RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 05-Jul-2021 18:38:35 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BV38/2_msa/Q9BV38_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BV38/3_mltree/Q9BV38 --seed 2 --threads 5 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BV38/2_msa/Q9BV38_trimmed_msa.fasta
[00:00:00] Loaded alignment with 439 taxa and 363 sites

WARNING: Sequences tr_B6HKZ2_B6HKZ2_PENRW_500485 and tr_A0A1V6Y4B3_A0A1V6Y4B3_PENNA_60175 are exactly identical!
WARNING: Sequences tr_Q29I40_Q29I40_DROPS_46245 and tr_B4H4L2_B4H4L2_DROPE_7234 are exactly identical!
WARNING: Sequences tr_F9F400_F9F400_FUSOF_660025 and tr_N4TU32_N4TU32_FUSC1_1229664 are exactly identical!
WARNING: Sequences tr_F9F400_F9F400_FUSOF_660025 and tr_X0BY14_X0BY14_FUSOX_1089458 are exactly identical!
WARNING: Sequences tr_F9F400_F9F400_FUSOF_660025 and tr_A0A2H3SSQ5_A0A2H3SSQ5_FUSOX_5507 are exactly identical!
WARNING: Sequences tr_F9F400_F9F400_FUSOF_660025 and tr_A0A2H3HUC6_A0A2H3HUC6_FUSOX_327505 are exactly identical!
WARNING: Sequences tr_E9EW86_E9EW86_METRA_655844 and tr_A0A0D9NY72_A0A0D9NY72_METAN_1291518 are exactly identical!
WARNING: Sequences tr_A0A0E0HZE8_A0A0E0HZE8_ORYNI_4536 and tr_A0A0D3GPY6_A0A0D3GPY6_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_A0A0E0HZE8_A0A0E0HZE8_ORYNI_4536 and tr_A0A0E0AIM8_A0A0E0AIM8_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_H9EQY7_H9EQY7_MACMU_9544 and tr_G7PY96_G7PY96_MACFA_9541 are exactly identical!
WARNING: Sequences tr_H9EQY7_H9EQY7_MACMU_9544 and tr_A0A0D9RJC3_A0A0D9RJC3_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_H9EQY7_H9EQY7_MACMU_9544 and tr_A0A2K6CW36_A0A2K6CW36_MACNE_9545 are exactly identical!
WARNING: Sequences tr_M4F625_M4F625_BRARP_51351 and tr_A0A078G310_A0A078G310_BRANA_3708 are exactly identical!
WARNING: Sequences tr_M4F625_M4F625_BRARP_51351 and tr_A0A0D3E1E1_A0A0D3E1E1_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_W2RB07_W2RB07_PHYPN_761204 and tr_W2L3A7_W2L3A7_PHYPR_4792 are exactly identical!
WARNING: Sequences tr_A0A067GZN1_A0A067GZN1_CITSI_2711 and tr_A0A2H5NH83_A0A2H5NH83_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A1S4CDQ6_A0A1S4CDQ6_TOBAC_4097 and tr_A0A1U7XVM8_A0A1U7XVM8_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A226N243_A0A226N243_CALSU_9009 and tr_A0A226NSV0_A0A226NSV0_COLVI_9014 are exactly identical!
WARNING: Duplicate sequences found: 18

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BV38/3_mltree/Q9BV38.raxml.reduced.phy

Alignment comprises 1 partitions and 363 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 363 / 363
Gaps: 11.86 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BV38/3_mltree/Q9BV38.raxml.rba

Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 439 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 363 / 29040
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -312654.188985] Initial branch length optimization
[00:00:04 -257184.005183] Model parameter optimization (eps = 10.000000)
[00:00:34 -255497.532142] AUTODETECT spr round 1 (radius: 5)
[00:01:40 -198974.226596] AUTODETECT spr round 2 (radius: 10)
[00:03:00 -156012.241384] AUTODETECT spr round 3 (radius: 15)
[00:04:43 -129499.000664] AUTODETECT spr round 4 (radius: 20)
[00:06:36 -123944.511574] AUTODETECT spr round 5 (radius: 25)
[00:08:54 -123801.736642] SPR radius for FAST iterations: 25 (autodetect)
[00:08:54 -123801.736642] Model parameter optimization (eps = 3.000000)
[00:09:12 -123716.022265] FAST spr round 1 (radius: 25)
[00:10:54 -112244.572522] FAST spr round 2 (radius: 25)
[00:12:10 -111833.672134] FAST spr round 3 (radius: 25)
[00:13:11 -111810.942922] FAST spr round 4 (radius: 25)
[00:14:01 -111810.413002] FAST spr round 5 (radius: 25)
[00:14:49 -111810.412985] Model parameter optimization (eps = 1.000000)
[00:15:02 -111807.204561] SLOW spr round 1 (radius: 5)
[00:16:33 -111768.851528] SLOW spr round 2 (radius: 5)
[00:17:56 -111767.713760] SLOW spr round 3 (radius: 5)
[00:19:17 -111767.713704] SLOW spr round 4 (radius: 10)
[00:20:38 -111764.863715] SLOW spr round 5 (radius: 5)
[00:22:25 -111764.863272] SLOW spr round 6 (radius: 10)
[00:24:00 -111763.138617] SLOW spr round 7 (radius: 5)
[00:25:47 -111762.513053] SLOW spr round 8 (radius: 5)
[00:27:17 -111762.511987] SLOW spr round 9 (radius: 10)
[00:28:42 -111762.511917] SLOW spr round 10 (radius: 15)
[00:30:19] [worker #1] ML tree search #2, logLikelihood: -111758.254682
[00:31:10 -111762.511911] SLOW spr round 11 (radius: 20)
[00:34:25 -111762.511910] SLOW spr round 12 (radius: 25)
[00:36:13] [worker #4] ML tree search #5, logLikelihood: -111756.993577
[00:37:25] [worker #3] ML tree search #4, logLikelihood: -111760.186688
[00:37:25] [worker #2] ML tree search #3, logLikelihood: -111754.879115
[00:38:21 -111762.511910] Model parameter optimization (eps = 0.100000)

[00:38:25] [worker #0] ML tree search #1, logLikelihood: -111762.498934

[00:38:25 -316784.050553] Initial branch length optimization
[00:38:29 -260712.822450] Model parameter optimization (eps = 10.000000)
[00:39:15 -258852.016799] AUTODETECT spr round 1 (radius: 5)
[00:40:20 -196299.182956] AUTODETECT spr round 2 (radius: 10)
[00:41:41 -151220.938590] AUTODETECT spr round 3 (radius: 15)
[00:43:14 -133958.915274] AUTODETECT spr round 4 (radius: 20)
[00:44:57 -128132.164722] AUTODETECT spr round 5 (radius: 25)
[00:46:56 -126179.665356] SPR radius for FAST iterations: 25 (autodetect)
[00:46:56 -126179.665356] Model parameter optimization (eps = 3.000000)
[00:47:14 -126044.282565] FAST spr round 1 (radius: 25)
[00:48:50 -112200.055378] FAST spr round 2 (radius: 25)
[00:50:01 -111834.424836] FAST spr round 3 (radius: 25)
[00:51:01 -111800.026472] FAST spr round 4 (radius: 25)
[00:51:52 -111799.589886] FAST spr round 5 (radius: 25)
[00:52:40 -111799.588575] Model parameter optimization (eps = 1.000000)
[00:52:54 -111795.392894] SLOW spr round 1 (radius: 5)
[00:54:31 -111768.564994] SLOW spr round 2 (radius: 5)
[00:55:55 -111768.256759] SLOW spr round 3 (radius: 5)
[00:57:15 -111768.256572] SLOW spr round 4 (radius: 10)
[00:58:38 -111762.475502] SLOW spr round 5 (radius: 5)
[01:00:01] [worker #1] ML tree search #7, logLikelihood: -111764.930858
[01:00:25 -111761.563865] SLOW spr round 6 (radius: 5)
[01:01:57 -111761.554557] SLOW spr round 7 (radius: 10)
[01:03:22 -111761.554516] SLOW spr round 8 (radius: 15)
[01:05:50 -111761.554512] SLOW spr round 9 (radius: 20)
[01:09:05 -111761.554510] SLOW spr round 10 (radius: 25)
[01:12:36] [worker #2] ML tree search #8, logLikelihood: -111761.700539
[01:12:58 -111761.554508] Model parameter optimization (eps = 0.100000)

