RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 30-Jun-2021 21:36:00 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BY41/2_msa/Q9BY41_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BY41/3_mltree/Q9BY41 --seed 2 --threads 6 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (6 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BY41/2_msa/Q9BY41_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 407 sites

WARNING: Sequences tr_B4QR08_B4QR08_DROSI_7240 and sp_Q94517_HDAC1_DROME_7227 are exactly identical!
WARNING: Sequences tr_B4QR08_B4QR08_DROSI_7240 and tr_B4HU89_B4HU89_DROSE_7238 are exactly identical!
WARNING: Sequences tr_E9GZX2_E9GZX2_DAPPU_6669 and tr_A0A0P5V584_A0A0P5V584_9CRUS_35525 are exactly identical!
WARNING: Sequences tr_F1NH59_F1NH59_CHICK_9031 and tr_G1MT85_G1MT85_MELGA_9103 are exactly identical!
WARNING: Sequences tr_F1NH59_F1NH59_CHICK_9031 and tr_A0A091FNC9_A0A091FNC9_9AVES_55661 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and tr_G1QQE9_G1QQE9_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and tr_G3H942_G3H942_CRIGR_10029 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and sp_Q5RAG0_HDAC1_PONAB_9601 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and tr_G1SK67_G1SK67_RABIT_9986 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and tr_K7D1J2_K7D1J2_PANTR_9598 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and tr_W5QIG5_W5QIG5_SHEEP_9940 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and sp_Q4QQW4_HDAC1_RAT_10116 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and tr_H0WSN3_H0WSN3_OTOGA_30611 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and tr_H0VAT3_H0VAT3_CAVPO_10141 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and sp_Q13547_HDAC1_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and tr_F7CCQ4_F7CCQ4_CALJA_9483 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and sp_Q32PJ8_HDAC1_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and tr_A0A091DQL1_A0A091DQL1_FUKDA_885580 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and tr_A0A1S2ZR92_A0A1S2ZR92_ERIEU_9365 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and tr_A0A3Q0D557_A0A3Q0D557_MESAU_10036 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and tr_A0A2K5P110_A0A2K5P110_CERAT_9531 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and tr_A0A2K6AEA9_A0A2K6AEA9_MANLE_9568 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and tr_A0A2R9AMJ5_A0A2R9AMJ5_PANPA_9597 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and tr_A0A2U4BL12_A0A2U4BL12_TURTR_9739 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and tr_A0A2Y9FJL8_A0A2Y9FJL8_PHYCD_9755 are exactly identical!
WARNING: Sequences sp_O09106_HDAC1_MOUSE_10090 and tr_A0A383Z721_A0A383Z721_BALAS_310752 are exactly identical!
WARNING: Sequences sp_O88895_HDAC3_MOUSE_10090 and sp_Q6P6W3_HDAC3_RAT_10116 are exactly identical!
WARNING: Sequences sp_O88895_HDAC3_MOUSE_10090 and tr_A0A1U7QMI4_A0A1U7QMI4_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q8VH37_HDAC8_MOUSE_10090 and sp_B1WC68_HDAC8_RAT_10116 are exactly identical!
WARNING: Sequences tr_G9K3X3_G9K3X3_MUSPF_9669 and tr_G1LM86_G1LM86_AILME_9646 are exactly identical!
WARNING: Sequences tr_G9K3X3_G9K3X3_MUSPF_9669 and tr_A0A2U3WD82_A0A2U3WD82_ODORO_9708 are exactly identical!
WARNING: Sequences tr_G9K3X3_G9K3X3_MUSPF_9669 and tr_A0A2U3XRZ1_A0A2U3XRZ1_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_G9K3X3_G9K3X3_MUSPF_9669 and tr_A0A384CCW7_A0A384CCW7_URSMA_29073 are exactly identical!
WARNING: Sequences tr_M3Y1V5_M3Y1V5_MUSPF_9669 and tr_A0A287BJF9_A0A287BJF9_PIG_9823 are exactly identical!
WARNING: Sequences tr_M3Y9X0_M3Y9X0_MUSPF_9669 and tr_A0A2Y9KX58_A0A2Y9KX58_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_B6HBE9_B6HBE9_PENRW_500485 and tr_A0A1V6YSL1_A0A1V6YSL1_PENNA_60175 are exactly identical!
WARNING: Sequences tr_Q7KTS4_Q7KTS4_DROME_7227 and tr_B4I409_B4I409_DROSE_7238 are exactly identical!
