RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 03-Jun-2021 02:19:52 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BZ23/2_msa/Q9BZ23_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BZ23/3_mltree/Q9BZ23.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BZ23/4_raxmlng_ancestral/Q9BZ23 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622675992 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BZ23/2_msa/Q9BZ23_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 570 sites WARNING: Sequences sp_Q8R2W9_PANK3_MOUSE_10090 and tr_A0A1U7Q7P0_A0A1U7Q7P0_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YNN2_M3YNN2_MUSPF_9669 and tr_A0A2U3VC19_A0A2U3VC19_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YNN2_M3YNN2_MUSPF_9669 and tr_A0A384C6V2_A0A384C6V2_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1QYB8_G1QYB8_NOMLE_61853 and tr_H2PHB3_H2PHB3_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QYB8_G1QYB8_NOMLE_61853 and tr_G1T2E0_G1T2E0_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1QYB8_G1QYB8_NOMLE_61853 and sp_Q9H999_PANK3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QYB8_G1QYB8_NOMLE_61853 and tr_A0A096NAL7_A0A096NAL7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QYB8_G1QYB8_NOMLE_61853 and tr_A0A0D9RCP7_A0A0D9RCP7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QYB8_G1QYB8_NOMLE_61853 and tr_A0A1U7TJ71_A0A1U7TJ71_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1QYB8_G1QYB8_NOMLE_61853 and tr_A0A2K5N0F8_A0A2K5N0F8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QYB8_G1QYB8_NOMLE_61853 and tr_A0A2K6DD44_A0A2K6DD44_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QYB8_G1QYB8_NOMLE_61853 and tr_A0A2K5ZQZ9_A0A2K5ZQZ9_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QYB8_G1QYB8_NOMLE_61853 and tr_A0A2R9BKU5_A0A2R9BKU5_PANPA_9597 are exactly identical! WARNING: Sequences tr_B6QSQ5_B6QSQ5_TALMQ_441960 and tr_A0A093VSP1_A0A093VSP1_TALMA_1077442 are exactly identical! WARNING: Sequences tr_G3QFR3_G3QFR3_GORGO_9595 and tr_A0A2R9CIA1_A0A2R9CIA1_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2N9E6_H2N9E6_PONAB_9601 and tr_F7GTZ5_F7GTZ5_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2N9E6_H2N9E6_PONAB_9601 and tr_F6YM80_F6YM80_CALJA_9483 are exactly identical! WARNING: Sequences tr_H2N9E6_H2N9E6_PONAB_9601 and tr_A0A0D9S8V4_A0A0D9S8V4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2N9E6_H2N9E6_PONAB_9601 and tr_A0A2K5MUL8_A0A2K5MUL8_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2N9E6_H2N9E6_PONAB_9601 and tr_A0A2K5YKM0_A0A2K5YKM0_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3TEZ4_A0A2I3TEZ4_PANTR_9598 and sp_Q9NVE7_PANK4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_W5NXK3_W5NXK3_SHEEP_9940 and sp_Q08DA5_PANK3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_E9D658_E9D658_COCPS_443226 and tr_A0A0J6XXN6_A0A0J6XXN6_COCIT_404692 are exactly identical! WARNING: Sequences tr_A0A3B5QMQ4_A0A3B5QMQ4_XIPMA_8083 and tr_A0A087YH08_A0A087YH08_POEFO_48698 are exactly identical! WARNING: Sequences tr_Q2U4U1_Q2U4U1_ASPOR_510516 and tr_A0A1S9DI53_A0A1S9DI53_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_A0A0E0HMJ3_A0A0E0HMJ3_ORYNI_4536 and tr_I1Q0G7_I1Q0G7_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0HMJ3_A0A0E0HMJ3_ORYNI_4536 and tr_A0A0D3GE04_A0A0D3GE04_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0HMJ3_A0A0E0HMJ3_ORYNI_4536 and tr_A0A0E0A6J1_A0A0E0A6J1_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0IMT4_A0A0E0IMT4_ORYNI_4536 and tr_B8BDU9_B8BDU9_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0IMT4_A0A0E0IMT4_ORYNI_4536 and