RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 14:52:19 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9BZR6/2_msa/Q9BZR6_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9BZR6/3_mltree/Q9BZR6.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9BZR6/4_raxmlng_ancestral/Q9BZR6 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622634739 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9BZR6/2_msa/Q9BZR6_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 473 sites WARNING: Sequences tr_F1NRZ3_F1NRZ3_CHICK_9031 and tr_G1NR73_G1NR73_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_G1NRN9_G1NRN9_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_H0ZIQ5_H0ZIQ5_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_U3KIW8_U3KIW8_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_R0JMB5_R0JMB5_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_A0A091F3W1_A0A091F3W1_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_A0A091VTC8_A0A091VTC8_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_A0A087QYI0_A0A087QYI0_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_A0A2I0MPS2_A0A2I0MPS2_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_A0A1V4KG52_A0A1V4KG52_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_A0A218UFL5_A0A218UFL5_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_A0A226N2K8_A0A226N2K8_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NTY3_F1NTY3_CHICK_9031 and tr_A0A226PR82_A0A226PR82_COLVI_9014 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and sp_P0CC10_LRC4B_RAT_10116 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A1U7RAS4_A0A1U7RAS4_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_D3ZXT1_D3ZXT1_RAT_10116 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_A0A1U8CES9_A0A1U8CES9_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_G1TE00_G1TE00_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_E2REC5_E2REC5_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_F6YUN2_F6YUN2_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_H0WIA0_H0WIA0_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_F1SHH6_F1SHH6_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_D2HRR2_D2HRR2_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_M3WQ26_M3WQ26_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A2U3W956_A0A2U3W956_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A2U3XA41_A0A2U3XA41_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A2Y9JR28_A0A2Y9JR28_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I2ZDA6_A0A2I2ZDA6_GORGO_9595 and tr_A0A2I3RBH3_A0A2I3RBH3_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_A0A2J8WFS6_A0A2J8WFS6_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_A0A2J8LHU0_A0A2J8LHU0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and sp_Q9HCJ2_LRC4C_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_F6T8E0_F6T8E0_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_G7PQD6_G7PQD6_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_A0A096MRD0_A0A096MRD0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_A0A0D9SCY3_A0A0D9SCY3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_A0A2K5L2M8_A0A2K5L2M8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_A0A2K6AXG9_A0A2K6AXG9_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_A0A2K5XNX9_A0A2K5XNX9_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QV61_G3QV61_GORGO_9595 and tr_A0A2R8Z8N1_A0A2R8Z8N1_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8R6X4_A0A2J8R6X4_PONAB_9601 and sp_O75325_LRRN2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2J8R6X4_A0A2J8R6X4_PONAB_9601 and tr_A0A1D5Q9G3_A0A1D5Q9G3_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2J8R6X4_A0A2J8R6X4_PONAB_9601 and tr_A0A096MPV3_A0A096MPV3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2J8R6X4_A0A2J8R6X4_PONAB_9601 and tr_A0A0D9SA49_A0A0D9SA49_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2J8R6X4_A0A2J8R6X4_PONAB_9601 and tr_A0A2K5KRU5_A0A2K5KRU5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2J8R6X4_A0A2J8R6X4_PONAB_9601 and tr_A0A2K6AMC6_A0A2K6AMC6_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2J8R6X4_A0A2J8R6X4_PONAB_9601 and tr_A0A2K5XCP4_A0A2K5XCP4_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2J8R6X4_A0A2J8R6X4_PONAB_9601 and tr_A0A2R8ZRQ5_A0A2R8ZRQ5_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2NDU7_H2NDU7_PONAB_9601 and tr_K7D663_K7D663_PANTR_9598 are exactly identical! WARNING: Sequences tr_E2RH90_E2RH90_CANLF_9615 and tr_D2GWR2_D2GWR2_AILME_9646 are exactly identical! WARNING: Sequences tr_E2RH90_E2RH90_CANLF_9615 and tr_A0A2U3YUV5_A0A2U3YUV5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_E2RH90_E2RH90_CANLF_9615 and tr_A0A384DAI9_A0A384DAI9_URSMA_29073 are exactly