WARNING: Sequences tr_E3RYC4_E3RYC4_PYRTT_861557 and tr_A0A2W1F648_A0A2W1F648_9PLEO_45151 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_G3RJT0_G3RJT0_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_H2PGW3_H2PGW3_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_G1SW87_G1SW87_RABIT_9986 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_E2R792_E2R792_CANLF_9615 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_H2QRN6_H2QRN6_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_W5NRS8_W5NRS8_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_I3MR66_I3MR66_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_H0VQN2_H0VQN2_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and sp_O15379_HDAC3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_G5AQQ9_G5AQQ9_HETGA_10181 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_F6RM17_F6RM17_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_G1LVB1_G1LVB1_AILME_9646 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_L5JVA0_L5JVA0_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_M3W6Q1_M3W6Q1_FELCA_9685 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_A0A096MPL2_A0A096MPL2_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_A0A091CP69_A0A091CP69_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_A0A1U7UIE1_A0A1U7UIE1_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_A0A2K5KYV0_A0A2K5KYV0_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_A0A2K6BMU6_A0A2K6BMU6_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_A0A2K5ZJ07_A0A2K5ZJ07_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_A0A2R9BGK3_A0A2R9BGK3_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_A0A2U3V0F6_A0A2U3V0F6_TURTR_9739 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_A0A2U3VRD3_A0A2U3VRD3_ODORO_9708 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_A0A2U3Z3X5_A0A2U3Z3X5_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_A0A2Y9PRW8_A0A2Y9PRW8_DELLE_9749 are exactly identical!
WARNING: Sequences tr_G1PBZ1_G1PBZ1_MYOLU_59463 and tr_A0A384C4B1_A0A384C4B1_URSMA_29073 are exactly identical!
WARNING: Sequences tr_G1PNQ7_G1PNQ7_MYOLU_59463 and tr_L5JRG0_L5JRG0_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_J3KDP2_J3KDP2_COCIM_246410 and tr_E9D969_E9D969_COCPS_443226 are exactly identical!
WARNING: Sequences tr_J3KDP2_J3KDP2_COCIM_246410 and tr_A0A0J6YA91_A0A0J6YA91_COCIT_404692 are exactly identical!
WARNING: Sequences tr_B6QP64_B6QP64_TALMQ_441960 and tr_A0A093V6N8_A0A093V6N8_TALMA_1077442 are exactly identical!
WARNING: Sequences tr_C1GB14_C1GB14_PARBD_502780 and tr_C1H7K1_C1H7K1_PARBA_502779 are exactly identical!
WARNING: Sequences tr_C0NBF3_C0NBF3_AJECG_447093 and tr_F0UKK7_F0UKK7_AJEC8_544711 are exactly identical!
WARNING: Sequences tr_B5DXY4_B5DXY4_DROPS_46245 and tr_B4GF88_B4GF88_DROPE_7234 are exactly identical!
WARNING: Sequences tr_B8NLM0_B8NLM0_ASPFN_332952 and tr_K4PX59_K4PX59_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_A0A179UJU3_A0A179UJU3_BLAGS_559298 and tr_C5GBX0_C5GBX0_AJEDR_559297 are exactly identical!
WARNING: Sequences tr_J9NUI0_J9NUI0_CANLF_9615 and tr_A0A2I2UTS8_A0A2I2UTS8_FELCA_9685 are exactly identical!
WARNING: Sequences tr_J9P5B2_J9P5B2_CANLF_9615 and tr_A0A2I2UIS7_A0A2I2UIS7_FELCA_9685 are exactly identical!
WARNING: Sequences tr_A0A2I3T0A0_A0A2I3T0A0_PANTR_9598 and tr_A0A2R8ZRY9_A0A2R8ZRY9_PANPA_9597 are exactly identical!
WARNING: Sequences tr_E9EYY3_E9EYY3_METRA_655844 and tr_A0A0D9P5A1_A0A0D9P5A1_METAN_1291518 are exactly identical!
WARNING: Sequences tr_A0A158NIR6_A0A158NIR6_ATTCE_12957 and tr_F4WDF1_F4WDF1_ACREC_103372 are exactly identical!
WARNING: Sequences tr_A0A158NKZ2_A0A158NKZ2_ATTCE_12957 and tr_A0A151X3P9_A0A151X3P9_9HYME_64791 are exactly identical!
WARNING: Sequences tr_A0A158NKZ2_A0A158NKZ2_ATTCE_12957 and tr_A0A151JAD5_A0A151JAD5_9HYME_471704 are exactly identical!
WARNING: Sequences tr_A0A158NKZ2_A0A158NKZ2_ATTCE_12957 and tr_A0A151I2N9_A0A151I2N9_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A158NKZ2_A0A158NKZ2_ATTCE_12957 and tr_A0A195FTX4_A0A195FTX4_9HYME_34720 are exactly identical!
WARNING: Sequences tr_A0A158NKZ2_A0A158NKZ2_ATTCE_12957 and tr_A0A151IM03_A0A151IM03_9HYME_456900 are exactly identical!
WARNING: Sequences tr_A0A158NN93_A0A158NN93_ATTCE_12957 and tr_A0A151XAF7_A0A151XAF7_9HYME_64791 are exactly identical!
WARNING: Sequences tr_A0A158NN93_A0A158NN93_ATTCE_12957 and tr_A0A195EDT5_A0A195EDT5_9HYME_471704 are exactly identical!