[01:13:09] [worker #0] ML tree search #6, logLikelihood: -111760.574514

[01:13:09 -317928.412449] Initial branch length optimization
[01:13:13 -262017.701631] Model parameter optimization (eps = 10.000000)
[01:13:49 -260135.866515] AUTODETECT spr round 1 (radius: 5)
[01:14:41] [worker #3] ML tree search #9, logLikelihood: -111756.647090
[01:14:57 -192453.728324] AUTODETECT spr round 2 (radius: 10)
[01:16:16 -150816.847528] AUTODETECT spr round 3 (radius: 15)
[01:16:39] [worker #4] ML tree search #10, logLikelihood: -111763.816086
[01:17:59 -125722.910704] AUTODETECT spr round 4 (radius: 20)
[01:19:50 -122926.826176] AUTODETECT spr round 5 (radius: 25)
[01:21:57 -122785.888431] SPR radius for FAST iterations: 25 (autodetect)
[01:21:57 -122785.888431] Model parameter optimization (eps = 3.000000)
[01:22:19 -122644.792865] FAST spr round 1 (radius: 25)
[01:24:01 -112207.199996] FAST spr round 2 (radius: 25)
[01:25:11 -111832.525092] FAST spr round 3 (radius: 25)
[01:26:11 -111818.789864] FAST spr round 4 (radius: 25)
[01:27:07 -111814.580814] FAST spr round 5 (radius: 25)
[01:27:58 -111813.132403] FAST spr round 6 (radius: 25)
[01:28:45 -111813.132095] Model parameter optimization (eps = 1.000000)
[01:28:59 -111803.078092] SLOW spr round 1 (radius: 5)
[01:30:30 -111765.415413] SLOW spr round 2 (radius: 5)
[01:31:55 -111763.933488] SLOW spr round 3 (radius: 5)
[01:33:15 -111763.933432] SLOW spr round 4 (radius: 10)
[01:34:36 -111760.166636] SLOW spr round 5 (radius: 5)
[01:36:23 -111760.165474] SLOW spr round 6 (radius: 10)
[01:37:59 -111758.485675] SLOW spr round 7 (radius: 5)
[01:39:43 -111758.481219] SLOW spr round 8 (radius: 10)
[01:40:52] [worker #1] ML tree search #12, logLikelihood: -111757.592742
[01:41:15 -111758.480723] SLOW spr round 9 (radius: 15)
[01:43:36 -111758.480582] SLOW spr round 10 (radius: 20)
[01:46:51 -111758.480498] SLOW spr round 11 (radius: 25)
[01:49:35] [worker #2] ML tree search #13, logLikelihood: -111758.885594
[01:50:44 -111758.480437] Model parameter optimization (eps = 0.100000)

[01:50:56] [worker #0] ML tree search #11, logLikelihood: -111757.778165

[01:50:56 -315699.224278] Initial branch length optimization
[01:51:00 -258934.044332] Model parameter optimization (eps = 10.000000)
[01:51:49 -257338.257602] AUTODETECT spr round 1 (radius: 5)
[01:52:39] [worker #4] ML tree search #15, logLikelihood: -111763.251614
[01:52:54 -196816.350205] AUTODETECT spr round 2 (radius: 10)
[01:54:13 -157002.023697] AUTODETECT spr round 3 (radius: 15)
[01:55:56 -129818.308748] AUTODETECT spr round 4 (radius: 20)
[01:56:21] [worker #3] ML tree search #14, logLikelihood: -111760.875918
[01:58:06 -125302.818855] AUTODETECT spr round 5 (radius: 25)
[02:00:32 -125047.832785] SPR radius for FAST iterations: 25 (autodetect)
[02:00:32 -125047.832785] Model parameter optimization (eps = 3.000000)
[02:00:52 -124921.260061] FAST spr round 1 (radius: 25)
[02:02:27 -112874.573091] FAST spr round 2 (radius: 25)
[02:03:43 -111888.641075] FAST spr round 3 (radius: 25)
[02:04:49 -111827.244858] FAST spr round 4 (radius: 25)
[02:05:39 -111827.243668] Model parameter optimization (eps = 1.000000)
[02:05:54 -111815.210010] SLOW spr round 1 (radius: 5)
[02:07:31 -111775.610392] SLOW spr round 2 (radius: 5)
[02:08:58 -111770.600203] SLOW spr round 3 (radius: 5)
[02:10:19 -111770.599674] SLOW spr round 4 (radius: 10)
[02:11:39 -111770.599663] SLOW spr round 5 (radius: 15)
[02:14:13 -111770.599662] SLOW spr round 6 (radius: 20)
[02:17:25 -111770.599662] SLOW spr round 7 (radius: 25)
[02:18:38] [worker #1] ML tree search #17, logLikelihood: -111755.994888
[02:21:09 -111770.599662] Model parameter optimization (eps = 0.100000)

[02:21:15] [worker #0] ML tree search #16, logLikelihood: -111770.522033

[02:21:47] [worker #2] ML tree search #18, logLikelihood: -111758.191057
[02:37:55] [worker #3] ML tree search #19, logLikelihood: -111759.928129
[02:42:31] [worker #4] ML tree search #20, logLikelihood: -111757.787657

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.111423,0.538828) (0.188106,0.646178) (0.432616,0.854532) (0.267855,1.675262) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -111754.879115

AIC score: 225271.758230 / AICc score: 1779355.758230 / BIC score: 228702.727127
Free parameters (model + branch lengths): 881

WARNING: Number of free parameters (K=881) is larger than alignment size (n=363).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BV38/3_mltree/Q9BV38.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BV38/3_mltree/Q9BV38.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BV38/3_mltree/Q9BV38.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q9BV38/3_mltree/Q9BV38.raxml.log

Analysis started: 05-Jul-2021 18:38:35 / finished: 05-Jul-2021 21:21:07

Elapsed time: 9752.034 seconds