RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 06-Jul-2021 15:39:10 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9BTC0/2_msa/Q9BTC0_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9BTC0/3_mltree/Q9BTC0 --seed 2 --threads 1 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), NONE/sequential

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9BTC0/2_msa/Q9BTC0_trimmed_msa.fasta
[00:00:00] Loaded alignment with 724 taxa and 59 sites

WARNING: Sequences tr_B4QWJ8_B4QWJ8_DROSI_7240 and tr_B4HJX4_B4HJX4_DROSE_7238 are exactly identical!
WARNING: Sequences tr_A0A1D5NXL6_A0A1D5NXL6_CHICK_9031 and tr_G1NM79_G1NM79_MELGA_9103 are exactly identical!
WARNING: Sequences tr_A0A1D5NXL6_A0A1D5NXL6_CHICK_9031 and tr_A0A091J8T4_A0A091J8T4_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_A0A1D5NXL6_A0A1D5NXL6_CHICK_9031 and tr_A0A087R2Z0_A0A087R2Z0_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A1D5NXL6_A0A1D5NXL6_CHICK_9031 and tr_A0A0A0AHC9_A0A0A0AHC9_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A1D5P7D3_A0A1D5P7D3_CHICK_9031 and tr_H0ZZR2_H0ZZR2_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_F1NGH4_F1NGH4_CHICK_9031 and tr_U3ICQ0_U3ICQ0_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_F1NGH4_F1NGH4_CHICK_9031 and tr_A0A226NK40_A0A226NK40_CALSU_9009 are exactly identical!
WARNING: Sequences tr_F1NGH4_F1NGH4_CHICK_9031 and tr_A0A226PG20_A0A226PG20_COLVI_9014 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_G1PJ84_G1PJ84_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_D3ZKI5_D3ZKI5_RAT_10116 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_I3MYS1_I3MYS1_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_G3RTI5_G3RTI5_GORGO_9595 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_H2P2K1_H2P2K1_PONAB_9601 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_K7DQ90_K7DQ90_PANTR_9598 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_F7BUQ9_F7BUQ9_HORSE_9796 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_D3ZWL9_D3ZWL9_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_I3MIY7_I3MIY7_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_H0X9W8_H0X9W8_OTOGA_30611 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and sp_Q9BTC0_DIDO1_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_F6S3Q3_F6S3Q3_MACMU_9544 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_A0A096NN91_A0A096NN91_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_A0A0D9RUJ1_A0A0D9RUJ1_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_A0A151NYX1_A0A151NYX1_ALLMI_8496 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_A0A1S3GAV2_A0A1S3GAV2_DIPOR_10020 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_A0A1U7RKF9_A0A1U7RKF9_ALLSI_38654 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_A0A1U8C120_A0A1U8C120_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_A0A2K5LXP4_A0A2K5LXP4_CERAT_9531 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_A0A2K6CM38_A0A2K6CM38_MACNE_9545 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_A0A2K5YXH5_A0A2K5YXH5_MANLE_9568 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_A0A2R9B5R6_A0A2R9B5R6_PANPA_9597 are exactly identical!
WARNING: Sequences tr_M3XVK0_M3XVK0_MUSPF_9669 and tr_E2R727_E2R727_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3XVK0_M3XVK0_MUSPF_9669 and tr_A0A2U3ZYG6_A0A2U3ZYG6_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3XVK0_M3XVK0_MUSPF_9669 and tr_A0A2U3YVR0_A0A2U3YVR0_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_M3XVK0_M3XVK0_MUSPF_9669 and tr_A0A384BLP4_A0A384BLP4_URSMA_29073 are exactly identical!
WARNING: Sequences tr_G1PUG8_G1PUG8_MYOLU_59463 and tr_A0A093G6V4_A0A093G6V4_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_G1PUG8_G1PUG8_MYOLU_59463 and tr_A0A091I980_A0A091I980_CALAN_9244 are exactly identical!
WARNING: Sequences tr_G1PUG8_G1PUG8_MYOLU_59463 and tr_A0A1V4KKB7_A0A1V4KKB7_PATFA_372326 are exactly identical!
WARNING: Sequences tr_J3KBZ4_J3KBZ4_COCIM_246410 and tr_A0A0J7BCZ0_A0A0J7BCZ0_COCIT_404692 are exactly identical!
WARNING: Sequences tr_B6Q628_B6Q628_TALMQ_441960 and tr_A0A093XZR3_A0A093XZR3_TALMA_1077442 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_H2R1J9_H2R1J9_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_W5PS42_W5PS42_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_H0WTL9_H0WTL9_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and sp_Q92576_PHF3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_F7H0T5_F7H0T5_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_G3TBS6_G3TBS6_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_A0A287B6Q0_A0A287B6Q0_PIG_9823 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_G8F484_G8F484_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_G5E5M1_G5E5M1_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_L5JPV4_L5JPV4_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_A0A096MVY7_A0A096MVY7_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_A0A0D9RM23_A0A0D9RM23_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_A0A1S3WVI6_A0A1S3WVI6_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_A0A1U7TF02_A0A1U7TF02_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_A0A3Q0DCR7_A0A3Q0DCR7_MESAU_10036 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_A0A2K5NAZ2_A0A2K5NAZ2_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_A0A2K6D6S6_A0A2K6D6S6_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_A0A2K5ZPI8_A0A2K5ZPI8_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_A0A2R8ZVE0_A0A2R8ZVE0_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_A0A2U4AV19_A0A2U4AV19_TURTR_9739 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_A0A2Y9R866_A0A2Y9R866_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_A0A2Y9MJM5_A0A2Y9MJM5_DELLE_9749 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_A0A2Y9TJC0_A0A2Y9TJC0_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_G3QY21_G3QY21_GORGO_9595 and tr_A0A383ZVW9_A0A383ZVW9_BALAS_310752 are exactly identical!
WARNING: Sequences tr_G1N317_G1N317_MELGA_9103 and tr_F1PLS2_F1PLS2_CANLF_9615 are exactly identical!
WARNING: Sequences tr_G1N317_G1N317_MELGA_9103 and tr_H0ZB71_H0ZB71_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_G1N317_G1N317_MELGA_9103 and tr_G1MG30_G1MG30_AILME_9646 are exactly identical!
WARNING: Sequences tr_G1N317_G1N317_MELGA_9103 and tr_L5JYL9_L5JYL9_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_G1N317_G1N317_MELGA_9103 and tr_U3K7D6_U3K7D6_FICAL_59894 are exactly identical!
WARNING: Sequences tr_G1N317_G1N317_MELGA_9103 and tr_A0A087QRR4_A0A087QRR4_APTFO_9233 are exactly identical!
WARNING: Sequences tr_G1N317_G1N317_MELGA_9103 and tr_A0A099Z5G7_A0A099Z5G7_TINGU_94827 are exactly identical!
WARNING: Sequences tr_G1N317_G1N317_MELGA_9103 and tr_A0A0A0B1K4_A0A0A0B1K4_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_G1N317_G1N317_MELGA_9103 and tr_A0A218UZE1_A0A218UZE1_9PASE_299123 are exactly identical!
WARNING: Sequences tr_G1N317_G1N317_MELGA_9103 and tr_A0A384BV03_A0A384BV03_URSMA_29073 are exactly identical!
WARNING: Sequences tr_B8N1I5_B8N1I5_ASPFN_332952 and tr_A0A0F0IEC1_A0A0F0IEC1_ASPPU_1403190 are exactly identical!
WARNING: Sequences tr_B8N1I5_B8N1I5_ASPFN_332952 and tr_A0A1S9DML7_A0A1S9DML7_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_B8N1I5_B8N1I5_ASPFN_332952 and tr_A0A2G7G0A1_A0A2G7G0A1_9EURO_656916 are exactly identical!
WARNING: Sequences tr_A0A179UQS9_A0A179UQS9_BLAGS_559298 and tr_C5GA01_C5GA01_AJEDR_559297 are exactly identical!
WARNING: Sequences tr_H2QVH5_H2QVH5_PANTR_9598 and sp_Q6ZMT4_KDM7A_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_F6R2K2_F6R2K2_MONDO_13616 and tr_G3SWP5_G3SWP5_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_F6R2K2_F6R2K2_MONDO_13616 and tr_G3W6X4_G3W6X4_SARHA_9305 are exactly identical!
WARNING: Sequences tr_F6R2K2_F6R2K2_MONDO_13616 and tr_A0A1U7UR10_A0A1U7UR10_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_F6R2K2_F6R2K2_MONDO_13616 and tr_A0A2Y9RUV0_A0A2Y9RUV0_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_E9EQ08_E9EQ08_METRA_655844 and tr_A0A0B4IF16_A0A0B4IF16_METMF_1276143 are exactly identical!
WARNING: Sequences tr_E9F834_E9F834_METRA_655844 and tr_A0A0B4HZ11_A0A0B4HZ11_METMF_1276143 are exactly identical!
WARNING: Sequences tr_E9F834_E9F834_METRA_655844 and tr_A0A0D9NRA6_A0A0D9NRA6_METAN_1291518 are exactly identical!
WARNING: Sequences tr_A0A3B5Q3B3_A0A3B5Q3B3_XIPMA_8083 and tr_A0A087Y1B0_A0A087Y1B0_POEFO_48698 are exactly identical!
WARNING: Sequences tr_M4A630_M4A630_XIPMA_8083 and tr_A0A087XKG9_A0A087XKG9_POEFO_48698 are exactly identical!
WARNING: Sequences tr_M4A6G2_M4A6G2_XIPMA_8083 and tr_A0A096M2H0_A0A096M2H0_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A088A701_A0A088A701_APIME_7460 and tr_A0A2A3E2V4_A0A2A3E2V4_APICC_94128 are exactly identical!
WARNING: Sequences tr_H0V463_H0V463_CAVPO_10141 and tr_A0A091E456_A0A091E456_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_G7XPY0_G7XPY0_ASPKW_1033177 and tr_A0A146FCA3_A0A146FCA3_9EURO_1069201 are exactly identical!
WARNING: Sequences tr_H0ZRB1_H0ZRB1_TAEGU_59729 and tr_U3JG37_U3JG37_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H0ZRB1_H0ZRB1_TAEGU_59729 and tr_A0A093Q3H1_A0A093Q3H1_9PASS_328815 are exactly identical!
WARNING: Sequences tr_H0ZRB1_H0ZRB1_TAEGU_59729 and tr_A0A218UTZ2_A0A218UTZ2_9PASE_299123 are exactly identical!
WARNING: Sequences tr_A0A1B8XZQ4_A0A1B8XZQ4_XENTR_8364 and tr_F6SKJ4_F6SKJ4_XENTR_8364 are exactly identical!
WARNING: Sequences tr_F6PNQ4_F6PNQ4_CALJA_9483 and tr_M3WWN0_M3WWN0_FELCA_9685 are exactly identical!
WARNING: Sequences tr_F6PNQ4_F6PNQ4_CALJA_9483 and tr_A0A0D9R7E0_A0A0D9R7E0_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F6PNQ4_F6PNQ4_CALJA_9483 and tr_A0A2U3V246_A0A2U3V246_TURTR_9739 are exactly identical!
WARNING: Sequences tr_F6PNQ4_F6PNQ4_CALJA_9483 and tr_A0A2U3WXB4_A0A2U3WXB4_ODORO_9708 are exactly identical!
WARNING: Sequences tr_F6PNQ4_F6PNQ4_CALJA_9483 and tr_A0A2Y9NK72_A0A2Y9NK72_DELLE_9749 are exactly identical!
WARNING: Sequences tr_F6PNQ4_F6PNQ4_CALJA_9483 and tr_A0A2Y9T1H3_A0A2Y9T1H3_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_D2HTS9_D2HTS9_AILME_9646 and tr_A0A2I2UYR6_A0A2I2UYR6_FELCA_9685 are exactly identical!
WARNING: Sequences tr_M2SUH2_M2SUH2_COCSN_665912 and tr_W6Y984_W6Y984_COCCA_930089 are exactly identical!
WARNING: Sequences tr_M2SUH2_M2SUH2_COCSN_665912 and tr_W6YMA9_W6YMA9_COCMI_930090 are exactly identical!
WARNING: Sequences tr_A0A015L464_A0A015L464_9GLOM_1432141 and tr_A0A2H5TBY7_A0A2H5TBY7_RHIID_747089 are exactly identical!
WARNING: Sequences tr_A0A067FIN3_A0A067FIN3_CITSI_2711 and tr_V4SBH0_V4SBH0_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_A0A067FIN3_A0A067FIN3_CITSI_2711 and tr_A0A2H5Q2K6_A0A2H5Q2K6_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A2I3N227_A0A2I3N227_PAPAN_9555 and tr_A0A2K6B8Y4_A0A2K6B8Y4_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A0G0AE59_A0A0G0AE59_TRIHA_5544 and tr_A0A2T4A654_A0A2T4A654_TRIHA_983964 are exactly identical!
WARNING: Sequences tr_A0A0F8WVE0_A0A0F8WVE0_9EURO_308745 and tr_A0A2T5LYI5_A0A2T5LYI5_9EURO_1392256 are exactly identical!
WARNING: Sequences tr_A0A194QTS0_A0A194QTS0_PAPMA_76193 and tr_A0A194PQF3_A0A194PQF3_PAPXU_66420 are exactly identical!
WARNING: Sequences tr_A0A2I0MU88_A0A2I0MU88_COLLI_8932 and tr_A0A091IGP1_A0A091IGP1_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A101MP06_A0A101MP06_9EURO_48697 and tr_A0A1V6P1M0_A0A1V6P1M0_9EURO_60169 are exactly identical!
WARNING: Sequences tr_A0A195DQI3_A0A195DQI3_9HYME_471704 and tr_A0A195EWL9_A0A195EWL9_9HYME_34720 are exactly identical!
WARNING: Sequences tr_A0A1S4B7A7_A0A1S4B7A7_TOBAC_4097 and tr_A0A1U7XYS9_A0A1U7XYS9_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S4CC81_A0A1S4CC81_TOBAC_4097 and tr_A0A1J6IKT9_A0A1J6IKT9_NICAT_49451 are exactly identical!
WARNING: Sequences tr_A0A1S3IPM4_A0A1S3IPM4_LINUN_7574 and tr_A0A1S3JU59_A0A1S3JU59_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3LCX8_A0A1S3LCX8_SALSA_8030 and tr_A0A1S3P2Y7_A0A1S3P2Y7_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3LCX8_A0A1S3LCX8_SALSA_8030 and tr_A0A060W8F5_A0A060W8F5_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3LCX8_A0A1S3LCX8_SALSA_8030 and tr_A0A060X064_A0A060X064_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1R1X1Z6_A0A1R1X1Z6_9FUNG_133412 and tr_A0A1R1X5E8_A0A1R1X5E8_9FUNG_133412 are exactly identical!
WARNING: Sequences tr_A0A1Q3AUP2_A0A1Q3AUP2_CEPFO_3775 and tr_A0A1Q3D2D9_A0A1Q3D2D9_CEPFO_3775 are exactly identical!
WARNING: Sequences tr_A0A2U4C469_A0A2U4C469_TURTR_9739 and tr_A0A2Y9Q763_A0A2Y9Q763_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4C469_A0A2U4C469_TURTR_9739 and tr_A0A384ADB0_A0A384ADB0_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A0A319BYW5_A0A319BYW5_9EURO_1448315 and tr_A0A2V5JCD0_A0A2V5JCD0_9EURO_1450541 are exactly identical!
WARNING: Sequences tr_A0A319BYW5_A0A319BYW5_9EURO_1448315 and tr_A0A2V5GTC4_A0A2V5GTC4_9EURO_1450538 are exactly identical!
WARNING: Duplicate sequences found: 127

