RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 18:40:09 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BSK1/2_msa/Q9BSK1_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BSK1/3_mltree/Q9BSK1.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BSK1/4_raxmlng_ancestral/Q9BSK1 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622648409 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BSK1/2_msa/Q9BSK1_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 485 sites WARNING: Sequences tr_M3Y279_M3Y279_MUSPF_9669 and tr_J9NRJ4_J9NRJ4_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Y279_M3Y279_MUSPF_9669 and tr_A0A2U3XJ70_A0A2U3XJ70_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Y279_M3Y279_MUSPF_9669 and tr_A0A2Y9L647_A0A2Y9L647_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y279_M3Y279_MUSPF_9669 and tr_A0A384DRI4_A0A384DRI4_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_J9NZD8_J9NZD8_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_F6UAE9_F6UAE9_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_G1LSL0_G1LSL0_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2I2UHS2_A0A2I2UHS2_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2U3Y1N2_A0A2U3Y1N2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2Y9DM21_A0A2Y9DM21_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A2Y9KFZ4_A0A2Y9KFZ4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YWT0_M3YWT0_MUSPF_9669 and tr_A0A384CDE3_A0A384CDE3_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I3G6J4_A0A2I3G6J4_NOMLE_61853 and tr_A0A2I2YKC9_A0A2I2YKC9_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3G6J4_A0A2I3G6J4_NOMLE_61853 and tr_A0A2I3TJW6_A0A2I3TJW6_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3G6J4_A0A2I3G6J4_NOMLE_61853 and tr_A0A2R9CIJ9_A0A2R9CIJ9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RAS0_G1RAS0_NOMLE_61853 and tr_F7GDG2_F7GDG2_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RAS0_G1RAS0_NOMLE_61853 and tr_U3DKP1_U3DKP1_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1RAS0_G1RAS0_NOMLE_61853 and tr_A0A096MVU8_A0A096MVU8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RAS0_G1RAS0_NOMLE_61853 and tr_A0A0D9S896_A0A0D9S896_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RAS0_G1RAS0_NOMLE_61853 and tr_A0A2K5LPR7_A0A2K5LPR7_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RAS0_G1RAS0_NOMLE_61853 and tr_A0A2K6BKJ1_A0A2K6BKJ1_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RAS0_G1RAS0_NOMLE_61853 and tr_A0A2K5YGK7_A0A2K5YGK7_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1P9M2_G1P9M2_MYOLU_59463 and tr_A0A2U3VJB5_A0A2U3VJB5_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A2I2Z5M2_A0A2I2Z5M2_GORGO_9595 and tr_A0A2J8SJ28_A0A2J8SJ28_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2Z5M2_A0A2I2Z5M2_GORGO_9595 and sp_Q9C0F3_ZN436_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZTG0_A0A2I2ZTG0_GORGO_9595 and sp_P17036_ZNF3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZTM7_A0A2I2ZTM7_GORGO_9595 and tr_H2R058_H2R058_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZTM7_A0A2I2ZTM7_GORGO_9595 and sp_Q8N9K5_ZN565_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RBJ1_G3RBJ1_GORGO_9595 and tr_H2QYI9_H2QYI9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RBJ1_G3RBJ1_GORGO_9595 and tr_A0A2R9CKQ3_A0A2R9CKQ3_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8S1J3_A0A2J8S1J3_PONAB_9601 and tr_A0A1D5Q092_A0A1D5Q092_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2J8S1J3_A0A2J8S1J3_PONAB_9601 and tr_G7PZ38_G7PZ38_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2J8S1J3_A0A2J8S1J3_PONAB_9601 and tr_A0A0A0MVV1_A0A0A0MVV1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2J8S1J3_A0A2J8S1J3_PONAB_9601 