tr_I1QQP8_I1QQP8_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0IMT4_A0A0E0IMT4_ORYNI_4536 and tr_A0A0E0QUA7_A0A0E0QUA7_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0IMT4_A0A0E0IMT4_ORYNI_4536 and tr_A0A0E0B5Q6_A0A0E0B5Q6_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0IMT4_A0A0E0IMT4_ORYNI_4536 and sp_Q0J035_PANK2_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A2QF75_A2QF75_ASPNC_425011 and tr_G3Y2N3_G3Y2N3_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A2QF75_A2QF75_ASPNC_425011 and tr_A0A319B0E7_A0A319B0E7_9EURO_1450533 are exactly identical! WARNING: Sequences tr_G7XCJ5_G7XCJ5_ASPKW_1033177 and tr_A0A100IRL7_A0A100IRL7_ASPNG_5061 are exactly identical! WARNING: Sequences tr_G7XCJ5_G7XCJ5_ASPKW_1033177 and tr_A0A146FDA0_A0A146FDA0_9EURO_1069201 are exactly identical! WARNING: Sequences tr_G7XCJ5_G7XCJ5_ASPKW_1033177 and tr_A0A1L9N9C5_A0A1L9N9C5_ASPTU_767770 are exactly identical! WARNING: Sequences tr_G7XCJ5_G7XCJ5_ASPKW_1033177 and tr_A0A317V7R8_A0A317V7R8_9EURO_1448314 are exactly identical! WARNING: Sequences tr_G5BP50_G5BP50_HETGA_10181 and tr_A0A2U4C728_A0A2U4C728_TURTR_9739 are exactly identical! WARNING: Sequences tr_G5BP50_G5BP50_HETGA_10181 and tr_A0A2Y9PVG4_A0A2Y9PVG4_DELLE_9749 are exactly identical! WARNING: Sequences tr_G5BP50_G5BP50_HETGA_10181 and tr_A0A2Y9EWX5_A0A2Y9EWX5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_B8B3X4_B8B3X4_ORYSI_39946 and sp_Q69TF4_PANK1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_F4P5L0_F4P5L0_BATDJ_684364 and tr_A0A177WS07_A0A177WS07_BATDE_403673 are exactly identical! WARNING: Sequences tr_H0YXF9_H0YXF9_TAEGU_59729 and tr_U3K4K4_U3K4K4_FICAL_59894 are exactly identical! WARNING: Sequences tr_F2PV78_F2PV78_TRIEC_559882 and tr_A0A059J6E7_A0A059J6E7_9EURO_1215338 are exactly identical! WARNING: Sequences tr_M4EEE6_M4EEE6_BRARP_51351 and tr_A0A078IPT0_A0A078IPT0_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4FG44_M4FG44_BRARP_51351 and tr_A0A078JBG2_A0A078JBG2_BRANA_3708 are exactly identical! WARNING: Sequences tr_V2YKG2_V2YKG2_MONRO_1381753 and tr_A0A0W0FME9_A0A0W0FME9_9AGAR_221103 are exactly identical! WARNING: Sequences tr_W2QRS9_W2QRS9_PHYPN_761204 and tr_A0A0W8CIN5_A0A0W8CIN5_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2QRS9_W2QRS9_PHYPN_761204 and tr_W2P0D5_W2P0D5_PHYPR_4792 are exactly identical! WARNING: Sequences tr_W2R2H7_W2R2H7_PHYPN_761204 and tr_W2KLH6_W2KLH6_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A015LKN5_A0A015LKN5_9GLOM_1432141 and tr_A0A2H5UB13_A0A2H5UB13_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A096MQI8_A0A096MQI8_PAPAN_9555 and tr_A0A2K6B8V2_A0A2K6B8V2_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3M0T2_A0A2I3M0T2_PAPAN_9555 and tr_A0A2K5MR70_A0A2K5MR70_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0D2T6F2_A0A0D2T6F2_GOSRA_29730 and tr_A0A1U8JEF1_A0A1U8JEF1_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A091EBT6_A0A091EBT6_CORBR_85066 and tr_A0A091JEJ0_A0A091JEJ0_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A091EBT6_A0A091EBT6_CORBR_85066 and tr_A0A093QDW0_A0A093QDW0_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091EBT6_A0A091EBT6_CORBR_85066 and tr_A0A091VH96_A0A091VH96_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091EBT6_A0A091EBT6_CORBR_85066 and tr_A0A087REI2_A0A087REI2_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091EBT6_A0A091EBT6_CORBR_85066 and tr_A0A093GHH7_A0A093GHH7_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091IPC6_A0A091IPC6_EGRGA_188379 and tr_A0A093QLT9_A0A093QLT9_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091IPC6_A0A091IPC6_EGRGA_188379 and