RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 15-Jul-2021 03:57:40 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BZG8/2_msa/Q9BZG8_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BZG8/3_mltree/Q9BZG8 --seed 2 --threads 6 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (6 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BZG8/2_msa/Q9BZG8_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 367 sites

WARNING: Sequences tr_B6QGX5_B6QGX5_TALMQ_441960 and tr_A0A093V3Y7_A0A093V3Y7_TALMA_1077442 are exactly identical!
WARNING: Sequences tr_Q2LZ76_Q2LZ76_DROPS_46245 and tr_B4HAH3_B4HAH3_DROPE_7234 are exactly identical!
WARNING: Sequences tr_B8NHD2_B8NHD2_ASPFN_332952 and tr_Q2UF14_Q2UF14_ASPOR_510516 are exactly identical!
WARNING: Sequences tr_B8NHD2_B8NHD2_ASPFN_332952 and tr_A0A1S9E0V7_A0A1S9E0V7_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_A0A179URL8_A0A179URL8_BLAGS_559298 and tr_C5GEF9_C5GEF9_AJEDR_559297 are exactly identical!
WARNING: Sequences tr_H2QBU9_H2QBU9_PANTR_9598 and tr_A0A2R9AWE5_A0A2R9AWE5_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F9F349_F9F349_FUSOF_660025 and tr_N4TUZ4_N4TUZ4_FUSC1_1229664 are exactly identical!
WARNING: Sequences tr_F9F349_F9F349_FUSOF_660025 and tr_X0CXU0_X0CXU0_FUSOX_1089458 are exactly identical!
WARNING: Sequences tr_F9F349_F9F349_FUSOF_660025 and tr_A0A2H3T3E0_A0A2H3T3E0_FUSOX_5507 are exactly identical!
WARNING: Sequences tr_F9F349_F9F349_FUSOF_660025 and tr_A0A2H3I1F5_A0A2H3I1F5_FUSOX_327505 are exactly identical!
WARNING: Sequences tr_A0A0B2XJZ2_A0A0B2XJZ2_METRA_655844 and tr_A0A0B4IKB8_A0A0B4IKB8_METMF_1276143 are exactly identical!
WARNING: Sequences tr_A0A0B2XJZ2_A0A0B2XJZ2_METRA_655844 and tr_A0A0D9P624_A0A0D9P624_METAN_1291518 are exactly identical!
WARNING: Sequences tr_J5JJG5_J5JJG5_BEAB2_655819 and tr_A0A162M8G1_A0A162M8G1_9HYPO_1081107 are exactly identical!
WARNING: Sequences tr_A2QCT5_A2QCT5_ASPNC_425011 and tr_G3Y2V7_G3Y2V7_ASPNA_380704 are exactly identical!
WARNING: Sequences tr_A2QCT5_A2QCT5_ASPNC_425011 and tr_A0A319ARH3_A0A319ARH3_9EURO_1450533 are exactly identical!
WARNING: Sequences tr_G7X582_G7X582_ASPKW_1033177 and tr_A0A146FKP0_A0A146FKP0_9EURO_1069201 are exactly identical!
WARNING: Sequences tr_F9X1C8_F9X1C8_ZYMTI_336722 and tr_A0A1X7RGE1_A0A1X7RGE1_ZYMTR_1276538 are exactly identical!
WARNING: Sequences tr_G2YDC6_G2YDC6_BOTF4_999810 and tr_M7TTR9_M7TTR9_BOTF1_1290391 are exactly identical!
WARNING: Sequences tr_C4VAZ5_C4VAZ5_NOSCE_578460 and tr_A0A0F9YSE6_A0A0F9YSE6_9MICR_40302 are exactly identical!
WARNING: Sequences tr_S0DK67_S0DK67_GIBF5_1279085 and tr_A0A365MUJ2_A0A365MUJ2_GIBIN_948311 are exactly identical!
WARNING: Sequences tr_W2QZ03_W2QZ03_PHYPN_761204 and tr_W2KDT9_W2KDT9_PHYPR_4792 are exactly identical!
WARNING: Sequences tr_A0A015MR78_A0A015MR78_9GLOM_1432141 and tr_U9UB77_U9UB77_RHIID_747089 are exactly identical!
WARNING: Sequences tr_A0A044UUI1_A0A044UUI1_ONCVO_6282 and tr_A0A182DZ35_A0A182DZ35_ONCOC_42157 are exactly identical!
WARNING: Sequences tr_A0A094EIV4_A0A094EIV4_9PEZI_1420912 and tr_A0A1B8GM32_A0A1B8GM32_9PEZI_342668 are exactly identical!
WARNING: Sequences tr_V4V1R7_V4V1R7_9ROSI_85681 and tr_A0A2H5PHB2_A0A2H5PHB2_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A0F0I1K5_A0A0F0I1K5_ASPPU_1403190 and tr_A0A2G7FWB5_A0A2G7FWB5_9EURO_656916 are exactly identical!
WARNING: Sequences tr_A0A0F9XM18_A0A0F9XM18_TRIHA_5544 and tr_A0A2T4AQS0_A0A2T4AQS0_TRIHA_983964 are exactly identical!
WARNING: Sequences tr_A0A0F8XSQ5_A0A0F8XSQ5_9EURO_308745 and tr_A0A2T5LT93_A0A2T5LT93_9EURO_1392256 are exactly identical!
WARNING: Sequences tr_A0A0G4PJ64_A0A0G4PJ64_PENCA_1429867 and tr_A0A124GS28_A0A124GS28_9EURO_48697 are exactly identical!
WARNING: Sequences tr_A0A0G4PJ64_A0A0G4PJ64_PENCA_1429867 and tr_A0A1V6NBT7_A0A1V6NBT7_9EURO_60169 are exactly identical!
WARNING: Sequences tr_A0A194WC89_A0A194WC89_9PEZI_105487 and tr_A0A194VC05_A0A194VC05_9PEZI_694573 are exactly identical!
WARNING: Sequences tr_A0A1R1XHT6_A0A1R1XHT6_9FUNG_133412 and tr_A0A1R1XL06_A0A1R1XL06_9FUNG_133412 are exactly identical!
WARNING: Sequences tr_A0A1R3RYI7_A0A1R3RYI7_ASPC5_602072 and tr_A0A317WVT7_A0A317WVT7_9EURO_1450535 are exactly identical!
WARNING: Sequences tr_A0A2G5IAB3_A0A2G5IAB3_CERBT_122368 and tr_A0A2S6C9H7_A0A2S6C9H7_9PEZI_357750 are exactly identical!
WARNING: Duplicate sequences found: 34