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9BTC0/3_mltree/Q9BTC0.raxml.reduced.phy

Alignment comprises 1 partitions and 59 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 59 / 59
Gaps: 14.00 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9BTC0/3_mltree/Q9BTC0.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 724 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 59 / 4720
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -83364.835524] Initial branch length optimization
[00:00:01 -67034.897310] Model parameter optimization (eps = 10.000000)
[00:00:13 -66636.833287] AUTODETECT spr round 1 (radius: 5)
[00:00:50 -54234.771449] AUTODETECT spr round 2 (radius: 10)
[00:01:33 -44502.436146] AUTODETECT spr round 3 (radius: 15)
[00:02:20 -40076.814742] AUTODETECT spr round 4 (radius: 20)
[00:03:13 -35904.803178] AUTODETECT spr round 5 (radius: 25)
[00:04:16 -33207.873398] SPR radius for FAST iterations: 25 (autodetect)
[00:04:16 -33207.873398] Model parameter optimization (eps = 3.000000)
[00:04:24 -33151.470931] FAST spr round 1 (radius: 25)
[00:05:15 -28285.830380] FAST spr round 2 (radius: 25)
[00:05:57 -27974.237380] FAST spr round 3 (radius: 25)
[00:06:35 -27932.039931] FAST spr round 4 (radius: 25)
[00:07:11 -27921.634368] FAST spr round 5 (radius: 25)
[00:07:44 -27920.042941] FAST spr round 6 (radius: 25)
[00:08:16 -27920.040898] Model parameter optimization (eps = 1.000000)
[00:08:20 -27915.067253] SLOW spr round 1 (radius: 5)
[00:09:02 -27904.454895] SLOW spr round 2 (radius: 5)
[00:09:42 -27900.572431] SLOW spr round 3 (radius: 5)
[00:10:22 -27895.991417] SLOW spr round 4 (radius: 5)
[00:11:03 -27893.444955] SLOW spr round 5 (radius: 5)
[00:11:42 -27893.444619] SLOW spr round 6 (radius: 10)
[00:12:23 -27893.344512] SLOW spr round 7 (radius: 5)
[00:13:10 -27893.344488] SLOW spr round 8 (radius: 10)
[00:13:56 -27893.344482] SLOW spr round 9 (radius: 15)
[00:14:54 -27893.344478] SLOW spr round 10 (radius: 20)
[00:16:05 -27893.344470] SLOW spr round 11 (radius: 25)
[00:17:31 -27887.300118] SLOW spr round 12 (radius: 5)
[00:18:24 -27883.022259] SLOW spr round 13 (radius: 5)
[00:19:10 -27882.644835] SLOW spr round 14 (radius: 5)
[00:19:52 -27882.643866] SLOW spr round 15 (radius: 10)
[00:20:35 -27882.141448] SLOW spr round 16 (radius: 5)
[00:21:23 -27881.696595] SLOW spr round 17 (radius: 5)
[00:22:07 -27881.536377] SLOW spr round 18 (radius: 5)
[00:22:49 -27881.536106] SLOW spr round 19 (radius: 10)
[00:23:30 -27881.536096] SLOW spr round 20 (radius: 15)
[00:24:29 -27881.052158] SLOW spr round 21 (radius: 5)
[00:25:19 -27881.051512] SLOW spr round 22 (radius: 10)
[00:26:06 -27881.051497] SLOW spr round 23 (radius: 15)
[00:27:02 -27881.051495] SLOW spr round 24 (radius: 20)
[00:28:11 -27881.051494] SLOW spr round 25 (radius: 25)
[00:29:36 -27881.051494] Model parameter optimization (eps = 0.100000)

[00:29:38] ML tree search #1, logLikelihood: -27880.988564

[00:29:38 -83345.936812] Initial branch length optimization
[00:29:39 -67108.972269] Model parameter optimization (eps = 10.000000)
[00:29:50 -66700.856974] AUTODETECT spr round 1 (radius: 5)
[00:30:27 -53511.773175] AUTODETECT spr round 2 (radius: 10)
[00:31:10 -43118.829193] AUTODETECT spr round 3 (radius: 15)
[00:31:57 -37577.859268] AUTODETECT spr round 4 (radius: 20)
[00:32:48 -35033.337006] AUTODETECT spr round 5 (radius: 25)
[00:33:45 -33866.285629] SPR radius for FAST iterations: 25 (autodetect)
[00:33:45 -33866.285629] Model parameter optimization (eps = 3.000000)
[00:33:56 -33799.717961] FAST spr round 1 (radius: 25)
[00:34:52 -28621.554501] FAST spr round 2 (radius: 25)
[00:35:35 -28153.165952] FAST spr round 3 (radius: 25)
[00:36:13 -27984.528102] FAST spr round 4 (radius: 25)
[00:36:49 -27915.642952] FAST spr round 5 (radius: 25)
[00:37:22 -27914.716664] FAST spr round 6 (radius: 25)
[00:37:54 -27914.715798] Model parameter optimization (eps = 1.000000)
[00:38:00 -27911.522795] SLOW spr round 1 (radius: 5)
[00:38:40 -27905.439964] SLOW spr round 2 (radius: 5)
[00:39:20 -27905.381567] SLOW spr round 3 (radius: 10)
[00:40:03 -27904.932252] SLOW spr round 4 (radius: 5)
[00:40:51 -27901.352594] SLOW spr round 5 (radius: 5)
[00:41:35 -27901.231733] SLOW spr round 6 (radius: 5)
[00:42:16 -27901.231614] SLOW spr round 7 (radius: 10)
[00:42:58 -27901.231561] SLOW spr round 8 (radius: 15)
[00:43:58 -27899.211519] SLOW spr round 9 (radius: 5)
[00:44:48 -27898.493977] SLOW spr round 10 (radius: 5)
[00:45:33 -27898.489709] SLOW spr round 11 (radius: 10)
[00:46:16 -27898.487606] SLOW spr round 12 (radius: 15)
[00:47:15 -27898.047802] SLOW spr round 13 (radius: 5)
[00:48:04 -27898.046450] SLOW spr round 14 (radius: 10)
[00:48:51 -27898.046072] SLOW spr round 15 (radius: 15)
[00:49:49 -27898.045969] SLOW spr round 16 (radius: 20)
[00:51:06 -27898.045925] SLOW spr round 17 (radius: 25)
[00:52:40 -27896.781132] SLOW spr round 18 (radius: 5)
[00:53:31 -27896.292810] SLOW spr round 19 (radius: 5)
[00:54:17 -27896.166801] SLOW spr round 20 (radius: 5)
[00:54:59 -27896.164743] SLOW spr round 21 (radius: 10)
[00:55:41 -27896.164545] SLOW spr round 22 (radius: 15)
[00:56:40 -27896.164505] SLOW spr round 23 (radius: 20)
[00:57:55 -27896.164477] SLOW spr round 24 (radius: 25)
[00:59:29 -27896.164450] Model parameter optimization (eps = 0.100000)