WARNING: Sequences tr_A0A158NN93_A0A158NN93_ATTCE_12957 and tr_A0A195AV22_A0A195AV22_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A158NN93_A0A158NN93_ATTCE_12957 and tr_A0A195FWD1_A0A195FWD1_9HYME_34720 are exactly identical!
WARNING: Sequences tr_G9PA63_G9PA63_HYPAI_452589 and tr_A0A2K0TRI7_A0A2K0TRI7_9HYPO_398673 are exactly identical!
WARNING: Sequences tr_A1CZ36_A1CZ36_NEOFI_331117 and tr_A0A2I1CKV8_A0A2I1CKV8_9EURO_1392255 are exactly identical!
WARNING: Sequences tr_A5AAY6_A5AAY6_ASPNC_425011 and tr_G3XZA8_G3XZA8_ASPNA_380704 are exactly identical!
WARNING: Sequences tr_A5AAY6_A5AAY6_ASPNC_425011 and tr_A0A319AEL0_A0A319AEL0_9EURO_1450533 are exactly identical!
WARNING: Sequences tr_A0A1D5QWF8_A0A1D5QWF8_MACMU_9544 and tr_G7Q312_G7Q312_MACFA_9541 are exactly identical!
WARNING: Sequences tr_A0A1D5QWF8_A0A1D5QWF8_MACMU_9544 and tr_A0A2K6C7N2_A0A2K6C7N2_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G7XE23_G7XE23_ASPKW_1033177 and tr_A0A124BWE9_A0A124BWE9_ASPNG_5061 are exactly identical!
WARNING: Sequences tr_G7XE23_G7XE23_ASPKW_1033177 and tr_A0A146F2D5_A0A146F2D5_9EURO_1069201 are exactly identical!
WARNING: Sequences tr_G7XE23_G7XE23_ASPKW_1033177 and tr_A0A1L9MZH5_A0A1L9MZH5_ASPTU_767770 are exactly identical!
WARNING: Sequences tr_G7XE23_G7XE23_ASPKW_1033177 and tr_A0A1L9UM48_A0A1L9UM48_9EURO_767769 are exactly identical!
WARNING: Sequences tr_G7XE23_G7XE23_ASPKW_1033177 and tr_A0A317W1V8_A0A317W1V8_9EURO_1448314 are exactly identical!
WARNING: Sequences tr_Q7Q5D2_Q7Q5D2_ANOGA_7165 and tr_A0A084WMI3_A0A084WMI3_ANOSI_74873 are exactly identical!
WARNING: Sequences tr_H3CXN6_H3CXN6_TETNG_99883 and sp_Q4SFA0_HDAC3_TETNG_99883 are exactly identical!
WARNING: Sequences tr_D4AVT5_D4AVT5_ARTBC_663331 and tr_A0A178F0M7_A0A178F0M7_TRIRU_5551 are exactly identical!
WARNING: Sequences tr_G0RKP3_G0RKP3_HYPJQ_431241 and tr_A0A2T4BQC6_A0A2T4BQC6_TRILO_983965 are exactly identical!
WARNING: Sequences tr_C4V7M2_C4V7M2_NOSCE_578460 and tr_A0A0F9ZEW2_A0A0F9ZEW2_9MICR_40302 are exactly identical!
WARNING: Sequences tr_K9FM26_K9FM26_PEND2_1170229 and tr_A0A0A2KYB5_A0A0A2KYB5_PENIT_40296 are exactly identical!
WARNING: Sequences tr_L8FWC7_L8FWC7_PSED2_658429 and tr_A0A094F8U3_A0A094F8U3_9PEZI_1420912 are exactly identical!
WARNING: Sequences tr_L8FWC7_L8FWC7_PSED2_658429 and tr_A0A1B8GQ78_A0A1B8GQ78_9PEZI_342668 are exactly identical!
WARNING: Sequences tr_L8FWC7_L8FWC7_PSED2_658429 and tr_A0A1B8EL89_A0A1B8EL89_9PEZI_1622149 are exactly identical!
WARNING: Sequences tr_L2GEU1_L2GEU1_COLFN_1213859 and tr_T0KXF3_T0KXF3_COLGC_1237896 are exactly identical!
WARNING: Sequences tr_M4DSD1_M4DSD1_BRARP_51351 and tr_A0A0D3BGR2_A0A0D3BGR2_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_M4F458_M4F458_BRARP_51351 and tr_A0A078FUS7_A0A078FUS7_BRANA_3708 are exactly identical!
WARNING: Sequences tr_M2SP92_M2SP92_COCSN_665912 and tr_M2ST02_M2ST02_COCH5_701091 are exactly identical!
WARNING: Sequences tr_A0A015K824_A0A015K824_9GLOM_1432141 and tr_A0A2I1FVA1_A0A2I1FVA1_9GLOM_588596 are exactly identical!
WARNING: Sequences tr_A0A015K824_A0A015K824_9GLOM_1432141 and tr_A0A2H5TIH7_A0A2H5TIH7_RHIID_747089 are exactly identical!
WARNING: Sequences tr_A0A067FQK8_A0A067FQK8_CITSI_2711 and tr_V4S5E5_V4S5E5_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_A0A067FQK8_A0A067FQK8_CITSI_2711 and tr_A0A2H5P1E7_A0A2H5P1E7_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A096MM52_A0A096MM52_PAPAN_9555 and tr_A0A2K5LM21_A0A2K5LM21_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A078HSC9_A0A078HSC9_BRANA_3708 and tr_A0A0D3BFI7_A0A0D3BFI7_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_A0A078IDI1_A0A078IDI1_BRANA_3708 and tr_A0A0D3E200_A0A0D3E200_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_A0A0F4GPH0_A0A0F4GPH0_9PEZI_1047168 and tr_A0A1X7RBU0_A0A1X7RBU0_ZYMTR_1276538 are exactly identical!
WARNING: Sequences tr_A0A0F8WDD7_A0A0F8WDD7_9EURO_308745 and tr_A0A2T5M966_A0A2T5M966_9EURO_1392256 are exactly identical!
WARNING: Sequences tr_A0A0K0FVZ4_A0A0K0FVZ4_STRVS_75913 and tr_A0A0N5BY35_A0A0N5BY35_STREA_174720 are exactly identical!