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BZG8/3_mltree/Q9BZG8.raxml.reduced.phy

Alignment comprises 1 partitions and 367 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 367 / 367
Gaps: 6.12 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BZG8/3_mltree/Q9BZG8.raxml.rba

Parallelization scheme autoconfig: 6 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 367 / 29360
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -470486.984132] Initial branch length optimization
[00:00:09 -393071.355772] Model parameter optimization (eps = 10.000000)
[00:01:15 -391353.280196] AUTODETECT spr round 1 (radius: 5)
[00:06:03 -309324.619802] AUTODETECT spr round 2 (radius: 10)
[00:11:41 -243776.896771] AUTODETECT spr round 3 (radius: 15)
[00:18:47 -203192.889008] AUTODETECT spr round 4 (radius: 20)
[00:27:00 -181846.185339] AUTODETECT spr round 5 (radius: 25)
[00:36:21 -179848.705764] SPR radius for FAST iterations: 25 (autodetect)
[00:36:21 -179848.705764] Model parameter optimization (eps = 3.000000)
[00:37:01 -179750.292120] FAST spr round 1 (radius: 25)
[00:44:29 -159649.314773] FAST spr round 2 (radius: 25)
[00:49:07 -159064.240561] FAST spr round 3 (radius: 25)
[00:53:03 -159008.656810] FAST spr round 4 (radius: 25)
[00:56:24 -158996.815979] FAST spr round 5 (radius: 25)
[00:59:25 -158996.815703] Model parameter optimization (eps = 1.000000)
[00:59:58 -158990.489994] SLOW spr round 1 (radius: 5)
[01:04:32 -158960.273072] SLOW spr round 2 (radius: 5)
[01:08:57 -158941.872204] SLOW spr round 3 (radius: 5)
[01:13:01 -158941.691288] SLOW spr round 4 (radius: 5)
[01:17:02 -158941.690967] SLOW spr round 5 (radius: 10)
[01:21:16 -158941.546709] SLOW spr round 6 (radius: 5)
[01:26:35 -158941.288059] SLOW spr round 7 (radius: 5)
[01:31:10 -158941.288037] SLOW spr round 8 (radius: 10)
[01:35:34 -158941.288029] SLOW spr round 9 (radius: 15)
[01:43:14 -158940.683721] SLOW spr round 10 (radius: 5)
[01:48:47 -158939.862797] SLOW spr round 11 (radius: 5)
[01:53:34 -158939.197441] SLOW spr round 12 (radius: 5)
[01:57:52 -158939.197424] SLOW spr round 13 (radius: 10)
[02:02:10 -158938.851099] SLOW spr round 14 (radius: 5)
[02:06:43] [worker #5] ML tree search #6, logLikelihood: -158974.795428
[02:07:26 -158938.851054] SLOW spr round 15 (radius: 10)
[02:12:17 -158938.851051] SLOW spr round 16 (radius: 15)
[02:14:56] [worker #2] ML tree search #3, logLikelihood: -158952.880459
[02:19:32 -158938.851047] SLOW spr round 17 (radius: 20)
[02:31:54 -158938.851044] SLOW spr round 18 (radius: 25)
[02:48:01 -158938.851041] Model parameter optimization (eps = 0.100000)

