RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 03-Jun-2021 02:15:11 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99972/2_msa/Q99972_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99972/3_mltree/Q99972.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99972/4_raxmlng_ancestral/Q99972 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622675711 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99972/2_msa/Q99972_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 504 sites WARNING: Sequences tr_A0A1D5NUH8_A0A1D5NUH8_CHICK_9031 and tr_A0A1V4JV46_A0A1V4JV46_PATFA_372326 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_H0Z6H8_H0Z6H8_TAEGU_59729 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_U3JG49_U3JG49_FICAL_59894 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A1V4J5Y9_A0A1V4J5Y9_PATFA_372326 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A218V6G4_A0A218V6G4_9PASE_299123 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A226NMR4_A0A226NMR4_CALSU_9009 are exactly identical! WARNING: Sequences sp_P63056_NOE3_MOUSE_10090 and sp_P63057_NOE3_RAT_10116 are exactly identical! WARNING: Sequences sp_Q80TS3_AGRL3_MOUSE_10090 and tr_A0A2I2Y9M5_A0A2I2Y9M5_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q80TS3_AGRL3_MOUSE_10090 and tr_A0A2I3SPU9_A0A2I3SPU9_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q80TS3_AGRL3_MOUSE_10090 and sp_Q9HAR2_AGRL3_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q80TS3_AGRL3_MOUSE_10090 and tr_A0A1D5Q5W8_A0A1D5Q5W8_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q80TS3_AGRL3_MOUSE_10090 and tr_A0A2I3LF52_A0A2I3LF52_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q80TS3_AGRL3_MOUSE_10090 and tr_A0A1U7UKW4_A0A1U7UKW4_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q80TS3_AGRL3_MOUSE_10090 and tr_A0A2K6BMB7_A0A2K6BMB7_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q80TS3_AGRL3_MOUSE_10090 and tr_A0A2R9BN58_A0A2R9BN58_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YH39_M3YH39_MUSPF_9669 and tr_E2RKR8_E2RKR8_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YH39_M3YH39_MUSPF_9669 and tr_A0A2U3YD84_A0A2U3YD84_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YH39_M3YH39_MUSPF_9669 and tr_A0A384C200_A0A384C200_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I3GMS1_A0A2I3GMS1_NOMLE_61853 and tr_H2N6Y2_H2N6Y2_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3GMS1_A0A2I3GMS1_NOMLE_61853 and tr_A0A2I3RYF0_A0A2I3RYF0_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GMS1_A0A2I3GMS1_NOMLE_61853 and sp_O95490_AGRL2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GMS1_A0A2I3GMS1_NOMLE_61853 and tr_A0A2R8ZYR9_A0A2R8ZYR9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RMV4_G1RMV4_NOMLE_61853 and tr_G3RLQ0_G3RLQ0_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RMV4_G1RMV4_NOMLE_61853 and tr_H2PZI2_H2PZI2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RMV4_G1RMV4_NOMLE_61853 and sp_Q96PB7_NOE3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RMV4_G1RMV4_NOMLE_61853 and tr_F7H3M5_F7H3M5_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RMV4_G1RMV4_NOMLE_61853 and tr_G7NV38_G7NV38_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RMV4_G1RMV4_NOMLE_61853 and tr_A0A096MRZ8_A0A096MRZ8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RMV4_G1RMV4_NOMLE_61853 and tr_A0A2K5KH60_A0A2K5KH60_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RMV4_G1RMV4_NOMLE_61853 and tr_A0A2K6DK30_A0A2K6DK30_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RMV4_G1RMV4_NOMLE_61853 and tr_A0A2K6A4D5_A0A2K6A4D5_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RMV4_G1RMV4_NOMLE_61853 and tr_A0A2R9BAK3_A0A2R9BAK3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1NTH5_G1NTH5_MYOLU_59463 and tr_E2R3S4_E2R3S4_CANLF_9615 are exactly identical! WARNING: Sequences tr_G1NTH5_G1NTH5_MYOLU_59463 and sp_O97831_AGRL1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1NTH5_G1NTH5_MYOLU_59463 and tr_A0A2U3VUI5_A0A2U3VUI5_ODORO_9708 are exactly identical! WARNING: Sequences tr_G3QT74_G3QT74_GORGO_9595 and