12 (radius: 5) [06:04:06 -8046.366853] SLOW spr round 13 (radius: 10) [06:05:35 -8046.258144] SLOW spr round 14 (radius: 5) [06:06:57 -8046.258144] SLOW spr round 15 (radius: 10) [06:08:18 -8046.258144] SLOW spr round 16 (radius: 15) [06:10:02 -8046.258144] SLOW spr round 17 (radius: 20) [06:12:32 -7996.413948] SLOW spr round 18 (radius: 5) [06:14:05 -7989.082521] SLOW spr round 19 (radius: 5) [06:15:26 -7989.080878] SLOW spr round 20 (radius: 10) [06:16:48 -7989.080517] SLOW spr round 21 (radius: 15) [06:18:32 -7987.764040] SLOW spr round 22 (radius: 5) [06:20:01 -7987.438629] SLOW spr round 23 (radius: 5) [06:21:21 -7987.438297] SLOW spr round 24 (radius: 10) [06:22:42 -7987.438295] SLOW spr round 25 (radius: 15) [06:24:24 -7987.438295] SLOW spr round 26 (radius: 20) [06:26:59 -7987.438295] SLOW spr round 27 (radius: 25) [06:30:03 -7987.438295] Model parameter optimization (eps = 0.100000) [06:30:07] [worker #0] ML tree search #13, logLikelihood: -7987.419047 [06:30:07 -85061.800138] Initial branch length optimization [06:30:09 -70938.089500] Model parameter optimization (eps = 10.000000) [06:30:33 -70638.814250] AUTODETECT spr round 1 (radius: 5) [06:32:03 -31717.309042] AUTODETECT spr round 2 (radius: 10) [06:33:49 -20079.597652] AUTODETECT spr round 3 (radius: 15) [06:35:24 -15698.670148] AUTODETECT spr round 4 (radius: 20) [06:37:07 -12752.837809] AUTODETECT spr round 5 (radius: 25) [06:39:01 -11098.895461] SPR radius for FAST iterations: 25 (autodetect) [06:39:01 -11098.895461] Model parameter optimization (eps = 3.000000) [06:39:18 -11089.287807] FAST spr round 1 (radius: 25) [06:39:37] [worker #1] ML tree search #16, logLikelihood: -8000.097038 [06:40:44 -8755.524428] FAST spr round 2 (radius: 25) [06:42:00 -8459.299475] FAST spr round 3 (radius: 25) [06:43:14 -8245.434287] FAST spr round 4 (radius: 25) [06:44:29 -8193.601371] FAST spr round 5 (radius: 25) [06:45:40 -8193.024107] FAST spr round 6 (radius: 25) [06:46:51 -8192.388687] FAST spr round 7 (radius: 25) [06:48:01 -8192.388675] Model parameter optimization (eps = 1.000000) [06:48:15 -8189.303326] SLOW spr round 1 (radius: 5) [06:49:33 -8187.112875] SLOW spr round 2 (radius: 5) [06:50:51 -8186.961986] SLOW spr round 3 (radius: 5) [06:52:05 -8186.961782] SLOW spr round 4 (radius: 10) [06:53:28 -8185.619161] SLOW spr round 5 (radius: 5) [06:54:54 -8180.651989] SLOW spr round 6 (radius: 5) [06:56:11 -8180.651957] SLOW spr round 7 (radius: 10) [06:57:33 -8179.644206] SLOW spr round 8 (radius: 5) [06:58:56 -8179.644206] SLOW spr round 9 (radius: 10) [07:00:19 -8178.955655] SLOW spr round 10 (radius: 5) [07:01:46 -8178.278540] SLOW spr round 11 (radius: 5) [07:03:02 -8178.278533] SLOW spr round 12 (radius: 10) [07:04:24 -8178.278533] SLOW spr round 13 (radius: 15) [07:06:11 -8134.725738] SLOW spr round 14 (radius: 5) [07:07:41 -8134.122487] SLOW spr round 15 (radius: 5) [07:09:04 -8132.813548] SLOW spr round 16 (radius: 5) [07:10:20 -8132.142027] SLOW spr round 17 (radius: 5) [07:11:36 -8132.142027] SLOW spr round 18 (radius: 10) [07:12:56 -8132.142027] SLOW