RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 02-Jun-2021 18:09:39 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99593/2_msa/Q99593_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99593/3_mltree/Q99593.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99593/4_raxmlng_ancestral/Q99593 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622646579 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99593/2_msa/Q99593_nogap_msa.fasta [00:00:00] Loaded alignment with 996 taxa and 518 sites WARNING: Sequences tr_M3XR34_M3XR34_MUSPF_9669 and tr_G1T321_G1T321_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3XR34_M3XR34_MUSPF_9669 and tr_E2RL25_E2RL25_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XR34_M3XR34_MUSPF_9669 and tr_A0A2I2UY24_A0A2I2UY24_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XR34_M3XR34_MUSPF_9669 and tr_A0A2U3WRJ7_A0A2U3WRJ7_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XR34_M3XR34_MUSPF_9669 and tr_A0A2Y9IWN0_A0A2Y9IWN0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y900_M3Y900_MUSPF_9669 and tr_A0A2Y9JDR6_A0A2Y9JDR6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3HGG6_A0A2I3HGG6_NOMLE_61853 and tr_H2NIS5_H2NIS5_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3HGG6_A0A2I3HGG6_NOMLE_61853 and tr_A0A2I3T7H8_A0A2I3T7H8_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and tr_H2PMD8_H2PMD8_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and tr_H2QUF0_H2QUF0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and sp_Q9UMR3_TBX20_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and tr_F7E831_F7E831_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and tr_G3TMI8_G3TMI8_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and tr_F7HNF6_F7HNF6_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and tr_G7P0F2_G7P0F2_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and tr_A0A096N256_A0A096N256_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and tr_A0A0D9RR04_A0A0D9RR04_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QLX5_G1QLX5_NOMLE_61853 and tr_A0A1U7TSS3_A0A1U7TSS3_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G3RCB5_G3RCB5_GORGO_9595 and sp_Q96SF7_TBX15_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RCB5_G3RCB5_GORGO_9595 and tr_A0A2K5LR15_A0A2K5LR15_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RCB5_G3RCB5_GORGO_9595 and tr_A0A2K5YJW2_A0A2K5YJW2_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3RD44_G3RD44_GORGO_9595 and tr_A0A2J8XKH3_A0A2J8XKH3_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3RD44_G3RD44_GORGO_9595 and sp_Q99593_TBX5_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RD44_G3RD44_GORGO_9595 and tr_A0A0D9S4A3_A0A0D9S4A3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2N668_H2N668_PONAB_9601 and tr_F7H8C1_F7H8C1_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2PJQ4_H2PJQ4_PONAB_9601 and tr_H2QTC7_H2QTC7_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2PJQ4_H2PJQ4_PONAB_9601 and sp_O95935_TBX18_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PJQ4_H2PJQ4_PONAB_9601 and tr_F7CBI6_F7CBI6_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2PJQ4_H2PJQ4_PONAB_9601 and tr_A0A096NF47_A0A096NF47_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2PJQ4_H2PJQ4_PONAB_9601 and tr_A0A2K5LXF7_A0A2K5LXF7_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2PJQ4_H2PJQ4_PONAB_9601 and tr_A0A2K6BJK6_A0A2K6BJK6_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2PJQ4_H2PJQ4_PONAB_9601 and tr_A0A2R9A1N2_A0A2R9A1N2_PANPA_9597 are exactly identical! WARNING: Sequences tr_Q29F60_Q29F60_DROPS_46245 and tr_B4HB12_B4HB12_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A2I3TC56_A0A2I3TC56_PANTR_9598 and tr_A0A2R9AAX1_A0A2R9AAX1_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QDL3_H2QDL3_PANTR_9598 and sp_Q13207_TBX2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QDL4_H2QDL4_PANTR_9598 and tr_A0A2R9BRB8_A0A2R9BRB8_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6Q953_F6Q953_MONDO_13616 and tr_G3WV03_G3WV03_SARHA_9305 are exactly identical! WARNING: Sequences tr_M3ZR84_M3ZR84_XIPMA_8083 and tr_A0A087Y4D4_A0A087Y4D4_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZT55_M3ZT55_XIPMA_8083 and tr_A0A096LXJ4_A0A096LXJ4_POEFO_48698 are exactly identical! WARNING: Sequences tr_I3MK95_I3MK95_ICTTR_43179 and tr_A0A286X9P1_A0A286X9P1_CAVPO_10141 are exactly identical! WARNING: Sequences tr_F6WW74_F6WW74_MACMU_9544 and tr_A0A0D9S4A5_A0A0D9S4A5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6WW74_F6WW74_MACMU_9544 and tr_A0A2K5MT14_A0A2K5MT14_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6WW74_F6WW74_MACMU_9544 and tr_A0A2K6ARE0_A0A2K6ARE0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6WW74_F6WW74_MACMU_9544 and tr_A0A2K5XDI3_A0A2K5XDI3_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6ZEH2_F6ZEH2_MACMU_9544 and tr_A0A2K6BSZ7_A0A2K6BSZ7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2R8PB87_A0A2R8PB87_CALJA_9483 and