tr_A0A2I3T087_A0A2I3T087_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QT74_G3QT74_GORGO_9595 and tr_A0A2R8MGZ3_A0A2R8MGZ3_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3QT74_G3QT74_GORGO_9595 and tr_A0A2I3NA02_A0A2I3NA02_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QT74_G3QT74_GORGO_9595 and tr_A0A2K5LIV9_A0A2K5LIV9_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2NXS9_H2NXS9_PONAB_9601 and tr_H0WR63_H0WR63_OTOGA_30611 are exactly identical! WARNING: Sequences tr_H2NXS9_H2NXS9_PONAB_9601 and tr_U3FRU9_U3FRU9_CALJA_9483 are exactly identical! WARNING: Sequences tr_H2NXS9_H2NXS9_PONAB_9601 and tr_A0A0D9R202_A0A0D9R202_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2NXS9_H2NXS9_PONAB_9601 and tr_A0A2K6A057_A0A2K6A057_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1T5U9_G1T5U9_RABIT_9986 and tr_A0A287AE93_A0A287AE93_PIG_9823 are exactly identical! WARNING: Sequences tr_E2RQL9_E2RQL9_CANLF_9615 and tr_A0A2I2V1I2_A0A2I2V1I2_FELCA_9685 are exactly identical! WARNING: Sequences tr_E2RQL9_E2RQL9_CANLF_9615 and tr_A0A2U3ZGT2_A0A2U3ZGT2_ODORO_9708 are exactly identical! WARNING: Sequences tr_E2RQL9_E2RQL9_CANLF_9615 and tr_A0A2U3X9R4_A0A2U3X9R4_LEPWE_9713 are exactly identical! WARNING: Sequences tr_H2R1M0_H2R1M0_PANTR_9598 and sp_Q99784_NOE1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2R1M0_H2R1M0_PANTR_9598 and tr_A0A2R8PE66_A0A2R8PE66_CALJA_9483 are exactly identical! WARNING: Sequences tr_H2R1M0_H2R1M0_PANTR_9598 and tr_A0A2I3LPX1_A0A2I3LPX1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_W5P777_W5P777_SHEEP_9940 and tr_F1MGL8_F1MGL8_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PVX9_W5PVX9_SHEEP_9940 and tr_H0X0W9_H0X0W9_OTOGA_30611 are exactly identical! WARNING: Sequences tr_W5QAR8_W5QAR8_SHEEP_9940 and tr_A0A1S3WNZ2_A0A1S3WNZ2_ERIEU_9365 are exactly identical! WARNING: Sequences tr_W5QAR8_W5QAR8_SHEEP_9940 and tr_A0A2Y9G031_A0A2Y9G031_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q568Y7_NOE2_RAT_10116 and tr_A0A1U7QT73_A0A1U7QT73_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A3B5Q1T1_A0A3B5Q1T1_XIPMA_8083 and tr_A0A087X8T5_A0A087X8T5_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2SYC3_H2SYC3_TAKRU_31033 and tr_H3DMI7_H3DMI7_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A1D5QCB9_A0A1D5QCB9_MACMU_9544 and tr_A0A2K6CHL5_A0A2K6CHL5_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6V8Y4_F6V8Y4_MACMU_9544 and tr_A0A096P0L8_A0A096P0L8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6V8Y4_F6V8Y4_MACMU_9544 and tr_A0A2K6AUU2_A0A2K6AUU2_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7HED3_F7HED3_MACMU_9544 and tr_F7IMA1_F7IMA1_CALJA_9483 are exactly identical! WARNING: Sequences tr_F7HED3_F7HED3_MACMU_9544 and tr_G7NX23_G7NX23_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7HED3_F7HED3_MACMU_9544 and tr_A0A2I3LRM3_A0A2I3LRM3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7HED3_F7HED3_MACMU_9544 and tr_A0A2K5LJ33_A0A2K5LJ33_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7HED3_F7HED3_MACMU_9544 and tr_A0A2K6DDZ5_A0A2K6DDZ5_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7HED3_F7HED3_MACMU_9544 and tr_A0A2K5YFR8_A0A2K5YFR8_MANLE_9568 are exactly identical! WARNING: Sequences tr_G5BYT1_G5BYT1_HETGA_10181 and tr_L5K5D5_L5K5D5_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G3T4H4_G3T4H4_LOXAF_9785 and tr_A0A2U3X6I5_A0A2U3X6I5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G3T4H4_G3T4H4_LOXAF_9785 and tr_A0A2Y9QBQ6_A0A2Y9QBQ6_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A2I2U0D3_A0A2I2U0D3_FELCA_9685 and tr_A0A2Y9IVL9_A0A2Y9IVL9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_U3IQ19_U3IQ19_ANAPL_8839 and tr_A0A091F9S6_A0A091F9S6_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3IQ19_U3IQ19_ANAPL_8839 and tr_A0A091JG19_A0A091JG19_EGRGA_188379 are exactly identical! WARNING: Sequences tr_U3IQ19_U3IQ19_ANAPL_8839 and tr_A0A091VTL0_A0A091VTL0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_U3IQ19_U3IQ19_ANAPL_8839 and tr_A0A087R4Q6_A0A087R4Q6_APTFO_9233 are exactly identical! WARNING: Sequences tr_U3IQ19_U3IQ19_ANAPL_8839 and tr_A0A093JB84_A0A093JB84_STRCA_441894 are exactly