RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 30-Jun-2021 23:48:38 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BZJ3/2_msa/Q9BZJ3_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BZJ3/3_mltree/Q9BZJ3 --seed 2 --threads 5 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BZJ3/2_msa/Q9BZJ3_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 260 sites

WARNING: Sequences tr_G3R1Y2_G3R1Y2_GORGO_9595 and tr_H2Q5Y1_H2Q5Y1_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3R1Y2_G3R1Y2_GORGO_9595 and tr_A0A2R9BBI1_A0A2R9BBI1_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F1Q464_F1Q464_CANLF_9615 and sp_P19236_TRYM_CANLF_9615 are exactly identical!
WARNING: Sequences tr_A0A2I3S5F8_A0A2I3S5F8_PANTR_9598 and tr_A0A2R8ZNJ0_A0A2R8ZNJ0_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I3SRK3_A0A2I3SRK3_PANTR_9598 and tr_A0A2R8ZAY6_A0A2R8ZAY6_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I3TRF4_A0A2I3TRF4_PANTR_9598 and tr_A0A2R9BKC6_A0A2R9BKC6_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2PY34_H2PY34_PANTR_9598 and tr_A0A2R9AE93_A0A2R9AE93_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2QAE0_H2QAE0_PANTR_9598 and tr_A0A2R8ZPG1_A0A2R8ZPG1_PANPA_9597 are exactly identical!
WARNING: Sequences sp_P20231_TRYB2_HUMAN_9606 and sp_Q15661_TRYB1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3LGL3_A0A2I3LGL3_PAPAN_9555 and tr_A0A2K5Y1M8_A0A2K5Y1M8_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2D0SVS9_A0A2D0SVS9_ICTPU_7998 and tr_W5U639_W5U639_ICTPU_7998 are exactly identical!
WARNING: Duplicate sequences found: 11

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BZJ3/3_mltree/Q9BZJ3.raxml.reduced.phy

Alignment comprises 1 partitions and 260 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 260 / 260
Gaps: 8.57 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BZJ3/3_mltree/Q9BZJ3.raxml.rba

Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 260 / 20800
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -451746.167877] Initial branch length optimization
[00:00:07 -394236.125252] Model parameter optimization (eps = 10.000000)
[00:01:06 -393109.854692] AUTODETECT spr round 1 (radius: 5)
[00:05:08 -313146.433312] AUTODETECT spr round 2 (radius: 10)
[00:09:53 -236102.046643] AUTODETECT spr round 3 (radius: 15)
[00:15:20 -201806.740442] AUTODETECT spr round 4 (radius: 20)
[00:21:14 -194479.046678] AUTODETECT spr round 5 (radius: 25)
[00:29:00 -190782.358242] SPR radius for FAST iterations: 25 (autodetect)
[00:29:00 -190782.358242] Model parameter optimization (eps = 3.000000)
[00:29:31 -190724.953311] FAST spr round 1 (radius: 25)
[00:35:42 -171866.955710] FAST spr round 2 (radius: 25)
[00:39:50 -170991.301475] FAST spr round 3 (radius: 25)
[00:43:23 -170929.022104] FAST spr round 4 (radius: 25)
[00:46:28 -170918.933665] FAST spr round 5 (radius: 25)
[00:49:21 -170915.298601] FAST spr round 6 (radius: 25)
[00:52:02 -170915.298191] Model parameter optimization (eps = 1.000000)
[00:52:14 -170914.312365] SLOW spr round 1 (radius: 5)
[00:56:18 -170878.760096] SLOW spr round 2 (radius: 5)
[01:00:10 -170865.809457] SLOW spr round 3 (radius: 5)
[01:03:52 -170860.864136] SLOW spr round 4 (radius: 5)
[01:07:27 -170859.050886] SLOW spr round 5 (radius: 5)
[01:10:59 -170858.646979] SLOW spr round 6 (radius: 5)
[01:14:31 -170858.646941] SLOW spr round 7 (radius: 10)
[01:18:17 -170855.446408] SLOW spr round 8 (radius: 5)
[01:22:48 -170855.446214] SLOW spr round 9 (radius: 10)
[01:27:07 -170854.914044] SLOW spr round 10 (radius: 5)
[01:31:32 -170852.231075] SLOW spr round 11 (radius: 5)
[01:35:27 -170852.231069] SLOW spr round 12 (radius: 10)
[01:39:19 -170852.231069] SLOW spr round 13 (radius: 15)
[01:47:03 -170852.231069] SLOW spr round 14 (radius: 20)
[01:57:49] [worker #4] ML tree search #5, logLikelihood: -170877.703634
[01:59:23 -170852.231069] SLOW spr round 15 (radius: 25)
[02:13:43 -170852.231069] Model parameter optimization (eps = 0.100000)