[02:48:22] [worker #0] ML tree search #1, logLikelihood: -158938.468360

[02:48:23 -469699.551784] Initial branch length optimization
[02:48:31 -394161.385241] Model parameter optimization (eps = 10.000000)
[02:49:43 -392439.498547] AUTODETECT spr round 1 (radius: 5)
[02:54:34 -308353.703828] AUTODETECT spr round 2 (radius: 10)
[02:56:34] [worker #4] ML tree search #5, logLikelihood: -158957.627109
[03:00:41 -243446.778487] AUTODETECT spr round 3 (radius: 15)
[03:06:59 -204836.808942] AUTODETECT spr round 4 (radius: 20)
[03:08:41] [worker #3] ML tree search #4, logLikelihood: -158939.572764
[03:11:05] [worker #1] ML tree search #2, logLikelihood: -158927.315601
[03:15:08 -183962.671604] AUTODETECT spr round 5 (radius: 25)
[03:25:04 -179980.493776] SPR radius for FAST iterations: 25 (autodetect)
[03:25:04 -179980.493776] Model parameter optimization (eps = 3.000000)
[03:25:40 -179913.923411] FAST spr round 1 (radius: 25)
[03:32:55 -160492.380578] FAST spr round 2 (radius: 25)
[03:37:39 -159479.240180] FAST spr round 3 (radius: 25)
[03:41:43 -159060.166231] FAST spr round 4 (radius: 25)
[03:45:06 -159048.912605] FAST spr round 5 (radius: 25)
[03:48:11 -159048.911579] Model parameter optimization (eps = 1.000000)
[03:48:39 -159044.089515] SLOW spr round 1 (radius: 5)
[03:53:19 -158993.509357] SLOW spr round 2 (radius: 5)
[03:57:40 -158979.279918] SLOW spr round 3 (radius: 5)
[04:01:51 -158979.263891] SLOW spr round 4 (radius: 10)
[04:06:06 -158979.260764] SLOW spr round 5 (radius: 15)
[04:13:51 -158979.259816] SLOW spr round 6 (radius: 20)
[04:18:51] [worker #5] ML tree search #12, logLikelihood: -158979.811527
[04:24:23 -158979.259531] SLOW spr round 7 (radius: 25)
[04:34:28] [worker #2] ML tree search #9, logLikelihood: -158938.168002
[04:38:13 -158979.259444] Model parameter optimization (eps = 0.100000)

[04:38:31] [worker #0] ML tree search #7, logLikelihood: -158979.075243

[04:38:31 -466874.189908] Initial branch length optimization
[04:38:40 -392316.000656] Model parameter optimization (eps = 10.000000)
[04:39:46 -390834.311840] AUTODETECT spr round 1 (radius: 5)
[04:44:40 -306152.882911] AUTODETECT spr round 2 (radius: 10)
[04:50:43 -232507.364931] AUTODETECT spr round 3 (radius: 15)
[04:57:22 -199174.758327] AUTODETECT spr round 4 (radius: 20)
[05:05:20 -188977.494364] AUTODETECT spr round 5 (radius: 25)
[05:15:06 -183880.995693] SPR radius for FAST iterations: 25 (autodetect)
[05:15:06 -183880.995693] Model parameter optimization (eps = 3.000000)
[05:15:54 -183838.730244] FAST spr round 1 (radius: 25)
[05:23:47 -160013.520296] FAST spr round 2 (radius: 25)
[05:28:39 -159109.011863] FAST spr round 3 (radius: 25)
[05:28:44] [worker #3] ML tree search #10, logLikelihood: -158972.468418
[05:32:49 -159027.393149] FAST spr round 4 (radius: 25)
[05:34:24] [worker #1] ML tree search #8, logLikelihood: -158957.335265
[05:36:32 -158998.413699] FAST spr round 5 (radius: 25)
[05:39:40 -158994.496763] FAST spr round 6 (radius: 25)
[05:42:40 -158994.496384] Model parameter optimization (eps = 1.000000)
[05:43:02 -158988.771650] SLOW spr round 1 (radius: 5)
[05:47:47 -158956.171471] SLOW spr round 2 (radius: 5)
[05:52:15 -158951.953756] SLOW spr round 3 (radius: 5)
[05:56:25 -158951.746837] SLOW spr round 4 (radius: 5)
[06:00:32 -158951.746822] SLOW spr round 5 (radius: 10)
[06:04:49 -158950.496958] SLOW spr round 6 (radius: 5)
[06:04:49] [worker #4] ML tree search #11, logLikelihood: -158955.504418
[06:10:17 -158948.037692] SLOW spr round 7 (radius: 5)
[06:15:03 -158947.577975] SLOW spr round 8 (radius: 5)
[06:19:24 -158947.577954] SLOW spr round 9 (radius: 10)
[06:23:45 -158947.241278] SLOW spr round 10 (radius: 5)
[06:29:06 -158947.241221] SLOW spr round 11 (radius: 10)
[06:34:01 -158947.241206] SLOW spr round 12 (radius: 15)
[06:37:06] [worker #5] ML tree search #18, logLikelihood: -158947.101629
[06:41:23 -158947.241192] SLOW spr round 13 (radius: 20)
[06:54:14 -158947.241177] SLOW spr round 14 (radius: 25)
[07:11:28 -158947.241163] Model parameter optimization (eps = 0.100000)