identical! WARNING: Sequences tr_H2QGY2_H2QGY2_PANTR_9598 and sp_Q9NT99_LRC4B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QGY2_H2QGY2_PANTR_9598 and tr_A0A2R8ZF23_A0A2R8ZF23_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QVB4_H2QVB4_PANTR_9598 and tr_A0A2R9A6Z7_A0A2R9A6Z7_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7BVS9_F7BVS9_MONDO_13616 and tr_G3WUJ3_G3WUJ3_SARHA_9305 are exactly identical! WARNING: Sequences tr_W5PLP9_W5PLP9_SHEEP_9940 and tr_F1MXH5_F1MXH5_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M4AYQ2_M4AYQ2_XIPMA_8083 and tr_A0A087YRR4_A0A087YRR4_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A158NJP2_A0A158NJP2_ATTCE_12957 and tr_A0A195BCJ9_A0A195BCJ9_9HYME_520822 are exactly identical! WARNING: Sequences tr_H0XRH7_H0XRH7_OTOGA_30611 and tr_A0A286ZY04_A0A286ZY04_PIG_9823 are exactly identical! WARNING: Sequences tr_H0VW94_H0VW94_CAVPO_10141 and tr_A0A091DAP7_A0A091DAP7_FUKDA_885580 are exactly identical! WARNING: Sequences tr_F6Q3P7_F6Q3P7_MACMU_9544 and tr_A0A0D9SCQ8_A0A0D9SCQ8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6QG32_F6QG32_MACMU_9544 and tr_A0A2K6AB32_A0A2K6AB32_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6WTX8_F6WTX8_MACMU_9544 and tr_A0A2K6AP53_A0A2K6AP53_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7H0A3_F7H0A3_MACMU_9544 and tr_A0A0A0MVU1_A0A0A0MVU1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7H0A3_F7H0A3_MACMU_9544 and tr_A0A2K5KY06_A0A2K5KY06_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7H0A3_F7H0A3_MACMU_9544 and tr_A0A2K6BPY9_A0A2K6BPY9_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7H0A3_F7H0A3_MACMU_9544 and tr_A0A2K5XDC3_A0A2K5XDC3_MANLE_9568 are exactly identical! WARNING: Sequences tr_I2CTX1_I2CTX1_MACMU_9544 and tr_A0A2K5N8G4_A0A2K5N8G4_CERAT_9531 are exactly identical! WARNING: Sequences tr_I2CTX1_I2CTX1_MACMU_9544 and tr_A0A2K6DGZ3_A0A2K6DGZ3_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0A0MP87_A0A0A0MP87_BOVIN_9913 and sp_F1MLX5_LGR4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3XBN4_M3XBN4_FELCA_9685 and tr_A0A2U3WLZ6_A0A2U3WLZ6_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A096MSC0_A0A096MSC0_PAPAN_9555 and tr_A0A0D9SDW8_A0A0D9SDW8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096MSC0_A0A096MSC0_PAPAN_9555 and tr_A0A2K5N2Q5_A0A2K5N2Q5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3MG41_A0A2I3MG41_PAPAN_9555 and tr_A0A2K6A9G6_A0A2K6A9G6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A1S3KPH7_A0A1S3KPH7_SALSA_8030 and tr_A0A060YTF4_A0A060YTF4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MA54_A0A226MA54_CALSU_9009 and tr_A0A226MBI0_A0A226MBI0_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A226MWM1_A0A226MWM1_CALSU_9009 and tr_A0A226P1M0_A0A226P1M0_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2K5N576_A0A2K5N576_CERAT_9531 and tr_A0A2K6CU43_A0A2K6CU43_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2U3UZJ5_A0A2U3UZJ5_TURTR_9739 and tr_A0A2Y9NXF8_A0A2Y9NXF8_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3UZJ5_A0A2U3UZJ5_TURTR_9739 and tr_A0A383ZQ82_A0A383ZQ82_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4CDW8_A0A2U4CDW8_TURTR_9739 and tr_A0A2Y9PAM0_A0A2Y9PAM0_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4CF65_A0A2U4CF65_TURTR_9739 and tr_A0A2Y9P7K7_A0A2Y9P7K7_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2Y9Q043_A0A2Y9Q043_DELLE_9749 and tr_A0A2Y9Q441_A0A2Y9Q441_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 83 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9BZR6/4_raxmlng_ancestral/Q9BZR6.raxml.reduced.phy Alignment comprises 1 partitions and 473 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 473 Gaps: 27.17 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9BZR6/4_raxmlng_ancestral/Q9BZR6.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9BZR6/3_mltree/Q9BZR6.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 119 / 9520 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -177945.904947 [00:00:00 -177945.904947] Initial branch length optimization [00:00:01 -176161.957921] Model parameter optimization (eps = 0.100000) [00:00:42] Tree #1, final logLikelihood: -175103.148163 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.112813,0.296499) (0.097636,0.338418) (0.390873,0.973648) (0.398678,1.386925) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9BZR6/4_raxmlng_ancestral/Q9BZR6.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9BZR6/4_raxmlng_ancestral/Q9BZR6.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9BZR6/4_raxmlng_ancestral/Q9BZR6.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q9BZR6/4_raxmlng_ancestral/Q9BZR6.raxml.log Analysis started: 02-Jun-2021 14:52:19 / finished: 02-Jun-2021 14:53:06 Elapsed time: 46.822 seconds