RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 03-Jun-2021 01:22:22 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BXM7/2_msa/Q9BXM7_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BXM7/3_mltree/Q9BXM7.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BXM7/4_raxmlng_ancestral/Q9BXM7 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622672542 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BXM7/2_msa/Q9BXM7_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 581 sites WARNING: Sequences sp_Q923T9_KCC2G_MOUSE_10090 and tr_E2RG56_E2RG56_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q923T9_KCC2G_MOUSE_10090 and tr_A0A2I3TUE7_A0A2I3TUE7_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q923T9_KCC2G_MOUSE_10090 and tr_F6TEC0_F6TEC0_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q923T9_KCC2G_MOUSE_10090 and sp_P11730_KCC2G_RAT_10116 are exactly identical! WARNING: Sequences sp_Q923T9_KCC2G_MOUSE_10090 and sp_Q13555_KCC2G_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q923T9_KCC2G_MOUSE_10090 and tr_A0A2R8MTB2_A0A2R8MTB2_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q923T9_KCC2G_MOUSE_10090 and tr_A0A286ZKT1_A0A286ZKT1_PIG_9823 are exactly identical! WARNING: Sequences sp_Q923T9_KCC2G_MOUSE_10090 and tr_A0A2I2U9U9_A0A2I2U9U9_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q923T9_KCC2G_MOUSE_10090 and tr_A0A096P4K7_A0A096P4K7_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q923T9_KCC2G_MOUSE_10090 and tr_A0A0D9R9D2_A0A0D9R9D2_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q923T9_KCC2G_MOUSE_10090 and tr_A0A1S3W7V0_A0A1S3W7V0_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q923T9_KCC2G_MOUSE_10090 and tr_A0A2K5NKH4_A0A2K5NKH4_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q923T9_KCC2G_MOUSE_10090 and tr_A0A2Y9J612_A0A2Y9J612_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q00168_KCC2A_DROME_7227 and tr_B4IKQ9_B4IKQ9_DROSE_7238 are exactly identical! WARNING: Sequences sp_Q00168_KCC2A_DROME_7227 and tr_A0A0P9A9G3_A0A0P9A9G3_DROAN_7217 are exactly identical! WARNING: Sequences tr_A0A3B3I4D7_A0A3B3I4D7_ORYLA_8090 and tr_A0A3B5QEA1_A0A3B5QEA1_XIPMA_8083 are exactly identical! WARNING: Sequences tr_B4JZN8_B4JZN8_DROGR_7222 and tr_A0A0Q9WUI9_A0A0Q9WUI9_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4JZN8_B4JZN8_DROGR_7222 and tr_D0Z795_D0Z795_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4JZN8_B4JZN8_DROGR_7222 and tr_A0A0Q9XG85_A0A0Q9XG85_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4JZN8_B4JZN8_DROGR_7222 and tr_A0A0M5J0P2_A0A0M5J0P2_DROBS_30019 are exactly identical! WARNING: Sequences tr_B8N1X4_B8N1X4_ASPFN_332952 and tr_A0A1S9DMU9_A0A1S9DMU9_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_Q4D6W8_Q4D6W8_TRYCC_353153 and tr_Q4DYB9_Q4DYB9_TRYCC_353153 are exactly identical! WARNING: Sequences tr_F9FR39_F9FR39_FUSOF_660025 and tr_A0A0D2X9M0_A0A0D2X9M0_FUSO4_426428 are exactly identical! WARNING: Sequences tr_F9FR39_F9FR39_FUSOF_660025 and tr_N4TPJ1_N4TPJ1_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9FR39_F9FR39_FUSOF_660025 and tr_A0A2H3ST12_A0A2H3ST12_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9FR39_F9FR39_FUSOF_660025 and tr_A0A2H3HVA0_A0A2H3HVA0_FUSOX_327505 are exactly identical! WARNING: Sequences tr_A0A0E0GLZ9_A0A0E0GLZ9_ORYNI_4536 and tr_A0A0E0D028_A0A0E0D028_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0GLZ9_A0A0E0GLZ9_ORYNI_4536 and tr_A0A0E0NUM2_A0A0E0NUM2_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0GLZ9_A0A0E0GLZ9_ORYNI_4536 and