[07:11:45] [worker #0] ML tree search #13, logLikelihood: -158947.092411

[07:11:45 -467166.518002] Initial branch length optimization
[07:11:55 -393140.052945] Model parameter optimization (eps = 10.000000)
[07:13:09 -391594.151183] AUTODETECT spr round 1 (radius: 5)
[07:18:11 -304382.249589] AUTODETECT spr round 2 (radius: 10)
[07:24:09 -245114.728603] AUTODETECT spr round 3 (radius: 15)
[07:31:14 -205576.139116] AUTODETECT spr round 4 (radius: 20)
[07:39:12 -187480.345581] AUTODETECT spr round 5 (radius: 25)
[07:44:16] [worker #2] ML tree search #15, logLikelihood: -158948.745385
[07:49:04 -185987.006024] SPR radius for FAST iterations: 25 (autodetect)
[07:49:04 -185987.006024] Model parameter optimization (eps = 3.000000)
[07:49:43 -185918.495530] FAST spr round 1 (radius: 25)
[07:57:36 -160249.822655] FAST spr round 2 (radius: 25)
[08:02:39 -159055.703963] FAST spr round 3 (radius: 25)
[08:06:31 -158987.175343] FAST spr round 4 (radius: 25)
[08:09:52 -158975.996775] FAST spr round 5 (radius: 25)
[08:12:55 -158975.993555] Model parameter optimization (eps = 1.000000)
[08:13:26 -158970.817506] SLOW spr round 1 (radius: 5)
[08:18:15 -158932.092061] SLOW spr round 2 (radius: 5)
[08:22:44 -158926.660917] SLOW spr round 3 (radius: 5)
[08:26:51 -158926.660680] SLOW spr round 4 (radius: 10)
[08:27:18] [worker #1] ML tree search #14, logLikelihood: -158945.352117
[08:31:09 -158924.728784] SLOW spr round 5 (radius: 5)
[08:36:32 -158924.728731] SLOW spr round 6 (radius: 10)
[08:41:25 -158924.718469] SLOW spr round 7 (radius: 15)
[08:48:47 -158924.293245] SLOW spr round 8 (radius: 5)
[08:49:12] [worker #3] ML tree search #16, logLikelihood: -158954.293033
[08:54:26 -158924.288251] SLOW spr round 9 (radius: 10)
[08:59:37 -158924.285706] SLOW spr round 10 (radius: 15)
[09:06:50 -158924.284279] SLOW spr round 11 (radius: 20)
[09:09:46] [worker #4] ML tree search #17, logLikelihood: -158944.879946
[09:18:38 -158924.283475] SLOW spr round 12 (radius: 25)
[09:34:58 -158924.283020] Model parameter optimization (eps = 0.100000)

[09:35:11] [worker #0] ML tree search #19, logLikelihood: -158924.178964

[11:03:24] [worker #1] ML tree search #20, logLikelihood: -158938.637331

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.302834,0.377514) (0.334383,0.531163) (0.232022,1.313515) (0.130761,3.084245) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -158924.178964

AIC score: 321858.357928 / AICc score: 8365918.357928 / BIC score: 329688.608433
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=367).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 76 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BZG8/3_mltree/Q9BZG8.raxml.bestTreeCollapsed
Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BZG8/3_mltree/Q9BZG8.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BZG8/3_mltree/Q9BZG8.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BZG8/3_mltree/Q9BZG8.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BZG8/3_mltree/Q9BZG8.raxml.log

Analysis started: 15-Jul-2021 03:57:40 / finished: 15-Jul-2021 15:01:05

Elapsed time: 39804.267 seconds