[02:13:53] [worker #0] ML tree search #1, logLikelihood: -170852.145494

[02:13:53 -451610.520420] Initial branch length optimization
[02:13:58 -393723.432359] Model parameter optimization (eps = 10.000000)
[02:14:59 -392607.510281] AUTODETECT spr round 1 (radius: 5)
[02:17:28] [worker #2] ML tree search #3, logLikelihood: -170841.180642
[02:19:00 -315860.805783] AUTODETECT spr round 2 (radius: 10)
[02:23:39] [worker #3] ML tree search #4, logLikelihood: -170817.849178
[02:23:39 -240024.635279] AUTODETECT spr round 3 (radius: 15)
[02:29:09 -200877.621761] AUTODETECT spr round 4 (radius: 20)
[02:30:18] [worker #1] ML tree search #2, logLikelihood: -170821.807922
[02:36:56 -192078.259820] AUTODETECT spr round 5 (radius: 25)
[02:46:49 -191116.721469] SPR radius for FAST iterations: 25 (autodetect)
[02:46:49 -191116.721469] Model parameter optimization (eps = 3.000000)
[02:47:20 -191065.118733] FAST spr round 1 (radius: 25)
[02:53:49 -171737.015169] FAST spr round 2 (radius: 25)
[02:58:03 -171090.716395] FAST spr round 3 (radius: 25)
[03:01:39 -170940.875266] FAST spr round 4 (radius: 25)
[03:04:40 -170925.721602] FAST spr round 5 (radius: 25)
[03:07:29 -170921.916974] FAST spr round 6 (radius: 25)
[03:10:12 -170921.916950] Model parameter optimization (eps = 1.000000)
[03:10:31 -170917.583573] SLOW spr round 1 (radius: 5)
[03:14:44 -170856.409538] SLOW spr round 2 (radius: 5)
[03:18:35 -170844.542007] SLOW spr round 3 (radius: 5)
[03:22:12 -170843.157573] SLOW spr round 4 (radius: 5)
[03:25:46 -170843.157068] SLOW spr round 5 (radius: 10)
[03:29:30 -170842.646485] SLOW spr round 6 (radius: 5)
[03:34:07 -170841.933780] SLOW spr round 7 (radius: 5)
[03:38:08 -170838.388502] SLOW spr round 8 (radius: 5)
[03:41:53 -170838.388358] SLOW spr round 9 (radius: 10)
[03:45:40 -170838.067688] SLOW spr round 10 (radius: 5)
[03:50:16 -170835.366105] SLOW spr round 11 (radius: 5)
[03:54:15 -170835.365847] SLOW spr round 12 (radius: 10)
[03:58:09 -170835.274140] SLOW spr round 13 (radius: 15)
[04:05:56 -170835.274122] SLOW spr round 14 (radius: 20)
[04:13:07] [worker #2] ML tree search #8, logLikelihood: -170872.006831
[04:18:38 -170835.274122] SLOW spr round 15 (radius: 25)
[04:34:06 -170835.274122] Model parameter optimization (eps = 0.100000)

[04:34:32] [worker #0] ML tree search #6, logLikelihood: -170831.699674

[04:34:32 -453451.574111] Initial branch length optimization
[04:34:37 -395697.569316] Model parameter optimization (eps = 10.000000)
[04:35:36 -394542.608661] AUTODETECT spr round 1 (radius: 5)
[04:37:05] [worker #1] ML tree search #7, logLikelihood: -170848.697948
[04:37:17] [worker #3] ML tree search #9, logLikelihood: -170824.487019
[04:39:37 -314398.950111] AUTODETECT spr round 2 (radius: 10)
[04:39:44] [worker #4] ML tree search #10, logLikelihood: -170828.276050
[04:44:25 -229690.829676] AUTODETECT spr round 3 (radius: 15)
[04:49:49 -199694.013764] AUTODETECT spr round 4 (radius: 20)
[04:56:21 -192558.750161] AUTODETECT spr round 5 (radius: 25)
[05:05:21 -190949.721358] SPR radius for FAST iterations: 25 (autodetect)
[05:05:21 -190949.721358] Model parameter optimization (eps = 3.000000)
[05:05:50 -190903.480459] FAST spr round 1 (radius: 25)
[05:11:58 -171954.759099] FAST spr round 2 (radius: 25)
[05:16:10 -171006.493502] FAST spr round 3 (radius: 25)
[05:19:44 -170913.037031] FAST spr round 4 (radius: 25)
[05:22:49 -170893.582006] FAST spr round 5 (radius: 25)
[05:25:36 -170892.605691] FAST spr round 6 (radius: 25)
[05:28:20 -170891.732739] FAST spr round 7 (radius: 25)
[05:31:00 -170891.732719] Model parameter optimization (eps = 1.000000)
[05:31:14 -170889.728979] SLOW spr round 1 (radius: 5)
[05:35:22 -170852.244761] SLOW spr round 2 (radius: 5)
[05:39:05 -170849.092452] SLOW spr round 3 (radius: 5)
[05:42:41 -170849.090686] SLOW spr round 4 (radius: 10)
[05:46:28 -170847.709015] SLOW spr round 5 (radius: 5)
[05:51:05 -170846.492432] SLOW spr round 6 (radius: 5)
[05:55:06 -170846.492410] SLOW spr round 7 (radius: 10)
[05:59:01 -170845.304543] SLOW spr round 8 (radius: 5)
[06:03:36 -170843.036617] SLOW spr round 9 (radius: 5)
[06:07:37 -170843.036589] SLOW spr round 10 (radius: 10)
[06:09:49] [worker #2] ML tree search #13, logLikelihood: -170821.954390
[06:11:33 -170842.871556] SLOW spr round 11 (radius: 5)
[06:16:06 -170842.871530] SLOW spr round 12 (radius: 10)
[06:20:20 -170842.734013] SLOW spr round 13 (radius: 5)
[06:24:49 -170842.734004] SLOW spr round 14 (radius: 10)
[06:28:21] [worker #3] ML tree search #14, logLikelihood: -170834.598675
[06:29:01 -170842.734004] SLOW spr round 15 (radius: 15)
[06:36:40 -170842.734004] SLOW spr round 16 (radius: 20)
[06:37:18] [worker #1] ML tree search #12, logLikelihood: -170812.907488
[06:49:19 -170842.734004] SLOW spr round 17 (radius: 25)
[07:04:11 -170842.734004] Model parameter optimization (eps = 0.100000)