[00:59:33] ML tree search #2, logLikelihood: -27895.987061

[00:59:33 -83718.635273] Initial branch length optimization
[00:59:34 -67588.263998] Model parameter optimization (eps = 10.000000)
[00:59:47 -67176.954206] AUTODETECT spr round 1 (radius: 5)
[01:00:25 -52889.792862] AUTODETECT spr round 2 (radius: 10)
[01:01:08 -43628.326403] AUTODETECT spr round 3 (radius: 15)
[01:01:56 -36492.049903] AUTODETECT spr round 4 (radius: 20)
[01:02:51 -34153.630449] AUTODETECT spr round 5 (radius: 25)
[01:03:55 -33450.782974] SPR radius for FAST iterations: 25 (autodetect)
[01:03:55 -33450.782974] Model parameter optimization (eps = 3.000000)
[01:04:03 -33377.020668] FAST spr round 1 (radius: 25)
[01:04:58 -29009.715378] FAST spr round 2 (radius: 25)
[01:05:40 -28217.508151] FAST spr round 3 (radius: 25)
[01:06:20 -27965.978758] FAST spr round 4 (radius: 25)
[01:06:57 -27948.820300] FAST spr round 5 (radius: 25)
[01:07:30 -27946.399249] FAST spr round 6 (radius: 25)
[01:08:04 -27946.398480] Model parameter optimization (eps = 1.000000)
[01:08:08 -27940.497356] SLOW spr round 1 (radius: 5)
[01:08:49 -27930.236388] SLOW spr round 2 (radius: 5)
[01:09:30 -27928.154204] SLOW spr round 3 (radius: 5)
[01:10:09 -27927.547334] SLOW spr round 4 (radius: 5)
[01:10:49 -27927.545998] SLOW spr round 5 (radius: 10)
[01:11:30 -27926.232450] SLOW spr round 6 (radius: 5)
[01:12:18 -27926.232195] SLOW spr round 7 (radius: 10)
[01:13:04 -27926.232173] SLOW spr round 8 (radius: 15)
[01:14:02 -27926.232135] SLOW spr round 9 (radius: 20)
[01:15:13 -27926.232134] SLOW spr round 10 (radius: 25)
[01:16:36 -27925.307460] SLOW spr round 11 (radius: 5)
[01:17:27 -27925.301918] SLOW spr round 12 (radius: 10)
[01:18:16 -27925.299126] SLOW spr round 13 (radius: 15)
[01:19:15 -27924.666562] SLOW spr round 14 (radius: 5)
[01:20:05 -27924.662883] SLOW spr round 15 (radius: 10)
[01:20:52 -27924.660443] SLOW spr round 16 (radius: 15)
[01:21:50 -27924.659119] SLOW spr round 17 (radius: 20)
[01:23:01 -27924.659112] SLOW spr round 18 (radius: 25)
[01:24:23 -27924.556096] SLOW spr round 19 (radius: 5)
[01:25:15 -27924.556018] SLOW spr round 20 (radius: 10)
[01:26:03 -27924.556017] SLOW spr round 21 (radius: 15)
[01:27:01 -27924.556016] SLOW spr round 22 (radius: 20)
[01:28:12 -27924.556015] SLOW spr round 23 (radius: 25)
[01:29:32 -27924.556015] Model parameter optimization (eps = 0.100000)

[01:29:41] ML tree search #3, logLikelihood: -27923.526384

[01:29:41 -83688.545375] Initial branch length optimization
[01:29:42 -67203.176392] Model parameter optimization (eps = 10.000000)
[01:29:55 -66798.139761] AUTODETECT spr round 1 (radius: 5)
[01:30:33 -53728.936513] AUTODETECT spr round 2 (radius: 10)
[01:31:16 -43969.697404] AUTODETECT spr round 3 (radius: 15)
[01:32:04 -38913.925217] AUTODETECT spr round 4 (radius: 20)
[01:32:58 -36139.248772] AUTODETECT spr round 5 (radius: 25)
[01:33:53 -35490.892050] SPR radius for FAST iterations: 25 (autodetect)
[01:33:53 -35490.892050] Model parameter optimization (eps = 3.000000)
[01:34:01 -35438.912589] FAST spr round 1 (radius: 25)
[01:34:57 -28787.774731] FAST spr round 2 (radius: 25)
[01:35:42 -28038.084729] FAST spr round 3 (radius: 25)
[01:36:21 -27991.194391] FAST spr round 4 (radius: 25)
[01:36:57 -27979.395599] FAST spr round 5 (radius: 25)
[01:37:30 -27975.939328] FAST spr round 6 (radius: 25)
[01:38:03 -27975.938730] Model parameter optimization (eps = 1.000000)
[01:38:09 -27972.510455] SLOW spr round 1 (radius: 5)
[01:38:51 -27952.622924] SLOW spr round 2 (radius: 5)
[01:39:32 -27951.140072] SLOW spr round 3 (radius: 5)
[01:40:11 -27951.139590] SLOW spr round 4 (radius: 10)
[01:40:53 -27948.087198] SLOW spr round 5 (radius: 5)
[01:41:42 -27946.340970] SLOW spr round 6 (radius: 5)
[01:42:26 -27945.595351] SLOW spr round 7 (radius: 5)
[01:43:07 -27945.595047] SLOW spr round 8 (radius: 10)
[01:43:48 -27945.595036] SLOW spr round 9 (radius: 15)
[01:44:48 -27945.215413] SLOW spr round 10 (radius: 5)
[01:45:38 -27945.201233] SLOW spr round 11 (radius: 10)
[01:46:26 -27945.201181] SLOW spr round 12 (radius: 15)
[01:47:23 -27945.201176] SLOW spr round 13 (radius: 20)
[01:48:34 -27944.159244] SLOW spr round 14 (radius: 5)
[01:49:26 -27944.100303] SLOW spr round 15 (radius: 10)
[01:50:15 -27944.094593] SLOW spr round 16 (radius: 15)
[01:51:13 -27944.094531] SLOW spr round 17 (radius: 20)
[01:52:23 -27943.813943] SLOW spr round 18 (radius: 5)
[01:53:15 -27943.813824] SLOW spr round 19 (radius: 10)
[01:54:05 -27943.813819] SLOW spr round 20 (radius: 15)
[01:55:02 -27943.813818] SLOW spr round 21 (radius: 20)
[01:56:12 -27943.813818] SLOW spr round 22 (radius: 25)
[01:57:34 -27942.655189] SLOW spr round 23 (radius: 5)
[01:58:28 -27941.656382] SLOW spr round 24 (radius: 5)
[01:59:14 -27941.656245] SLOW spr round 25 (radius: 10)
[01:59:58 -27941.656215] SLOW spr round 26 (radius: 15)
[02:00:57 -27941.656203] SLOW spr round 27 (radius: 20)
[02:02:08 -27941.656198] SLOW spr round 28 (radius: 25)
[02:03:31 -27941.656195] Model parameter optimization (eps = 0.100000)

[02:03:34] ML tree search #4, logLikelihood: -27941.503049

[02:03:34 -83016.694352] Initial branch length optimization
[02:03:35 -66877.798877] Model parameter optimization (eps = 10.000000)
[02:03:49 -66495.761492] AUTODETECT spr round 1 (radius: 5)
[02:04:28 -54813.043441] AUTODETECT spr round 2 (radius: 10)
[02:05:13 -43841.790897] AUTODETECT spr round 3 (radius: 15)
[02:06:02 -36781.356188] AUTODETECT spr round 4 (radius: 20)
[02:06:57 -35080.355054] AUTODETECT spr round 5 (radius: 25)
[02:08:04 -33174.323833] SPR radius for FAST iterations: 25 (autodetect)
[02:08:04 -33174.323833] Model parameter optimization (eps = 3.000000)
[02:08:15 -33108.587353] FAST spr round 1 (radius: 25)
[02:09:13 -28561.238771] FAST spr round 2 (radius: 25)
[02:09:57 -28194.002104] FAST spr round 3 (radius: 25)
[02:10:38 -28146.481624] FAST spr round 4 (radius: 25)
[02:11:15 -28140.525798] FAST spr round 5 (radius: 25)
[02:11:51 -28136.447476] FAST spr round 6 (radius: 25)
[02:12:26 -28136.447307] Model parameter optimization (eps = 1.000000)
[02:12:33 -28132.480231] SLOW spr round 1 (radius: 5)
[02:13:16 -28121.522706] SLOW spr round 2 (radius: 5)
[02:13:59 -28119.501223] SLOW spr round 3 (radius: 5)
[02:14:40 -28119.500006] SLOW spr round 4 (radius: 10)
[02:15:24 -28118.787995] SLOW spr round 5 (radius: 5)
[02:16:14 -28118.781131] SLOW spr round 6 (radius: 10)
[02:17:03 -28118.779540] SLOW spr round 7 (radius: 15)
[02:18:03 -28118.779112] SLOW spr round 8 (radius: 20)
[02:19:14 -28115.529118] SLOW spr round 9 (radius: 5)
[02:20:09 -28110.740633] SLOW spr round 10 (radius: 5)
[02:20:58 -28109.434952] SLOW spr round 11 (radius: 5)
[02:21:42 -28109.268077] SLOW spr round 12 (radius: 5)
[02:22:25 -28109.267685] SLOW spr round 13 (radius: 10)
[02:23:10 -28108.712837] SLOW spr round 14 (radius: 5)
[02:23:59 -28108.711815] SLOW spr round 15 (radius: 10)
[02:24:48 -28107.686388] SLOW spr round 16 (radius: 5)
[02:25:36 -28107.685504] SLOW spr round 17 (radius: 10)
[02:26:24 -28107.685429] SLOW spr round 18 (radius: 15)
[02:27:27 -28107.481498] SLOW spr round 19 (radius: 5)
[02:28:19 -28106.887780] SLOW spr round 20 (radius: 5)
[02:29:06 -28106.887742] SLOW spr round 21 (radius: 10)
[02:29:52 -28106.046313] SLOW spr round 22 (radius: 5)
[02:30:42 -28105.139436] SLOW spr round 23 (radius: 5)
[02:31:26 -28105.139263] SLOW spr round 24 (radius: 10)
[02:32:12 -28105.139229] SLOW spr round 25 (radius: 15)
[02:33:16 -28105.139199] SLOW spr round 26 (radius: 20)
[02:34:39 -27937.495395] SLOW spr round 27 (radius: 5)
[02:35:35 -27919.105519] SLOW spr round 28 (radius: 5)
[02:36:23 -27918.686435] SLOW spr round 29 (radius: 5)
[02:37:07 -27918.686323] SLOW spr round 30 (radius: 10)
[02:37:53 -27918.532236] SLOW spr round 31 (radius: 5)
[02:38:42 -27918.529665] SLOW spr round 32 (radius: 10)
[02:39:30 -27918.157765] SLOW spr round 33 (radius: 5)
[02:40:19 -27917.846649] SLOW spr round 34 (radius: 5)
[02:41:04 -27917.846638] SLOW spr round 35 (radius: 10)
[02:41:49 -27917.846637] SLOW spr round 36 (radius: 15)
[02:42:54 -27917.846637] SLOW spr round 37 (radius: 20)
[02:44:17 -27916.730911] SLOW spr round 38 (radius: 5)
[02:45:11 -27916.241312] SLOW spr round 39 (radius: 5)
[02:45:58 -27916.241307] SLOW spr round 40 (radius: 10)
[02:46:44 -27916.241306] SLOW spr round 41 (radius: 15)
[02:47:47 -27916.241306] SLOW spr round 42 (radius: 20)
[02:49:11 -27916.241306] SLOW spr round 43 (radius: 25)
[02:50:54 -27910.900072] SLOW spr round 44 (radius: 5)
[02:51:49 -27907.341254] SLOW spr round 45 (radius: 5)
[02:52:38 -27906.948991] SLOW spr round 46 (radius: 5)
[02:53:21 -27906.948903] SLOW spr round 47 (radius: 10)
[02:54:07 -27906.481075] SLOW spr round 48 (radius: 5)
[02:54:56 -27906.479550] SLOW spr round 49 (radius: 10)
[02:55:44 -27906.479353] SLOW spr round 50 (radius: 15)
[02:56:48 -27906.467116] SLOW spr round 51 (radius: 20)
[02:58:14 -27906.419179] SLOW spr round 52 (radius: 25)
[02:59:59 -27906.418695] Model parameter optimization (eps = 0.100000)