WARNING: Sequences tr_A0A0A1NE51_A0A0A1NE51_9FUNG_58291 and tr_A0A367JFN9_A0A367JFN9_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A0A1PJP8_A0A0A1PJP8_9FUNG_58291 and tr_A0A367J196_A0A367J196_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A091ETA1_A0A091ETA1_CORBR_85066 and tr_A0A093PP79_A0A093PP79_9PASS_328815 are exactly identical!
WARNING: Sequences tr_A0A087RCS1_A0A087RCS1_APTFO_9233 and tr_A0A093HY60_A0A093HY60_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A0A087RCS1_A0A087RCS1_APTFO_9233 and tr_A0A0A0AG00_A0A0A0AG00_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A087RCS1_A0A087RCS1_APTFO_9233 and tr_A0A093H6L4_A0A093H6L4_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_A0A087RCS1_A0A087RCS1_APTFO_9233 and tr_A0A091HY66_A0A091HY66_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A0G4NT33_A0A0G4NT33_PENCA_1429867 and tr_A0A117NSF5_A0A117NSF5_9EURO_48697 are exactly identical!
WARNING: Sequences tr_A0A0G4NT33_A0A0G4NT33_PENCA_1429867 and tr_A0A1V6NPN1_A0A1V6NPN1_9EURO_60169 are exactly identical!
WARNING: Sequences tr_A0A0G4NT33_A0A0G4NT33_PENCA_1429867 and tr_A0A1V6RH94_A0A1V6RH94_9EURO_60172 are exactly identical!
WARNING: Sequences tr_W6XRB2_W6XRB2_COCCA_930089 and tr_W6ZCH3_W6ZCH3_COCMI_930090 are exactly identical!
WARNING: Sequences tr_A0A0V0W9P4_A0A0V0W9P4_9BILA_92179 and tr_A0A0V0V5E8_A0A0V0V5E8_9BILA_181606 are exactly identical!
WARNING: Sequences tr_A0A0V0W9P4_A0A0V0W9P4_9BILA_92179 and tr_A0A0V1L0G6_A0A0V1L0G6_9BILA_6335 are exactly identical!
WARNING: Sequences tr_A0A0V0W9P4_A0A0V0W9P4_9BILA_92179 and tr_A0A0V0ZFJ2_A0A0V0ZFJ2_9BILA_990121 are exactly identical!
WARNING: Sequences tr_A0A166V4J2_A0A166V4J2_9PEZI_708197 and tr_A0A167AVN0_A0A167AVN0_9PEZI_1573173 are exactly identical!
WARNING: Sequences tr_A0A151J7A8_A0A151J7A8_9HYME_471704 and tr_A0A195FTH2_A0A195FTH2_9HYME_34720 are exactly identical!
WARNING: Sequences tr_A0A1S4C3H7_A0A1S4C3H7_TOBAC_4097 and tr_A0A1U7VZR4_A0A1U7VZR4_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S4CYB5_A0A1S4CYB5_TOBAC_4097 and tr_A0A1U7XD47_A0A1U7XD47_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S4DL73_A0A1S4DL73_TOBAC_4097 and tr_A0A1U7X210_A0A1U7X210_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S3RUS2_A0A1S3RUS2_SALSA_8030 and tr_A0A060VZ47_A0A060VZ47_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_B5X1R2_B5X1R2_SALSA_8030 and tr_A0A060XIY4_A0A060XIY4_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1L9X3Q3_A0A1L9X3Q3_ASPAC_690307 and tr_A0A319CIC7_A0A319CIC7_9EURO_1448315 are exactly identical!
WARNING: Sequences tr_A0A1L9X3Q3_A0A1L9X3Q3_ASPAC_690307 and tr_A0A318Z3N5_A0A318Z3N5_9EURO_1450539 are exactly identical!
WARNING: Sequences tr_A0A1L9X3Q3_A0A1L9X3Q3_ASPAC_690307 and tr_A0A2V5IB56_A0A2V5IB56_9EURO_1450541 are exactly identical!
WARNING: Sequences tr_A0A1L9X3Q3_A0A1L9X3Q3_ASPAC_690307 and tr_A0A2V5I0C0_A0A2V5I0C0_9EURO_1450538 are exactly identical!
WARNING: Sequences tr_A0A1R3RNG7_A0A1R3RNG7_ASPC5_602072 and tr_A0A317VHC7_A0A317VHC7_9EURO_1450535 are exactly identical!
WARNING: Sequences tr_A0A1R3RNG7_A0A1R3RNG7_ASPC5_602072 and tr_A0A395H2X3_A0A395H2X3_9EURO_1448316 are exactly identical!
WARNING: Sequences tr_A0A1V8UM93_A0A1V8UM93_9PEZI_1974281 and tr_A0A1V8V176_A0A1V8V176_9PEZI_1974281 are exactly identical!
WARNING: Sequences tr_A0A1V8UM93_A0A1V8UM93_9PEZI_1974281 and tr_A0A1V8TUP7_A0A1V8TUP7_9PEZI_1507870 are exactly identical!
WARNING: Sequences tr_A0A226NBG5_A0A226NBG5_CALSU_9009 and tr_A0A226PD51_A0A226PD51_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A2H3C9H3_A0A2H3C9H3_9AGAR_1076256 and tr_A0A284QWD9_A0A284QWD9_9AGAR_47428 are exactly identical!
WARNING: Sequences tr_A0A2H3EYP6_A0A2H3EYP6_9HELO_946125 and tr_A0A2H3FBW4_A0A2H3FBW4_9HELO_946125 are exactly identical!
WARNING: Sequences tr_A0A1U8EWM8_A0A1U8EWM8_CAPAN_4072 and tr_A0A2G3C9U2_A0A2G3C9U2_CAPCH_80379 are exactly identical!
WARNING: Sequences tr_A0A2I2F144_A0A2I2F144_9EURO_41067 and tr_A0A2J5I8B6_A0A2J5I8B6_9EURO_482145 are exactly identical!
WARNING: Sequences tr_A0A2U1L1U7_A0A2U1L1U7_ARTAN_35608 and tr_A0A2U1Q2L8_A0A2U1Q2L8_ARTAN_35608 are exactly identical!
WARNING: Sequences tr_A0A367XWA8_A0A367XWA8_9ASCO_5486 and tr_A0A367YFM1_A0A367YFM1_9ASCO_5486 are exactly identical!
WARNING: Duplicate sequences found: 157