[07:04:25] [worker #0] ML tree search #11, logLikelihood: -170842.499315

[07:04:25 -451294.241037] Initial branch length optimization
[07:04:30 -394641.201656] Model parameter optimization (eps = 10.000000)
[07:05:05] [worker #4] ML tree search #15, logLikelihood: -170820.963988
[07:05:49 -393523.453470] AUTODETECT spr round 1 (radius: 5)
[07:09:53 -310054.902799] AUTODETECT spr round 2 (radius: 10)
[07:14:46 -234389.431470] AUTODETECT spr round 3 (radius: 15)
[07:20:02 -200806.917421] AUTODETECT spr round 4 (radius: 20)
[07:26:40 -191271.451822] AUTODETECT spr round 5 (radius: 25)
[07:34:44 -190082.086466] SPR radius for FAST iterations: 25 (autodetect)
[07:34:44 -190082.086466] Model parameter optimization (eps = 3.000000)
[07:35:18 -190025.722637] FAST spr round 1 (radius: 25)
[07:41:27 -171667.073748] FAST spr round 2 (radius: 25)
[07:45:39 -171012.921122] FAST spr round 3 (radius: 25)
[07:49:15 -170944.602739] FAST spr round 4 (radius: 25)
[07:52:12 -170931.302840] FAST spr round 5 (radius: 25)
[07:54:59 -170931.302690] Model parameter optimization (eps = 1.000000)
[07:55:11 -170930.796191] SLOW spr round 1 (radius: 5)
[07:59:24 -170889.225122] SLOW spr round 2 (radius: 5)
[08:03:27 -170865.525926] SLOW spr round 3 (radius: 5)
[08:07:24 -170847.393036] SLOW spr round 4 (radius: 5)
[08:09:33] [worker #2] ML tree search #18, logLikelihood: -170822.636342
[08:11:11 -170834.352687] SLOW spr round 5 (radius: 5)
[08:14:46 -170833.064168] SLOW spr round 6 (radius: 5)
[08:18:19 -170833.064017] SLOW spr round 7 (radius: 10)
[08:19:12] [worker #3] ML tree search #19, logLikelihood: -170842.043903
[08:22:08 -170832.542528] SLOW spr round 8 (radius: 5)
[08:26:40 -170832.542495] SLOW spr round 9 (radius: 10)
[08:30:59 -170829.343163] SLOW spr round 10 (radius: 5)
[08:35:26 -170829.022263] SLOW spr round 11 (radius: 5)
[08:39:22 -170829.022263] SLOW spr round 12 (radius: 10)
[08:43:16 -170829.022263] SLOW spr round 13 (radius: 15)
[08:50:49 -170829.022263] SLOW spr round 14 (radius: 20)
[08:52:41] [worker #1] ML tree search #17, logLikelihood: -170833.099306
[08:55:05] [worker #4] ML tree search #20, logLikelihood: -170833.685145
[09:03:03 -170829.022263] SLOW spr round 15 (radius: 25)
[09:17:20 -170829.022263] Model parameter optimization (eps = 0.100000)

[09:17:34] [worker #0] ML tree search #16, logLikelihood: -170828.327858


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.166670,0.274656) (0.222664,0.331000) (0.321838,1.111860) (0.288828,1.809664) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -170812.907488

AIC score: 345635.814976 / AICc score: 8389695.814976 / BIC score: 352774.981646
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=260).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BZJ3/3_mltree/Q9BZJ3.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BZJ3/3_mltree/Q9BZJ3.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BZJ3/3_mltree/Q9BZJ3.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BZJ3/3_mltree/Q9BZJ3.raxml.log

Analysis started: 30-Jun-2021 23:48:38 / finished: 01-Jul-2021 09:06:13

Elapsed time: 33454.919 seconds