spr round 19 (radius: 15) [07:14:43 -8132.142027] SLOW spr round 20 (radius: 20) [07:17:08 -8037.857306] SLOW spr round 21 (radius: 5) [07:18:40 -7982.039663] SLOW spr round 22 (radius: 5) [07:20:02 -7982.039428] SLOW spr round 23 (radius: 10) [07:21:25 -7980.807102] SLOW spr round 24 (radius: 5) [07:22:49 -7980.807097] SLOW spr round 25 (radius: 10) [07:24:10 -7980.807097] SLOW spr round 26 (radius: 15) [07:25:56 -7980.807097] SLOW spr round 27 (radius: 20) [07:28:26 -7980.807097] SLOW spr round 28 (radius: 25) [07:31:25 -7979.375554] SLOW spr round 29 (radius: 5) [07:32:57 -7979.375554] SLOW spr round 30 (radius: 10) [07:34:28 -7979.375554] SLOW spr round 31 (radius: 15) [07:36:12 -7979.375554] SLOW spr round 32 (radius: 20) [07:38:43 -7979.375554] SLOW spr round 33 (radius: 25) [07:38:50] [worker #1] ML tree search #18, logLikelihood: -8101.871676 [07:41:43 -7979.375554] Model parameter optimization (eps = 0.100000) [07:41:49] [worker #0] ML tree search #15, logLikelihood: -7979.201058 [07:41:49 -85259.584928] Initial branch length optimization [07:41:51 -71453.838083] Model parameter optimization (eps = 10.000000) [07:42:07 -71202.602885] AUTODETECT spr round 1 (radius: 5) [07:43:35 -31206.798973] AUTODETECT spr round 2 (radius: 10) [07:45:09 -19132.937691] AUTODETECT spr round 3 (radius: 15) [07:46:43 -13195.797131] AUTODETECT spr round 4 (radius: 20) [07:48:25 -11707.117586] AUTODETECT spr round 5 (radius: 25) [07:50:09 -10483.817155] SPR radius for FAST iterations: 25 (autodetect) [07:50:09 -10483.817155] Model parameter optimization (eps = 3.000000) [07:50:23 -10469.945685] FAST spr round 1 (radius: 25) [07:51:49 -8158.401748] FAST spr round 2 (radius: 25) [07:53:04 -8015.309867] FAST spr round 3 (radius: 25) [07:54:17 -7992.009840] FAST spr round 4 (radius: 25) [07:55:27 -7991.858508] FAST spr round 5 (radius: 25) [07:56:37 -7990.359597] FAST spr round 6 (radius: 25) [07:57:47 -7990.359597] Model parameter optimization (eps = 1.000000) [07:57:58 -7988.965002] SLOW spr round 1 (radius: 5) [07:59:13 -7987.767573] SLOW spr round 2 (radius: 5) [08:00:29 -7987.766262] SLOW spr round 3 (radius: 10) [08:01:52 -7985.342291] SLOW spr round 4 (radius: 5) [08:03:18 -7983.071595] SLOW spr round 5 (radius: 5) [08:04:36 -7983.012832] SLOW spr round 6 (radius: 10) [08:05:58 -7981.937540] SLOW spr round 7 (radius: 5) [08:07:23 -7981.937489] SLOW spr round 8 (radius: 10) [08:08:47 -7981.937416] SLOW spr round 9 (radius: 15) [08:10:30 -7981.937376] SLOW spr round 10 (radius: 20) [08:12:55 -7981.937376] SLOW spr round 11 (radius: 25) [08:15:47 -7981.525422] SLOW spr round 12 (radius: 5) [08:17:21 -7978.998265] SLOW spr round 13 (radius: 5) [08:18:45 -7978.998229] SLOW spr round 14 (radius: 10) [08:20:08 -7978.998202] SLOW spr round 15 (radius: 15) [08:21:50 -7978.998195] SLOW spr round 16 (radius: 20) [08:24:12 -7978.998193] SLOW spr round 17 (radius: 25) [08:27:01 -7978.998193] Model parameter optimization (eps = 0.100000) [08:27:08] [worker #0] ML tree search #17, logLikelihood: -7978.889454 [08:27:08 -85802.786721] Initial branch