tr_A0A091US19_A0A091US19_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091IPC6_A0A091IPC6_EGRGA_188379 and tr_A0A087QS72_A0A087QS72_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091IPC6_A0A091IPC6_EGRGA_188379 and tr_A0A091W523_A0A091W523_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091IPC6_A0A091IPC6_EGRGA_188379 and tr_A0A091GR97_A0A091GR97_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091JDI7_A0A091JDI7_EGRGA_188379 and tr_A0A091ULM0_A0A091ULM0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JDI7_A0A091JDI7_EGRGA_188379 and tr_A0A091W8Z8_A0A091W8Z8_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A093HUY7_A0A093HUY7_STRCA_441894 and tr_A0A099ZKN5_A0A099ZKN5_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091WEI7_A0A091WEI7_OPIHO_30419 and tr_A0A0A0AVJ5_A0A0A0AVJ5_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A0G4P352_A0A0G4P352_PENCA_1429867 and tr_A0A101MM56_A0A101MM56_9EURO_48697 are exactly identical! WARNING: Sequences tr_A0A0G4P352_A0A0G4P352_PENCA_1429867 and tr_A0A1V6NW34_A0A1V6NW34_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A0V0WM92_A0A0V0WM92_9BILA_92179 and tr_A0A0V1L174_A0A0V1L174_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0WM92_A0A0V0WM92_9BILA_92179 and tr_A0A0V1PAS4_A0A0V1PAS4_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A1S4CKF5_A0A1S4CKF5_TOBAC_4097 and tr_A0A1U7XWK8_A0A1U7XWK8_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1L9WUY7_A0A1L9WUY7_ASPAC_690307 and tr_A0A319CLM2_A0A319CLM2_9EURO_1448315 are exactly identical! WARNING: Sequences tr_A0A1L9WUY7_A0A1L9WUY7_ASPAC_690307 and tr_A0A2V5HYX3_A0A2V5HYX3_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A1L9WUY7_A0A1L9WUY7_ASPAC_690307 and tr_A0A2V5GU28_A0A2V5GU28_9EURO_1450538 are exactly identical! WARNING: Sequences tr_A0A2D0PJX2_A0A2D0PJX2_ICTPU_7998 and tr_A0A2D0PMH7_A0A2D0PMH7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2G3A1H8_A0A2G3A1H8_CAPAN_4072 and tr_A0A2G3CYF3_A0A2G3CYF3_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2K6CDQ2_A0A2K6CDQ2_MACNE_9545 and tr_A0A2K6A7E5_A0A2K6A7E5_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U3VSJ1_A0A2U3VSJ1_ODORO_9708 and tr_A0A384D414_A0A384D414_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2U3WFI1_A0A2U3WFI1_ODORO_9708 and tr_A0A2U3YS26_A0A2U3YS26_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 83 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BZ23/4_raxmlng_ancestral/Q9BZ23.raxml.reduced.phy Alignment comprises 1 partitions and 570 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 570 Gaps: 39.98 % Invariant sites: 0.35 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BZ23/4_raxmlng_ancestral/Q9BZ23.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BZ23/3_mltree/Q9BZ23.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 143 / 11440 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -125628.122908 [00:00:00 -125628.122908] Initial branch length optimization [00:00:02 -122492.043965] Model parameter optimization (eps = 0.100000) [00:01:50] Tree #1, final logLikelihood: -122081.780528 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.175241,0.180497) (0.181968,0.252174) (0.294609,0.793017) (0.348182,1.978425) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BZ23/4_raxmlng_ancestral/Q9BZ23.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BZ23/4_raxmlng_ancestral/Q9BZ23.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BZ23/4_raxmlng_ancestral/Q9BZ23.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BZ23/4_raxmlng_ancestral/Q9BZ23.raxml.log Analysis started: 03-Jun-2021 02:19:52 / finished: 03-Jun-2021 02:21:49 Elapsed time: 116.787 seconds Consumed energy: 7.843 Wh