and tr_A0A0D9R661_A0A0D9R661_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2J8S1J3_A0A2J8S1J3_PONAB_9601 and tr_A0A2K5P4U7_A0A2K5P4U7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2J8S1J3_A0A2J8S1J3_PONAB_9601 and tr_A0A2K6CGA3_A0A2K6CGA3_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2NJ84_H2NJ84_PONAB_9601 and tr_H2Q781_H2Q781_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2NJ84_H2NJ84_PONAB_9601 and sp_P51523_ZNF84_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2NJ84_H2NJ84_PONAB_9601 and tr_A0A2R8Z7P5_A0A2R8Z7P5_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3SMD1_A0A2I3SMD1_PANTR_9598 and tr_A0A2R9CB85_A0A2R9CB85_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3TA29_A0A2I3TA29_PANTR_9598 and sp_A6NM28_ZFP92_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3TA29_A0A2I3TA29_PANTR_9598 and tr_A0A2R9A217_A0A2R9A217_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3THY5_A0A2I3THY5_PANTR_9598 and tr_A0A2R9ADR1_A0A2R9ADR1_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3TWI2_A0A2I3TWI2_PANTR_9598 and tr_A0A2R9C949_A0A2R9C949_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8JDP3_A0A2J8JDP3_PANTR_9598 and tr_A0A2R8ZR33_A0A2R8ZR33_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8JLK3_A0A2J8JLK3_PANTR_9598 and sp_Q96NG8_ZN582_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2J8JLK3_A0A2J8JLK3_PANTR_9598 and tr_A0A2R9A954_A0A2R9A954_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2R0W5_H2R0W5_PANTR_9598 and tr_A0A2R9BGK0_A0A2R9BGK0_PANPA_9597 are exactly identical! WARNING: Sequences tr_W5P5W2_W5P5W2_SHEEP_9940 and sp_A2VDQ7_ZN420_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5P5W2_W5P5W2_SHEEP_9940 and tr_F1MML9_F1MML9_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PCH7_W5PCH7_SHEEP_9940 and tr_E1BMZ4_E1BMZ4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A1D5Q321_A0A1D5Q321_MACMU_9544 and tr_A0A0A0MUX3_A0A0A0MUX3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5Q321_A0A1D5Q321_MACMU_9544 and tr_A0A2K5MB55_A0A2K5MB55_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5Q321_A0A1D5Q321_MACMU_9544 and tr_A0A2K6B3J6_A0A2K6B3J6_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6QVW9_F6QVW9_MACMU_9544 and tr_A0A0A0MUP5_A0A0A0MUP5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6QVW9_F6QVW9_MACMU_9544 and tr_A0A2K5MYE8_A0A2K5MYE8_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6QVW9_F6QVW9_MACMU_9544 and tr_A0A2K5ZQH5_A0A2K5ZQH5_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6RKS7_F6RKS7_MACMU_9544 and tr_G7PJI4_G7PJI4_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6RKS7_F6RKS7_MACMU_9544 and tr_A0A2I3LQ94_A0A2I3LQ94_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6RKS7_F6RKS7_MACMU_9544 and tr_A0A0D9S5S2_A0A0D9S5S2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6RKS7_F6RKS7_MACMU_9544 and tr_A0A2K5LZF1_A0A2K5LZF1_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6RKS7_F6RKS7_MACMU_9544 and tr_A0A2K5YAY2_A0A2K5YAY2_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6UPX1_F6UPX1_MACMU_9544 and tr_A0A2K5N4G8_A0A2K5N4G8_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6UPX1_F6UPX1_MACMU_9544 and tr_A0A2K6D4D0_A0A2K6D4D0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6UPX1_F6UPX1_MACMU_9544 and tr_A0A2K5ZUP9_A0A2K5ZUP9_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6VIB6_F6VIB6_MACMU_9544 and tr_G7PZB3_G7PZB3_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6VIB6_F6VIB6_MACMU_9544 and tr_A0A2K6BZF6_A0A2K6BZF6_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6X482_F6X482_MACMU_9544 and tr_G7PER6_G7PER6_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6X482_F6X482_MACMU_9544 