length optimization [08:27:10 -72320.250522] Model parameter optimization (eps = 10.000000) [08:27:26 -72090.393403] AUTODETECT spr round 1 (radius: 5) [08:28:55 -28455.054074] AUTODETECT spr round 2 (radius: 10) [08:30:21 -18160.575345] AUTODETECT spr round 3 (radius: 15) [08:31:52 -15052.981814] AUTODETECT spr round 4 (radius: 20) [08:33:32 -12500.484720] AUTODETECT spr round 5 (radius: 25) [08:35:12 -11533.302063] SPR radius for FAST iterations: 25 (autodetect) [08:35:12 -11533.302063] Model parameter optimization (eps = 3.000000) [08:35:26 -11524.778417] FAST spr round 1 (radius: 25) [08:36:50 -9201.878032] FAST spr round 2 (radius: 25) [08:38:07 -8597.343479] FAST spr round 3 (radius: 25) [08:39:22 -8461.574713] FAST spr round 4 (radius: 25) [08:40:34 -8453.269764] FAST spr round 5 (radius: 25) [08:41:44 -8453.268149] Model parameter optimization (eps = 1.000000) [08:41:49 -8452.496175] SLOW spr round 1 (radius: 5) [08:43:07 -8451.867267] SLOW spr round 2 (radius: 5) [08:44:23 -8451.618452] SLOW spr round 3 (radius: 5) [08:45:38 -8451.618445] SLOW spr round 4 (radius: 10) [08:46:58 -8439.718609] SLOW spr round 5 (radius: 5) [08:48:26 -8435.121829] SLOW spr round 6 (radius: 5) [08:49:44 -8435.121667] SLOW spr round 7 (radius: 10) [08:51:05 -8435.121666] SLOW spr round 8 (radius: 15) [08:52:09] [worker #1] ML tree search #20, logLikelihood: -8019.490495 [08:52:56 -8246.420273] SLOW spr round 9 (radius: 5) [08:54:28 -8237.954899] SLOW spr round 10 (radius: 5) [08:55:50 -8235.838285] SLOW spr round 11 (radius: 5) [08:57:08 -8235.837296] SLOW spr round 12 (radius: 10) [08:58:28 -8224.670196] SLOW spr round 13 (radius: 5) [08:59:53 -8221.732485] SLOW spr round 14 (radius: 5) [09:01:09 -8221.732482] SLOW spr round 15 (radius: 10) [09:02:29 -8221.475296] SLOW spr round 16 (radius: 5) [09:03:53 -8221.475292] SLOW spr round 17 (radius: 10) [09:05:13 -8221.475292] SLOW spr round 18 (radius: 15) [09:07:00 -8221.475267] SLOW spr round 19 (radius: 20) [09:09:19 -8221.475266] SLOW spr round 20 (radius: 25) [09:11:48 -8221.475266] Model parameter optimization (eps = 0.100000) [09:11:56] [worker #0] ML tree search #19, logLikelihood: -8220.897981 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.375279,0.269308) (0.282881,0.571366) (0.232115,1.444330) (0.109725,3.664198) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -7975.853787 AIC score: 19957.707574 / AICc score: 8047981.707574 / BIC score: 24778.366227 Free parameters (model + branch lengths): 2003 WARNING: Number of free parameters (K=2003) is larger than alignment size (n=82). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C009/3_mltree/Q9C009.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C009/3_mltree/Q9C009.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C009/3_mltree/Q9C009.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9C009/3_mltree/Q9C009.raxml.log Analysis started: 30-Jun-2021 19:50:40 / finished: 01-Jul-2021 05:02:36 Elapsed time: 33116.659 seconds Consumed energy: 2531.974 Wh (= 13 km in an electric car, or 63 km with an e-scooter!)