tr_A0A0D9Z6X0_A0A0D9Z6X0_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0GLZ9_A0A0E0GLZ9_ORYNI_4536 and tr_Q10LV1_Q10LV1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_F7FD93_F7FD93_MACMU_9544 and tr_A0A2K6DKJ5_A0A2K6DKJ5_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7H674_F7H674_MACMU_9544 and tr_A0A2K6C0E0_A0A2K6C0E0_MACNE_9545 are exactly identical! WARNING: Sequences tr_E5S318_E5S318_TRISP_6334 and tr_A0A0V0RL84_A0A0V0RL84_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5S318_E5S318_TRISP_6334 and tr_A0A0V0WNB5_A0A0V0WNB5_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5S318_E5S318_TRISP_6334 and tr_A0A0V1A9G1_A0A0V1A9G1_9BILA_990121 are exactly identical! WARNING: Sequences tr_Q7QEK3_Q7QEK3_ANOGA_7165 and tr_A0A084WF17_A0A084WF17_ANOSI_74873 are exactly identical! WARNING: Sequences tr_F6YQ17_F6YQ17_XENTR_8364 and tr_A0A1L8GRD5_A0A1L8GRD5_XENLA_8355 are exactly identical! WARNING: Sequences tr_G2YM86_G2YM86_BOTF4_999810 and tr_M7TZY1_M7TZY1_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_G1MEA7_G1MEA7_AILME_9646 and tr_F1MVF1_F1MVF1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_U3JX42_U3JX42_FICAL_59894 and tr_A0A218UWM8_A0A218UWM8_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3JZX5_U3JZX5_FICAL_59894 and tr_A0A0Q3XAF5_A0A0Q3XAF5_AMAAE_12930 are exactly identical! WARNING: Sequences tr_U3JZX5_U3JZX5_FICAL_59894 and tr_A0A2I0M9X4_A0A2I0M9X4_COLLI_8932 are exactly identical! WARNING: Sequences tr_U3JZX5_U3JZX5_FICAL_59894 and tr_A0A1V4KUU3_A0A1V4KUU3_PATFA_372326 are exactly identical! WARNING: Sequences tr_U3JZX5_U3JZX5_FICAL_59894 and tr_A0A218V0K2_A0A218V0K2_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3JZX5_U3JZX5_FICAL_59894 and tr_A0A226MWP9_A0A226MWP9_CALSU_9009 are exactly identical! WARNING: Sequences tr_U3JZX5_U3JZX5_FICAL_59894 and tr_A0A226P8W8_A0A226P8W8_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A151M7C2_A0A151M7C2_ALLMI_8496 and tr_A0A1U7RYB9_A0A1U7RYB9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A026WXP4_A0A026WXP4_OOCBI_2015173 and tr_A0A195DUP5_A0A195DUP5_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A093SEW6_A0A093SEW6_9PASS_328815 and tr_A0A091IM58_A0A091IM58_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091UIY7_A0A091UIY7_NIPNI_128390 and tr_A0A093HKB1_A0A093HKB1_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091UIY7_A0A091UIY7_NIPNI_128390 and tr_A0A099ZFX3_A0A099ZFX3_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091W9Y9_A0A091W9Y9_NIPNI_128390 and tr_A0A099YTY7_A0A099YTY7_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A0V0S1B4_A0A0V0S1B4_9BILA_6336 and tr_A0A0V1D1S3_A0A0V1D1S3_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0S1B4_A0A0V0S1B4_9BILA_6336 and tr_A0A0V0WTZ8_A0A0V0WTZ8_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0S1B4_A0A0V0S1B4_9BILA_6336 and tr_A0A0V0VT14_A0A0V0VT14_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0S1B4_A0A0V0S1B4_9BILA_6336 and tr_A0A0V1LIA5_A0A0V1LIA5_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0S1B4_A0A0V0S1B4_9BILA_6336 and tr_A0A0V0ZZD4_A0A0V0ZZD4_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0S1B4_A0A0V0S1B4_9BILA_6336 and tr_A0A0V1G1G0_A0A0V1G1G0_TRIPS_6337 are exactly identical! WARNING: Sequences tr_A0A0V0S1B4_A0A0V0S1B4_9BILA_6336 and tr_A0A0V1N479_A0A0V1N479_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V0S1B4_A0A0V0S1B4_9BILA_6336 and tr_A0A0V1NYS4_A0A0V1NYS4_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0S1B4_A0A0V0S1B4_9BILA_6336 and tr_A0A0V0UH07_A0A0V0UH07_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1D7J2_A0A0V1D7J2_TRIBR_45882 and