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BY41/3_mltree/Q9BY41.raxml.reduced.phy

Alignment comprises 1 partitions and 401 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 407 / 401
Gaps: 2.92 %
Invariant sites: 5.65 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BY41/3_mltree/Q9BY41.raxml.rba

Parallelization scheme autoconfig: 3 worker(s) x 2 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 201 / 16080
[00:00:00] Data distribution: max. searches per worker: 7

Starting ML tree search with 20 distinct starting trees

[00:00:00 -493234.937495] Initial branch length optimization
[00:00:07 -415239.965941] Model parameter optimization (eps = 10.000000)
[00:00:58 -412689.384571] AUTODETECT spr round 1 (radius: 5)
[00:19:26 -266231.793934] AUTODETECT spr round 2 (radius: 10)
[00:27:19 -179104.759934] AUTODETECT spr round 3 (radius: 15)
[00:35:42 -151276.878267] AUTODETECT spr round 4 (radius: 20)
[00:46:38 -132842.000787] AUTODETECT spr round 5 (radius: 25)
[00:58:19 -128953.155999] SPR radius for FAST iterations: 25 (autodetect)
[00:58:19 -128953.155999] Model parameter optimization (eps = 3.000000)
[00:59:21 -128886.465765] FAST spr round 1 (radius: 25)
[01:05:40 -108453.641726] FAST spr round 2 (radius: 25)
[01:10:30 -107066.324966] FAST spr round 3 (radius: 25)
[01:14:41 -106984.867294] FAST spr round 4 (radius: 25)
[01:18:26 -106972.423062] FAST spr round 5 (radius: 25)
[01:21:58 -106971.811066] FAST spr round 6 (radius: 25)
[01:25:25 -106971.810652] Model parameter optimization (eps = 1.000000)
[01:25:53 -106970.508751] SLOW spr round 1 (radius: 5)
[01:31:39 -106943.694355] SLOW spr round 2 (radius: 5)
[01:36:59 -106935.889416] SLOW spr round 3 (radius: 5)
[01:41:43 -106935.889166] SLOW spr round 4 (radius: 10)
[01:46:35 -106935.231794] SLOW spr round 5 (radius: 5)
[01:52:43 -106930.938139] SLOW spr round 6 (radius: 5)
[01:59:24 -106928.881700] SLOW spr round 7 (radius: 5)
[02:01:31] [worker #2] ML tree search #3, logLikelihood: -106962.968268
[02:04:47 -106928.881696] SLOW spr round 8 (radius: 10)
[02:11:33 -106928.881696] SLOW spr round 9 (radius: 15)
[02:22:44 -106928.881692] SLOW spr round 10 (radius: 20)
[02:36:13 -106928.881692] SLOW spr round 11 (radius: 25)
[02:49:39 -106928.881692] Model parameter optimization (eps = 0.100000)