[03:00:02] ML tree search #5, logLikelihood: -27906.393476

[03:00:03 -83172.487562] Initial branch length optimization
[03:00:04 -67559.277207] Model parameter optimization (eps = 10.000000)
[03:00:15 -67168.910432] AUTODETECT spr round 1 (radius: 5)
[03:00:55 -53366.987226] AUTODETECT spr round 2 (radius: 10)
[03:01:41 -43027.069990] AUTODETECT spr round 3 (radius: 15)
[03:02:32 -36851.887994] AUTODETECT spr round 4 (radius: 20)
[03:03:26 -34036.854532] AUTODETECT spr round 5 (radius: 25)
[03:04:25 -32467.188360] SPR radius for FAST iterations: 25 (autodetect)
[03:04:25 -32467.188360] Model parameter optimization (eps = 3.000000)
[03:04:36 -32397.537090] FAST spr round 1 (radius: 25)
[03:05:32 -28271.736067] FAST spr round 2 (radius: 25)
[03:06:17 -28011.875440] FAST spr round 3 (radius: 25)
[03:06:58 -27972.412740] FAST spr round 4 (radius: 25)
[03:07:35 -27960.728953] FAST spr round 5 (radius: 25)
[03:08:10 -27959.505251] FAST spr round 6 (radius: 25)
[03:08:44 -27959.504896] Model parameter optimization (eps = 1.000000)
[03:08:53 -27954.786781] SLOW spr round 1 (radius: 5)
[03:09:36 -27943.972571] SLOW spr round 2 (radius: 5)
[03:10:17 -27943.243437] SLOW spr round 3 (radius: 5)
[03:10:58 -27943.242891] SLOW spr round 4 (radius: 10)
[03:11:41 -27941.974784] SLOW spr round 5 (radius: 5)
[03:12:31 -27941.094536] SLOW spr round 6 (radius: 5)
[03:13:16 -27940.643292] SLOW spr round 7 (radius: 5)
[03:13:59 -27940.641887] SLOW spr round 8 (radius: 10)
[03:14:42 -27940.641703] SLOW spr round 9 (radius: 15)
[03:15:41 -27940.641661] SLOW spr round 10 (radius: 20)
[03:16:55 -27938.636727] SLOW spr round 11 (radius: 5)
[03:17:49 -27936.963127] SLOW spr round 12 (radius: 5)
[03:18:36 -27936.962589] SLOW spr round 13 (radius: 10)
[03:19:20 -27936.962396] SLOW spr round 14 (radius: 15)
[03:20:19 -27936.962307] SLOW spr round 15 (radius: 20)
[03:21:33 -27936.962257] SLOW spr round 16 (radius: 25)
[03:23:03 -27923.489995] SLOW spr round 17 (radius: 5)
[03:23:58 -27921.388313] SLOW spr round 18 (radius: 5)
[03:24:46 -27921.225699] SLOW spr round 19 (radius: 5)
[03:25:30 -27921.225085] SLOW spr round 20 (radius: 10)
[03:26:14 -27921.225003] SLOW spr round 21 (radius: 15)
[03:27:13 -27921.224966] SLOW spr round 22 (radius: 20)
[03:28:27 -27921.224936] SLOW spr round 23 (radius: 25)
[03:29:57 -27921.038626] SLOW spr round 24 (radius: 5)
[03:30:50 -27920.928514] SLOW spr round 25 (radius: 5)
[03:31:37 -27920.925601] SLOW spr round 26 (radius: 10)
[03:32:22 -27920.924049] SLOW spr round 27 (radius: 15)
[03:33:20 -27920.923234] SLOW spr round 28 (radius: 20)
[03:34:35 -27920.922826] SLOW spr round 29 (radius: 25)
[03:36:05 -27920.853823] Model parameter optimization (eps = 0.100000)

[03:36:07] ML tree search #6, logLikelihood: -27920.659192

[03:36:07 -83124.581628] Initial branch length optimization
[03:36:08 -66938.498942] Model parameter optimization (eps = 10.000000)
[03:36:20 -66550.890748] AUTODETECT spr round 1 (radius: 5)
[03:37:00 -53818.144500] AUTODETECT spr round 2 (radius: 10)
[03:37:45 -43426.198467] AUTODETECT spr round 3 (radius: 15)
[03:38:34 -38058.254828] AUTODETECT spr round 4 (radius: 20)
[03:39:26 -36617.995429] AUTODETECT spr round 5 (radius: 25)
[03:40:31 -34712.401482] SPR radius for FAST iterations: 25 (autodetect)
[03:40:31 -34712.401482] Model parameter optimization (eps = 3.000000)
[03:40:41 -34650.023514] FAST spr round 1 (radius: 25)
[03:41:36 -29853.122091] FAST spr round 2 (radius: 25)
[03:42:24 -29171.945036] FAST spr round 3 (radius: 25)
[03:43:07 -28373.293977] FAST spr round 4 (radius: 25)
[03:43:48 -28079.620775] FAST spr round 5 (radius: 25)
[03:44:24 -28065.369914] FAST spr round 6 (radius: 25)
[03:44:58 -28065.303726] Model parameter optimization (eps = 1.000000)
[03:45:05 -28060.765834] SLOW spr round 1 (radius: 5)
[03:45:48 -28054.023256] SLOW spr round 2 (radius: 5)
[03:46:30 -28052.651572] SLOW spr round 3 (radius: 5)
[03:47:12 -28048.487169] SLOW spr round 4 (radius: 5)
[03:47:53 -28048.486320] SLOW spr round 5 (radius: 10)
[03:48:37 -28046.067206] SLOW spr round 6 (radius: 5)
[03:49:28 -28044.161586] SLOW spr round 7 (radius: 5)
[03:50:13 -28044.161516] SLOW spr round 8 (radius: 10)
[03:50:57 -28043.892341] SLOW spr round 9 (radius: 5)
[03:51:46 -28043.795765] SLOW spr round 10 (radius: 10)
[03:52:32 -28043.792590] SLOW spr round 11 (radius: 15)
[03:53:32 -28038.249250] SLOW spr round 12 (radius: 5)
[03:54:25 -28035.898070] SLOW spr round 13 (radius: 5)
[03:55:12 -28035.176158] SLOW spr round 14 (radius: 5)
[03:55:55 -28035.175775] SLOW spr round 15 (radius: 10)
[03:56:38 -28035.175746] SLOW spr round 16 (radius: 15)
[03:57:41 -28035.175707] SLOW spr round 17 (radius: 20)
[03:58:58 -28035.175707] SLOW spr round 18 (radius: 25)
[04:00:32 -28034.005408] SLOW spr round 19 (radius: 5)
[04:01:25 -28034.004078] SLOW spr round 20 (radius: 10)
[04:02:15 -28034.004005] SLOW spr round 21 (radius: 15)
[04:03:15 -28034.003998] SLOW spr round 22 (radius: 20)
[04:04:33 -28034.003997] SLOW spr round 23 (radius: 25)
[04:06:08 -28033.285209] SLOW spr round 24 (radius: 5)
[04:07:02 -28033.272295] SLOW spr round 25 (radius: 10)
[04:07:52 -28033.271612] SLOW spr round 26 (radius: 15)
[04:08:52 -28033.271469] SLOW spr round 27 (radius: 20)
[04:10:11 -28033.271442] SLOW spr round 28 (radius: 25)
[04:11:45 -28033.071013] SLOW spr round 29 (radius: 5)
[04:12:39 -28032.744610] SLOW spr round 30 (radius: 5)
[04:13:25 -28032.743762] SLOW spr round 31 (radius: 10)
[04:14:09 -28032.743726] SLOW spr round 32 (radius: 15)
[04:15:10 -28032.743724] SLOW spr round 33 (radius: 20)
[04:16:27 -28032.743723] SLOW spr round 34 (radius: 25)
[04:18:01 -28032.659518] Model parameter optimization (eps = 0.100000)

[04:18:11] ML tree search #7, logLikelihood: -28032.183088

[04:18:11 -83320.772792] Initial branch length optimization
[04:18:12 -67181.110957] Model parameter optimization (eps = 10.000000)
[04:18:25 -66769.155508] AUTODETECT spr round 1 (radius: 5)
[04:19:04 -53833.627575] AUTODETECT spr round 2 (radius: 10)
[04:19:48 -44035.695687] AUTODETECT spr round 3 (radius: 15)
[04:20:39 -37305.613970] AUTODETECT spr round 4 (radius: 20)
[04:21:34 -33868.280411] AUTODETECT spr round 5 (radius: 25)
[04:22:36 -32471.833921] SPR radius for FAST iterations: 25 (autodetect)
[04:22:36 -32471.833921] Model parameter optimization (eps = 3.000000)
[04:22:45 -32407.894017] FAST spr round 1 (radius: 25)
[04:23:40 -28536.559060] FAST spr round 2 (radius: 25)
[04:24:23 -28073.386018] FAST spr round 3 (radius: 25)
[04:25:02 -28006.425569] FAST spr round 4 (radius: 25)
[04:25:37 -28003.318956] FAST spr round 5 (radius: 25)
[04:26:10 -28001.866397] FAST spr round 6 (radius: 25)
[04:26:43 -28001.866337] Model parameter optimization (eps = 1.000000)
[04:26:52 -27995.194047] SLOW spr round 1 (radius: 5)
[04:27:33 -27985.917220] SLOW spr round 2 (radius: 5)
[04:28:16 -27981.590553] SLOW spr round 3 (radius: 5)
[04:28:56 -27981.589139] SLOW spr round 4 (radius: 10)
[04:29:40 -27976.389464] SLOW spr round 5 (radius: 5)
[04:30:29 -27975.469172] SLOW spr round 6 (radius: 5)
[04:31:15 -27972.207305] SLOW spr round 7 (radius: 5)
[04:31:59 -27967.061832] SLOW spr round 8 (radius: 5)
[04:32:41 -27966.068209] SLOW spr round 9 (radius: 5)
[04:33:21 -27966.067472] SLOW spr round 10 (radius: 10)
[04:34:03 -27966.067462] SLOW spr round 11 (radius: 15)
[04:35:07 -27957.643786] SLOW spr round 12 (radius: 5)
[04:35:59 -27956.350086] SLOW spr round 13 (radius: 5)
[04:36:44 -27956.348059] SLOW spr round 14 (radius: 10)
[04:37:29 -27956.347216] SLOW spr round 15 (radius: 15)
[04:38:30 -27956.346671] SLOW spr round 16 (radius: 20)
[04:39:44 -27949.094143] SLOW spr round 17 (radius: 5)
[04:40:35 -27947.911014] SLOW spr round 18 (radius: 5)
[04:41:22 -27945.649033] SLOW spr round 19 (radius: 5)
[04:42:04 -27945.648946] SLOW spr round 20 (radius: 10)
[04:42:46 -27945.648942] SLOW spr round 21 (radius: 15)
[04:43:46 -27945.648941] SLOW spr round 22 (radius: 20)
[04:45:00 -27945.648941] SLOW spr round 23 (radius: 25)
[04:46:28 -27945.648941] Model parameter optimization (eps = 0.100000)