and tr_A0A2K6C6G6_A0A2K6C6G6_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7CX29_F7CX29_MACMU_9544 and tr_G7PZ93_G7PZ93_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7F0N9_F7F0N9_MACMU_9544 and tr_A0A2K6B2T5_A0A2K6B2T5_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7F0N9_F7F0N9_MACMU_9544 and tr_A0A2K5YGT5_A0A2K5YGT5_MANLE_9568 are exactly identical! WARNING: Sequences tr_G7MGB2_G7MGB2_MACMU_9544 and tr_G7NUD8_G7NUD8_MACFA_9541 are exactly identical! WARNING: Sequences tr_G7MGB2_G7MGB2_MACMU_9544 and tr_A0A2K6E7J7_A0A2K6E7J7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A287AY13_A0A287AY13_PIG_9823 and tr_A0A2Y9LKY1_A0A2Y9LKY1_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A287AY13_A0A287AY13_PIG_9823 and tr_A0A383ZJ36_A0A383ZJ36_BALAS_310752 are exactly identical! WARNING: Sequences tr_G7P0C3_G7P0C3_MACFA_9541 and tr_A0A2K6DHH7_A0A2K6DHH7_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7PJI5_G7PJI5_MACFA_9541 and tr_A0A2K6AK43_A0A2K6AK43_MANLE_9568 are exactly identical! WARNING: Sequences tr_F1N1Y9_F1N1Y9_BOVIN_9913 and sp_Q29RZ4_ZNF2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A096MQ78_A0A096MQ78_PAPAN_9555 and tr_A0A2K5ZGD5_A0A2K5ZGD5_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A096MYB7_A0A096MYB7_PAPAN_9555 and tr_A0A2K6AAT3_A0A2K6AAT3_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A096P472_A0A096P472_PAPAN_9555 and tr_A0A2K5ZDY2_A0A2K5ZDY2_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0A0MVK3_A0A0A0MVK3_PAPAN_9555 and tr_A0A2K6BJ33_A0A2K6BJ33_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2K5N5Y3_A0A2K5N5Y3_CERAT_9531 and tr_A0A2K5XNG6_A0A2K5XNG6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4B5W9_A0A2U4B5W9_TURTR_9739 and tr_A0A383Z1Q2_A0A383Z1Q2_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4BKA8_A0A2U4BKA8_TURTR_9739 and tr_A0A2U4BKI1_A0A2U4BKI1_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2U4CGU5_A0A2U4CGU5_TURTR_9739 and tr_A0A2Y9QA60_A0A2Y9QA60_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4CGU5_A0A2U4CGU5_TURTR_9739 and tr_A0A2Y9FJE6_A0A2Y9FJE6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3VZ15_A0A2U3VZ15_ODORO_9708 and tr_A0A2U3YM83_A0A2U3YM83_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2Y9PC28_A0A2Y9PC28_DELLE_9749 and tr_A0A2Y9F072_A0A2Y9F072_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 90 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BSK1/4_raxmlng_ancestral/Q9BSK1.raxml.reduced.phy Alignment comprises 1 partitions and 485 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 485 Gaps: 24.38 % Invariant sites: 1.86 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BSK1/4_raxmlng_ancestral/Q9BSK1.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BSK1/3_mltree/Q9BSK1.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 122 / 9760 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -148468.520532 [00:00:00 -148468.520532] Initial branch length optimization [00:00:01 -147676.954497] Model parameter optimization (eps = 0.100000) [00:00:39] Tree #1, final logLikelihood: -147433.362788 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.147707,0.208286) (0.115829,0.492629) (0.424757,0.883660) (0.311707,1.722238) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BSK1/4_raxmlng_ancestral/Q9BSK1.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BSK1/4_raxmlng_ancestral/Q9BSK1.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BSK1/4_raxmlng_ancestral/Q9BSK1.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q9BSK1/4_raxmlng_ancestral/Q9BSK1.raxml.log Analysis started: 02-Jun-2021 18:40:09 / finished: 02-Jun-2021 18:40:53 Elapsed time: 44.056 seconds Consumed energy: 2.919 Wh