[02:49:51] [worker #0] ML tree search #1, logLikelihood: -106928.795414

[02:49:52 -492689.895193] Initial branch length optimization
[02:50:11 -412435.716405] Model parameter optimization (eps = 10.000000)
[02:51:18] [worker #1] ML tree search #2, logLikelihood: -106936.988179
[02:51:57 -409999.423413] AUTODETECT spr round 1 (radius: 5)
[02:58:33 -265099.579397] AUTODETECT spr round 2 (radius: 10)
[03:05:53 -183257.796201] AUTODETECT spr round 3 (radius: 15)
[03:13:23 -157576.104968] AUTODETECT spr round 4 (radius: 20)
[03:23:12 -140572.497818] AUTODETECT spr round 5 (radius: 25)
[03:34:13 -128957.101161] SPR radius for FAST iterations: 25 (autodetect)
[03:34:13 -128957.101161] Model parameter optimization (eps = 3.000000)
[03:35:12 -128905.675101] FAST spr round 1 (radius: 25)
[03:59:28 -107969.337820] FAST spr round 2 (radius: 25)
[04:01:35] [worker #2] ML tree search #6, logLikelihood: -106935.981593
[04:04:33 -107109.030326] FAST spr round 3 (radius: 25)
[04:08:47 -107003.359736] FAST spr round 4 (radius: 25)
[04:13:12 -106979.618438] FAST spr round 5 (radius: 25)
[04:18:00 -106975.648594] FAST spr round 6 (radius: 25)
[04:22:30 -106974.395481] FAST spr round 7 (radius: 25)
[04:27:25 -106974.394436] Model parameter optimization (eps = 1.000000)
[04:28:08 -106967.963044] SLOW spr round 1 (radius: 5)
[04:35:00 -106943.509934] SLOW spr round 2 (radius: 5)
[04:41:50 -106936.389169] SLOW spr round 3 (radius: 5)
[04:48:27 -106936.318110] SLOW spr round 4 (radius: 10)
[04:52:51 -106936.317884] SLOW spr round 5 (radius: 15)
[05:00:32 -106936.317878] SLOW spr round 6 (radius: 20)
[05:09:06 -106936.317873] SLOW spr round 7 (radius: 25)
[05:10:23] [worker #1] ML tree search #5, logLikelihood: -106938.602057
[05:16:44 -106936.317869] Model parameter optimization (eps = 0.100000)

[05:16:57] [worker #0] ML tree search #4, logLikelihood: -106936.287773

[05:16:57 -495183.502727] Initial branch length optimization
[05:17:14 -415741.450981] Model parameter optimization (eps = 10.000000)
[05:18:55 -413346.981249] AUTODETECT spr round 1 (radius: 5)
[05:39:09] [worker #2] ML tree search #9, logLikelihood: -106917.430457
[05:45:28 -255819.835765] AUTODETECT spr round 2 (radius: 10)
[06:00:13 -178615.486098] AUTODETECT spr round 3 (radius: 15)
[06:24:16 -139833.788174] AUTODETECT spr round 4 (radius: 20)
[06:31:33 -124571.416997] AUTODETECT spr round 5 (radius: 25)
[06:40:19] [worker #1] ML tree search #8, logLikelihood: -106931.381120
[06:42:55 -123191.772022] SPR radius for FAST iterations: 25 (autodetect)
[06:42:55 -123191.772022] Model parameter optimization (eps = 3.000000)
[06:43:54 -123150.058497] FAST spr round 1 (radius: 25)
[06:51:48 -107606.597385] FAST spr round 2 (radius: 25)
[06:57:58 -106989.074022] FAST spr round 3 (radius: 25)
[07:03:39 -106959.157574] FAST spr round 4 (radius: 25)
[07:06:58 -106949.185771] FAST spr round 5 (radius: 25)
[07:08:47 -106944.379933] FAST spr round 6 (radius: 25)
[07:10:32 -106944.379701] Model parameter optimization (eps = 1.000000)
[07:10:52 -106940.857292] SLOW spr round 1 (radius: 5)
[07:13:23 -106917.902618] SLOW spr round 2 (radius: 5)
[07:15:42 -106917.510336] SLOW spr round 3 (radius: 5)
[07:18:01 -106916.671400] SLOW spr round 4 (radius: 5)
[07:20:19 -106916.671399] SLOW spr round 5 (radius: 10)
[07:23:00 -106916.671399] SLOW spr round 6 (radius: 15)
[07:33:03 -106916.671399] SLOW spr round 7 (radius: 20)
[07:38:24 -106916.671399] SLOW spr round 8 (radius: 25)
[07:49:44 -106916.671399] Model parameter optimization (eps = 0.100000)