[04:46:33] ML tree search #8, logLikelihood: -27945.526593

[04:46:33 -83124.307082] Initial branch length optimization
[04:46:34 -67011.675425] Model parameter optimization (eps = 10.000000)
[04:46:48 -66584.748997] AUTODETECT spr round 1 (radius: 5)
[04:47:26 -54516.544474] AUTODETECT spr round 2 (radius: 10)
[04:48:09 -43346.234342] AUTODETECT spr round 3 (radius: 15)
[04:48:57 -37008.678814] AUTODETECT spr round 4 (radius: 20)
[04:49:51 -33307.263171] AUTODETECT spr round 5 (radius: 25)
[04:50:45 -32448.740279] SPR radius for FAST iterations: 25 (autodetect)
[04:50:45 -32448.740279] Model parameter optimization (eps = 3.000000)
[04:50:53 -32391.130335] FAST spr round 1 (radius: 25)
[04:51:44 -28636.123415] FAST spr round 2 (radius: 25)
[04:52:29 -28201.110011] FAST spr round 3 (radius: 25)
[04:53:09 -27995.328907] FAST spr round 4 (radius: 25)
[04:53:46 -27963.808021] FAST spr round 5 (radius: 25)
[04:54:20 -27942.942363] FAST spr round 6 (radius: 25)
[04:54:52 -27941.768711] FAST spr round 7 (radius: 25)
[04:55:24 -27941.768365] Model parameter optimization (eps = 1.000000)
[04:55:28 -27939.446740] SLOW spr round 1 (radius: 5)
[04:56:08 -27931.632603] SLOW spr round 2 (radius: 5)
[04:56:47 -27931.200527] SLOW spr round 3 (radius: 5)
[04:57:26 -27931.197049] SLOW spr round 4 (radius: 10)
[04:58:06 -27931.196288] SLOW spr round 5 (radius: 15)
[04:59:10 -27923.063991] SLOW spr round 6 (radius: 5)
[05:00:02 -27920.762913] SLOW spr round 7 (radius: 5)
[05:00:48 -27920.500300] SLOW spr round 8 (radius: 5)
[05:01:31 -27919.169339] SLOW spr round 9 (radius: 5)
[05:02:11 -27919.169122] SLOW spr round 10 (radius: 10)
[05:02:52 -27917.284932] SLOW spr round 11 (radius: 5)
[05:03:40 -27917.090010] SLOW spr round 12 (radius: 5)
[05:04:23 -27917.086563] SLOW spr round 13 (radius: 10)
[05:05:06 -27917.086073] SLOW spr round 14 (radius: 15)
[05:06:06 -27912.907094] SLOW spr round 15 (radius: 5)
[05:06:55 -27912.805975] SLOW spr round 16 (radius: 5)
[05:07:39 -27912.804407] SLOW spr round 17 (radius: 10)
[05:08:23 -27912.803714] SLOW spr round 18 (radius: 15)
[05:09:21 -27912.803227] SLOW spr round 19 (radius: 20)
[05:10:30 -27910.802763] SLOW spr round 20 (radius: 5)
[05:11:21 -27910.700248] SLOW spr round 21 (radius: 5)
[05:12:07 -27910.341041] SLOW spr round 22 (radius: 5)
[05:12:49 -27910.340437] SLOW spr round 23 (radius: 10)
[05:13:31 -27910.340346] SLOW spr round 24 (radius: 15)
[05:14:29 -27910.340329] SLOW spr round 25 (radius: 20)
[05:15:38 -27910.136301] SLOW spr round 26 (radius: 5)
[05:16:28 -27910.134545] SLOW spr round 27 (radius: 10)
[05:17:16 -27910.134339] SLOW spr round 28 (radius: 15)
[05:18:12 -27910.134309] SLOW spr round 29 (radius: 20)
[05:19:21 -27910.134304] SLOW spr round 30 (radius: 25)
[05:20:40 -27909.852749] SLOW spr round 31 (radius: 5)
[05:21:31 -27909.804179] SLOW spr round 32 (radius: 10)
[05:22:20 -27909.801443] SLOW spr round 33 (radius: 15)
[05:23:16 -27909.800339] SLOW spr round 34 (radius: 20)
[05:24:24 -27909.799881] SLOW spr round 35 (radius: 25)
[05:25:43 -27909.799687] Model parameter optimization (eps = 0.100000)

[05:25:46] ML tree search #9, logLikelihood: -27909.664236

[05:25:46 -83044.870191] Initial branch length optimization
[05:25:47 -67289.846043] Model parameter optimization (eps = 10.000000)
[05:26:01 -66913.977955] AUTODETECT spr round 1 (radius: 5)
[05:26:38 -52992.473460] AUTODETECT spr round 2 (radius: 10)
[05:27:20 -43903.937573] AUTODETECT spr round 3 (radius: 15)
[05:28:07 -36109.615369] AUTODETECT spr round 4 (radius: 20)
[05:28:57 -33168.076872] AUTODETECT spr round 5 (radius: 25)
[05:29:52 -32758.076107] SPR radius for FAST iterations: 25 (autodetect)
[05:29:52 -32758.076107] Model parameter optimization (eps = 3.000000)
[05:30:02 -32699.129601] FAST spr round 1 (radius: 25)
[05:30:57 -29337.028487] FAST spr round 2 (radius: 25)
[05:31:44 -28427.007147] FAST spr round 3 (radius: 25)
[05:32:25 -28164.240094] FAST spr round 4 (radius: 25)
[05:33:01 -28142.326619] FAST spr round 5 (radius: 25)
[05:33:35 -28141.070484] FAST spr round 6 (radius: 25)
[05:34:09 -28139.969983] FAST spr round 7 (radius: 25)
[05:34:42 -28139.969148] Model parameter optimization (eps = 1.000000)
[05:34:48 -28132.637558] SLOW spr round 1 (radius: 5)
[05:35:29 -28125.882452] SLOW spr round 2 (radius: 5)
[05:36:09 -28125.881373] SLOW spr round 3 (radius: 10)
[05:36:50 -28125.202007] SLOW spr round 4 (radius: 5)
[05:37:38 -28125.088428] SLOW spr round 5 (radius: 5)
[05:38:21 -28125.088280] SLOW spr round 6 (radius: 10)
[05:39:03 -28125.088247] SLOW spr round 7 (radius: 15)
[05:40:03 -28124.241771] SLOW spr round 8 (radius: 5)
[05:40:53 -28124.233625] SLOW spr round 9 (radius: 10)
[05:41:40 -28124.233591] SLOW spr round 10 (radius: 15)
[05:42:38 -28124.168300] SLOW spr round 11 (radius: 20)
[05:43:53 -28121.835931] SLOW spr round 12 (radius: 5)
[05:44:44 -28121.071530] SLOW spr round 13 (radius: 5)
[05:45:30 -28121.067415] SLOW spr round 14 (radius: 10)
[05:46:13 -28121.067184] SLOW spr round 15 (radius: 15)
[05:47:13 -28121.067152] SLOW spr round 16 (radius: 20)
[05:48:27 -28121.067145] SLOW spr round 17 (radius: 25)
[05:49:49 -28119.394159] SLOW spr round 18 (radius: 5)
[05:50:44 -27988.532843] SLOW spr round 19 (radius: 5)
[05:51:32 -27984.441004] SLOW spr round 20 (radius: 5)
[05:52:15 -27983.948873] SLOW spr round 21 (radius: 5)
[05:52:56 -27983.948837] SLOW spr round 22 (radius: 10)
[05:53:39 -27980.076526] SLOW spr round 23 (radius: 5)
[05:54:28 -27977.619570] SLOW spr round 24 (radius: 5)
[05:55:12 -27977.608844] SLOW spr round 25 (radius: 10)
[05:55:55 -27977.608076] SLOW spr round 26 (radius: 15)
[05:56:55 -27977.266263] SLOW spr round 27 (radius: 5)
[05:57:45 -27977.266068] SLOW spr round 28 (radius: 10)
[05:58:32 -27977.266014] SLOW spr round 29 (radius: 15)
[05:59:30 -27977.265982] SLOW spr round 30 (radius: 20)
[06:00:45 -27970.296764] SLOW spr round 31 (radius: 5)
[06:01:38 -27969.771363] SLOW spr round 32 (radius: 5)
[06:02:23 -27969.769638] SLOW spr round 33 (radius: 10)
[06:03:07 -27967.557931] SLOW spr round 34 (radius: 5)
[06:03:56 -27965.484898] SLOW spr round 35 (radius: 5)
[06:04:39 -27965.484501] SLOW spr round 36 (radius: 10)
[06:05:22 -27965.484493] SLOW spr round 37 (radius: 15)
[06:06:22 -27965.442697] SLOW spr round 38 (radius: 20)
[06:07:38 -27965.442670] SLOW spr round 39 (radius: 25)
[06:09:06 -27965.442669] Model parameter optimization (eps = 0.100000)

[06:09:08] ML tree search #10, logLikelihood: -27965.439466

[06:09:08 -83142.337206] Initial branch length optimization
[06:09:09 -66937.444882] Model parameter optimization (eps = 10.000000)
[06:09:25 -66524.439527] AUTODETECT spr round 1 (radius: 5)
[06:10:03 -53457.132040] AUTODETECT spr round 2 (radius: 10)
[06:10:47 -43766.008215] AUTODETECT spr round 3 (radius: 15)
[06:11:33 -38355.587902] AUTODETECT spr round 4 (radius: 20)
[06:12:24 -34225.637131] AUTODETECT spr round 5 (radius: 25)
[06:13:19 -33209.739363] SPR radius for FAST iterations: 25 (autodetect)
[06:13:19 -33209.739363] Model parameter optimization (eps = 3.000000)
[06:13:27 -33136.555025] FAST spr round 1 (radius: 25)
[06:14:21 -28320.916890] FAST spr round 2 (radius: 25)
[06:15:06 -28048.164327] FAST spr round 3 (radius: 25)
[06:15:44 -27980.677075] FAST spr round 4 (radius: 25)
[06:16:21 -27958.362730] FAST spr round 5 (radius: 25)
[06:16:57 -27941.942834] FAST spr round 6 (radius: 25)
[06:17:30 -27941.338664] FAST spr round 7 (radius: 25)
[06:18:02 -27941.329711] Model parameter optimization (eps = 1.000000)
[06:18:06 -27941.110969] SLOW spr round 1 (radius: 5)
[06:18:47 -27935.956226] SLOW spr round 2 (radius: 5)
[06:19:26 -27935.589200] SLOW spr round 3 (radius: 5)
[06:20:05 -27935.587345] SLOW spr round 4 (radius: 10)
[06:20:45 -27935.587038] SLOW spr round 5 (radius: 15)
[06:21:47 -27930.904878] SLOW spr round 6 (radius: 5)
[06:22:36 -27930.531465] SLOW spr round 7 (radius: 5)
[06:23:20 -27930.531214] SLOW spr round 8 (radius: 10)
[06:24:02 -27930.531210] SLOW spr round 9 (radius: 15)
[06:25:01 -27930.531209] SLOW spr round 10 (radius: 20)
[06:26:14 -27929.903409] SLOW spr round 11 (radius: 5)
[06:27:04 -27929.902232] SLOW spr round 12 (radius: 10)
[06:27:52 -27929.902128] SLOW spr round 13 (radius: 15)
[06:28:48 -27929.902118] SLOW spr round 14 (radius: 20)
[06:30:00 -27929.902113] SLOW spr round 15 (radius: 25)
[06:31:28 -27929.902111] Model parameter optimization (eps = 0.100000)