tr_A0A0V0VI16_A0A0V0VI16_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1D7J2_A0A0V1D7J2_TRIBR_45882 and tr_A0A0V1NUL9_A0A0V1NUL9_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1D7J2_A0A0V1D7J2_TRIBR_45882 and tr_A0A0V0TJP0_A0A0V0TJP0_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0W3K1_A0A0V0W3K1_9BILA_92179 and tr_A0A0V0VTV7_A0A0V0VTV7_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0W3K1_A0A0V0W3K1_9BILA_92179 and tr_A0A0V1LHX8_A0A0V1LHX8_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0W3K1_A0A0V0W3K1_9BILA_92179 and tr_A0A0V0Z8H6_A0A0V0Z8H6_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0W3K1_A0A0V0W3K1_9BILA_92179 and tr_A0A0V1NKY3_A0A0V1NKY3_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0W3K1_A0A0V0W3K1_9BILA_92179 and tr_A0A0V0TN94_A0A0V0TN94_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0W6N5_A0A0V0W6N5_9BILA_92179 and tr_A0A0V1KYH2_A0A0V1KYH2_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0W6N5_A0A0V0W6N5_9BILA_92179 and tr_A0A0V1P738_A0A0V1P738_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0XXP2_A0A0V0XXP2_TRIPS_6337 and tr_A0A0V1MZA0_A0A0V1MZA0_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V0XXP2_A0A0V0XXP2_TRIPS_6337 and tr_A0A0V1HGV5_A0A0V1HGV5_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3X7Z3_A0A1S3X7Z3_TOBAC_4097 and tr_A0A1U7XDX8_A0A1U7XDX8_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3YT07_A0A1S3YT07_TOBAC_4097 and tr_A0A1U7W1I8_A0A1U7W1I8_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4DS19_A0A1S4DS19_TOBAC_4097 and tr_A0A1U7X9M5_A0A1U7X9M5_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3Q4F6_A0A1S3Q4F6_SALSA_8030 and tr_A0A060XRH3_A0A060XRH3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2D0QC44_A0A2D0QC44_ICTPU_7998 and tr_A0A2D0QDS2_A0A2D0QDS2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SKI3_A0A2D0SKI3_ICTPU_7998 and tr_A0A2D0SKI6_A0A2D0SKI6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5P066_A0A2K5P066_CERAT_9531 and tr_A0A2K5ZSQ5_A0A2K5ZSQ5_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2G4SGJ5_A0A2G4SGJ5_9FUNG_1340429 and tr_A0A367JE91_A0A367JE91_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A2U3ZG98_A0A2U3ZG98_ODORO_9708 and tr_A0A2U3Z3T6_A0A2U3Z3T6_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 82 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BXM7/4_raxmlng_ancestral/Q9BXM7.raxml.reduced.phy Alignment comprises 1 partitions and 581 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 581 Gaps: 47.19 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BXM7/4_raxmlng_ancestral/Q9BXM7.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BXM7/3_mltree/Q9BXM7.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 146 / 11680 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -250107.118954 [00:00:00 -250107.118954] Initial branch length optimization [00:00:01 -247491.328274] Model parameter optimization (eps = 0.100000) [00:01:41] Tree #1, final logLikelihood: -246717.179981 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.073082,0.268376) (0.134691,0.299044) (0.336088,0.833990) (0.456138,1.446520) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BXM7/4_raxmlng_ancestral/Q9BXM7.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BXM7/4_raxmlng_ancestral/Q9BXM7.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BXM7/4_raxmlng_ancestral/Q9BXM7.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BXM7/4_raxmlng_ancestral/Q9BXM7.raxml.log Analysis started: 03-Jun-2021 01:22:22 / finished: 03-Jun-2021 01:24:09 Elapsed time: 106.878 seconds Consumed energy: 8.302 Wh