[07:49:51] [worker #0] ML tree search #7, logLikelihood: -106916.647212

[07:49:52 -496712.228097] Initial branch length optimization
[07:50:10 -417009.710645] Model parameter optimization (eps = 10.000000)
[07:55:13 -414512.613736] AUTODETECT spr round 1 (radius: 5)
[08:01:27 -264476.007247] AUTODETECT spr round 2 (radius: 10)
[08:05:50 -182682.296565] AUTODETECT spr round 3 (radius: 15)
[08:11:14 -140682.399352] AUTODETECT spr round 4 (radius: 20)
[08:18:42 -129295.565601] AUTODETECT spr round 5 (radius: 25)
[08:26:58 -128014.874251] SPR radius for FAST iterations: 25 (autodetect)
[08:26:58 -128014.874251] Model parameter optimization (eps = 3.000000)
[08:27:48 -127938.204520] FAST spr round 1 (radius: 25)
[08:39:55] [worker #2] ML tree search #12, logLikelihood: -106913.439055
[08:41:37 -107954.662235] FAST spr round 2 (radius: 25)
[08:45:02 -107064.211360] FAST spr round 3 (radius: 25)
[08:47:27 -107014.061732] FAST spr round 4 (radius: 25)
[08:50:02 -106997.630844] FAST spr round 5 (radius: 25)
[08:52:39 -106997.461228] FAST spr round 6 (radius: 25)
[08:57:10 -106997.461115] Model parameter optimization (eps = 1.000000)
[08:57:52 -106991.815257] SLOW spr round 1 (radius: 5)
[09:03:46 -106959.768937] SLOW spr round 2 (radius: 5)
[09:07:29 -106948.753841] SLOW spr round 3 (radius: 5)
[09:11:24 -106948.753382] SLOW spr round 4 (radius: 10)
[09:17:15 -106940.610053] SLOW spr round 5 (radius: 5)
[09:26:02 -106937.343404] SLOW spr round 6 (radius: 5)
[09:31:54 -106937.077520] SLOW spr round 7 (radius: 5)
[09:32:01] [worker #1] ML tree search #11, logLikelihood: -106918.455130
[09:37:03 -106937.077424] SLOW spr round 8 (radius: 10)
[09:43:13 -106937.077422] SLOW spr round 9 (radius: 15)
[09:51:18 -106937.077376] SLOW spr round 10 (radius: 20)
[09:56:30 -106937.077376] SLOW spr round 11 (radius: 25)
[10:11:42 -106937.077376] Model parameter optimization (eps = 0.100000)

[10:12:04] [worker #0] ML tree search #10, logLikelihood: -106936.564141

[10:12:05 -494324.793050] Initial branch length optimization
[10:13:12 -414635.262725] Model parameter optimization (eps = 10.000000)
[10:15:24 -412158.804211] AUTODETECT spr round 1 (radius: 5)
[10:22:59 -267981.554143] AUTODETECT spr round 2 (radius: 10)
[10:30:42 -188376.426591] AUTODETECT spr round 3 (radius: 15)
[10:38:13 -139156.889840] AUTODETECT spr round 4 (radius: 20)
[10:44:13 -124791.263672] AUTODETECT spr round 5 (radius: 25)
[10:48:34 -124338.937211] SPR radius for FAST iterations: 25 (autodetect)
[10:48:34 -124338.937211] Model parameter optimization (eps = 3.000000)
[10:48:55 -124268.684650] FAST spr round 1 (radius: 25)
[10:51:53 -107562.342118] FAST spr round 2 (radius: 25)
[10:54:18 -107055.705987] FAST spr round 3 (radius: 25)
[10:56:43 -106957.730053] FAST spr round 4 (radius: 25)
[11:01:34 -106934.131435] FAST spr round 5 (radius: 25)
[11:05:40 -106932.100530] FAST spr round 6 (radius: 25)
[11:09:17 -106932.100507] Model parameter optimization (eps = 1.000000)
[11:09:38 -106931.285020] SLOW spr round 1 (radius: 5)
[11:28:26] [worker #2] ML tree search #15, logLikelihood: -106948.728610
[11:30:12 -106914.169555] SLOW spr round 2 (radius: 5)
[11:39:50 -106909.765449] SLOW spr round 3 (radius: 5)
[11:44:52 -106909.174249] SLOW spr round 4 (radius: 5)
[11:51:56 -106908.985534] SLOW spr round 5 (radius: 5)
[11:58:54 -106908.985457] SLOW spr round 6 (radius: 10)
[12:05:53 -106908.985395] SLOW spr round 7 (radius: 15)
[12:10:18 -106908.985392] SLOW spr round 8 (radius: 20)
[12:17:20 -106908.985392] SLOW spr round 9 (radius: 25)
[12:25:20 -106908.985392] Model parameter optimization (eps = 0.100000)