[06:31:31] ML tree search #11, logLikelihood: -27929.879601

[06:31:31 -82824.034434] Initial branch length optimization
[06:31:32 -67212.476516] Model parameter optimization (eps = 10.000000)
[06:31:42 -66788.849028] AUTODETECT spr round 1 (radius: 5)
[06:32:20 -54256.081848] AUTODETECT spr round 2 (radius: 10)
[06:33:03 -44804.688008] AUTODETECT spr round 3 (radius: 15)
[06:33:50 -38580.700238] AUTODETECT spr round 4 (radius: 20)
[06:34:45 -33682.383362] AUTODETECT spr round 5 (radius: 25)
[06:35:39 -32212.682642] SPR radius for FAST iterations: 25 (autodetect)
[06:35:39 -32212.682642] Model parameter optimization (eps = 3.000000)
[06:35:47 -32153.040524] FAST spr round 1 (radius: 25)
[06:36:38 -28210.734884] FAST spr round 2 (radius: 25)
[06:37:21 -27977.280825] FAST spr round 3 (radius: 25)
[06:37:58 -27946.651374] FAST spr round 4 (radius: 25)
[06:38:34 -27931.006270] FAST spr round 5 (radius: 25)
[06:39:06 -27926.825942] FAST spr round 6 (radius: 25)
[06:39:38 -27926.428152] FAST spr round 7 (radius: 25)
[06:40:09 -27926.117521] FAST spr round 8 (radius: 25)
[06:40:40 -27926.116033] Model parameter optimization (eps = 1.000000)
[06:40:43 -27923.756989] SLOW spr round 1 (radius: 5)
[06:41:21 -27916.985844] SLOW spr round 2 (radius: 5)
[06:41:59 -27916.979195] SLOW spr round 3 (radius: 10)
[06:42:41 -27909.743443] SLOW spr round 4 (radius: 5)
[06:43:28 -27908.430129] SLOW spr round 5 (radius: 5)
[06:44:10 -27908.429703] SLOW spr round 6 (radius: 10)
[06:44:51 -27907.535950] SLOW spr round 7 (radius: 5)
[06:45:38 -27905.567499] SLOW spr round 8 (radius: 5)
[06:46:20 -27905.566707] SLOW spr round 9 (radius: 10)
[06:47:01 -27902.602834] SLOW spr round 10 (radius: 5)
[06:47:46 -27901.914135] SLOW spr round 11 (radius: 5)
[06:48:28 -27901.913304] SLOW spr round 12 (radius: 10)
[06:49:09 -27901.913264] SLOW spr round 13 (radius: 15)
[06:50:08 -27894.960586] SLOW spr round 14 (radius: 5)
[06:50:56 -27894.548365] SLOW spr round 15 (radius: 5)
[06:51:40 -27894.362155] SLOW spr round 16 (radius: 5)
[06:52:19 -27894.361838] SLOW spr round 17 (radius: 10)
[06:52:59 -27894.361795] SLOW spr round 18 (radius: 15)
[06:53:58 -27894.361762] SLOW spr round 19 (radius: 20)
[06:55:12 -27893.437096] SLOW spr round 20 (radius: 5)
[06:56:01 -27892.994678] SLOW spr round 21 (radius: 5)
[06:56:44 -27892.994588] SLOW spr round 22 (radius: 10)
[06:57:28 -27890.109432] SLOW spr round 23 (radius: 5)
[06:58:14 -27890.033492] SLOW spr round 24 (radius: 10)
[06:58:59 -27890.032907] SLOW spr round 25 (radius: 15)
[06:59:57 -27890.032824] SLOW spr round 26 (radius: 20)
[07:01:12 -27890.032795] SLOW spr round 27 (radius: 25)
[07:02:41 -27890.032783] Model parameter optimization (eps = 0.100000)

[07:02:43] ML tree search #12, logLikelihood: -27889.944526

[07:02:43 -83337.869107] Initial branch length optimization
[07:02:45 -67292.964025] Model parameter optimization (eps = 10.000000)
[07:03:00 -66897.369923] AUTODETECT spr round 1 (radius: 5)
[07:03:37 -52707.937400] AUTODETECT spr round 2 (radius: 10)
[07:04:21 -42808.338940] AUTODETECT spr round 3 (radius: 15)
[07:05:08 -37403.537138] AUTODETECT spr round 4 (radius: 20)
[07:06:02 -34414.237565] AUTODETECT spr round 5 (radius: 25)
[07:07:04 -32785.845871] SPR radius for FAST iterations: 25 (autodetect)
[07:07:04 -32785.845871] Model parameter optimization (eps = 3.000000)
[07:07:11 -32720.219955] FAST spr round 1 (radius: 25)
[07:08:06 -29230.027570] FAST spr round 2 (radius: 25)
[07:08:49 -28974.993961] FAST spr round 3 (radius: 25)
[07:09:28 -28953.953241] FAST spr round 4 (radius: 25)
[07:10:04 -28939.054754] FAST spr round 5 (radius: 25)
[07:10:38 -28934.223352] FAST spr round 6 (radius: 25)
[07:11:11 -28934.223255] Model parameter optimization (eps = 1.000000)
[07:11:16 -28930.910207] SLOW spr round 1 (radius: 5)
[07:11:56 -28921.316647] SLOW spr round 2 (radius: 5)
[07:12:36 -28921.106380] SLOW spr round 3 (radius: 5)
[07:13:15 -28920.499556] SLOW spr round 4 (radius: 5)
[07:13:54 -28920.498237] SLOW spr round 5 (radius: 10)
[07:14:35 -28920.043755] SLOW spr round 6 (radius: 5)
[07:15:23 -28920.038187] SLOW spr round 7 (radius: 10)
[07:16:07 -28920.037159] SLOW spr round 8 (radius: 15)
[07:17:06 -28918.793975] SLOW spr round 9 (radius: 5)
[07:17:55 -28918.791740] SLOW spr round 10 (radius: 10)
[07:18:41 -28918.791538] SLOW spr round 11 (radius: 15)
[07:19:39 -28918.791503] SLOW spr round 12 (radius: 20)
[07:20:52 -28917.517035] SLOW spr round 13 (radius: 5)
[07:21:42 -28917.414111] SLOW spr round 14 (radius: 5)
[07:22:27 -28917.413745] SLOW spr round 15 (radius: 10)
[07:23:10 -28917.413728] SLOW spr round 16 (radius: 15)
[07:24:08 -28917.413726] SLOW spr round 17 (radius: 20)
[07:25:20 -28917.413726] SLOW spr round 18 (radius: 25)
[07:26:43 -28910.094458] SLOW spr round 19 (radius: 5)
[07:27:37 -28898.982756] SLOW spr round 20 (radius: 5)
[07:28:24 -28896.940773] SLOW spr round 21 (radius: 5)
[07:29:06 -28896.938095] SLOW spr round 22 (radius: 10)
[07:29:51 -28884.605545] SLOW spr round 23 (radius: 5)
[07:30:39 -28879.521304] SLOW spr round 24 (radius: 5)
[07:31:22 -28879.521149] SLOW spr round 25 (radius: 10)
[07:32:03 -28879.521114] SLOW spr round 26 (radius: 15)
[07:32:59 -28879.521104] SLOW spr round 27 (radius: 20)
[07:34:06 -28879.521100] SLOW spr round 28 (radius: 25)
[07:35:24 -28879.521099] Model parameter optimization (eps = 0.100000)

[07:35:28] ML tree search #13, logLikelihood: -28879.406614

[07:35:28 -83266.791018] Initial branch length optimization
[07:35:29 -67161.152144] Model parameter optimization (eps = 10.000000)
[07:35:42 -66729.501059] AUTODETECT spr round 1 (radius: 5)
[07:36:19 -53457.531800] AUTODETECT spr round 2 (radius: 10)
[07:37:01 -43790.286280] AUTODETECT spr round 3 (radius: 15)
[07:37:46 -39042.548902] AUTODETECT spr round 4 (radius: 20)
[07:38:39 -36893.563489] AUTODETECT spr round 5 (radius: 25)
[07:39:35 -35754.438717] SPR radius for FAST iterations: 25 (autodetect)
[07:39:35 -35754.438717] Model parameter optimization (eps = 3.000000)
[07:39:56 -35700.045297] FAST spr round 1 (radius: 25)
[07:40:51 -30061.582825] FAST spr round 2 (radius: 25)
[07:41:35 -28966.982353] FAST spr round 3 (radius: 25)
[07:42:16 -28094.931341] FAST spr round 4 (radius: 25)
[07:42:54 -27957.197004] FAST spr round 5 (radius: 25)
[07:43:30 -27942.440534] FAST spr round 6 (radius: 25)
[07:44:02 -27939.747890] FAST spr round 7 (radius: 25)
[07:44:35 -27937.738157] FAST spr round 8 (radius: 25)
[07:45:07 -27937.738017] Model parameter optimization (eps = 1.000000)
[07:45:22 -27930.316852] SLOW spr round 1 (radius: 5)
[07:46:02 -27919.277597] SLOW spr round 2 (radius: 5)
[07:46:41 -27918.372535] SLOW spr round 3 (radius: 5)
[07:47:19 -27918.371296] SLOW spr round 4 (radius: 10)
[07:47:58 -27918.028939] SLOW spr round 5 (radius: 5)
[07:48:45 -27918.027046] SLOW spr round 6 (radius: 10)
[07:49:29 -27918.025921] SLOW spr round 7 (radius: 15)
[07:50:26 -27916.878300] SLOW spr round 8 (radius: 5)
[07:51:14 -27916.877085] SLOW spr round 9 (radius: 10)
[07:52:00 -27916.876871] SLOW spr round 10 (radius: 15)
[07:52:56 -27916.876751] SLOW spr round 11 (radius: 20)
[07:54:07 -27916.708957] SLOW spr round 12 (radius: 5)
[07:54:57 -27916.708751] SLOW spr round 13 (radius: 10)
[07:55:44 -27916.708699] SLOW spr round 14 (radius: 15)
[07:56:41 -27916.708657] SLOW spr round 15 (radius: 20)
[07:57:52 -27916.688971] SLOW spr round 16 (radius: 25)
[07:59:14 -27916.285302] SLOW spr round 17 (radius: 5)
[08:00:03 -27916.285174] SLOW spr round 18 (radius: 10)
[08:00:50 -27916.285137] SLOW spr round 19 (radius: 15)
[08:01:46 -27916.285129] SLOW spr round 20 (radius: 20)
[08:02:56 -27916.285127] SLOW spr round 21 (radius: 25)
[08:04:17 -27916.285126] Model parameter optimization (eps = 0.100000)

[08:04:19] ML tree search #14, logLikelihood: -27916.229682

[08:04:19 -83223.736584] Initial branch length optimization
[08:04:20 -66672.409686] Model parameter optimization (eps = 10.000000)
[08:04:30 -66273.848668] AUTODETECT spr round 1 (radius: 5)
[08:05:06 -54118.427714] AUTODETECT spr round 2 (radius: 10)
[08:05:48 -44703.959770] AUTODETECT spr round 3 (radius: 15)
[08:06:34 -37006.559671] AUTODETECT spr round 4 (radius: 20)
[08:07:26 -33568.094840] AUTODETECT spr round 5 (radius: 25)
[08:08:21 -33003.628121] SPR radius for FAST iterations: 25 (autodetect)
[08:08:21 -33003.628121] Model parameter optimization (eps = 3.000000)
[08:08:29 -32939.402223] FAST spr round 1 (radius: 25)
[08:09:21 -28669.330136] FAST spr round 2 (radius: 25)
[08:10:02 -28009.483656] FAST spr round 3 (radius: 25)
[08:10:39 -27951.526909] FAST spr round 4 (radius: 25)
[08:11:13 -27941.712044] FAST spr round 5 (radius: 25)
[08:11:45 -27940.930636] FAST spr round 6 (radius: 25)
[08:12:17 -27940.929754] Model parameter optimization (eps = 1.000000)
[08:12:20 -27938.399643] SLOW spr round 1 (radius: 5)
[08:13:00 -27929.367540] SLOW spr round 2 (radius: 5)
[08:13:40 -27928.051853] SLOW spr round 3 (radius: 5)
[08:14:18 -27928.051652] SLOW spr round 4 (radius: 10)
[08:14:58 -27927.439355] SLOW spr round 5 (radius: 5)
[08:15:45 -27927.396485] SLOW spr round 6 (radius: 10)
[08:16:31 -27926.177617] SLOW spr round 7 (radius: 5)
[08:17:16 -27926.176587] SLOW spr round 8 (radius: 10)
[08:18:01 -27926.176526] SLOW spr round 9 (radius: 15)
[08:18:59 -27924.590975] SLOW spr round 10 (radius: 5)
[08:19:48 -27922.139636] SLOW spr round 11 (radius: 5)
[08:20:31 -27922.139516] SLOW spr round 12 (radius: 10)
[08:21:14 -27922.139491] SLOW spr round 13 (radius: 15)
[08:22:13 -27922.139469] SLOW spr round 14 (radius: 20)
[08:23:26 -27922.139447] SLOW spr round 15 (radius: 25)
[08:24:55 -27919.436063] SLOW spr round 16 (radius: 5)
[08:25:46 -27919.254010] SLOW spr round 17 (radius: 5)
[08:26:31 -27919.252567] SLOW spr round 18 (radius: 10)
[08:27:15 -27917.285910] SLOW spr round 19 (radius: 5)
[08:28:02 -27917.279070] SLOW spr round 20 (radius: 10)
[08:28:46 -27917.278236] SLOW spr round 21 (radius: 15)
[08:29:44 -27917.278094] SLOW spr round 22 (radius: 20)
[08:30:56 -27917.278050] SLOW spr round 23 (radius: 25)
[08:32:23 -27917.278021] Model parameter optimization (eps = 0.100000)