tr_A0A096MW07_A0A096MW07_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F1SIK8_F1SIK8_PIG_9823 and tr_A0A2U3V2W3_A0A2U3V2W3_TURTR_9739 are exactly identical! WARNING: Sequences tr_F1SIK8_F1SIK8_PIG_9823 and tr_A0A2Y9P1V7_A0A2Y9P1V7_DELLE_9749 are exactly identical! WARNING: Sequences tr_F1SIK8_F1SIK8_PIG_9823 and tr_A0A2Y9FRV6_A0A2Y9FRV6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F1SIK8_F1SIK8_PIG_9823 and tr_A0A384A4W5_A0A384A4W5_BALAS_310752 are exactly identical! WARNING: Sequences tr_D2HA06_D2HA06_AILME_9646 and tr_A0A2U3X3N1_A0A2U3X3N1_ODORO_9708 are exactly identical! WARNING: Sequences tr_D2HA06_D2HA06_AILME_9646 and tr_A0A2U3XRT2_A0A2U3XRT2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_B3S6C1_B3S6C1_TRIAD_10228 and tr_A0A369SLS1_A0A369SLS1_9METZ_287889 are exactly identical! WARNING: Sequences tr_A0A096NHQ7_A0A096NHQ7_PAPAN_9555 and tr_A0A0D9R1I0_A0A0D9R1I0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096NHQ7_A0A096NHQ7_PAPAN_9555 and tr_A0A2K5KIE3_A0A2K5KIE3_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NHQ7_A0A096NHQ7_PAPAN_9555 and tr_A0A2K5YX76_A0A2K5YX76_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3M7F5_A0A2I3M7F5_PAPAN_9555 and tr_A0A2K5LIE8_A0A2K5LIE8_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A151M3U9_A0A151M3U9_ALLMI_8496 and tr_A0A1U7RSR8_A0A1U7RSR8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151N4K8_A0A151N4K8_ALLMI_8496 and tr_A0A3Q0FNC3_A0A3Q0FNC3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151P2D7_A0A151P2D7_ALLMI_8496 and tr_A0A1U7RIZ4_A0A1U7RIZ4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A093PUT9_A0A093PUT9_9PASS_328815 and tr_A0A091GAR1_A0A091GAR1_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A093PUT9_A0A093PUT9_9PASS_328815 and tr_A0A0A0AN11_A0A0A0AN11_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A093PUT9_A0A093PUT9_9PASS_328815 and tr_A0A091I0I4_A0A091I0I4_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A093PZY7_A0A093PZY7_9PASS_328815 and tr_A0A091I8P0_A0A091I8P0_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A0V1D342_A0A0V1D342_TRIBR_45882 and tr_A0A0V1A6P1_A0A0V1A6P1_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1D342_A0A0V1D342_TRIBR_45882 and tr_A0A0V0TYX1_A0A0V0TYX1_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0WIN9_A0A0V0WIN9_9BILA_92179 and tr_A0A0V1L6A2_A0A0V1L6A2_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1M7L7_A0A0V1M7L7_9BILA_268474 and tr_A0A0V1H9W2_A0A0V1H9W2_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1D1VRD2_A0A1D1VRD2_RAMVA_947166 and tr_A0A1D1VT03_A0A1D1VT03_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A226MNG5_A0A226MNG5_CALSU_9009 and tr_A0A226P9A9_A0A226P9A9_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MV22_A0A226MV22_CALSU_9009 and tr_A0A226PUW7_A0A226PUW7_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NBM1_A0A226NBM1_CALSU_9009 and tr_A0A226PG36_A0A226PG36_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NMG6_A0A226NMG6_CALSU_9009 and tr_A0A226P952_A0A226P952_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0QC04_A0A2D0QC04_ICTPU_7998 and tr_A0A2D0QD34_A0A2D0QD34_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5MW17_A0A2K5MW17_CERAT_9531 and tr_A0A2K6CZN0_A0A2K6CZN0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2K5NJX0_A0A2K5NJX0_CERAT_9531 and tr_A0A2K5XI87_A0A2K5XI87_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2K5NJX0_A0A2K5NJX0_CERAT_9531 and tr_A0A2Y9E1E4_A0A2Y9E1E4_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A2U3WH23_A0A2U3WH23_ODORO_9708 and tr_A0A2U3XDT3_A0A2U3XDT3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2Y9LAH3_A0A2Y9LAH3_DELLE_9749 and tr_A0A2Y9SHI7_A0A2Y9SHI7_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 79 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99593/4_raxmlng_ancestral/Q99593.raxml.reduced.phy Alignment comprises 1 partitions and 518 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 518 Gaps: 31.85 % Invariant sites: 0.19 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99593/4_raxmlng_ancestral/Q99593.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99593/3_mltree/Q99593.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 130 / 10400 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -216999.444824 [00:00:00 -216999.444824] Initial branch length optimization [00:00:01 -144356.982400] Model parameter optimization (eps = 0.100000) [00:00:41] Tree #1, final logLikelihood: -143995.930301 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.132407,0.147989) (0.151011,0.189271) (0.194891,0.589090) (0.521691,1.604426) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99593/4_raxmlng_ancestral/Q99593.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99593/4_raxmlng_ancestral/Q99593.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99593/4_raxmlng_ancestral/Q99593.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q99593/4_raxmlng_ancestral/Q99593.raxml.log Analysis started: 02-Jun-2021 18:09:39 / finished: 02-Jun-2021 18:10:25 Elapsed time: 45.988 seconds Consumed energy: 3.879 Wh