identical! WARNING: Sequences tr_U3IQ19_U3IQ19_ANAPL_8839 and tr_A0A091XVL2_A0A091XVL2_OPIHO_30419 are exactly identical! WARNING: Sequences tr_U3IQ19_U3IQ19_ANAPL_8839 and tr_A0A099ZKC3_A0A099ZKC3_TINGU_94827 are exactly identical! WARNING: Sequences tr_U3IQ19_U3IQ19_ANAPL_8839 and tr_A0A0A0B119_A0A0A0B119_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A096N7V9_A0A096N7V9_PAPAN_9555 and tr_A0A2K5KWD1_A0A2K5KWD1_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0A0MU59_A0A0A0MU59_PAPAN_9555 and tr_A0A2K6AUX8_A0A2K6AUX8_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A091FUK3_A0A091FUK3_CORBR_85066 and tr_A0A091JSW7_A0A091JSW7_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A091FUK3_A0A091FUK3_CORBR_85066 and tr_A0A087QR75_A0A087QR75_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091FUK3_A0A091FUK3_CORBR_85066 and tr_A0A093HT66_A0A093HT66_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091FUK3_A0A091FUK3_CORBR_85066 and tr_A0A091WPB5_A0A091WPB5_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091FUK3_A0A091FUK3_CORBR_85066 and tr_A0A091FJU0_A0A091FJU0_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091FUK3_A0A091FUK3_CORBR_85066 and tr_A0A0A0AHL1_A0A0A0AHL1_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091FUK3_A0A091FUK3_CORBR_85066 and tr_A0A091HM19_A0A091HM19_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091VKJ3_A0A091VKJ3_OPIHO_30419 and tr_A0A091GAW7_A0A091GAW7_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A2D0QEZ6_A0A2D0QEZ6_ICTPU_7998 and tr_A0A2D0QHD6_A0A2D0QHD6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QFZ6_A0A2D0QFZ6_ICTPU_7998 and tr_A0A2D0QHE2_A0A2D0QHE2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QFZ6_A0A2D0QFZ6_ICTPU_7998 and tr_A0A2D0QI94_A0A2D0QI94_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RR99_A0A2D0RR99_ICTPU_7998 and tr_A0A2D0RRB1_A0A2D0RRB1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RR99_A0A2D0RR99_ICTPU_7998 and tr_A0A2D0RRB5_A0A2D0RRB5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RR99_A0A2D0RR99_ICTPU_7998 and tr_A0A2D0RS89_A0A2D0RS89_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RR99_A0A2D0RR99_ICTPU_7998 and tr_A0A2D0RSV7_A0A2D0RSV7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4A2B1_A0A2U4A2B1_TURTR_9739 and tr_A0A2Y9NNG2_A0A2Y9NNG2_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4A2B1_A0A2U4A2B1_TURTR_9739 and tr_A0A383ZHX9_A0A383ZHX9_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U3WNV9_A0A2U3WNV9_ODORO_9708 and tr_A0A2U3Y7J1_A0A2U3Y7J1_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2Y9MD40_A0A2Y9MD40_DELLE_9749 and tr_A0A2Y9TDL3_A0A2Y9TDL3_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9PBS1_A0A2Y9PBS1_DELLE_9749 and tr_A0A2Y9EWD3_A0A2Y9EWD3_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 100 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99972/4_raxmlng_ancestral/Q99972.raxml.reduced.phy Alignment comprises 1 partitions and 504 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 504 Gaps: 26.16 % Invariant sites: 0.40 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99972/4_raxmlng_ancestral/Q99972.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99972/3_mltree/Q99972.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 126 / 10080 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -137030.148407 [00:00:00 -137030.148407] Initial branch length optimization [00:00:01 -122799.180489] Model parameter optimization (eps = 0.100000) [00:00:44] Tree #1, final logLikelihood: -122512.231785 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.104952,0.236354) (0.149657,0.292109) (0.444539,0.788831) (0.300852,1.930557) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99972/4_raxmlng_ancestral/Q99972.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99972/4_raxmlng_ancestral/Q99972.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99972/4_raxmlng_ancestral/Q99972.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99972/4_raxmlng_ancestral/Q99972.raxml.log Analysis started: 03-Jun-2021 02:15:11 / finished: 03-Jun-2021 02:16:00 Elapsed time: 49.621 seconds Consumed energy: 2.163 Wh