[08:32:24] ML tree search #15, logLikelihood: -27917.267414

[08:32:24 -83232.601148] Initial branch length optimization
[08:32:25 -66899.406655] Model parameter optimization (eps = 10.000000)
[08:32:38 -66489.524778] AUTODETECT spr round 1 (radius: 5)
[08:33:16 -54544.561808] AUTODETECT spr round 2 (radius: 10)
[08:33:59 -45304.333347] AUTODETECT spr round 3 (radius: 15)
[08:34:47 -37417.121083] AUTODETECT spr round 4 (radius: 20)
[08:35:37 -34290.539504] AUTODETECT spr round 5 (radius: 25)
[08:36:27 -33864.180044] SPR radius for FAST iterations: 25 (autodetect)
[08:36:28 -33864.180044] Model parameter optimization (eps = 3.000000)
[08:36:35 -33783.603068] FAST spr round 1 (radius: 25)
[08:37:23 -29819.908172] FAST spr round 2 (radius: 25)
[08:38:04 -28199.505604] FAST spr round 3 (radius: 25)
[08:38:41 -28047.250509] FAST spr round 4 (radius: 25)
[08:39:17 -28014.463910] FAST spr round 5 (radius: 25)
[08:39:51 -28007.206557] FAST spr round 6 (radius: 25)
[08:40:24 -27999.564991] FAST spr round 7 (radius: 25)
[08:40:57 -27994.173469] FAST spr round 8 (radius: 25)
[08:41:30 -27993.348037] FAST spr round 9 (radius: 25)
[08:42:02 -27993.348009] Model parameter optimization (eps = 1.000000)
[08:42:06 -27989.545839] SLOW spr round 1 (radius: 5)
[08:42:46 -27978.574231] SLOW spr round 2 (radius: 5)
[08:43:26 -27978.192596] SLOW spr round 3 (radius: 5)
[08:44:04 -27978.191925] SLOW spr round 4 (radius: 10)
[08:44:45 -27974.558915] SLOW spr round 5 (radius: 5)
[08:45:34 -27968.155232] SLOW spr round 6 (radius: 5)
[08:46:17 -27968.154064] SLOW spr round 7 (radius: 10)
[08:46:59 -27968.153944] SLOW spr round 8 (radius: 15)
[08:47:57 -27963.387761] SLOW spr round 9 (radius: 5)
[08:48:47 -27959.747109] SLOW spr round 10 (radius: 5)
[08:49:31 -27959.747007] SLOW spr round 11 (radius: 10)
[08:50:13 -27959.746978] SLOW spr round 12 (radius: 15)
[08:51:10 -27959.746950] SLOW spr round 13 (radius: 20)
[08:52:22 -27956.076934] SLOW spr round 14 (radius: 5)
[08:53:12 -27955.863877] SLOW spr round 15 (radius: 5)
[08:53:56 -27955.863792] SLOW spr round 16 (radius: 10)
[08:54:39 -27955.863754] SLOW spr round 17 (radius: 15)
[08:55:35 -27955.863720] SLOW spr round 18 (radius: 20)
[08:56:45 -27955.863688] SLOW spr round 19 (radius: 25)
[08:58:11 -27955.325593] SLOW spr round 20 (radius: 5)
[08:59:02 -27954.278540] SLOW spr round 21 (radius: 5)
[08:59:49 -27923.472194] SLOW spr round 22 (radius: 5)
[09:00:30 -27917.423914] SLOW spr round 23 (radius: 5)
[09:01:10 -27917.418899] SLOW spr round 24 (radius: 10)
[09:01:50 -27917.418402] SLOW spr round 25 (radius: 15)
[09:02:47 -27917.418317] SLOW spr round 26 (radius: 20)
[09:03:58 -27917.418303] SLOW spr round 27 (radius: 25)
[09:05:26 -27917.418301] Model parameter optimization (eps = 0.100000)

[09:05:30] ML tree search #16, logLikelihood: -27917.314272

[09:05:30 -82650.056243] Initial branch length optimization
[09:05:31 -66846.423112] Model parameter optimization (eps = 10.000000)
[09:05:42 -66449.329056] AUTODETECT spr round 1 (radius: 5)
[09:06:18 -54352.568722] AUTODETECT spr round 2 (radius: 10)
[09:07:01 -44791.875496] AUTODETECT spr round 3 (radius: 15)
[09:07:47 -37710.825875] AUTODETECT spr round 4 (radius: 20)
[09:08:43 -34313.524271] AUTODETECT spr round 5 (radius: 25)
[09:09:40 -32452.650493] SPR radius for FAST iterations: 25 (autodetect)
[09:09:40 -32452.650493] Model parameter optimization (eps = 3.000000)
[09:09:48 -32390.676873] FAST spr round 1 (radius: 25)
[09:10:41 -28373.928359] FAST spr round 2 (radius: 25)
[09:11:23 -28042.602999] FAST spr round 3 (radius: 25)
[09:12:01 -27990.864409] FAST spr round 4 (radius: 25)
[09:12:34 -27986.645442] FAST spr round 5 (radius: 25)
[09:13:07 -27986.356084] FAST spr round 6 (radius: 25)
[09:13:39 -27986.355543] Model parameter optimization (eps = 1.000000)
[09:13:46 -27984.011257] SLOW spr round 1 (radius: 5)
[09:14:25 -27977.772721] SLOW spr round 2 (radius: 5)
[09:15:05 -27967.817735] SLOW spr round 3 (radius: 5)
[09:15:44 -27966.866802] SLOW spr round 4 (radius: 5)
[09:16:21 -27966.865996] SLOW spr round 5 (radius: 10)
[09:17:01 -27965.064661] SLOW spr round 6 (radius: 5)
[09:17:48 -27964.742379] SLOW spr round 7 (radius: 5)
[09:18:29 -27964.742200] SLOW spr round 8 (radius: 10)
[09:19:11 -27964.742154] SLOW spr round 9 (radius: 15)
[09:20:10 -27964.742138] SLOW spr round 10 (radius: 20)
[09:21:24 -27963.703420] SLOW spr round 11 (radius: 5)
[09:22:13 -27962.806484] SLOW spr round 12 (radius: 5)
[09:22:57 -27962.804831] SLOW spr round 13 (radius: 10)
[09:23:39 -27960.617662] SLOW spr round 14 (radius: 5)
[09:24:25 -27955.635967] SLOW spr round 15 (radius: 5)
[09:25:06 -27954.729053] SLOW spr round 16 (radius: 5)
[09:25:46 -27954.729004] SLOW spr round 17 (radius: 10)
[09:26:27 -27954.729004] SLOW spr round 18 (radius: 15)
[09:27:28 -27954.729003] SLOW spr round 19 (radius: 20)
[09:28:45 -27954.729003] SLOW spr round 20 (radius: 25)
[09:30:22 -27954.390168] SLOW spr round 21 (radius: 5)
[09:31:12 -27954.389968] SLOW spr round 22 (radius: 10)
[09:32:02 -27954.389965] SLOW spr round 23 (radius: 15)
[09:33:00 -27954.389964] SLOW spr round 24 (radius: 20)
[09:34:17 -27954.389964] SLOW spr round 25 (radius: 25)
[09:35:53 -27954.389963] Model parameter optimization (eps = 0.100000)

[09:35:55] ML tree search #17, logLikelihood: -27954.256961

[09:35:55 -82749.838916] Initial branch length optimization
[09:35:56 -66677.244129] Model parameter optimization (eps = 10.000000)
[09:36:08 -66269.217930] AUTODETECT spr round 1 (radius: 5)
[09:36:45 -53444.077649] AUTODETECT spr round 2 (radius: 10)
[09:37:26 -44204.292179] AUTODETECT spr round 3 (radius: 15)
[09:38:13 -39196.487065] AUTODETECT spr round 4 (radius: 20)
[09:39:07 -35850.737514] AUTODETECT spr round 5 (radius: 25)
[09:40:04 -33744.760090] SPR radius for FAST iterations: 25 (autodetect)
[09:40:04 -33744.760090] Model parameter optimization (eps = 3.000000)
[09:40:10 -33682.215872] FAST spr round 1 (radius: 25)
[09:40:59 -28378.406117] FAST spr round 2 (radius: 25)
[09:41:39 -28060.654665] FAST spr round 3 (radius: 25)
[09:42:16 -28035.286278] FAST spr round 4 (radius: 25)
[09:42:50 -28031.768939] FAST spr round 5 (radius: 25)
[09:43:22 -28031.768276] Model parameter optimization (eps = 1.000000)
[09:43:26 -28030.393580] SLOW spr round 1 (radius: 5)
[09:44:06 -28019.198943] SLOW spr round 2 (radius: 5)
[09:44:47 -28016.021752] SLOW spr round 3 (radius: 5)
[09:45:27 -28014.282871] SLOW spr round 4 (radius: 5)
[09:46:07 -28014.043672] SLOW spr round 5 (radius: 5)
[09:46:46 -28014.042907] SLOW spr round 6 (radius: 10)
[09:47:28 -28005.732043] SLOW spr round 7 (radius: 5)
[09:48:16 -28001.124138] SLOW spr round 8 (radius: 5)
[09:48:58 -28001.121671] SLOW spr round 9 (radius: 10)
[09:49:40 -27997.802140] SLOW spr round 10 (radius: 5)
[09:50:26 -27997.676088] SLOW spr round 11 (radius: 5)
[09:51:08 -27997.675409] SLOW spr round 12 (radius: 10)
[09:51:51 -27995.773660] SLOW spr round 13 (radius: 5)
[09:52:37 -27995.688173] SLOW spr round 14 (radius: 10)
[09:53:21 -27995.687069] SLOW spr round 15 (radius: 15)
[09:54:16 -27989.647132] SLOW spr round 16 (radius: 5)
[09:55:05 -27989.116255] SLOW spr round 17 (radius: 5)
[09:55:49 -27988.805748] SLOW spr round 18 (radius: 5)
[09:56:30 -27988.805113] SLOW spr round 19 (radius: 10)
[09:57:11 -27988.804463] SLOW spr round 20 (radius: 15)
[09:58:07 -27985.124988] SLOW spr round 21 (radius: 5)
[09:58:55 -27985.124294] SLOW spr round 22 (radius: 10)
[09:59:41 -27984.971704] SLOW spr round 23 (radius: 5)
[10:00:26 -27984.971611] SLOW spr round 24 (radius: 10)
[10:01:10 -27984.971609] SLOW spr round 25 (radius: 15)
[10:02:05 -27984.971609] SLOW spr round 26 (radius: 20)
[10:03:14 -27975.404169] SLOW spr round 27 (radius: 5)
[10:04:04 -27970.789898] SLOW spr round 28 (radius: 5)
[10:04:49 -27970.304841] SLOW spr round 29 (radius: 5)
[10:05:31 -27966.458507] SLOW spr round 30 (radius: 5)
[10:06:11 -27966.458301] SLOW spr round 31 (radius: 10)
[10:06:52 -27962.128948] SLOW spr round 32 (radius: 5)
[10:07:39 -27960.458916] SLOW spr round 33 (radius: 5)
[10:08:21 -27960.458336] SLOW spr round 34 (radius: 10)
[10:09:03 -27957.586311] SLOW spr round 35 (radius: 5)
[10:09:49 -27956.044386] SLOW spr round 36 (radius: 5)
[10:10:31 -27956.043082] SLOW spr round 37 (radius: 10)
[10:11:13 -27956.042871] SLOW spr round 38 (radius: 15)
[10:12:08 -27956.042826] SLOW spr round 39 (radius: 20)
[10:13:15 -27956.042815] SLOW spr round 40 (radius: 25)
[10:14:32 -27951.649628] SLOW spr round 41 (radius: 5)
[10:15:23 -27950.283544] SLOW spr round 42 (radius: 5)
[10:16:09 -27947.273561] SLOW spr round 43 (radius: 5)
[10:16:50 -27947.271466] SLOW spr round 44 (radius: 10)
[10:17:32 -27946.495131] SLOW spr round 45 (radius: 5)
[10:18:18 -27946.494695] SLOW spr round 46 (radius: 10)
[10:19:02 -27946.494683] SLOW spr round 47 (radius: 15)
[10:19:57 -27946.494681] SLOW spr round 48 (radius: 20)
[10:21:05 -27942.457193] SLOW spr round 49 (radius: 5)
[10:21:55 -27937.140492] SLOW spr round 50 (radius: 5)
[10:22:39 -27937.138945] SLOW spr round 51 (radius: 10)
[10:23:22 -27937.138874] SLOW spr round 52 (radius: 15)
[10:24:17 -27937.138870] SLOW spr round 53 (radius: 20)
[10:25:24 -27937.138870] SLOW spr round 54 (radius: 25)
[10:26:40 -27937.138870] Model parameter optimization (eps = 0.100000)