[12:25:32] [worker #0] ML tree search #13, logLikelihood: -106908.951551

[12:25:33 -494950.595925] Initial branch length optimization
[12:26:09 -415682.037295] Model parameter optimization (eps = 10.000000)
[12:27:59 -413130.590566] AUTODETECT spr round 1 (radius: 5)
[12:35:21 -265964.933288] AUTODETECT spr round 2 (radius: 10)
[12:43:00] [worker #1] ML tree search #14, logLikelihood: -106922.398989
[12:47:12 -177406.455740] AUTODETECT spr round 3 (radius: 15)
[12:54:03 -147960.760128] AUTODETECT spr round 4 (radius: 20)
[13:01:18 -135467.820921] AUTODETECT spr round 5 (radius: 25)
[13:09:29 -130345.876544] SPR radius for FAST iterations: 25 (autodetect)
[13:09:29 -130345.876544] Model parameter optimization (eps = 3.000000)
[13:10:13 -130258.344547] FAST spr round 1 (radius: 25)
[13:18:54 -107805.863109] FAST spr round 2 (radius: 25)
[13:24:35 -107062.822138] FAST spr round 3 (radius: 25)
[13:28:38 -107004.518482] FAST spr round 4 (radius: 25)
[13:32:43 -106992.624334] FAST spr round 5 (radius: 25)
[13:34:57 -106992.623315] Model parameter optimization (eps = 1.000000)
[13:35:32 -106983.703162] SLOW spr round 1 (radius: 5)
[13:40:41 -106943.801445] SLOW spr round 2 (radius: 5)
[13:45:40 -106925.902869] SLOW spr round 3 (radius: 5)
[13:50:24 -106923.171253] SLOW spr round 4 (radius: 5)
[13:55:20 -106922.683050] SLOW spr round 5 (radius: 5)
[13:58:32 -106922.683050] SLOW spr round 6 (radius: 10)
[14:00:51 -106922.683050] SLOW spr round 7 (radius: 15)
[14:04:51 -106922.683050] SLOW spr round 8 (radius: 20)
[14:14:53] [worker #2] ML tree search #18, logLikelihood: -106943.855951
[14:15:06 -106922.683050] SLOW spr round 9 (radius: 25)
[14:26:58 -106922.683050] Model parameter optimization (eps = 0.100000)

[14:27:17] [worker #0] ML tree search #16, logLikelihood: -106922.168611

[14:27:17 -496434.921395] Initial branch length optimization
[14:27:46 -417559.812078] Model parameter optimization (eps = 10.000000)
[14:29:48 -415083.907196] AUTODETECT spr round 1 (radius: 5)
[14:37:03 -264325.245791] AUTODETECT spr round 2 (radius: 10)
[14:43:49 -181805.930432] AUTODETECT spr round 3 (radius: 15)
[14:48:28 -149645.748412] AUTODETECT spr round 4 (radius: 20)
[14:56:18 -138252.529399] AUTODETECT spr round 5 (radius: 25)
[15:05:51 -130074.013774] SPR radius for FAST iterations: 25 (autodetect)
[15:05:51 -130074.013774] Model parameter optimization (eps = 3.000000)
[15:06:45 -130014.307112] FAST spr round 1 (radius: 25)
[15:11:47 -108421.879543] FAST spr round 2 (radius: 25)
[15:12:35] [worker #1] ML tree search #17, logLikelihood: -106921.432701
[15:15:31 -107163.092303] FAST spr round 3 (radius: 25)
[15:18:06 -106995.667360] FAST spr round 4 (radius: 25)
[15:21:33 -106969.229270] FAST spr round 5 (radius: 25)
[15:24:49 -106965.602469] FAST spr round 6 (radius: 25)
[15:28:18 -106965.602318] Model parameter optimization (eps = 1.000000)
[15:28:51 -106960.056154] SLOW spr round 1 (radius: 5)
[15:33:54 -106931.371693] SLOW spr round 2 (radius: 5)
[15:38:31 -106916.427191] SLOW spr round 3 (radius: 5)
[15:43:47 -106916.426909] SLOW spr round 4 (radius: 10)
[15:48:04 -106916.426442] SLOW spr round 5 (radius: 15)
[15:54:03 -106916.426383] SLOW spr round 6 (radius: 20)
[16:04:15 -106916.426327] SLOW spr round 7 (radius: 25)
[16:17:34 -106916.426271] Model parameter optimization (eps = 0.100000)

[16:17:59] [worker #0] ML tree search #19, logLikelihood: -106916.220055

[17:00:19] [worker #1] ML tree search #20, logLikelihood: -106924.291293

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.230378,0.278959) (0.322406,0.445547) (0.268191,1.091575) (0.179024,2.789211) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -106908.951551

AIC score: 217827.903101 / AICc score: 8261887.903101 / BIC score: 225865.573538
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=407).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BY41/3_mltree/Q9BY41.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BY41/3_mltree/Q9BY41.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BY41/3_mltree/Q9BY41.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BY41/3_mltree/Q9BY41.raxml.log

Analysis started: 30-Jun-2021 21:36:00 / finished: 01-Jul-2021 14:36:20

Elapsed time: 61219.266 seconds