[10:26:43] ML tree search #18, logLikelihood: -27936.855335

[10:26:43 -83495.841579] Initial branch length optimization
[10:26:44 -67382.749222] Model parameter optimization (eps = 10.000000)
[10:26:57 -66995.327754] AUTODETECT spr round 1 (radius: 5)
[10:27:34 -53864.887542] AUTODETECT spr round 2 (radius: 10)
[10:28:17 -44456.294858] AUTODETECT spr round 3 (radius: 15)
[10:29:01 -39543.687310] AUTODETECT spr round 4 (radius: 20)
[10:29:50 -38296.569442] AUTODETECT spr round 5 (radius: 25)
[10:30:49 -34844.764770] SPR radius for FAST iterations: 25 (autodetect)
[10:30:49 -34844.764770] Model parameter optimization (eps = 3.000000)
[10:30:57 -34791.206258] FAST spr round 1 (radius: 25)
[10:31:51 -30768.241423] FAST spr round 2 (radius: 25)
[10:32:37 -30137.619881] FAST spr round 3 (radius: 25)
[10:33:17 -29591.866899] FAST spr round 4 (radius: 25)
[10:33:56 -28941.432614] FAST spr round 5 (radius: 25)
[10:34:32 -28690.860970] FAST spr round 6 (radius: 25)
[10:35:07 -28552.306322] FAST spr round 7 (radius: 25)
[10:35:40 -28536.615420] FAST spr round 8 (radius: 25)
[10:36:12 -28536.613568] Model parameter optimization (eps = 1.000000)
[10:36:16 -28534.140808] SLOW spr round 1 (radius: 5)
[10:36:57 -28524.191222] SLOW spr round 2 (radius: 5)
[10:37:37 -28522.791920] SLOW spr round 3 (radius: 5)
[10:38:16 -28522.662782] SLOW spr round 4 (radius: 5)
[10:38:55 -28522.662461] SLOW spr round 5 (radius: 10)
[10:39:37 -28520.013191] SLOW spr round 6 (radius: 5)
[10:40:25 -28517.752210] SLOW spr round 7 (radius: 5)
[10:41:08 -28517.751900] SLOW spr round 8 (radius: 10)
[10:41:51 -28517.751755] SLOW spr round 9 (radius: 15)
[10:42:59 -28176.512891] SLOW spr round 10 (radius: 5)
[10:43:50 -27995.895875] SLOW spr round 11 (radius: 5)
[10:44:36 -27976.670055] SLOW spr round 12 (radius: 5)
[10:45:19 -27971.686927] SLOW spr round 13 (radius: 5)
[10:46:00 -27970.807247] SLOW spr round 14 (radius: 5)
[10:46:40 -27970.803865] SLOW spr round 15 (radius: 10)
[10:47:21 -27969.545867] SLOW spr round 16 (radius: 5)
[10:48:09 -27969.086060] SLOW spr round 17 (radius: 5)
[10:48:52 -27969.085055] SLOW spr round 18 (radius: 10)
[10:49:35 -27968.670661] SLOW spr round 19 (radius: 5)
[10:50:22 -27968.670212] SLOW spr round 20 (radius: 10)
[10:51:07 -27968.670183] SLOW spr round 21 (radius: 15)
[10:52:06 -27959.413873] SLOW spr round 22 (radius: 5)
[10:52:55 -27959.413235] SLOW spr round 23 (radius: 10)
[10:53:42 -27959.413050] SLOW spr round 24 (radius: 15)
[10:54:41 -27959.412995] SLOW spr round 25 (radius: 20)
[10:55:59 -27955.044277] SLOW spr round 26 (radius: 5)
[10:56:50 -27954.440980] SLOW spr round 27 (radius: 5)
[10:57:34 -27954.439119] SLOW spr round 28 (radius: 10)
[10:58:18 -27954.438915] SLOW spr round 29 (radius: 15)
[10:59:17 -27954.438891] SLOW spr round 30 (radius: 20)
[11:00:34 -27954.438887] SLOW spr round 31 (radius: 25)
[11:02:07 -27953.421479] SLOW spr round 32 (radius: 5)
[11:02:58 -27953.420798] SLOW spr round 33 (radius: 10)
[11:03:47 -27953.420685] SLOW spr round 34 (radius: 15)
[11:04:45 -27953.420652] SLOW spr round 35 (radius: 20)
[11:06:02 -27953.420644] SLOW spr round 36 (radius: 25)
[11:07:35 -27953.420642] Model parameter optimization (eps = 0.100000)

[11:07:41] ML tree search #19, logLikelihood: -27953.187498

[11:07:41 -82613.628788] Initial branch length optimization
[11:07:43 -66770.078078] Model parameter optimization (eps = 10.000000)
[11:07:56 -66390.690603] AUTODETECT spr round 1 (radius: 5)
[11:08:33 -53051.426932] AUTODETECT spr round 2 (radius: 10)
[11:09:16 -44311.600038] AUTODETECT spr round 3 (radius: 15)
[11:10:02 -37920.875646] AUTODETECT spr round 4 (radius: 20)
[11:10:53 -35815.839063] AUTODETECT spr round 5 (radius: 25)
[11:11:52 -34456.963143] SPR radius for FAST iterations: 25 (autodetect)
[11:11:52 -34456.963143] Model parameter optimization (eps = 3.000000)
[11:12:01 -34390.323967] FAST spr round 1 (radius: 25)
[11:12:57 -28645.103602] FAST spr round 2 (radius: 25)
[11:13:41 -28138.028420] FAST spr round 3 (radius: 25)
[11:14:20 -28051.895959] FAST spr round 4 (radius: 25)
[11:14:58 -28033.850063] FAST spr round 5 (radius: 25)
[11:15:32 -28028.974488] FAST spr round 6 (radius: 25)
[11:16:05 -28028.468676] FAST spr round 7 (radius: 25)
[11:16:37 -28028.467449] Model parameter optimization (eps = 1.000000)
[11:16:50 -28023.700307] SLOW spr round 1 (radius: 5)
[11:17:31 -27954.253716] SLOW spr round 2 (radius: 5)
[11:18:10 -27948.100111] SLOW spr round 3 (radius: 5)
[11:18:49 -27947.130733] SLOW spr round 4 (radius: 5)
[11:19:27 -27947.130597] SLOW spr round 5 (radius: 10)
[11:20:08 -27946.727227] SLOW spr round 6 (radius: 5)
[11:20:55 -27946.726039] SLOW spr round 7 (radius: 10)
[11:21:40 -27946.725918] SLOW spr round 8 (radius: 15)
[11:22:36 -27945.011527] SLOW spr round 9 (radius: 5)
[11:23:25 -27944.655481] SLOW spr round 10 (radius: 5)
[11:24:07 -27944.654988] SLOW spr round 11 (radius: 10)
[11:24:49 -27944.654855] SLOW spr round 12 (radius: 15)
[11:25:43 -27944.654806] SLOW spr round 13 (radius: 20)
[11:26:48 -27944.517154] SLOW spr round 14 (radius: 5)
[11:27:37 -27944.515455] SLOW spr round 15 (radius: 10)
[11:28:23 -27944.515221] SLOW spr round 16 (radius: 15)
[11:29:16 -27944.515165] SLOW spr round 17 (radius: 20)
[11:30:20 -27943.848316] SLOW spr round 18 (radius: 5)
[11:31:09 -27942.932440] SLOW spr round 19 (radius: 5)
[11:31:52 -27942.929773] SLOW spr round 20 (radius: 10)
[11:32:35 -27942.928855] SLOW spr round 21 (radius: 15)
[11:33:29 -27942.803518] SLOW spr round 22 (radius: 5)
[11:34:17 -27942.773050] SLOW spr round 23 (radius: 10)
[11:35:02 -27942.772538] SLOW spr round 24 (radius: 15)
[11:35:55 -27942.772288] SLOW spr round 25 (radius: 20)
[11:37:01 -27935.119254] SLOW spr round 26 (radius: 5)
[11:37:50 -27935.119244] SLOW spr round 27 (radius: 10)
[11:38:40 -27927.387020] SLOW spr round 28 (radius: 5)
[11:39:25 -27927.281721] SLOW spr round 29 (radius: 5)
[11:40:06 -27927.162067] SLOW spr round 30 (radius: 5)
[11:40:45 -27927.162049] SLOW spr round 31 (radius: 10)
[11:41:26 -27924.869171] SLOW spr round 32 (radius: 5)
[11:42:12 -27924.385248] SLOW spr round 33 (radius: 5)
[11:42:53 -27924.383753] SLOW spr round 34 (radius: 10)
[11:43:34 -27924.383601] SLOW spr round 35 (radius: 15)
[11:44:30 -27921.664351] SLOW spr round 36 (radius: 5)
[11:45:19 -27921.125981] SLOW spr round 37 (radius: 5)
[11:46:01 -27921.125005] SLOW spr round 38 (radius: 10)
[11:46:44 -27921.124909] SLOW spr round 39 (radius: 15)
[11:47:41 -27921.124893] SLOW spr round 40 (radius: 20)
[11:48:51 -27901.230633] SLOW spr round 41 (radius: 5)
[11:49:41 -27900.983551] SLOW spr round 42 (radius: 5)
[11:50:26 -27900.982284] SLOW spr round 43 (radius: 10)
[11:51:09 -27900.982221] SLOW spr round 44 (radius: 15)
[11:52:06 -27900.982216] SLOW spr round 45 (radius: 20)
[11:53:14 -27900.982216] SLOW spr round 46 (radius: 25)
[11:54:38 -27900.982212] Model parameter optimization (eps = 0.100000)

[11:54:42] ML tree search #20, logLikelihood: -27900.596903


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.070992,0.303178) (0.000071,0.267316) (0.219012,0.653797) (0.709925,1.176559) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -27880.988564

AIC score: 58663.977129 / AICc score: 4272367.977129 / BIC score: 61678.483960
Free parameters (model + branch lengths): 1451

WARNING: Number of free parameters (K=1451) is larger than alignment size (n=59).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 204 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9BTC0/3_mltree/Q9BTC0.raxml.bestTreeCollapsed
Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9BTC0/3_mltree/Q9BTC0.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9BTC0/3_mltree/Q9BTC0.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9BTC0/3_mltree/Q9BTC0.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q9BTC0/3_mltree/Q9BTC0.raxml.log

Analysis started: 06-Jul-2021 15:39:10 / finished: 07-Jul-2021 03:33:53

Elapsed time: 42883.036 seconds

Consumed energy: 2710.761 Wh (= 14 km in an electric car, or 68 km with an e-scooter!)